Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000833.1 Hibiscus syriacus cultivar Beakdansim tig00001611_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77125
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:5206 original size:21 final size:21
Alignment explanation
Indices: 5182--5224 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
5172 ATTCACTTTG
*
5182 TTGGACTTAT-ATTGTTGGATT
1 TTGG-CTTATAATTATTGGATT
*
5203 TTGGTTTATAATTATTGGATT
1 TTGGCTTATAATTATTGGATT
5224 T
1 T
5225 ACGATTGGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.21, C:0.02, G:0.21, T:0.56
Consensus pattern (21 bp):
TTGGCTTATAATTATTGGATT
Found at i:7735 original size:13 final size:13
Alignment explanation
Indices: 7698--7737 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
7688 TCTATAACGT
*
7698 GTATTTATGACAC
1 GTATTTATGACGC
*
7711 GCATTTATGACGC
1 GTATTTATGACGC
7724 GTATTTATGACGC
1 GTATTTATGACGC
7737 G
1 G
7738 AATTGAGCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (13 bp):
GTATTTATGACGC
Found at i:9676 original size:2 final size:2
Alignment explanation
Indices: 9663--9696 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
9653 ATATTTGGTG
*
9663 TA TA TGA TA TA TA TA TA TA GA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T
9697 GTCCGCCAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (2 bp):
TA
Found at i:11795 original size:91 final size:91
Alignment explanation
Indices: 11630--11797 Score: 248
Period size: 91 Copynumber: 1.8 Consensus size: 91
11620 ACCTTCAAGA
* *
11630 AAAAAACAGCAACAAATGATGTAAAACAGTTGACAAGGAATATATACTTAACATATTTGTTTAAG
1 AAAAAACAGCAACAAAAGATGTAAAACAATTGACAAGGAATATATACTTAACATATTTGTTTAAG
11695 GCCTACATAAAAGAATGAAATATCAT
66 GCCTACATAAAAGAATGAAATATCAT
* * * *
11721 AAAATACAGCAACAAAAGATGTCAAACAATTGACATGGAAT-TAATATTTAACATATTTGTTTAA
1 AAAAAACAGCAACAAAAGATGTAAAACAATTGACAAGGAATAT-ATACTTAACATATTTGTTTAA
* *
11785 GGTCTGCATAAAA
65 GGCCTACATAAAA
11798 AATCATAAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
90 1 0.01
91 67 0.99
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.27
Consensus pattern (91 bp):
AAAAAACAGCAACAAAAGATGTAAAACAATTGACAAGGAATATATACTTAACATATTTGTTTAAG
GCCTACATAAAAGAATGAAATATCAT
Found at i:13464 original size:20 final size:22
Alignment explanation
Indices: 13441--13487 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
13431 AAGGAGTACT
*
13441 GATACTC-A-ATGTTTAGTATC
1 GATACTCTATATGGTTAGTATC
13461 GATAC-CTATATGGTTAGTATC
1 GATACTCTATATGGTTAGTATC
13482 GATACT
1 GATACT
13488 GAGGTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 1 0.04
20 6 0.26
21 16 0.70
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (22 bp):
GATACTCTATATGGTTAGTATC
Found at i:16317 original size:4 final size:4
Alignment explanation
Indices: 16308--16398 Score: 52
Period size: 4 Copynumber: 24.5 Consensus size: 4
16298 TAAAAATAAT
* * * *
16308 TATA TATA TATA TATA TATA TA-A TAT- TA-A TAAA TTTA -ATT TAAA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * *
16352 T-TA AATA TATA TATA TA-A TATT TATA TATT TA-A TTTA AATA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
16397 TA
1 TA
16399 CCCGACCCGA
Statistics
Matches: 63, Mismatches: 17, Indels: 14
0.67 0.18 0.15
Matches are distributed among these distances:
3 13 0.21
4 50 0.79
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
TATA
Found at i:16319 original size:6 final size:6
Alignment explanation
Indices: 16308--16398 Score: 52
Period size: 6 Copynumber: 16.3 Consensus size: 6
16298 TAAAAATAAT
