Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008330.1 Hibiscus syriacus cultivar Beakdansim tig00111038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 159554
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:4045 original size:11 final size:11
Alignment explanation
Indices: 4029--4059 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
4019 TCCAGCAAAG
4029 AAAGAAAAAAA
1 AAAGAAAAAAA
4040 AAAGAAAAAAA
1 AAAGAAAAAAA
4051 AAAGAAAAA
1 AAAGAAAAA
4060 GGAAAATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:4047 original size:6 final size:6
Alignment explanation
Indices: 4029--4065 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
4019 TCCAGCAAAG
*
4029 AAAGAA AAA-AA AAAGAA AAA-AA AAAGAA AAAGGA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
4066 TTGAATCAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:6417 original size:91 final size:91
Alignment explanation
Indices: 6252--6432 Score: 267
Period size: 91 Copynumber: 2.0 Consensus size: 91
6242 TAGTAGAAAT
* * *
6252 AATGTGCCCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCAC
1 AATGTGCCCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTTGGTATGAACCAC
*
6317 AGAACCAATCATTGAATTTGGAAGAC
66 AGAACCAATCATTGAATTTGAAAGAC
*
6343 AATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTTGGTATGAACTCT
1 AATGTGCCCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTTGGTATGAAC-C-
* *
6408 A-A-AATCAATCATTGGATTTGAAAGA
64 ACAGAACCAATCATTGAATTTGAAAGA
6433 TGAATTTTGC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
91 78 0.96
92 2 0.02
93 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (91 bp):
AATGTGCCCATAGCATCTTCTGGAAGTGTTCTTTGAATTATCTGATATGATTTGGTATGAACCAC
AGAACCAATCATTGAATTTGAAAGAC
Found at i:9991 original size:76 final size:76
Alignment explanation
Indices: 9865--11039 Score: 2280
Period size: 76 Copynumber: 15.5 Consensus size: 76
9855 CTATTTCTCA
*
9865 CATCTGTAAATCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
9930 AGCCTTCGGGT
66 AGCCTTCGGGT
9941 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10006 AGCCTTCGGGT
66 AGCCTTCGGGT
10017 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10082 AGCCTTCGGGT
66 AGCCTTCGGGT
10093 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10158 AGCCTTCGGGT
66 AGCCTTCGGGT
10169 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGC-TTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10233 AGCCTTCGGGT
66 AGCCTTCGGGT
10244 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10309 AGCCTTCGGGT
66 AGCCTTCGGGT
*
10320 CATCTGTAAGTCCTTCAGTGTATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10385 AGCCTTCGGGT
66 AGCCTTCGGGT
10396 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10461 AGCCTTCGGGT
66 AGCCTTCGGGT
10472 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10537 AGCCTTCGGGT
66 AGCCTTCGGGT
10548 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10613 AGCCTTCGGGT
66 AGCCTTCGGGT
10624 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10689 AGCCTTCGGGT
66 AGCCTTCGGGT
*
10700 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTACGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10765 AGCCTTCGGGT
66 AGCCTTCGGGT
10776 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10841 AGCCTTCGGGT
66 AGCCTTCGGGT
10852 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
10917 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
10928 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGTAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
*
10993 AGCCTTAGGGT
66 AGCCTTCGGGT
*
11004 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAA
11040 CCTTCGGGTC
Statistics
Matches: 1089, Mismatches: 9, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 0.07
76 1014 0.93
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (76 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTCGGGT
Found at i:11034 original size:45 final size:45
Alignment explanation
Indices: 10981--11128 Score: 251
Period size: 45 Copynumber: 3.3 Consensus size: 45
10971 GGTAGCTTTT
* *
10981 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
*
11026 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTTAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
* *
11071 TGATGTTTTCAAAACCTTCGGGTTATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
11116 TGATGTTTTCAAA
1 TGATGTTTTCAAA
11129 CATTTCCATC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 97 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
Found at i:11263 original size:3 final size:3
Alignment explanation
Indices: 11255--11325 Score: 74
Period size: 3 Copynumber: 24.0 Consensus size: 3
11245 TCATTTAAGC
** * **
11255 TTA TTA TTA TTA TTA AAA TCA AAA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11303 TTA TTA TTA -TA TT- TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA
11326 AAAATTACAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
2 4 0.07
3 50 0.88
4 3 0.05
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:12032 original size:14 final size:14
Alignment explanation
Indices: 12013--12039 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
12003 ACCGTTACGG
12013 TGGCCGGCGGCGGT
1 TGGCCGGCGGCGGT
12027 TGGCCGGCGGCGG
1 TGGCCGGCGGCGG
12040 AGTACGGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.30, G:0.59, T:0.11
Consensus pattern (14 bp):
TGGCCGGCGGCGGT
Found at i:16388 original size:107 final size:107
Alignment explanation
Indices: 16202--16420 Score: 438
Period size: 107 Copynumber: 2.0 Consensus size: 107
16192 ATTTTTACCC
16202 GAAGAAAATAATGCAAACTAAACCAATTTGGACTATTAACAAGCTGTTCTCTACTTGATATATTA
1 GAAGAAAATAATGCAAACTAAACCAATTTGGACTATTAACAAGCTGTTCTCTACTTGATATATTA
16267 ATGTAATGCTCCAAGGTACTATAGCAAAGTCGAGTGGCTTAA
66 ATGTAATGCTCCAAGGTACTATAGCAAAGTCGAGTGGCTTAA
16309 GAAGAAAATAATGCAAACTAAACCAATTTGGACTATTAACAAGCTGTTCTCTACTTGATATATTA
1 GAAGAAAATAATGCAAACTAAACCAATTTGGACTATTAACAAGCTGTTCTCTACTTGATATATTA
16374 ATGTAATGCTCCAAGGTACTATAGCAAAGTCGAGTGGCTTAA
66 ATGTAATGCTCCAAGGTACTATAGCAAAGTCGAGTGGCTTAA
16416 GAAGA
1 GAAGA
16421 TACTAATTCA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 112 1.00
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (107 bp):
GAAGAAAATAATGCAAACTAAACCAATTTGGACTATTAACAAGCTGTTCTCTACTTGATATATTA
ATGTAATGCTCCAAGGTACTATAGCAAAGTCGAGTGGCTTAA
Found at i:21887 original size:83 final size:82
Alignment explanation
Indices: 21792--22125 Score: 246
Period size: 83 Copynumber: 4.0 Consensus size: 82
21782 CTTTAGCGGT
* * *
21792 GTTTTTTAAACAAAAGTCGTAATAGAGTGGTAATTTAGCGGCATTTATAGCTA-AAACGCCGCAA
1 GTTTTTTCAACAAAAGCCGCAATAGAGTGGTAATTTAGCGGCATTTATA-C-ACAAACGCCGCAA
21856 TAGAGATGTTTATAGTGGC
64 TAGAGATGTTTATAGTGGC
* * * * *
21875 GTTTTTTCAACAAACGCCGCAATAGAGTGGTAATTTAGCGGCGTTTTTACACAAACGTCGCGATA
1 GTTTTTTCAACAAAAGCCGCAATAGAGTGGTAATTTAGCGGCATTTATACACAAACGCCGCAATA
* * *
21940 GTGTTGTTTATATTGGC
66 GAGATGTTTATAGTGGC
* * * * * * * ** * * *
21957 GTTTGTTCAACAAACGACGCTATAGA-TAAGTAATTTCGTGGTGTTTATAAAAAAAACGCCGTAA
1 GTTTTTTCAACAAAAGCCGCAATAGAGT-GGTAATTTAGCGGCATTTAT-ACACAAACGCCGCAA
*
22021 TAGTA-TTGTTTATAGTGGC
64 TAG-AGATGTTTATAGTGGC
* * ** * * * * *
22040 GTTTGTGCAA-AAAACGCCGCAATAGAGTAATAATATAGCGGCATTTTTCCTACAAATGTCGCAA
1 GTTTTTTCAACAAAA-GCCGCAATAGAGTGGTAATTTAGCGGCATTTATAC-ACAAACGCCGCAA
* * *
22104 TA-TGTTGTTTATCGTGGC
64 TAGAGATGTTTATAGTGGC
22122 GTTT
1 GTTT
22126 ATATTAAAAC
Statistics
Matches: 198, Mismatches: 45, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
81 2 0.01
82 84 0.42
83 111 0.56
84 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (82 bp):
GTTTTTTCAACAAAAGCCGCAATAGAGTGGTAATTTAGCGGCATTTATACACAAACGCCGCAATA
GAGATGTTTATAGTGGC
Found at i:21892 original size:41 final size:41
Alignment explanation
Indices: 21845--22066 Score: 148
Period size: 41 Copynumber: 5.4 Consensus size: 41
21835 TTTATAGCTA
* *
21845 AAACGCCGCAATAGAGATGTTTATAGTGGCGTTTTTTCAAC
1 AAACGCCGCAATAGAGATGTTTATAGTGGCGTTTGTACAAC
* *
21886 AAACGCCGCAATAGAG-TGGTAATT-TAGCGGCGTTTTTAC-AC
