genome.fa.s8335.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008335.1 Hibiscus syriacus cultivar Beakdansim tig00111052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54517

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96--147	20	2.6	20	96	0	95	38	26	13	21	1.90
220--390	20	8.7	19	74	8	112	34	25	19	19	1.96
220--389	59	2.9	58	81	8	209	34	25	20	20	1.96
242--385	79	1.8	77	86	5	209	32	25	20	22	1.98
762--830	33	2.2	33	89	5	106	8	23	18	49	1.75
908--963	20	2.8	20	81	8	69	42	17	26	12	1.85
950--1004	14	3.6	14	73	21	56	40	23	27	9	1.85
950--1020	33	2.2	33	92	0	115	42	25	23	8	1.82
1016--1113	19	5.7	19	70	22	81	10	24	22	42	1.84
1038--1127	14	5.7	14	74	23	81	8	25	23	42	1.83
1021--1135	33	3.5	33	95	0	212	9	24	20	45	1.81
2806--3268	91	5.1	93	93	5	779	21	12	19	45	1.84
2806--3268	183	2.5	185	94	4	832	21	12	19	45	1.84
3314--3447	19	7.6	19	75	16	117	45	26	18	8	1.79
3349--3442	33	2.9	32	88	4	152	46	25	19	8	1.77
3314--3447	52	2.6	51	74	16	141	45	26	18	8	1.79
3443--3570	19	7.3	19	72	19	98	10	17	23	47	1.79
3443--3533	33	2.8	33	89	1	139	10	19	20	48	1.79
5452--5487	14	2.6	14	95	0	63	33	0	22	44	1.53
5593--5692	19	5.6	19	81	14	124	44	17	23	16	1.87
5699--5992	18	17.1	18	78	16	297	14	21	18	46	1.84
5689--6020	140	2.4	135	88	7	478	14	20	18	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5721--5992	51	5.2	52	88	8	330	14	20	18	46	1.83
8485--8531	24	2.0	24	87	8	69	38	21	14	25	1.92
9199--9564	20	18.5	20	84	6	431	20	19	26	34	1.96
9199--9545	79	4.4	80	87	4	438	20	19	26	33	1.96
9873--9913	18	2.1	21	82	13	52	9	0	26	63	1.25
11579--11604	2	13.0	2	100	0	52	50	0	0	50	1.00
14945--15142	73	2.7	74	82	11	232	43	3	6	45	1.47
15121--15209	32	2.8	32	91	1	133	46	3	6	43	1.46
15137--15265	40	3.5	38	74	22	121	45	2	5	46	1.38
15266--15311	19	2.4	19	79	13	51	21	8	2	67	1.29
18046--18075	15	2.0	15	93	0	51	6	40	3	50	1.45
29668--29730	26	2.4	26	97	0	117	31	19	11	38	1.86
41251--41291	19	2.2	19	86	8	57	24	19	0	56	1.42
42400--42436	15	2.5	15	95	0	65	8	70	16	5	1.30
47375--47422	21	2.2	22	92	3	80	39	8	0	52	1.32
49498--49537	21	1.9	21	89	0	62	32	30	20	17	1.95

Tables:   1

The End!