* * * *
16308 TATATA TATATA TATATA TATA-A TAT-TA -ATAAA TTTA-A TTTAAA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* * * * *
16352 T-TAAA TATATA TATATA -ATATT TATATA TTTA-A TTTAAA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
16397 TA
1 TA
16399 CCCGACCCGA
Statistics
Matches: 70, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
4 2 0.03
5 25 0.36
6 43 0.61
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TATATA
Found at i:16360 original size:39 final size:39
Alignment explanation
Indices: 16317--16391 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
16307 TTATATATAT
16317 ATATATATATATAATATTAATAAATTTAATTTAAATTAA
1 ATATATATATATAATATTAATAAATTTAATTTAAATTAA
* *
16356 ATATATATATATAATATTTATATATTTAATTTAAAT
1 ATATATATATATAATATTAATAAATTTAATTTAAAT
16392 ATATATACCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (39 bp):
ATATATATATATAATATTAATAAATTTAATTTAAATTAA
Found at i:27023 original size:28 final size:29
Alignment explanation
Indices: 26977--27034 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
26967 GACTTGATAG
* * *
26977 TTCAGCTCATTAAAAGGAGACTGAAACCT
1 TTCAGATCATTAAAAGGAGAATAAAACCT
*
27006 TTCAGATCA-TAAAGGGAGAATAAAACCT
1 TTCAGATCATTAAAAGGAGAATAAAACCT
27034 T
1 T
27035 AGGAATCGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (29 bp):
TTCAGATCATTAAAAGGAGAATAAAACCT
Found at i:33154 original size:2 final size:2
Alignment explanation
Indices: 33147--33184 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
33137 AGTAGATCAG
33147 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33185 GTGCATGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36620 original size:24 final size:24
Alignment explanation
Indices: 36593--36648 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
36583 ATTATTAAGG
36593 AGGAGTTATGGAATTTATGAGTTT
1 AGGAGTTATGGAATTTATGAGTTT
36617 AGGAGTTATGGAATTTATGAGTTT
1 AGGAGTTATGGAATTTATGAGTTT
*
36641 GGGAGTTA
1 AGGAGTTA
36649 GATAGTCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (24 bp):
AGGAGTTATGGAATTTATGAGTTT
Found at i:49261 original size:42 final size:41
Alignment explanation
Indices: 49213--49426 Score: 184
Period size: 42 Copynumber: 5.1 Consensus size: 41
49203 TAAAAAAGCT
* *
49213 GCAATAGGGTGATAAATTAGCGGCGTTTATATCATAAACGCC
1 GCAATAGAGTGATAAATTAGCGGCGTTTATACCA-AAACGCC
* * *
49255 GCAATAGA-TTATAAATTTTGCGGCGATTTA-GCCAAAACGCC
1 GCAATAGAGTGATAAA-TTAGCGGCG-TTTATACCAAAACGCC
* * * * * * *
49296 CCAATAGAGTGGTAAACTGGCGGCATTTTTTCCACAAACGCC
1 GCAATAGAGTGATAAATTAGCGGCGTTTATACCA-AAACGCC
* * *
49338 GCAATAGAGT-ATAAATTTTGCGGCGATTTA-GCCAAAACGTC
1 GCAATAGAGTGATAAA-TTAGCGGCG-TTTATACCAAAACGCC
* *
49379 GCAATAGAGTGGTAAATTAGCGGCGTTTTTACCACAAACGCC
1 GCAATAGAGTGATAAATTAGCGGCGTTTATACCA-AAACGCC
49421 GCAATA
1 GCAATA
49427 TATTACACAT
Statistics
Matches: 136, Mismatches: 26, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
40 6 0.04
41 60 0.44
42 63 0.46
43 7 0.05
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (41 bp):
GCAATAGAGTGATAAATTAGCGGCGTTTATACCAAAACGCC
Found at i:49269 original size:41 final size:40
Alignment explanation
Indices: 49224--49469 Score: 154
Period size: 42 Copynumber: 5.9 Consensus size: 40
49214 CAATAGGGTG
*
49224 ATAAATTAGCGGCGTTTATATCATAAACGCCGCAATAGATT
1 ATAAATTAGCGGCGTTTATACCA-AAACGCCGCAATAGATT
* * * *
49265 ATAAATTTTGCGGCGATTTA-GCCAAAACGCCCCAATAGAGTG
1 ATAAA-TTAGCGGCG-TTTATACCAAAACGCCGCAATAGA-TT
* * * * * * *
49307 GTAAACTGGCGGCATTTTTTCCACAAACGCCGCAATAGAGT
1 ATAAATTAGCGGCGTTTATACCA-AAACGCCGCAATAGATT