1 AAACGCCGCAATAGAGAT-GT--TTATAGTGGCGTTTGTACAAC
* * * * * *
21927 AAACGTCGCGATAGTGTTGTTTATATTGGCGTTTGTTCAAC
1 AAACGCCGCAATAGAGATGTTTATAGTGGCGTTTGTACAAC
* * * * * * * * *
21968 AAACGACGCTATAGATAAGTAATT-TCGTGGTGTTTATAAAAA
1 AAACGCCGCAATAGAGATGT--TTATAGTGGCGTTTGTACAAC
* * * *
22010 AAACGCCGTAATAGTA-TTGTTTATAGTGGCGTTTGTGCAAA
1 AAACGCCGCAATAG-AGATGTTTATAGTGGCGTTTGTACAAC
22051 AAACGCCGCAATAGAG
1 AAACGCCGCAATAGAG
22067 TAATAATATA
Statistics
Matches: 137, Mismatches: 33, Indels: 22
0.71 0.17 0.11
Matches are distributed among these distances:
39 2 0.01
40 15 0.11
41 77 0.56
42 38 0.28
43 5 0.04
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (41 bp):
AAACGCCGCAATAGAGATGTTTATAGTGGCGTTTGTACAAC
Found at i:28217 original size:44 final size:44
Alignment explanation
Indices: 28151--28257 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
28141 TTTAGCGGCG
**
28151 TTTGTATCAAAAAAACGCCACTATATAT-AAGACCTATCGCGACA
1 TTTGTATCCTAAAAACGCCACTATAT-TCAAGACCTATCGCGACA
* * * * *
28195 TTTGTATCCTAAAAACGGCACTATATTCCAGTCCTATCGCGGCG
1 TTTGTATCCTAAAAACGCCACTATATTCAAGACCTATCGCGACA
*
28239 TTTGTACCCTAAAAACGCC
1 TTTGTATCCTAAAAACGCC
28258 GTTAAATACC
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 1 0.02
44 52 0.98
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (44 bp):
TTTGTATCCTAAAAACGCCACTATATTCAAGACCTATCGCGACA
Found at i:28275 original size:44 final size:44
Alignment explanation
Indices: 28161--28285 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 44
28151 TTTGTATCAA
* ** * *
28161 AAAAACGCCACTATATATAAGACCTATCGCGACATTTGTATCCT
1 AAAAACGCCACTAAATACCAGACCTATCGCGACGTTTGTACCCT
* * * * *
28205 AAAAACGGCACTATATTCCAGTCCTATCGCGGCGTTTGTACCCT
1 AAAAACGCCACTAAATACCAGACCTATCGCGACGTTTGTACCCT
** * *
28249 AAAAACGCCGTTAAATACCAGACCTATTGCGCCGTTT
1 AAAAACGCCACTAAATACCAGACCTATCGCGACGTTT
28286 TCATAAAAAA
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (44 bp):
AAAAACGCCACTAAATACCAGACCTATCGCGACGTTTGTACCCT
Found at i:29347 original size:20 final size:20
Alignment explanation
Indices: 29348--29397 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
29338 TTCGGGTCAA
*
29348 TTCGGGTCAACGTTTAGATT
1 TTCGGGTCAACCTTTAGATT
*
29368 TTCGAGTCAACCTTTAGATT
1 TTCGGGTCAACCTTTAGATT
*
29388 TTCAGGTCAA
1 TTCGGGTCAA
29398 ATGGTGTCGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (20 bp):
TTCGGGTCAACCTTTAGATT
Found at i:29863 original size:23 final size:23
Alignment explanation
Indices: 29837--29900 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
29827 TAATTTCGGT
*
29837 TTGGGTTGCTTTCGGTTCGACTA
1 TTGGGTTACTTTCGGTTCGACTA
* * * *
29860 TTGGGTTACTCTCTGTTCGAGTT
1 TTGGGTTACTTTCGGTTCGACTA
29883 TTGGGTTACTTTCGGTTC
1 TTGGGTTACTTTCGGTTC
29901 AGATTGATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.08, C:0.17, G:0.28, T:0.47
Consensus pattern (23 bp):
TTGGGTTACTTTCGGTTCGACTA
Found at i:31285 original size:68 final size:68
Alignment explanation
Indices: 31199--31508 Score: 521
Period size: 68 Copynumber: 4.6 Consensus size: 68
31189 ATGAATTATA
31199 TAGATAATATATAAGTGACCAAATAGGTAGTTTACCCTAAATAATAATCGAGTGACCAAAACATA
1 TAGATAATATATAAGTGACCAAATAGGTAGTTTACCCTAAATAATAATCGAGTGACCAAAACATA
31264 AAT
66 AAT
* * * *
31267 TTGATGATATATAAGTGACCAAATAAGTAGTTTAGCCTAAATAATAATCGAGTGACCAAAACATA
1 TAGATAATATATAAGTGACCAAATAGGTAGTTTACCCTAAATAATAATCGAGTGACCAAAACATA
31332 AAT
66 AAT
* *
31335 TAGATAATATATAAGTGACCAAATAGGTAGTTTACCTTAAATAATAATCGAGTGATCAAAACATA
1 TAGATAATATATAAGTGACCAAATAGGTAGTTTACCCTAAATAATAATCGAGTGACCAAAACATA
31400 AAT
66 AAT
* * *
31403 TAGATAATATAAAAGTGACCAAATAGGTAGTTTACCCTAAATAATAATCGAGTGACAAAAACAGA
1 TAGATAATATATAAGTGACCAAATAGGTAGTTTACCCTAAATAATAATCGAGTGACCAAAACATA
31468 AAT
66 AAT
* *
31471 TAGATAATATATAAGTGATCAAATAAGTAGTTTACCCT
1 TAGATAATATATAAGTGACCAAATAGGTAGTTTACCCT
31509 TAAAAATCCC
Statistics
Matches: 224, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 224 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.28
Consensus pattern (68 bp):
TAGATAATATATAAGTGACCAAATAGGTAGTTTACCCTAAATAATAATCGAGTGACCAAAACATA
AAT
Found at i:31352 original size:31 final size:31
Alignment explanation
Indices: 31249--31425 Score: 97
Period size: 31 Copynumber: 5.3 Consensus size: 31
31239 ATAATAATCG
* *
31249 AGTGACCAAAACATAAATTTGATGATATATA
1 AGTGACCAAAACATAAATTAGATAATATATA
** * *
31280 AGTGACCAAATA-AGTAGTTTAGCCTAAATAATAATCG
1 AGTGACCAAA-ACA-TAAATTAG-AT-AAT-AT-AT-A
31317 AGTGACCAAAACATAAATTAGATAATATATA
1 AGTGACCAAAACATAAATTAGATAATATATA
* ** * *
31348 AGTGACCAAATAGGTAGTTTACCTTAAATAATA-ATCG
1 AGTGACCAAA-A--CA---TAAATTAGATAATATAT-A
* *
31385 AGTGATCAAAACATAAATTAGATAATATAAA
1 AGTGACCAAAACATAAATTAGATAATATATA
31416 AGTGACCAAA
1 AGTGACCAAA
31426 TAGGTAGTTT
Statistics
Matches: 107, Mismatches: 23, Indels: 32
0.66 0.14 0.20
Matches are distributed among these distances:
31 41 0.38
32 10 0.09
33 3 0.03
34 7 0.07
35 3 0.03
36 12 0.11
37 31 0.29
ACGTcount: A:0.49, C:0.11, G:0.14, T:0.27
Consensus pattern (31 bp):
AGTGACCAAAACATAAATTAGATAATATATA
Found at i:31457 original size:37 final size:36
Alignment explanation
Indices: 31280--31458 Score: 108
Period size: 37 Copynumber: 5.2 Consensus size: 36
31270 ATGATATATA
* *
31280 AGTGACCAAATAAGTAGTTTAGCCTAAATAATAATCG
1 AGTGACCAAATACGTAGTTTA-CATAAATAATAATCG
* ** * *
31317 AGTGACCAAA-ACATAAATTAGAT-AAT-AT-AT-A
1 AGTGACCAAATACGTAGTTTACATAAATAATAATCG
* *
31348 AGTGACCAAATAGGTAGTTTACCTTAAATAATAATCG
1 AGTGACCAAATACGTAGTTTA-CATAAATAATAATCG
* * ** * *
31385 AGTGATCAAA-ACATAAATTAGAT-AAT-ATAA--A
1 AGTGACCAAATACGTAGTTTACATAAATAATAATCG
* *
31416 AGTGACCAAATAGGTAGTTTACCCTAAATAATAATCG
1 AGTGACCAAATACGTAGTTTA-CATAAATAATAATCG
31453 AGTGAC
1 AGTGAC
31459 AAAAACAGAA
Statistics
Matches: 100, Mismatches: 30, Indels: 24
0.65 0.19 0.16
Matches are distributed among these distances:
31 19 0.19
32 14 0.14
33 8 0.08
34 12 0.12
35 8 0.08
36 14 0.14
37 25 0.25
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (36 bp):
AGTGACCAAATACGTAGTTTACATAAATAATAATCG
Found at i:32080 original size:22 final size:22
Alignment explanation
Indices: 32021--32080 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
32011 TTTTTTTCTA
32021 CTTTTATGGCATGTTTCCTATG
1 CTTTTATGGCATGTTTCCTATG
* * *
32043 CCTTTATGACATGTTTCTTATG
1 CTTTTATGGCATGTTTCCTATG
*
32065 CTTTTATGGCACGTTT
1 CTTTTATGGCATGTTT
32081 TTGGTCATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.15, C:0.18, G:0.17, T:0.50
Consensus pattern (22 bp):
CTTTTATGGCATGTTTCCTATG
Found at i:34164 original size:22 final size:22
Alignment explanation
Indices: 34136--34257 Score: 217
Period size: 22 Copynumber: 5.5 Consensus size: 22
34126 ATATAATTAT
*
34136 TTTTTAATTTTTCAATGAATGG
1 TTTTTAATTTTTCAATGAATGC
*
34158 TGTTTAATTTTTCAATGAATGC
1 TTTTTAATTTTTCAATGAATGC
34180 TTTTTAATTTTTCAATGAATGC
1 TTTTTAATTTTTCAATGAATGC
34202 TTTTTAATTTTTCAATGAATGC
1 TTTTTAATTTTTCAATGAATGC
*
34224 TTATTAATTTTTCAATGAATGC
1 TTTTTAATTTTTCAATGAATGC
34246 TTTTTAATTTTT
1 TTTTTAATTTTT
34258 TTACCAAACG
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 95 1.00
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.56
Consensus pattern (22 bp):
TTTTTAATTTTTCAATGAATGC
Found at i:34811 original size:25 final size:25
Alignment explanation
Indices: 34783--34838 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
34773 TAGAAAAAGT
34783 ATTATACCCAATTCATATTAAGATA
1 ATTATACCCAATTCATATTAAGATA
34808 ATTATACCCAATTCATATTAAGATA
1 ATTATACCCAATTCATATTAAGATA
34833 ATTATA
1 ATTATA
34839 ATTTTCTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.38
Consensus pattern (25 bp):
ATTATACCCAATTCATATTAAGATA
Found at i:34949 original size:24 final size:24
Alignment explanation
Indices: 34932--34980 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
34922 AAAATGAGTT
34932 ATTATAAAT-TATTAAAAATAAATA
1 ATTA-AAATATATTAAAAATAAATA
34956 ATTAAAATATATTAAAAATTAAATA
1 ATTAAAATATATTAAAAA-TAAATA
34981 TTTTCATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.17
24 13 0.57
25 6 0.26
