Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008336.1 Hibiscus syriacus cultivar Beakdansim tig00111053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 846240
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 1 of 4
Found at i:2463 original size:20 final size:20
Alignment explanation
Indices: 2438--2486 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
2428 AGAATAGTTT
*
2438 ACTATCGCAATGCGAAAATG
1 ACTATCGCAACGCGAAAATG
2458 ACTATCGCAACGCGAAAATG
1 ACTATCGCAACGCGAAAATG
2478 ACTATCGCA
1 ACTATCGCA
2487 CGAGAGAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.18
Consensus pattern (20 bp):
ACTATCGCAACGCGAAAATG
Found at i:2649 original size:20 final size:20
Alignment explanation
Indices: 2597--2654 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
2587 GATTCTCTCG
**
2597 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
2617 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
2637 TTGCGATAGTCATTTTCG
1 TTGCGATAGTCATTTTCG
2655 TGTTGTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:3183 original size:18 final size:19
Alignment explanation
Indices: 3144--3185 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
3134 CTCACCTGTC
3144 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-C-CCCCT
3165 ATCGTTCAAGAGG-CCCCT
1 ATCGTTCAAGAGGCCCCCT
3183 ATC
1 ATC
3186 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
21 13 0.62
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (19 bp):
ATCGTTCAAGAGGCCCCCT
Found at i:4618 original size:14 final size:14
Alignment explanation
Indices: 4599--4634 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
4589 ATTGTTTAAT
4599 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
4613 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
4627 TGATTTGT
1 TGATTTGT
4635 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:4793 original size:33 final size:33
Alignment explanation
Indices: 4747--4830 Score: 116
Period size: 33 Copynumber: 2.5 Consensus size: 33
4737 TCACAACGCA
** *
4747 GAAATGACTATCGCAACGAGAGAATCGTAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
*
4780 GAAATGAAAATCGCAACGAGTGAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGC
4813 GAAAAT-AAAATCGCAACG
1 G-AAATGAAAATCGCAACG
4831 CGAAACTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
33 42 0.91
34 4 0.09
ACGTcount: A:0.44, C:0.18, G:0.23, T:0.15
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:4927 original size:31 final size:27
Alignment explanation
Indices: 4862--4927 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
4852 ATTTCATTTC
*
4862 GATTTGTTTAATTGATGTGTAATATTT
1 GATTTGTTTAATTGATGTGTAATAGTT
4889 G-TCTTGTTTAATTGATTGAAATGTAATAGTT
1 GAT-TTGTTTAATTGA-TG---TGTAATAGTT
4920 GATTTGTT
1 GATTTGTT
4928 GATTTCAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
26 1 0.03
27 13 0.41
28 2 0.06
31 15 0.47
32 1 0.03
ACGTcount: A:0.26, C:0.02, G:0.20, T:0.53
Consensus pattern (27 bp):
GATTTGTTTAATTGATGTGTAATAGTT
Found at i:5058 original size:34 final size:34
Alignment explanation
Indices: 4965--5060 Score: 122
Period size: 33 Copynumber: 2.9 Consensus size: 34
4955 AAAACAGAAT
* ** *
4965 ATCGCAACGCGAAAATGACTATCACAACGAGAGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
* * *
4999 TTCGCAATGCG-AAATTAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
5032 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCGAAAATGAAAATCGCAACG
5061 CGAAACTAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
33 27 0.52
34 25 0.48
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.16
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGAAAATCGCAACGAGAGA
Found at i:5144 original size:33 final size:33
Alignment explanation
Indices: 5075--5159 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 33
5065 ACTAATTTCG
* *
5075 CGTTGTGATTTTCATTTTCGCATTGCAATTCACT
1 CGTTGCGATTTTCA-TTTCGCATTACAATTCACT
* *
5109 CGTTGCGATTTTCATTTCGCATTACGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTACAATTCACT
**
5142 CGTTGCGATAGTCATTTC