* * * *
49348 ATAAATTTTGCGGCGATTTA-GCCAAAACGTCGCAATAGAGTG
1 ATAAA-TTAGCGGCG-TTTATACCAAAACGCCGCAATAGA-TT
* * *
49390 GTAAATTAGCGGCGTTTTTACCACAAACGCCGCAATATATT
1 ATAAATTAGCGGCGTTTATACCA-AAACGCCGCAATAGATT
* * * * * *
49431 ACACATATAGTGGCGTTTGTTCCTAAAACGCTGCAATAG
1 ATAAAT-TAGCGGCGTTTATACC-AAAACGCCGCAATAG
49470 TGTTAATCAA
Statistics
Matches: 155, Mismatches: 38, Indels: 23
0.72 0.18 0.11
Matches are distributed among these distances:
40 6 0.04
41 61 0.39
42 80 0.52
43 8 0.05
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (40 bp):
ATAAATTAGCGGCGTTTATACCAAAACGCCGCAATAGATT
Found at i:49301 original size:83 final size:82
Alignment explanation
Indices: 49214--49431 Score: 301
Period size: 83 Copynumber: 2.6 Consensus size: 82
49204 AAAAAAGCTG
* * *
49214 CAATAGGGTGATAAATTAGCGGCGTTTATATCATAAACGCCGCAATAGATTATAAATTTTGCGGC
1 CAATAGAGTGGTAAATTAGCGGCGTTT-TATCACAAACGCCGCAATAGATTATAAATTTTGCGGC
49279 GATTTAGCCAAAACGCCC
65 GATTTAGCCAAAACGCCC
* * * * *
49297 CAATAGAGTGGTAAACTGGCGGCATTTTTTCCACAAACGCCGCAATAGAGTATAAATTTTGCGGC
1 CAATAGAGTGGTAAATTAGCGGCGTTTTAT-CACAAACGCCGCAATAGATTATAAATTTTGCGGC
* *
49362 GATTTAGCCAAAACGTCG
65 GATTTAGCCAAAACGCCC
* *
49380 CAATAGAGTGGTAAATTAGCGGCGTTTTTACCACAAACGCCGCAATATATTA
1 CAATAGAGTGGTAAATTAGCGGCG-TTTTATCACAAACGCCGCAATAGATTA
49432 CACATATAGT
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
82 2 0.02
83 110 0.95
84 4 0.03
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (82 bp):
CAATAGAGTGGTAAATTAGCGGCGTTTTATCACAAACGCCGCAATAGATTATAAATTTTGCGGCG
ATTTAGCCAAAACGCCC
Found at i:49510 original size:41 final size:41
Alignment explanation
Indices: 49412--49668 Score: 292
Period size: 41 Copynumber: 6.2 Consensus size: 41
49402 CGTTTTTACC
* *
49412 ACAAACGCCGCAATA-TATTACA-CATATAGTGGCGTTTGTTCCT
1 ACAAACGCCGCAATAGTGTTA-ATCA-ATAGTGGCGTTT-TT-GT
* *
49455 A-AAACGCTGCAATAGTGTTAATCAATAGTGGCATTTTTGT
1 ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTGT
*
49495 ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTAT
1 ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTGT
49536 ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTAG-
1 ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTT-GT
* * *
49577 ACAAACGTCGCAATAGTGTTAAACAATAGTGGCGTTTAT-T
1 ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTGT
* * * *
49617 AGCAAACGCCACAATAATG-TAATCAAAAGTGGCTTTTTTTGT
1 A-CAAACGCCGCAATAGTGTTAATCAATAGTGGC-GTTTTTGT
*
49659 ATAAACGCCG
1 ACAAACGCCG
49669 TAAAATGTTA
Statistics
Matches: 186, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
40 15 0.08
41 138 0.74
42 26 0.14
43 7 0.04
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (41 bp):
ACAAACGCCGCAATAGTGTTAATCAATAGTGGCGTTTTTGT
Found at i:59170 original size:21 final size:21
Alignment explanation
Indices: 59087--59230 Score: 128
Period size: 21 Copynumber: 6.9 Consensus size: 21
59077 AAGCAAGGGA
* * *
59087 AGCAGAGAGAGCAGCAGCGGA
1 AGCACAGAGAGAAGCAGCGGC
* * *
59108 AGCAGC-TAGAGCAGCAGCGGA
1 AGCA-CAGAGAGAAGCAGCGGC
* *
59129 AGCAGAGAAAGAAGCAGCGGC
1 AGCACAGAGAGAAGCAGCGGC
59150 AGCACAGAGAGAAGCAGCGGC
1 AGCACAGAGAGAAGCAGCGGC
* * * *
59171 AGTACAAAGAGAAGTAGCGAC
1 AGCACAGAGAGAAGCAGCGGC
* * * *
59192 AACACGGAGAGAAGTAGCGAC
1 AGCACAGAGAGAAGCAGCGGC
59213 AGCACAGAGAGAAGCAGC
1 AGCACAGAGAGAAGCAGC
59231 ACATCAGCAT
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
21 101 1.00
ACGTcount: A:0.41, C:0.20, G:0.36, T:0.03
Consensus pattern (21 bp):
AGCACAGAGAGAAGCAGCGGC
Found at i:59803 original size:43 final size:43
