genome.fa.s8334.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008334.1 Hibiscus syriacus cultivar Beakdansim tig00111047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195962

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2593--2630	14	2.6	16	80	20	55	68	5	5	21	1.29
14160--14190	16	1.9	16	93	0	53	35	19	6	38	1.77
17849--17881	16	2.1	16	94	0	57	36	6	15	42	1.71
19005--19038	2	17.0	2	100	0	68	50	0	0	50	1.00
24785--25005	64	3.5	64	82	4	234	33	20	18	27	1.96
25307--25342	12	3.0	12	91	0	63	33	5	25	36	1.79
25307--25375	24	2.8	26	83	12	85	37	5	24	31	1.79
31685--31905	64	3.5	64	81	4	225	33	19	18	27	1.96
32214--32249	12	3.0	12	91	0	63	33	5	25	36	1.79
32214--32282	24	2.8	26	83	12	85	37	5	24	31	1.79
34732--34801	30	2.3	30	97	0	131	55	2	14	27	1.53
38761--38817	26	2.2	27	78	9	64	21	3	12	63	1.43
40542--40586	20	2.2	20	84	0	54	51	2	2	44	1.26
43660--43705	22	2.1	22	95	0	83	23	32	23	19	1.97
43697--43722	11	2.4	11	100	0	52	23	30	19	26	1.98
44219--44282	21	3.0	21	81	4	83	28	21	25	25	1.99
50581--50626	22	2.1	22	91	0	74	23	34	23	17	1.96
50618--50643	11	2.4	11	100	0	52	23	30	19	26	1.98
51140--51203	21	3.0	21	86	4	92	26	21	26	25	2.00
52772--53581	407	2.0	406	92	0	1341	35	15	16	32	1.90
54036--54070	2	17.5	2	100	0	70	48	0	0	51	1.00
55188--55221	6	5.7	6	96	0	50	0	23	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56641--56725	3	28.3	3	100	0	170	32	0	67	0	0.91
76688--76726	20	1.9	20	89	5	60	28	38	20	12	1.89
76688--76745	21	2.8	20	79	7	62	27	36	22	13	1.92
77426--77465	21	1.9	21	89	0	62	37	40	0	22	1.54
85413--85454	13	3.2	13	82	0	57	28	21	23	26	1.99
86572--86630	29	2.0	29	96	0	109	49	15	13	22	1.79
94683--94725	20	2.2	20	83	8	52	34	23	13	27	1.93
98192--98253	20	2.9	21	80	9	63	16	25	35	22	1.94
101986--102025	21	1.9	21	85	10	55	35	10	2	52	1.48
107219--107277	29	2.0	29	96	0	109	49	15	13	22	1.79
122390--122545	31	5.0	31	89	1	224	35	21	21	21	1.96
123019--123059	18	2.4	18	88	8	59	41	17	4	36	1.71
123413--123457	21	2.1	21	87	0	63	15	24	28	31	1.96
126496--126651	31	5.0	31	90	3	226	35	21	21	21	1.96
127126--127166	18	2.4	18	88	8	59	41	17	4	36	1.71
127518--127562	21	2.1	21	87	0	63	15	24	28	31	1.96
133109--133135	4	6.8	4	100	0	54	74	0	0	25	0.83
133193--133225	14	2.4	14	94	0	57	30	30	6	33	1.82
138038--138089	2	26.0	2	96	0	95	51	0	48	0	1.00
138559--138617	23	2.6	23	71	10	59	13	15	16	54	1.72
139743--139768	2	13.0	2	100	0	52	50	0	0	50	1.00
146040--146152	21	5.6	21	71	18	80	78	3	16	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146062--146144	8	9.9	8	79	16	80	80	1	16	1	0.84
146068--146152	7	11.6	7	78	14	75	81	1	17	0	0.76
146019--146147	42	3.0	41	76	18	111	75	3	17	3	1.06
146061--146152	26	3.7	25	75	17	84	79	1	18	1	0.86
146079--146152	38	1.9	39	89	8	116	79	1	18	0	0.80
146056--146152	20	4.8	20	75	19	94	79	1	18	1	0.85
146804--146875	28	2.6	29	77	6	76	33	37	6	22	1.81
153736--153797	23	2.7	23	87	2	81	20	33	24	20	1.97
156407--156454	19	2.5	19	100	0	96	14	41	22	20	1.89
157651--157952	55	5.6	53	81	5	284	32	11	15	40	1.84
157651--157953	54	5.6	54	81	4	290	32	11	15	40	1.84
157651--157955	107	2.8	108	81	4	294	32	11	15	40	1.84
157980--158517	274	2.0	274	85	2	742	28	15	19	36	1.92
159043--159575	139	3.8	139	89	1	775	34	16	21	27	1.95
159043--159575	277	1.9	279	88	2	804	34	16	21	27	1.95
160901--160987	29	3.1	28	88	5	95	19	9	8	63	1.49
160918--160987	29	2.5	28	95	4	124	18	11	10	60	1.58
165128--165163	9	3.9	9	89	7	54	2	19	19	58	1.52
165131--165163	10	3.4	10	87	8	50	3	18	15	63	1.43
168792--168825	16	2.1	16	88	0	50	35	0	20	44	1.52
172456--172557	21	4.8	21	85	4	125	23	37	17	21	1.94
172596--172688	20	4.7	20	90	0	132	21	29	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181128--181158	14	2.2	14	94	0	53	77	0	9	12	0.99
181898--181950	24	2.2	24	87	9	74	67	3	3	24	1.23
182189--182233	20	2.2	20	96	0	81	33	13	44	8	1.75
182856--183275	170	2.5	170	97	0	786	24	17	24	33	1.96
182983--183098	44	2.6	44	84	10	130	25	16	23	35	1.95
190813--190892	39	2.1	39	90	4	126	22	21	26	30	1.99
195342--195388	23	2.0	24	87	4	69	68	4	2	25	1.19
195621--195665	20	2.2	20	96	0	81	33	13	44	8	1.75

Tables:   1

The End!