1 CGTTGCGATTTTCATTTC
5160 CGCGCTGCGA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
33 32 0.71
34 13 0.29
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTACAATTCACT
Found at i:5170 original size:20 final size:20
Alignment explanation
Indices: 5142--5255 Score: 140
Period size: 20 Copynumber: 5.7 Consensus size: 20
5132 ACGATTCTCT
5142 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* *
5162 CGCTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
* *
5182 CATTGCGATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
* *
5202 CATTGCGATAGTTATTTCCG
1 CGTTGCGATAGTCATTTCCG
* *
5222 TGTTGGGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
5242 CGTTGCGATAGTCA
1 CGTTGCGATAGTCA
5256 AATGAATGTC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
20 79 0.98
21 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:5248 original size:60 final size:60
Alignment explanation
Indices: 5144--5256 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 60
5134 GATTCTCTCG
5144 TTGCGATAGTCATTTCCGCGCTGCGATAGTCAATTCCGCATTGCGATAGTCAATTCCGCA
1 TTGCGATAGTCATTTCCGCGCTGCGATAGTCAATTCCGCATTGCGATAGTCAATTCCGCA
* * * * *
5204 TTGCGATAGTTATTTCCGTGTTGGGATAGTCATATT-CGCGTTGCGATAGTCAA
1 TTGCGATAGTCATTTCCGCGCTGCGATAGTCA-ATTCCGCATTGCGATAGTCAA
5257 ATGAATGTCT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
60 44 0.94
61 3 0.06
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.34
Consensus pattern (60 bp):
TTGCGATAGTCATTTCCGCGCTGCGATAGTCAATTCCGCATTGCGATAGTCAATTCCGCA
Found at i:7727 original size:24 final size:24
Alignment explanation
Indices: 7676--7727 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7666 ATCCAAGTAT
** *
7676 TGACCAAGATCAAAGTCCGGGTAT
1 TGACCAAGATCAAAGTCCGAATAC
* *
7700 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTCCGAATAC
7724 TGAC
1 TGAC
7728 TATTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTCCGAATAC
Found at i:8620 original size:21 final size:20
Alignment explanation
Indices: 8596--8643 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
8586 GTAATCGCAT
8596 TGCGATTTAGGAAAATCGT-AA
1 TGCGATTT-GGAAAATC-TCAA
*
8617 TGCGAATTTGGGAAATCTCAA
1 TGCG-ATTTGGAAAATCTCAA
8638 TGCGAT
1 TGCGAT
8644 AGTCAGAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 3 0.12
21 17 0.71
22 4 0.17
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (20 bp):
TGCGATTTGGAAAATCTCAA
Found at i:9003 original size:60 final size:60
Alignment explanation
Indices: 8931--9045 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 60
8921 ATGATCCCCG
* * *
8931 ACTATAGGGTATTACT-TTATTAAGTCTC-TTGATTATTAAAAGTTACAAAATGATCCTTCA
1 ACTATAGAGTATT-CTGTTACTAAGTC-CATTGACTATTAAAAGTTACAAAATGATCCTTCA
* * *
8991 ACTATAGAGTATTTTGTTGCTGAGTCCATTGACTATTAAAAGTTACAAAATGATC
1 ACTATAGAGTATTCTGTTACTAAGTCCATTGACTATTAAAAGTTACAAAATGATC
9046 ACCCGACTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
59 2 0.04
60 45 0.96
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (60 bp):
ACTATAGAGTATTCTGTTACTAAGTCCATTGACTATTAAAAGTTACAAAATGATCCTTCA
Found at i:22042 original size:2 final size:2
Alignment explanation
Indices: 22035--22066 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22025 GCATAATCTG
22035 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22067 CACATTAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:29622 original size:21 final size:21
Alignment explanation
Indices: 29596--29652 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
29586 ATTTACCGTG
*
29596 ATTGCGGCCGTCGCGGGCGCT
1 ATTGCGGCCGTCGCGGACGCT
*
29617 ATTGCGGTCGTCGCGGACGCT
1 ATTGCGGCCGTCGCGGACGCT
29638 ATTGCGGCCGTCGCG
1 ATTGCGGCCGTCGCG
29653 TGTAACTCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.07, C:0.32, G:0.40, T:0.21
Consensus pattern (21 bp):
ATTGCGGCCGTCGCGGACGCT
Found at i:36914 original size:2 final size:2
Alignment explanation
Indices: 36907--36931 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36897 AATCTATTCA
36907 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