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTAAAATATATTAAAAATAAATA
Found at i:38689 original size:21 final size:21
Alignment explanation
Indices: 38665--38704 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
38655 AAGACTATTT
38665 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTGAAACA
**
38686 TCATTTTTGTATTTTGAAA
1 TCATTTTTCAATTTTGAAA
38705 ATAAAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTGAAACA
Found at i:50650 original size:23 final size:22
Alignment explanation
Indices: 50615--50668 Score: 90
Period size: 23 Copynumber: 2.4 Consensus size: 22
50605 ATTCTGATTC
50615 GATTCAAACATGAAATCAACTTT
1 GATTC-AACATGAAATCAACTTT
50638 GATTCAACGATGAAATCAACTTT
1 GATTCAAC-ATGAAATCAACTTT
50661 GATTCAAC
1 GATTCAAC
50669 CTTATACAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 3 0.10
23 27 0.90
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (22 bp):
GATTCAACATGAAATCAACTTT
Found at i:55596 original size:22 final size:22
Alignment explanation
Indices: 55565--55614 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
55555 CATACCCGAA
**
55565 ATATA-ATTCATGATAAGTATC
1 ATATATATTCATGATAAACATC
55586 ATATATATTCATGATAAACATC
1 ATATATATTCATGATAAACATC
55608 ATATATA
1 ATATATA
55615 ATGATAAGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (22 bp):
ATATATATTCATGATAAACATC
Found at i:58651 original size:24 final size:25
Alignment explanation
Indices: 58624--58676 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
58614 TATATTTAGG
*
58624 TTTATCTTAAAATATATTA-TTTTA
1 TTTATCATAAAATATATTATTTTTA
*
58648 TTTA-GATAAAATATATTATTTTTA
1 TTTATCATAAAATATATTATTTTTA
58672 TTTAT
1 TTTAT
58677 ATATTTAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTATCATAAAATATATTATTTTTA
Found at i:58661 original size:23 final size:24
Alignment explanation
Indices: 58631--58675 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
58621 AGGTTTATCT
58631 TAAAATATATTA-TTTTATTTAGA
1 TAAAATATATTATTTTTATTTAGA
58654 TAAAATATATTATTTTTATTTA
1 TAAAATATATTATTTTTATTTA
58676 TATATTTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TAAAATATATTATTTTTATTTAGA
Found at i:67273 original size:23 final size:23
Alignment explanation
Indices: 67247--67295 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
67237 AGCATCGAGC
67247 TGCCTTTGGTCCAAGTGTTGAGA
1 TGCCTTTGGTCCAAGTGTTGAGA
67270 TGCCTTTGGTCCAAGTGTTGAGA
1 TGCCTTTGGTCCAAGTGTTGAGA
67293 TGC
1 TGC
67296 ATCCACCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.16, C:0.18, G:0.31, T:0.35
Consensus pattern (23 bp):
TGCCTTTGGTCCAAGTGTTGAGA
Found at i:67737 original size:3 final size:3
Alignment explanation
Indices: 67729--67754 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
67719 TTCTGTAACT
67729 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
67755 TACTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:71029 original size:39 final size:39
Alignment explanation
Indices: 70944--71496 Score: 790
Period size: 39 Copynumber: 14.3 Consensus size: 39
70934 TGACAAAATT
* * *
70944 TGTTTCAAGGGAAACTGTCTCAAGAGAGAGAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
70980 TGTTTCGAGGGAAATTATCTCAAGCGAGACAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
71019 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* *
71059 TGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
71098 TGTTTCGAGGGAAACTATCTCAAGCAAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
71137 TGTTTCGAGGGAAACTATCTCAAGCGAGA-AAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
71175 TGTTTCAAGGAAAACTATCTCAAGAGAGACAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
71214 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
71253 TGTTTCAAGGGAAACTATCTCAAGCAAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
71292 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
71331 TGTTTCAAGGGAGACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
71370 TGTTTCAAGTGAAACTATCTCAAGAGAGATAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
71409 TGTTTCAAGGGAAATTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
71448 TATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
71487 TGTTTCAAGG
1 TGTTTCAAGG
71497 AAAAATAATC
Statistics
Matches: 468, Mismatches: 44, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
36 29 0.06
38 36 0.08
39 366 0.78
40 37 0.08
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:71522 original size:78 final size:78
Alignment explanation
Indices: 70944--71571 Score: 736
Period size: 78 Copynumber: 8.1 Consensus size: 78
70934 TGACAAAATT
* * * * * *
70944 TGTTTCAAGGGAAACTGTCTCAAGAGAGAGAAAA--TT-TGTTTCGAGGGAAATTATCTCAAGCG
1 TGTTTCAAGGGAAACTATCTCAAGCGAAATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCG
*
71006 AGACAAAATCTTT
66 AGACAAAATCTTC
* * * * *
71019 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGC
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAAATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGC
71084 GAGACAAAATCTTC
65 GAGACAAAATCTTC
* * *
71098 TGTTTCGAGGGAAACTATCTCAAGC-AAGATAAAATCTTTTGTTTCGAGGGAAACTATCTCAAGC
1 TGTTTCAAGGGAAACTATCTCAAGCGAA-ATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGC
71162 GAGA-AAAATCTTC
65 GAGACAAAATCTTC
* * * * *
71175 TGTTTCAAGGAAAACTATCTCAAGAGAGACAAAATCTTATGTTTCAAGGGAAACTATCTCAAGCG
1 TGTTTCAAGGGAAACTATCTCAAGCGAAATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCG
*
71240 AGATAAAATCTTC
66 AGACAAAATCTTC
*
71253 TGTTTCAAGGGAAACTATCTCAAGC-AAGACAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGC
1 TGTTTCAAGGGAAACTATCTCAAGCGAA-ATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGC
*
71317 GAGACAAAATCTTA
65 GAGACAAAATCTTC
* * * *
71331 TGTTTCAAGGGAGACTATCTCAAGCGAGATAAAATCTTCTGTTTCAAGTGAAACTATCTCAAGAG
1 TGTTTCAAGGGAAACTATCTCAAGCGAAATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCG
* *
71396 AGATAAAATATTC
66 AGACAAAATCTTC
* * * *
71409 TGTTTCAAGGGAAATTATCTCAAGCGAGATAAAATCTTCTATTTCAAGTGAAACTATCTCAAGCG
1 TGTTTCAAGGGAAACTATCTCAAGCGAAATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCG
*
71474 AGATAAAATCTTC
66 AGACAAAATCTTC
* * ** * * * ** *
71487 TGTTTCAAGGAAAAATAATCTTGAGTGAAAT-AAATCTTCTTATTTCGAGTAAAAAATATCTCAA
1 TGTTTCAAGGGAAACT-ATCTCAAGCGAAATAAAATCTTC-TGTTTCAAG-GGAAACTATCTCAA
71551 GCGAGAC-AAATC-T-
63 GCGAGACAAAATCTTC
71564 TGTTTCAA
1 TGTTTCAA
71572 TATGTAGTGA
Statistics
Matches: 497, Mismatches: 44, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
75 14 0.03
76 17 0.03
77 78 0.16
78 295 0.59
79 76 0.15
80 17 0.03
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (78 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAAATAAAATCTTCTGTTTCAAGGGAAACTATCTCAAGCG
AGACAAAATCTTC
Found at i:71707 original size:77 final size:76
Alignment explanation
Indices: 71581--71727 Score: 215
Period size: 77 Copynumber: 1.9 Consensus size: 76
71571 ATATGTAGTG
* * * *
71581 AAATGAAATGTCTTGTTTTGAATAAAATCCGTTTCAAGCGAGACAAATCTTGTTTTAAGAAAAAT
1 AAATGAAATGTCTTCTTTCGAATAAAATCCGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAAC
71646 AATCTTGAGTC
66 AATCTTGAGTC
* *
71657 AAATGAAATGTTCTTCTTTCGAGTAAAAAT-CGTCTCAAGTGAGACAAATCTTGTTTTAAGAAAA
1 AAATGAAATG-TCTTCTTTCGAAT-AAAATCCGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAA
71721 ACAATCT
64 ACAATCT
71728 CCAGTGAGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
76 10 0.16
77 48 0.76
78 5 0.08
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (76 bp):
AAATGAAATGTCTTCTTTCGAATAAAATCCGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAAC
AATCTTGAGTC
Found at i:79149 original size:39 final size:39
Alignment explanation
Indices: 79064--79617 Score: 772
Period size: 39 Copynumber: 14.3 Consensus size: 39
79054 TGACAAAATT
* * *
79064 TGTTTCAAGGGAAACTGTCTCAAGAGAGAGAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * * *
79100 TGTTTCGAGGGAAATTATTTCAACCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
79139 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* *
79179 TGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