Alignment explanation
Indices: 59551--59947 Score: 226
Period size: 43 Copynumber: 9.3 Consensus size: 43
59541 GTGTTATTTA
* *
59551 GCGGCGTTTGTTAAAAAAACGCCGC-AATATACCATACA--T-TT
1 GCGGCGTTTGTTGAAAAAACGCCGCTAA-ATATCA-ACACCTATT
* **
59592 AGCGGCGTTTGTATG-AAAAACACCGCTAAAGCTCAACACCTATT
1 -GCGGCGTTTGT-TGAAAAAACGCCGCTAAATATCAACACCTATT
* * * * * *
59636 GCTGCGTTT-TTAATAAAAACGCCACTAATTCTTAAC-CCTTATT
1 GCGGCGTTTGTTGA-AAAAACGCCGCTAAATATCAACACC-TATT
** * * * * * * *
59679 GCATCATTT-TCGATACAAACGCCGCTTAATCTGAAAACCTATT
1 GCGGCGTTTGTTGA-AAAAACGCCGCTAAATATCAACACCTATT
* * * * * * *
59722 GCGACATTTG-GGGAGAAACGCCGCTAAACATCATCACCTATT
1 GCGGCGTTTGTTGAAAAAACGCCGCTAAATATCAACACCTATT
* *
59764 GCGTCGTTTGTTGAAAAAACGCCG-TAAAATATCAACACCTACT
1 GCGGCGTTTGTTGAAAAAACGCCGCT-AAATATCAACACCTATT
* *
59807 GCGGCGTTTG-T-AAGTAAAACGCAGCTAAATATCAACACCTACT
1 GCGGCGTTTGTTGAA--AAAACGCCGCTAAATATCAACACCTATT
* * ** * * *
59850 ACGGCGTTTGTAGGGAAAATGCCGCTAAACATCAAAACCTATT
1 GCGGCGTTTGTTGAAAAAACGCCGCTAAATATCAACACCTATT
* * * *
59893 ACGGCGTTT-TTGTGACAAACGCCGCTAAATAACAACACCTATT
1 GCGGCGTTTGTTG-AAAAAACGCCGCTAAATATCAACACCTATT
59936 GCGGCGTTTGTT
1 GCGGCGTTTGTT
59948 TATATGTTGT
Statistics
Matches: 275, Mismatches: 61, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
41 6 0.02
42 61 0.22
43 201 0.73
44 7 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
GCGGCGTTTGTTGAAAAAACGCCGCTAAATATCAACACCTATT
Found at i:60405 original size:2 final size:2
Alignment explanation
Indices: 60363--60390 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
60353 AATTTGAGTA
60363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60391 GTAGAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60807 original size:25 final size:27
Alignment explanation
Indices: 60756--60809 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 27
60746 GCACCAGAAA
60756 AAAAAGTAAGGAAAAGTTAACATTTTAAG
1 AAAAAGTAAGGAAAA--TAACATTTTAAG
60785 AAAAAGTAA-GAAAA-AACATTTTAAG
1 AAAAAGTAAGGAAAATAACATTTTAAG
60810 TTGTGCTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 11 0.44
28 5 0.20
29 9 0.36
ACGTcount: A:0.59, C:0.04, G:0.15, T:0.22
Consensus pattern (27 bp):
AAAAAGTAAGGAAAATAACATTTTAAG
Found at i:65015 original size:14 final size:14
Alignment explanation
Indices: 64998--65042 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
64988 AAAATATAAT
*
64998 ATAAATATATATAC
1 ATAAGTATATATAC
65012 ATAAGTATATATAC
1 ATAAGTATATATAC
* *
65026 ATACGTGTATATAC
1 ATAAGTATATATAC
65040 ATA
1 ATA
65043 TCTATATAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.36
Consensus pattern (14 bp):
ATAAGTATATATAC
Found at i:65050 original size:14 final size:13
Alignment explanation
Indices: 65003--65050 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
64993 ATAATATAAA
*
65003 TATATATACATAAG
1 TATATATACAT-AC
65017 TATATATACATAC
1 TATATATACATAC
*
65030 GTGTATATACATATC
1 -TATATATACATA-C
65045 TATATA
1 TATATA
65051 GGCCACCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 1 0.03
14 27 0.93
15 1 0.03
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (13 bp):
TATATATACATAC
Found at i:70547 original size:19 final size:19
Alignment explanation
Indices: 70523--70560 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
70513 GACTTTGATG
70523 ATTTCTGCAGCCCCCCTTC
1 ATTTCTGCAGCCCCCCTTC
*
70542 ATTTCTGCGGCCCCCCTTC
1 ATTTCTGCAGCCCCCCTTC
70561 TTGGACTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.08, C:0.47, G:0.13, T:0.32
Consensus pattern (19 bp):
ATTTCTGCAGCCCCCCTTC
Done.