36932 AATCAAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47790 original size:22 final size:22
Alignment explanation
Indices: 47764--47818 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
47754 ATTTGATCTA
47764 AAAAAATA-ACTGATAATTAATT
1 AAAAAATAGA-TGATAATTAATT
47786 AAAAAATAGATGATAATTAATT
1 AAAAAATAGATGATAATTAATT
47808 AAAAAATAGAT
1 AAAAAATAGAT
47819 AATTGAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (22 bp):
AAAAAATAGATGATAATTAATT
Found at i:48983 original size:42 final size:43
Alignment explanation
Indices: 48913--49007 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
48903 TTTAATATTT
* * *
48913 TAATAATATTATTATTTTAATAAGTAATTAACATAATTAATAA
1 TAATATTATTCTTGTTTTAATAAGTAATTAACATAATTAATAA
* *
48956 -AATATTATTCTTGTTTTAATACA-TAATTAATATAATTTATAA
1 TAATATTATTCTTGTTTTAATA-AGTAATTAACATAATTAATAA
*
48998 TAATTTTATT
1 TAATATTATT
49008 TTAATAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
42 35 0.80
43 9 0.20
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.49
Consensus pattern (43 bp):
TAATATTATTCTTGTTTTAATAAGTAATTAACATAATTAATAA
Found at i:49012 original size:21 final size:22
Alignment explanation
Indices: 48988--49049 Score: 56
Period size: 24 Copynumber: 2.7 Consensus size: 22
48978 ATAATTAATA
48988 TAATTTATAATAATTT-TATTT
1 TAATTTATAATAATTTATATTT
49009 TAATAAATTATAATAATCTTAATATTT
1 TAAT---TTATAATAAT-TT-ATATTT
*
49036 TTATTTATAA-AATT
1 TAATTTATAATAATT
49050 ATAGATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
21 4 0.12
22 1 0.03
23 3 0.09
24 16 0.47
25 2 0.06
27 8 0.24
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATTTATAATAATTTATATTT
Found at i:49038 original size:33 final size:33
Alignment explanation
Indices: 48995--49058 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
48985 ATATAATTTA
48995 TAATAATTTTATTT-TAATAAATTATA-ATAATCT
1 TAATAATTTTATTTAT-A-AAATTATAGATAATCT
*
49028 TAATATTTTTATTTATAAAATTATAGATAAT
1 TAATAATTTTATTTATAAAATTATAGATAAT
49059 ATTTTAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 8 0.29
33 19 0.68
34 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (33 bp):
TAATAATTTTATTTATAAAATTATAGATAATCT
Found at i:50202 original size:18 final size:18
Alignment explanation
Indices: 50179--50221 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
50169 CAACTGCGGT
*
50179 TGAACCCGGTTGAACCAG
1 TGAACCAGGTTGAACCAG
50197 TGAACCAGGTTGAACCAG
1 TGAACCAGGTTGAACCAG
50215 TGAACCA
1 TGAACCA
50222 ATACCTTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.26, G:0.26, T:0.16
Consensus pattern (18 bp):
TGAACCAGGTTGAACCAG
Found at i:50213 original size:10 final size:10
Alignment explanation
Indices: 50176--50214 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
50166 GTTCAACTGC
*
50176 GGTTGAACCC
1 GGTTGAACCA
50186 GGTTGAACCA
1 GGTTGAACCA
50196 -G-TGAACCA
1 GGTTGAACCA
50204 GGTTGAACCA
1 GGTTGAACCA
50214 G
1 G
50215 TGAACCAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
8 7 0.27
9 2 0.08
10 17 0.65
ACGTcount: A:0.28, C:0.23, G:0.31, T:0.18
Consensus pattern (10 bp):
GGTTGAACCA
Found at i:55890 original size:10 final size:10
Alignment explanation
Indices: 55870--55924 Score: 78
Period size: 10 Copynumber: 5.6 Consensus size: 10
55860 ACGGGTCGTG
55870 ACCGGTC-AA
1 ACCGGTCAAA
55879 ACCGGTCAAA
1 ACCGGTCAAA
55889 ACCGGTTCAAA
1 ACCGG-TCAAA
*
55900 ACCGGT-TAA
1 ACCGGTCAAA
55909 ACCGGTCAAA
1 ACCGGTCAAA
55919 ACCGGT
1 ACCGGT
55925 TTCCAGCGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
9 15 0.37
10 16 0.39
11 10 0.24
ACGTcount: A:0.35, C:0.29, G:0.22, T:0.15
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:55925 original size:19 final size:19
Alignment explanation
Indices: 55870--55925 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
55860 ACGGGTCGTG
*
55870 ACCGGTC-AAACCGGTCAAA
1 ACCGGTCAAAACCGGT-TAA
55889 ACCGGTTCAAAACCGGTTAA
1 ACCGG-TCAAAACCGGTTAA
55909 ACCGGTCAAAACCGGTT
1 ACCGGTCAAAACCGGTT
55926 TCCAGCGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 17 0.50