79218 TTTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
79257 TGTTCCGAGGGAAACTATCTCAAGCGAGAAAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
79296 TGTTTCAAGGAAAACTATCTCAAGAGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
79335 TGTTTCAAAGGAAACTATCTCAAGCGAGATGAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
79374 TGTTTTAAGGGAAACTATCTCAAGCAAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
79413 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
79452 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
79491 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
79530 TGTTTCAAGGGAAACTATCTCAAGCAAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
79569 TATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
79608 TGTTTCAAGG
1 TGTTTCAAGG
79618 AAAAACAATC
Statistics
Matches: 462, Mismatches: 52, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
36 27 0.06
38 2 0.00
39 399 0.86
40 34 0.07
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:79683 original size:40 final size:41
Alignment explanation
Indices: 79157--79685 Score: 286
Period size: 39 Copynumber: 13.5 Consensus size: 41
79147 GGGAAACTTG
* * ** *
79157 TCTCAAGCGAGATAAAATCTT-TTGTTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
79196 TCTCAAGCGAGACAAAATCTTCTT-TTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * ** *
79235 TCTCAAGCGAGATAAAATCTT-TTGTTCCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * *
79274 TCTCAAGCGAGAAAAAATCTTC-TGTTTCAAG-GAAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * * *
79313 TCTCAAGAGAGACAAAATCTTC-TGTTTCAA--AGGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTA-AAAAATA
* ** *
79352 TCTCAAGCGAGATGAAATCTTCTGT-TTT-AAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCT-TATTTCAAGTAAAAAATA
* * * ** *
79391 TCTCAAGCAAGACAAAATCTTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
79430 TCTCAAGCGAGACAAAATCTTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
79469 TCTCAAGCGAGATAAAATCTT-ATGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
79508 TCTCAAGCGAGATAAAATATTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * *
79547 TCTCAAGCAAGATAAAATCTTC-TATTTCAAGT-GAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* *
79586 TCTCAAGCGAGATAAAATCTT-TTGTTTCAAGGAAAAACA-A
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAA-ATA
** * * *
79626 TCTTGAGTGAAAT-AAATCTTCTTATTTCAAGTAAAAAATG
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
*
79666 TCTCAAGCGAGA-CAAATCTT
1 TCTCAAGCGAGATAAAATCTT
79686 GTTTCAACAT
Statistics
Matches: 432, Mismatches: 40, Indels: 35
0.85 0.08 0.07
Matches are distributed among these distances:
37 1 0.00
38 5 0.01
39 378 0.88
40 47 0.11
41 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (41 bp):
TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
Found at i:79828 original size:77 final size:76
Alignment explanation
Indices: 79702--79848 Score: 188
Period size: 77 Copynumber: 1.9 Consensus size: 76
79692 ACATGTAGTG
* * * * * *
79702 AAATGAAATGTCTTGTTTTGAATAAAATCCGTTTGAAGCGAGCCAAATCTTGTTTTAAGAAAAAT
1 AAATGAAATGTCTTCTTTCGAATAAAATCCGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAAC
79767 AATCTTGAGTC
66 AATCTTGAGTC
* * *
79778 AAATGAAATGTTCTTCTTTCGAGTAAAAATCC-TCTCAAGCGAGACAAATCTTTTTTTAAGGAAA
1 AAATGAAATG-TCTTCTTTCGAAT-AAAATCCGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAA
79842 ACAATCT
64 ACAATCT
79849 CCAGTGAGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
76 10 0.17
77 43 0.72
78 7 0.12
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (76 bp):
AAATGAAATGTCTTCTTTCGAATAAAATCCGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAAC
AATCTTGAGTC
Found at i:85092 original size:39 final size:39
Alignment explanation
Indices: 84896--85415 Score: 590
Period size: 39 Copynumber: 13.3 Consensus size: 39
84886 TGACAAAATT
* *
84896 TGTTTCAAGGGAAAC--TCTCAAGAGAGAGAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
84930 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* **
84970 TATTTTGAGGGAAACATGTCATGTCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAAC---T-A--TCTCAAGCGAGATAAAATCTTC
* * * * * * *
85015 TGATTCGAGGGAAACATGTCTCAAGTGAGACAATATCTTT
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
*
85055 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
85094 TGTTTCGAGGGAAACTATCTCAAGAGAGAAAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
85133 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
85172 TTTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
85211 TGTTTCAAGGGAAACTATCTCAAGCAAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
85250 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
85289 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAA--TTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
85326 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATC--TTC
* * *
85367 AAGTATT--TGTGAAACTATCTCAAGCGAGATAAAATCTTC
1 -TGT-TTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
85406 TGTTTCAAGG
1 TGTTTCAAGG
85416 AAAAACAATC
Statistics
Matches: 423, Mismatches: 44, Indels: 33
0.85 0.09 0.07
Matches are distributed among these distances:
34 14 0.03
37 53 0.13
38 2 0.00
39 239 0.57
40 45 0.11
41 30 0.07
42 3 0.01
43 3 0.01
45 34 0.08
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:85626 original size:77 final size:76
Alignment explanation
Indices: 85500--85646 Score: 213
Period size: 77 Copynumber: 1.9 Consensus size: 76
85490 ACATGTAGTG
* * * * * *
85500 AAATGAAATGTCTTGTTTTGAATAAAATTCGTTTCAACCGAGACAAATCTTGTTTTAATAAAAAT
1 AAATGAAATGTCTTCTTTCGAATAAAAATCGTCTCAACCGAGACAAATCTTGTTTTAAGAAAAAC
85565 AATCTTGAGTC
66 AATCTTGAGTC
* *
85576 AAATGAAATGTCCTTCTTTCGAGTAAAAATCGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAA
1 AAATGAAATGT-CTTCTTTCGAATAAAAATCGTCTCAACCGAGACAAATCTTGTTTTAAGAAAAA
85641 CAATCT
65 CAATCT
85647 CCAGTGAGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
76 11 0.18
77 51 0.82
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (76 bp):
AAATGAAATGTCTTCTTTCGAATAAAAATCGTCTCAACCGAGACAAATCTTGTTTTAAGAAAAAC
AATCTTGAGTC
Found at i:93205 original size:39 final size:39
Alignment explanation
Indices: 93051--93599 Score: 781
Period size: 39 Copynumber: 14.3 Consensus size: 39
93041 TGACAAAATT
* * *
93051 TGTTTCAAGGGAAACTGTCTCAAGAGAGAGAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
93087 TGTTTCGAGGGAAATTAT-TCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
93125 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTT-
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* * *
93164 TTTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
93202 T-TTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
93240 TGTTTCGAGGGAAACTATCTCAAGCGAGAAAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
93279 TGTTTCAAGGAAAACTATCTCAAGAGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
93318 TGTTTCAAAGGAAACTATCTCAAGCGAGATAAAATCTT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
93356 TGTTTCAAGGGAAACTATCTCAAGCAAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
93395 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
93434 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
93473 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
93512 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* ** *
93551 TATTTCAAGTTAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
93590 TGTTTCAAGG
1 TGTTTCAAGG
93600 AAAAACAATC
Statistics
Matches: 468, Mismatches: 37, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
35 13 0.03
36 15 0.03
37 37 0.08
38 72 0.15
39 313 0.67
40 18 0.04
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:93665 original size:40 final size:41
Alignment explanation
Indices: 93143--93667 Score: 293
Period size: 39 Copynumber: 13.5 Consensus size: 41
93133 GGGAAACTTG
* ** *
93143 TCTCAAGCGAGATAAAATCTT-TT-TTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
