Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008331.1 Hibiscus syriacus cultivar Beakdansim tig00111044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68068

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1337--1380
23
2.0
23
90
4
72
56
15
15
11
1.66
6998--7040
23
1.9
23
90
4
70
53
16
18
11
1.72
6997--7048
24
2.3
22
83
6
68
57
13
19
9
1.63
8496--8607
35
3.2
35
90
1
170
28
35
3
32
1.74
9055--9081
11
2.5
11
100
0
54
81
0
18
0
0.69
12588--12700
35
3.2
35
87
1
145
28
34
3
33
1.74
14607--14718
35
3.2
35
88
1
152
25
35
5
33
1.79
14868--14908
10
3.9
11
81
9
50
12
19
0
68
1.21
16638--16749
35
3.2
35
88
1
161
28
34
3
33
1.75
16898--16938
10
3.9
11
81
9
50
12
19
0
68
1.21
20243--20285
23
1.9
21
81
13
50
32
18
13
34
1.90
23842--23908
28
2.4
26
82
7
71
64
13
10
11
1.51
30646--30675
13
2.4
13
94
5
53
43
0
30
26
1.55
37816--37855
13
3.0
13
81
3
53
0
15
5
80
0.88
38056--38086
16
2.0
16
93
6
55
61
0
25
12
1.32
38282--38306
13
1.9
13
100
0
50
40
0
36
24
1.55
39167--39206
18
2.1
20
86
9
57
65
0
10
25
1.24
39617--39659
20
2.2
20
87
4
61
46
4
11
37
1.61
42977--43015
19
2.0
21
90
10
64
10
15
5
69
1.34
42971--43018
19
2.6
18
75
21
53
8
18
6
66
1.39
43281--43320
19
2.0
20
86
13
57
67
0
10
22
1.20
43735--43780
18
2.5
18
89
3
65
41
6
17
34
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44211--46441
758
2.9
756
90
3
3259
35
15
18
30
1.92
47294--47318
10
2.5
10
100
0
50
0
8
0
92
0.40
49555--49581
10
2.7
10
100
0
54
22
40
11
25
1.87
49555--49594
20
2.0
20
85
5
53
20
37
10
32
1.85
65848--65887
19
2.0
20
90
4
64
20
15
0
65
1.28
65844--65890
19
2.6
18
83
12
60
19
14
0
65
1.26
66109--66164
19
2.9
19
78
5
60
76
3
16
3
1.06

Tables:   1

The End!