genome.fa.s8332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008332.1 Hibiscus syriacus cultivar Beakdansim tig00111045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  268411

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878--907	13	2.4	13	94	5	53	43	0	30	26	1.55
8024--8063	13	3.0	13	81	3	53	0	15	5	80	0.88
8264--8294	16	2.0	16	93	6	55	61	0	25	12	1.32
8490--8514	13	1.9	13	100	0	50	40	0	36	24	1.55
9377--9417	19	2.1	20	86	13	59	65	0	9	24	1.22
9829--9871	20	2.2	20	87	4	61	46	4	11	37	1.61
13502--13541	19	2.0	20	86	13	57	67	0	10	22	1.20
13955--14004	19	2.5	20	87	3	66	42	6	18	34	1.74
14812--14847	17	2.1	17	89	0	54	38	5	19	36	1.75
14436--16659	755	2.9	757	90	3	3248	35	15	18	30	1.92
19793--19819	10	2.7	10	100	0	54	22	40	11	25	1.87
19793--19832	20	2.0	20	85	5	53	20	37	10	32	1.85
25078--25103	5	5.2	5	100	0	52	0	19	0	80	0.71
36480--36543	19	3.2	20	77	18	64	76	4	15	3	1.08
36480--36536	19	3.0	18	85	10	69	77	5	15	1	1.03
52162--52319	74	2.1	73	82	9	187	22	17	19	41	1.91
54837--54876	19	2.0	20	90	4	64	20	15	0	65	1.28
54833--54879	19	2.6	18	83	12	60	19	14	0	65	1.26
55868--55905	14	2.5	15	91	8	60	81	0	15	2	0.80
60823--60863	11	3.6	12	77	9	50	0	14	12	73	1.11
60816--60863	10	4.5	10	78	14	51	0	14	14	70	1.16
60823--60862	12	3.5	11	86	10	53	0	15	10	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61629--61730	50	2.2	47	81	15	115	50	14	1	33	1.55
64811--64835	13	1.9	13	100	0	50	40	4	8	48	1.51
68242--68284	23	1.9	21	81	13	50	32	18	11	37	1.87
70909--70954	19	2.3	20	88	3	67	39	13	6	41	1.70
70909--70957	20	2.5	19	90	3	71	36	12	6	44	1.67
70923--70961	20	2.1	19	90	9	62	46	7	5	41	1.55
71371--71417	23	2.0	23	84	8	60	23	10	0	65	1.23
73078--73132	24	2.3	25	81	6	60	29	21	16	32	1.95
78722--78752	2	15.5	2	100	0	62	51	0	0	48	1.00
79048--79086	15	2.6	15	84	8	53	61	0	25	12	1.31
90231--90280	19	2.3	20	80	19	57	68	0	20	12	1.21
90232--90301	36	2.0	33	81	13	79	67	0	20	12	1.23
90502--90545	12	3.8	11	80	19	54	0	13	2	84	0.73
93114--93156	11	3.7	12	85	11	54	81	0	18	0	0.69
93117--93158	6	6.8	6	86	13	59	80	0	19	0	0.70
94531--94597	19	3.6	18	75	18	66	74	5	13	5	1.19
98532--98581	22	2.3	22	85	0	73	62	14	12	12	1.56
98532--98590	22	2.7	21	77	12	57	62	13	13	10	1.54
104029--104059	2	15.5	2	100	0	62	51	0	0	48	1.00
107410--107461	27	2.0	27	92	3	88	3	13	3	78	1.02
111002--111044	21	2.0	23	81	9	54	44	27	18	9	1.80
111487--111527	12	3.3	12	83	16	57	65	0	9	24	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112597--112625	15	2.0	15	93	6	51	0	13	3	82	0.79
114673--115211	274	2.0	273	92	1	900	41	10	17	30	1.83
115835--115877	23	1.9	21	81	13	50	37	11	18	32	1.87
118253--118321	33	2.1	33	83	5	86	31	1	36	30	1.67
123912--123980	33	2.1	33	86	5	95	33	1	34	30	1.67
123936--124004	35	2.0	33	83	10	86	30	2	34	31	1.73
128501--128588	35	2.5	36	79	1	106	30	35	3	30	1.74
130448--130483	18	2.0	18	89	10	56	77	5	16	0	0.94
131646--131730	11	7.2	12	73	21	65	28	3	37	30	1.74
131631--131731	36	2.9	35	92	2	166	25	4	36	32	1.78
136009--136077	34	2.1	33	83	8	86	33	1	36	28	1.67
145029--145058	5	6.2	5	96	3	53	0	20	0	80	0.72
152361--152389	13	2.3	13	94	5	51	51	10	27	10	1.68
161370--161402	18	1.9	17	88	11	50	75	3	12	9	1.14
169784--169993	65	3.2	64	80	8	221	25	18	25	31	1.97
171036--171079	21	2.1	21	83	8	54	36	15	38	9	1.80
172610--172705	23	4.5	22	76	13	94	25	20	25	29	1.99
172611--172705	44	2.2	42	85	7	120	25	20	25	29	1.99
174983--175008	9	2.9	9	100	0	52	34	23	7	34	1.83
177608--177767	65	2.5	65	80	5	164	28	17	22	31	1.97
186806--186908	34	3.0	34	83	9	104	31	35	1	31	1.69
191267--191369	34	3.0	34	83	9	104	31	35	1	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194633--194683	19	2.6	20	84	3	68	47	5	11	35	1.65
197579--197625	16	2.8	16	81	12	51	68	0	17	14	1.22
203770--203920	69	2.2	69	80	5	171	37	17	21	23	1.94
206966--207006	13	3.2	12	83	10	55	65	0	12	21	1.25
208862--208949	24	3.4	24	68	17	77	32	29	11	26	1.91
208843--208945	54	1.9	54	97	0	197	33	27	11	28	1.91
209705--209744	19	2.0	20	90	4	64	20	15	0	65	1.28
209901--209967	32	2.1	33	81	13	77	59	0	25	14	1.36
210465--210507	19	2.2	20	87	4	61	48	6	9	34	1.62
213463--213513	24	2.2	24	92	3	86	64	13	13	7	1.48
228683--228725	23	1.9	21	81	13	50	34	13	18	32	1.90
231213--231252	20	1.9	22	85	10	57	45	12	25	17	1.83
232468--232499	15	2.2	14	94	5	55	78	3	18	0	0.89
233711--233753	23	1.9	21	81	13	50	32	18	13	34	1.90
236503--236534	15	2.2	14	94	5	55	78	3	18	0	0.89
237747--237789	23	1.9	21	81	13	50	32	18	13	34	1.90
243044--243073	13	2.4	13	94	5	53	43	0	30	26	1.55
245902--245970	34	2.0	34	83	5	86	33	1	34	30	1.67
250364--250466	34	3.0	34	80	9	95	31	1	35	31	1.69
250386--250466	34	2.3	35	83	12	105	29	2	37	30	1.71
253769--253826	28	2.2	26	81	12	64	8	20	3	67	1.33
254635--254675	19	2.1	19	86	4	55	51	7	7	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260331--260380	25	2.1	22	82	10	55	62	12	18	8	1.53
264684--265681	515	1.9	512	86	6	1412	37	11	24	26	1.89

Tables:   1

The End!