93181 TCTCAAGCGAGACAAAATC-T-TT-TTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
93218 TCTCAAGCGAGATAAAATCTT-TTGTTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * *
93257 TCTCAAGCGAGAAAAAATCTTC-TGTTTCAAG-GAAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * * *
93296 TCTCAAGAGAGACAAAATCTTC-TGTTTCAA--AGGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTA-AAAAATA
* ** *
93335 TCTCAAGCGAGATAAAATC-T-TTGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * ** *
93373 TCTCAAGCAAGACAAAATCTTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
93412 TCTCAAGCGAGACAAAATCTTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
93451 TCTCAAGCGAGATAAAATCTT-ATGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
93490 TCTCAAGCGAGATAAAATATTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* *
93529 TCTCAAGCGAGATAAAATCTTC-TATTTCAAGT-TAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* *
93568 TCTCAAGCGAGATAAAATCTT-TTGTTTCAAGGAAAAACA-A
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAA-ATA
** * * *
93608 TCTTGAGTGAAAT-AAATCTTCTTATTTCAAGTAAAAAATG
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
*
93648 TCTCAAGCGAGA-CAAATCTT
1 TCTCAAGCGAGATAAAATCTT
93668 GTTTCAACAT
Statistics
Matches: 435, Mismatches: 35, Indels: 32
0.87 0.07 0.06
Matches are distributed among these distances:
37 36 0.08
38 54 0.12
39 303 0.70
40 42 0.10
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (41 bp):
TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
Found at i:99631 original size:18 final size:17
Alignment explanation
Indices: 99590--99631 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
99580 AATTATGATA
*
99590 TATTTA-TTAAATTGAT
1 TATTTACTTAAATTAAT
99606 TAATTTACTTCAAATTAAT
1 T-ATTTACTT-AAATTAAT
99625 TATTTAC
1 TATTTAC
99632 AGAAATCCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 1 0.05
17 5 0.23
18 8 0.36
19 8 0.36
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (17 bp):
TATTTACTTAAATTAAT
Found at i:101447 original size:39 final size:39
Alignment explanation
Indices: 101311--101861 Score: 808
Period size: 39 Copynumber: 14.3 Consensus size: 39
101301 TGACAAAATT
* * *
101311 TGTTTCAAGGGAAACTGTCTCAAGAGAGAGAAAA-CTT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
101348 TGTTTCAAGGGAAATTATTTCAACCGAGACAAAATCTT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
101386 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* *
101426 TGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
101465 T-TTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
101503 TGTTTCGAGGGAAACTATCTCAAGCGAGA-AAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
101541 TGTTTCAAGGAAAACTATCTCAAGAGAGACAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
101580 TGTTTCAA-GGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
101618 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
101657 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
101696 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
101735 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
101774 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* ** *
101813 TATTTCAAGTTAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
101852 TGTTTCAAGG
1 TGTTTCAAGG
101862 AAAAACAATC
Statistics
Matches: 470, Mismatches: 38, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
37 28 0.06
38 120 0.26
39 307 0.65
40 15 0.03
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:109518 original size:39 final size:39
Alignment explanation
Indices: 109437--109990 Score: 736
Period size: 39 Copynumber: 14.3 Consensus size: 39
109427 TGACAAAATT
* * ** *
109437 TGTTTCAAGAGAAACTGTCTCAAGATAGAGAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* * * * * *
109473 TGTTTCGAGGGAAATTATTTCAACCTAAACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* * * *
109512 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGACAAAATCTTC
*
109552 TGTTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* * * *
109591 TTTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* *
109630 TGTTTCGAGGGAAACTATCTCAAGCGAGAAAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* *
109669 TGTTTCAAGGAAAACTATCTCAAGAGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* * *
109708 TGTTTCAAAGGAAACTATCTCAAGTGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
*
109747 TGTTTCAAGGGAAACTATCTCAAGCAAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
109786 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* *
109825 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* *
109864 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
*
109903 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
* ** * *
109942 TATTTCAAGTTAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
109981 TGTTTCAAGG
1 TGTTTCAAGG
109991 AAAAACAATC
Statistics
Matches: 464, Mismatches: 50, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
36 25 0.05
38 2 0.00
39 405 0.87
40 32 0.07
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
Found at i:110056 original size:40 final size:41
Alignment explanation
Indices: 109530--110058 Score: 302
Period size: 39 Copynumber: 13.5 Consensus size: 41
109520 GGGAAACTTG
* * ** *
109530 TCTCAAGCGAGATAAAATCTT-TTGTTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
109569 TCTCAAGCGAGACAAAATCTTCTT-TTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
109608 TCTCAAGCGAGATAAAATCTT-TTGTTTCGAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * *
109647 TCTCAAGCGAGAAAAAATCTTC-TGTTTCAAG-GAAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * * *
109686 TCTCAAGAGAGACAAAATCTTC-TGTTTCAA--AGGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTA-AAAAATA
* * ** *
109725 TCTCAAGTGAGATAAAATCTTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * * ** *
109764 TCTCAAGCAAGACAAAATCTTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
109803 TCTCAAGCGAGACAAAATCTTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
109842 TCTCAAGCGAGATAAAATCTT-ATGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* * ** *
109881 TCTCAAGCGAGATAAAATATTC-TGTTTCAAG-GGAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* *
109920 TCTCAAGCGAGATAAAATCTTC-TATTTCAAGT-TAAACTA
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
* *
109959 TCTCAAGCGAGATAAAATCTT-TTGTTTCAAGGAAAAACA-A
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAA-ATA
** * * * *
109999 TCTTGAGTGAAAT-AAATCTTCTTTTTTCAAGTAAAAAATG
1 TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
*
110039 TCTCAAGCGAGA-CAAATCTT
1 TCTCAAGCGAGATAAAATCTT
110059 GTTTCAACAT
Statistics
Matches: 440, Mismatches: 36, Indels: 27
0.87 0.07 0.05
Matches are distributed among these distances:
38 2 0.00
39 394 0.90
40 44 0.10
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (41 bp):
TCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAATA
Found at i:114007 original size:2 final size:2
Alignment explanation
Indices: 114002--114031 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
113992 ATAGCATAAA
114002 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
114032 GCTAAGTACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:115473 original size:19 final size:19
Alignment explanation
Indices: 115413--115473 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
115403 TCTTTTGTTT
115413 CGAGGGAAACTATCTCAAG
1 CGAGGGAAACTATCTCAAG
** ****
115432 CGAGACAAATCT-TCTGTTT
1 CGAGGGAAA-CTATCTCAAG
115451 CGAGGGAAACTATCTCAAG
1 CGAGGGAAACTATCTCAAG
115470 CGAG
1 CGAG
115474 AAAAAATCTT
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
18 2 0.07
19 24 0.86
20 2 0.07
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (19 bp):
CGAGGGAAACTATCTCAAG
Found at i:115831 original size:39 final size:39
Alignment explanation
Indices: 115248--115803 Score: 696
Period size: 39 Copynumber: 14.3 Consensus size: 39
115238 TGACAAAATT
* * *
115248 TGTTTCAA-GGAAACTGTCTCAAGAGAGAGAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
115283 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* **
115323 TATTTTGAGGGAAACATGTCATGTCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAAC---T-A--TCTCAAGCGAGATAAAATCTTC
* * * * * * *
115368 TGATTCGAGGGAAACATGTCTCAAGTGAGACAATATCTTT
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* *
115408 TGTTTCGAGGGAAACTATCTCAAGCGAGA-CAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
115446 TGTTTCGAGGGAAACTATCTCAAGCGAGAAAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
115485 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
115524 TTTTTCAAGGGAAACTATCTCAAGCGAGACAAAA--TTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
115561 T-TTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
115599 TGTTTCAAGGGAAACTATCTCAAGCAAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
115638 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
115677 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
115716 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
115755 TATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
115794 TGTTTCAAGG
1 TGTTTCAAGG
115804 AAAAACAATC
Statistics
Matches: 467, Mismatches: 40, Indels: 24
0.88 0.08 0.05
Matches are distributed among these distances:
35 7 0.01
36 38 0.08
37 21 0.04
38 39 0.08
39 281 0.60
40 45 0.10
42 1 0.00
43 1 0.00
45 34 0.07
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:119559 original size:20 final size:18
Alignment explanation
Indices: 119534--119587 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
119524 AAAAAATGAC
119534 AATGTAAATACAAACGTAAA
1 AATGTAAATACAAACGT--A
* *
119554 AATGTAAAGATGCAAATGTA
1 AATGT-AA-ATACAAACGTA
119574 AATGTAAATACAAA
1 AATGTAAATACAAA
119588 AGGTATCGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 6 0.21
19 2 0.07
20 11 0.38
21 2 0.07
22 8 0.28
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.22
Consensus pattern (18 bp):
AATGTAAATACAAACGTA
Found at i:123565 original size:39 final size:39
Alignment explanation
Indices: 123479--124032 Score: 790
Period size: 39 Copynumber: 14.3 Consensus size: 39
123469 TGACAAAATT
* * *
123479 TGTTTCAAGGGAAACTGTCTCAAGAGAGAGAAAA--TT-
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
123515 TGTTTCGAGGGAAATTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
123554 TGTTTCGAGGGAAACTTGTCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAAC-TATCTCAAGCGAGATAAAATCTTC
* * *
123594 TATTTCGAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * * *
123633 TTTTTCGAGGGAAACTATCTCAAGTGACATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
123672 TGTTTCGAGGGAAACTATCTCAAGCGAGAAAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * * *
123711 TGTTCCAAGGAAAACTATCTCAAGAGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
123750 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
123789 TGTTTCAAGGGAAACTATCTCAAGCAAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
123828 TGTTTCAAGGGAAACTATCTCAAGCGAGACAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
*
123867 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTA
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* *
123906 TGTTTCAAGGGAAATTATCTCAAGCGAGATAAAATATTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
123945 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
* * *
123984 TATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
124023 TGTTTCAAGG
1 TGTTTCAAGG
124033 AAAAACAATC
Statistics
Matches: 467, Mismatches: 47, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
36 29 0.06
38 2 0.00
39 401 0.86
40 35 0.07
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCTTC
Found at i:124098 original size:40 final size:41
Alignment explanation
Indices: 123530--124100 Score: 314
Period size: 39 Copynumber: 14.6 Consensus size: 41
123520 CGAGGGAAAT
* * * ** **
123530 TATCTCAAGCGAGACAAAATCTTC-TGTTTCGAGGGAAACT
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * ** *
123570 TGTCTCAAGCGAGATAAAATCTT-TTATTTCGAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * ** *
123609 TATCTCAAGCGAGACAAAATCTTCTT-TTTCGAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * * * ** *
123648 TATCTCAAGTGACATAAAATCTT-TTGTTTCGAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * * * *
123687 TATCTCAAGCGAGAAAAAATCTTC-TGTTCCAAG-GAAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * * ** *
123726 TATCTCAAGAGAGACAAAATCTTC-TGTTTCAAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* ** *
123765 TATCTCAAGCGAGATAAAATCTTC-TGTTTCAAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * * ** *
123804 TATCTCAAGCAAGACAAAATCTTC-TGTTTCAAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * ** *
123843 TATCTCAAGCGAGACAAAATCTTC-TGTTTCAAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * ** *
123882 TATCTCAAGCGAGATAAAATCTT-ATGTTTCAAG-GGAAAT
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* * ** *
123921 TATCTCAAGCGAGATAAAATATTC-TGTTTCAAG-GGAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* *
123960 TATCTCAAGCGAGATAAAATCTTC-TATTTCAAGT-GAAAC
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* *
123999 TATCTCAAGCGAGATAAAATCTT-TTGTTTCAAGGAAAAACA
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAA-A
** * *
124040 -ATCTTGAGTGAAAT-AAATCTTCTTATTTCAAGTAAAAAA
1 TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
* *
124079 TGTCTCAAGCGAGA-CAAATCTT
1 TATCTCAAGCGAGATAAAATCTT
124101 GTTTCAACAT
Statistics
Matches: 471, Mismatches: 47, Indels: 26
0.87 0.09 0.05
Matches are distributed among these distances:
38 2 0.00
39 396 0.84
40 73 0.15
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (41 bp):
TATCTCAAGCGAGATAAAATCTTCTTATTTCAAGTAAAAAA
Found at i:124232 original size:77 final size:76
Alignment explanation
Indices: 124117--124263 Score: 206
Period size: 77 Copynumber: 1.9 Consensus size: 76
124107 ACATGTAGTG
* * * *
124117 AAATGAAATGTCTTGTTTTGAATAAAATCTGTTTCAAGCGAGACAAATATTGTTTTAAGAAAAAT
1 AAATGAAATGTCTTCTTTCGAATAAAATCTGTCTCAAGCGAGACAAATATTGTTTTAAGAAAAAC
124182 AATCTTGAGTC
66 AATCTTGAGTC
* * *
124193 AAATGAAATGTTCTTCTTTCGAGTAAAAATC-GTCTCAAGCGAGACAAATCTTGTTTTAAGGAAA
1 AAATGAAATG-TCTTCTTTCGAAT-AAAATCTGTCTCAAGCGAGACAAATATTGTTTTAAGAAAA
124257 ACAATCT
64 ACAATCT
124264 CCAGTGAGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
76 10 0.16
77 46 0.74
78 6 0.10
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (76 bp):
AAATGAAATGTCTTCTTTCGAATAAAATCTGTCTCAAGCGAGACAAATATTGTTTTAAGAAAAAC
AATCTTGAGTC
Found at i:133227 original size:20 final size:19
Alignment explanation
Indices: 133204--133248 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
133194 TATTTTTTAT
* *
133204 TATTTATTTATTTTTAATAA
1 TATTTATATATATTTAAT-A
*
133224 TATTTATATGTATTTAATA
1 TATTTATATATATTTAATA
133243 TATTTA
1 TATTTA
133249 ATAATAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTTATATATATTTAATA
Found at i:133238 original size:26 final size:30
Alignment explanation
Indices: 133199--133254 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
133189 AATTATATTT
*
133199 TTTATTATTTATTT-AT-T-TTTAATAATA
1 TTTATTATGTATTTAATATATTTAATAATA
133226 TTTA-TATGTATTTAATATATTTAATAATA
1 TTTATTATGTATTTAATATATTTAATAATA
133255 ATAGTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 8 0.32
27 6 0.24
28 1 0.04
29 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (30 bp):
TTTATTATGTATTTAATATATTTAATAATA
Found at i:133255 original size:3 final size:3
Alignment explanation
Indices: 133247--133347 Score: 157
Period size: 3 Copynumber: 33.7 Consensus size: 3
133237 TTAATATATT
* *
133247 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
133295 TAA TAG TAA TAA TAA TAA TAA TAT TAA TAA TAA TAA TAT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
133343 TAA TA
1 TAA TA
133348 TGGATAAAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 88 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:134051 original size:227 final size:226
Alignment explanation
Indices: 133665--134188 Score: 944
Period size: 227 Copynumber: 2.3 Consensus size: 226
133655 GAATTATGCC
* * *
133665 AAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
133729 TATGAAC-TTCTCCGGAAAAGATAATCCATCAATTGATGGATTCAGGTAAAAGGTTGAACAAATT
66 TATGAACTTTCTCCGGAAAAAATAATCCATCAAGTGATGAATTCAGGTAAAAGGTTGAACAAATT
133793 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGA
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGA
133858 AAAAATGATCCATCAAGTGATGAATTCAGGT
196 AAAAATGATCCATCAAGTGATGAATTCAGGT
133889 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
133954 TATGAACTTTTTCTGGAAAAAAATGATCCATCAAGTGATGAATTCAGGTAAAAGGTTGAACAAAT
66 TATGAACTTTCTCCGG-AAAAAATAATCCATCAAGTGATGAATTCAGGTAAAAGGTTGAACAAAT
134019 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
130 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGG
134084 AAAAAATGATCCATCAAGTGATGAATTCAGGT
195 AAAAAATGATCCATCAAGTGATGAATTCAGGT
134116 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
134181 TATGAACT
66 TATGAACT
134189 CGAACTGGAA
Statistics
Matches: 288, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
224 4 0.01
225 64 0.22
226 6 0.02
227 214 0.74
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (226 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCCGGAAAAAATAATCCATCAAGTGATGAATTCAGGTAAAAGGTTGAACAAATT
CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTGGA
AAAAATGATCCATCAAGTGATGAATTCAGGT
Found at i:134207 original size:113 final size:113
Alignment explanation
Indices: 133665--134188 Score: 944
Period size: 113 Copynumber: 4.6 Consensus size: 113
133655 GAATTATGCC
* * *
133665 AAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * * *
133729 TATGAAC-TTCTCCGGAAAAGATAATCCATCAATTGATGGATTCAGGT
66 TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
133776 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
133841 TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
66 TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
133889 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
133954 TATGAACTTTTTCTGGAAAAAAATGATCCATCAAGTGATGAATTCAGGT
66 TATGAACTTTTTCTGG-AAAAAATGATCCATCAAGTGATGAATTCAGGT
134003 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
134068 TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
66 TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
134116 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
134181 TATGAACT
66 TATGAACT
134189 CGAACTGGAA
Statistics
Matches: 401, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
111 4 0.01
112 64 0.16
113 220 0.55
114 113 0.28
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTTTCTGGAAAAAATGATCCATCAAGTGATGAATTCAGGT
Found at i:135144 original size:83 final size:82
Alignment explanation
Indices: 134940--135222 Score: 460
Period size: 83 Copynumber: 3.4 Consensus size: 82
134930 CCTACTGAAT
** *
134940 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGGACACATTCATCTTTTAAACTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT-GACACATTCATCTTCCAAATTCAA
*
135005 TGATT-GTTTTGTCAAAT
65 TGATTGGTTTTGTCAAAC
*
135022 CAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG-ACACATTCATCTTCCAAATTCAA
135087 TGATTGGTTTTGTCAAAC
65 TGATTGGTTTTGTCAAAC
* *
135105 CAGATCAGATAACTCAAATAACACTTCCAGAAGATGCTATTGGCACATTCATCTTCCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGACACATTCATCTTCCAAATTCAA
*
135170 TGATTGGTTCTGTCAAAC
65 TGATTGGTTTTGTCAAAC
135188 CAGATCAGATAACTCAAAGAACACTTCCAGAAGAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGAT
135223 TGGATTTGTC
Statistics
Matches: 188, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
81 1 0.01
82 64 0.34
83 121 0.64
84 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.28
Consensus pattern (82 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGACACATTCATCTTCCAAATTCAAT
GATTGGTTTTGTCAAAC
Found at i:135234 original size:49 final size:49
Alignment explanation
Indices: 135171--135271 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
135161 CAAATTCAAT
135171 GATTGGTTCTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAA
1 GATTGGTTCTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAA
135220 GATTGGATT-TGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAA
1 GATTGG-TTCTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAA
135269 GAT
1 GAT
135272 GCTATTGGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 49 0.96
50 2 0.04
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (49 bp):
GATTGGTTCTGTCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAA
Found at i:136462 original size:17 final size:16
Alignment explanation
Indices: 136429--136470 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
136419 ACCCCCTTTC
*
136429 TTTTTCTTCTCTTTTT
1 TTTTTCTTCTCTATTT
*
136445 TTTTTCATTTTCTATTT
1 TTTTTC-TTCTCTATTT
136462 TTTTT-TTCT
1 TTTTTCTTCT
136471 TTTTTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 3 0.14
16 6 0.27
17 13 0.59
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCTTCTCTATTT
Found at i:136473 original size:18 final size:18
Alignment explanation
Indices: 136435--136488 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
136425 TTTCTTTTTC
136435 TTCTCTTTTTTTTTTCATT
1 TTCTCTTTTTTTTTTC-TT
*
136454 TTCTATTTTTTTTTTCTT
1 TTCTCTTTTTTTTTTCTT
* *
136472 TTTTCTTCTTTTTTTCT
1 TTCTCTTTTTTTTTTCT
136489 CTTCAAGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 16 0.52
19 15 0.48
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (18 bp):
TTCTCTTTTTTTTTTCTT
Found at i:136475 original size:20 final size:19
Alignment explanation
Indices: 136425--136491 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 19
136415 CTTGACCCCC
136425 TTTCTTTTTCTTCTCTTTTTTT
1 TTTC-TTTT-TTCT-TTTTTTT
*
136447 TTTC-ATTTTCTATTTTTTT
1 TTTCTTTTTTCT-TTTTTTT
136466 TTTCTTTTTTCTTCTTTTTT
1 TTTCTTTTTTCTT-TTTTTT
*
136486 TCTCTT
1 TTTCTT
136492 CAAGCATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 16 0.41
20 19 0.49
22 4 0.10
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTCTTTTTTCTTTTTTTT
Found at i:136486 original size:13 final size:13
Alignment explanation
Indices: 136424--136492 Score: 52
Period size: 13 Copynumber: 5.1 Consensus size: 13
136414 CCTTGACCCC
*
136424 CTTTCTTTTTCTT
1 CTTTTTTTTTCTT
136437 CTCTTTTTTTT-TT
1 CT-TTTTTTTTCTT
136450 CATTTTCTATTTT-TT
1 C-TTTT-T-TTTTCTT
*
136465 TTTTCTTTTTTCTT
1 CTTT-TTTTTTCTT
*
136479 CTTTTTTTCTCTT
1 CTTTTTTTTTCTT
136492 C
1 C
136493 AAGCATAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
13 21 0.46
14 18 0.39
15 7 0.15
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (13 bp):
CTTTTTTTTTCTT
Found at i:149301 original size:3 final size:3
Alignment explanation
Indices: 149295--149390 Score: 133
Period size: 3 Copynumber: 32.7 Consensus size: 3
149285 TATATAGTAG
* *
149295 TAA TAA TAA T-A TAA TAA -AA TAA TAA TAA TAC TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
149341 TAG TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
149389 TA
1 TA
149391 TGGATAAAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
2 4 0.05
3 77 0.95
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:154066 original size:24 final size:25
Alignment explanation
Indices: 154033--154095 Score: 110
Period size: 25 Copynumber: 2.5 Consensus size: 25
154023 AAAACATCTT
154033 TTTTCTGTTTTCATA-TTTTCAATTA
1 TTTT-TGTTTTCATATTTTTCAATTA
154058 TTTTTGTTTTCATATTTTTCAATTA
1 TTTTTGTTTTCATATTTTTCAATTA
154083 TTTTTGTTTTCAT
1 TTTTTGTTTTCAT
154096 TTTCCAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
24 10 0.27
25 27 0.73
ACGTcount: A:0.17, C:0.10, G:0.05, T:0.68
Consensus pattern (25 bp):
TTTTTGTTTTCATATTTTTCAATTA
Found at i:155020 original size:2 final size:2
Alignment explanation
Indices: 155013--155039 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
155003 ACCTAAAGCT
155013 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
155040 TAGAAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:157256 original size:35 final size:35
Alignment explanation
Indices: 157209--157320 Score: 161
Period size: 35 Copynumber: 3.2 Consensus size: 35
157199 AAGACATTCC
*
157209 TCAATTTCATTCTAAACCCCAAATTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
* *
157244 TCAATTTTATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
* * * *
157279 TCAATTACATTCTAAAACCCAAATTCTAAAATATT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
157314 TCAATTT
1 TCAATTT
157321 AAGGAGGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.42, C:0.21, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:158059 original size:57 final size:57
Alignment explanation
Indices: 157989--158174 Score: 309
Period size: 57 Copynumber: 3.3 Consensus size: 57
157979 CACAGTTTCC
* **
157989 AAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
1 AAAATCTCGTTGCGATAACACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
*
158046 AAAATCTCGTTGCGATAACATTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
1 AAAATCTCGTTGCGATAACACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
* * *
158103 AAAATCACGTTACGATAACACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTA
1 AAAATCTCGTTGCGATAACACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
158160 AAAATCTCGTTGCGA
1 AAAATCTCGTTGCGA
158175 ATTTGAAAAT
Statistics
Matches: 119, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 119 1.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (57 bp):
AAAATCTCGTTGCGATAACACTGTTTACCTATATCGGTAATTAGCGTTGCGAATTTG
Found at i:158172 original size:20 final size:20
Alignment explanation
Indices: 158146--158194 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
158136 TCGGTAATTA
158146 GCGTTGCGAATTTAAAAATC
1 GCGTTGCGAATTTAAAAATC
* *
158166 TCGTTGCGAATTTGAAAATC
1 GCGTTGCGAATTTAAAAATC
158186 GCGTTGCGA
1 GCGTTGCGA
158195 TAGTACTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (20 bp):
GCGTTGCGAATTTAAAAATC
Found at i:158247 original size:20 final size:20
Alignment explanation
Indices: 158219--158291 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
158209 TGTATCGGTA
158219 ATTAGCGTTGCGATTTACAT
1 ATTAGCGTTGCGATTTACAT
* *
158239 ATTATCGTTGCAATTTACAT
1 ATTAGCGTTGCGATTTACAT
* *
158259 ATTCGCGTTGCGATTAATC-T
1 ATTAGCGTTGCGATTTA-CAT
*
158279 ATTCGCGTTGCGA
1 ATTAGCGTTGCGA
158292 ATTTGGAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 45 0.98
21 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (20 bp):
ATTAGCGTTGCGATTTACAT
Found at i:158247 original size:77 final size:77
Alignment explanation
Indices: 158084--158272 Score: 240
Period size: 77 Copynumber: 2.5 Consensus size: 77
158074 CTATATCGGT
* * *
158084 AATTAGCGTTGCGAATTTGAAAATCACGTTACGATAACACTGTTTACCTATATCGGTAATTAGCG
1 AATTATCGTTGCGAATTTGAAAATCGCGTTGCGATAACACTGTTTACCTATATCGGTAATTAGCG
158149 TTGCGAATTTAA
66 TTGCGAATTTAA
* * ** *
158161 AAATCTCGTTGCGAATTTGAAAATCGCGTTGCGATAGTACTGTTTACCTGTATCGGTAATTAGCG
1 AATTATCGTTGCGAATTTGAAAATCGCGTTGCGATAACACTGTTTACCTATATCGGTAATTAGCG
158226 TTGCG-ATTTACA
66 TTGCGAATTTA-A
* *
158238 TATTATCGTTGC-AATTT-ACATATTCGCGTTGCGAT
1 AATTATCGTTGCGAATTTGA-A-AATCGCGTTGCGAT
158273 TAATCTATTC
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
75 1 0.01
76 11 0.11
77 85 0.88
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (77 bp):
AATTATCGTTGCGAATTTGAAAATCGCGTTGCGATAACACTGTTTACCTATATCGGTAATTAGCG
TTGCGAATTTAA
Found at i:158386 original size:56 final size:58
Alignment explanation
Indices: 158283--158405 Score: 187
Period size: 56 Copynumber: 2.2 Consensus size: 58
158273 TAATCTATTC
* *
158283 GCGTTGCGAATTTGGAAAATCGCGTTGTGATAACACTGTTTACCTATATCGGTAATTA
1 GCGTTGCGAATTTGGAAAATCGAGTTGCGATAACACTGTTTACCTATATCGGTAATTA
* **
158341 GCGTTGCGAATTT-GTAAATCGAGTT-CGATAGTACTGTTTACCTATATCGGTAATTA
1 GCGTTGCGAATTTGGAAAATCGAGTTGCGATAACACTGTTTACCTATATCGGTAATTA
158397 GCGTTGCGA
1 GCGTTGCGA
158406 TTTACATATT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 37 0.62
57 10 0.17
58 13 0.22
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (58 bp):
GCGTTGCGAATTTGGAAAATCGAGTTGCGATAACACTGTTTACCTATATCGGTAATTA
Found at i:158610 original size:192 final size:192
Alignment explanation
Indices: 158283--158636 Score: 593
Period size: 192 Copynumber: 1.8 Consensus size: 192
158273 TAATCTATTC
* * * *
158283 GCGTTGCGAATTTGGAAAATCGCGTTGTGATAACACTGTTTACCTATATCGGTAATTAGCGTTGC
1 GCGTTGCGAATTTGGAAAATCGCATTGCGATAACACTGGTTACATATATCGGTAATTAGCGTTGC
* *
158348 GAATTTGTAAATCGAGTTCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGATTTACAT
66 GAATTTGAAAATCGAGTTCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGATTTACAT
*
158413 ATTCGCGTTGCGAATTTGGAAAATCGCGTTGCGGTAACACTGTTTGTATATATCGGTAATTA
131 ATTCGCGTTGCGAATTTAGAAAATCGCGTTGCGGTAACACTGTTTGTATATATCGGTAATTA
** *
158475 GCGTTGCGAATTT-GAAAATCGCATTGCGATAGTACTGGTTACATATATTGGTAATTAGCGTTGC
1 GCGTTGCGAATTTGGAAAATCGCATTGCGATAACACTGGTTACATATATCGGTAATTAGCGTTGC
*
158539 GAATTTGAAAATCGCGTTGCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGATTTACA
66 GAATTTGAAAATCGAGTT-CGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGATTTACA
158604 TATTCGCGTTGCGAATTTAGAAAATCGCGTTGC
130 TATTCGCGTTGCGAATTTAGAAAATCGCGTTGC
158637 AATTTTGGAA
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
191 60 0.40
192 90 0.60
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (192 bp):
GCGTTGCGAATTTGGAAAATCGCATTGCGATAACACTGGTTACATATATCGGTAATTAGCGTTGC
GAATTTGAAAATCGAGTTCGATAATACTGTTTACCTATATCGGTAATTAGCGTTGCGATTTACAT
ATTCGCGTTGCGAATTTAGAAAATCGCGTTGCGGTAACACTGTTTGTATATATCGGTAATTA
Found at i:158617 original size:57 final size:57
Alignment explanation
Indices: 158417--158597 Score: 272
Period size: 57 Copynumber: 3.2 Consensus size: 57
158407 TTACATATTC
* * **
158417 GCGTTGCGAATTTGGAAAATCGCGTTGCGGTAACACTGTTTGTATATATCGGTAATTA
1 GCGTTGCGAATTT-GAAAATCGCGTTGCGATAATACTGTTTACATATATCGGTAATTA
* * * *
158475 GCGTTGCGAATTTGAAAATCGCATTGCGATAGTACTGGTTACATATATTGGTAATTA
1 GCGTTGCGAATTTGAAAATCGCGTTGCGATAATACTGTTTACATATATCGGTAATTA
*
158532 GCGTTGCGAATTTGAAAATCGCGTTGCGATAATACTGTTTACCTATATCGGTAATTA
1 GCGTTGCGAATTTGAAAATCGCGTTGCGATAATACTGTTTACATATATCGGTAATTA
158589 GCGTTGCGA
1 GCGTTGCGA
158598 TTTACATATT
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 97 0.88
58 13 0.12
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.34
Consensus pattern (57 bp):
GCGTTGCGAATTTGAAAATCGCGTTGCGATAATACTGTTTACATATATCGGTAATTA
Found at i:158631 original size:21 final size:21
Alignment explanation
Indices: 158589--158641 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
158579 TCGGTAATTA
* *
158589 GCGTTGCG-ATTTACATATTC
1 GCGTTGCGAATTTACAAAATC
*
158609 GCGTTGCGAATTTAGAAAATC
1 GCGTTGCGAATTTACAAAATC
158630 GCGTTGC-AATTT
1 GCGTTGCGAATTT
158642 TGGAACCTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (21 bp):
GCGTTGCGAATTTACAAAATC
Found at i:159168 original size:27 final size:28
Alignment explanation
Indices: 159133--159190 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
159123 ATATTCTTAC
*
159133 TATTGAAAAATTTTC-ATGTCTTTAAATA
1 TATTGAAAAATTATCAATGT-TTTAAATA
159161 TATT-AAAAATTATCATATGTTTTAAATA
1 TATTGAAAAATTATCA-ATGTTTTAAATA
159189 TA
1 TA
159191 AAAAGTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 9 0.33
28 14 0.52
29 4 0.15
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (28 bp):
TATTGAAAAATTATCAATGTTTTAAATA
Found at i:159307 original size:35 final size:33
Alignment explanation
Indices: 159244--159350 Score: 126
Period size: 34 Copynumber: 3.2 Consensus size: 33
159234 AAAAAACAGA
* * *
159244 AATTGAAGTA-TTTAGAATTTGAGTTTTAGAATG
1 AATTGAATTACTTTGGAATTTG-GGTTTAGAATG
*
159277 TAATTGAATTATTTTGGAATTTAGGGTTTAGAATG
1 -AATTGAATTACTTTGGAATTT-GGGTTTAGAATG
* *
159312 AATTGAATTACTTTGGAATTTTGGTTTATAATG
1 AATTGAATTACTTTGGAATTTGGGTTTAGAATG
159345 AATTGA
1 AATTGA
159351 GGATTGTTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
33 16 0.25
34 29 0.45
35 19 0.29
36 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.21, T:0.45
Consensus pattern (33 bp):
AATTGAATTACTTTGGAATTTGGGTTTAGAATG
Done.