20 9 0.26
21 8 0.24
ACGTcount: A:0.34, C:0.29, G:0.21, T:0.16
Consensus pattern (19 bp):
ACCGGTCAAAACCGGTTAA
Found at i:63082 original size:13 final size:13
Alignment explanation
Indices: 63050--63096 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
63040 CACCGTCAAC
*
63050 GGTCAAAGGGTCG
1 GGTCAACGGGTCG
63063 GGT---CGGGTCG
1 GGTCAACGGGTCG
63073 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
63086 GGTAAACGGGT
1 GGTCAACGGGT
63097 AAACGGGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 9 0.31
13 20 0.69
ACGTcount: A:0.17, C:0.17, G:0.49, T:0.17
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:63084 original size:8 final size:8
Alignment explanation
Indices: 63084--63112 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
63074 GTCAACGGGT
63084 CGGGTAAA
1 CGGGTAAA
63092 CGGGTAAA
1 CGGGTAAA
63100 CGGGTAAA
1 CGGGTAAA
63108 CGGGT
1 CGGGT
63113 CGTGACCGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.31, C:0.14, G:0.41, T:0.14
Consensus pattern (8 bp):
CGGGTAAA
Found at i:63137 original size:10 final size:10
Alignment explanation
Indices: 63117--63171 Score: 78
Period size: 10 Copynumber: 5.6 Consensus size: 10
63107 ACGGGTCGTG
63117 ACCGGTC-AA
1 ACCGGTCAAA
63126 ACCGGTCAAA
1 ACCGGTCAAA
63136 ACCGGTTCAAA
1 ACCGG-TCAAA
*
63147 ACCGGT-TAA
1 ACCGGTCAAA
63156 ACCGGTCAAA
1 ACCGGTCAAA
63166 ACCGGT
1 ACCGGT
63172 TTCCAGCGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
9 15 0.37
10 16 0.39
11 10 0.24
ACGTcount: A:0.35, C:0.29, G:0.22, T:0.15
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:63172 original size:19 final size:19
Alignment explanation
Indices: 63117--63172 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
63107 ACGGGTCGTG
*
63117 ACCGGTC-AAACCGGTCAAA
1 ACCGGTCAAAACCGGT-TAA
63136 ACCGGTTCAAAACCGGTTAA
1 ACCGG-TCAAAACCGGTTAA
63156 ACCGGTCAAAACCGGTT
1 ACCGGTCAAAACCGGTT
63173 TCCAGCGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 17 0.50
20 9 0.26
21 8 0.24
ACGTcount: A:0.34, C:0.29, G:0.21, T:0.16
Consensus pattern (19 bp):
ACCGGTCAAAACCGGTTAA
Found at i:65013 original size:26 final size:25
Alignment explanation
Indices: 64953--65013 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
64943 AGATAAAAAT
**
64953 ATAAAGAAAATAAGAAATGAATACA
1 ATAAAGAAAATAAGAAAAAAATACA
* *
64978 A-ACAAAAAAATGAGGAAAAAAATACA
1 ATA-AAGAAAAT-AAGAAAAAAATACA
65004 ATAAAGAAAA
1 ATAAAGAAAA
65014 CAAGTTATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
24 1 0.04
25 8 0.29
26 18 0.64
27 1 0.04
ACGTcount: A:0.72, C:0.05, G:0.11, T:0.11
Consensus pattern (25 bp):
ATAAAGAAAATAAGAAAAAAATACA
Found at i:65291 original size:2 final size:2
Alignment explanation
Indices: 65284--65317 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
65274 TATAAGTGAA
65284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65318 ATCAGCTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:67426 original size:201 final size:204
Alignment explanation
Indices: 67150--67642 Score: 678
Period size: 201 Copynumber: 2.4 Consensus size: 204
67140 ATTGCTCCGA
* * * * * *
67150 GTCCAATATCCTTCGCCGTGAAATTGAAATTGGTTATGGAACTGAGGAA-TTGTTTGTTGAAAGT
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAATTG-GGAAGTTGTTTGTTGACAGT
* *
67214 CA-ACCGCCCCTTCGCTGTGAAGTTCAGCTTGTGCTGTCTTGAGTCTAATATCATTCGTCGTGAA
65 CAGA-CGCCCCTTCGCTGTGAAGTTCAGCTTGTGCTGTCTTGAGTCCAATATCATTCATCGTGAA
*
67278 GTTGAAATTGACTCTG-AA-T-AAATTTGACAATCAGTCTC-CCCTTT-G-TCGTGAAGTTGAGC
129 GTTGAAATTGACTCTGAAACTGAAAGTTGACAATCAG-C-CGCCCTTTCGCT-GTGAAGTTGAGC
*
67337 TTGTGTTGTCTTGG
191 TTGTGCTGTCTTGG
* *
67351 GTCCAATATCCTTTGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTC
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAATTGGGAAGTTGTTTGTTGACAGTC
* * * * *
67416 AGTCGCCCCTTCGTTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTCATTGTGAAGT
66 AGACGCCCCTTCGCTGTGAAGTTCAGCTTGTGCTGTCTTGAGTCCAATATCATTCATCGTGAAGT
* * *
67481 TGAAATTGGCTCTGAAACTGGAAGTTGACAGTCAGCCGCCCTTTCGCTGTGAAGTTGAGCTTGTG
131 TGAAATTGACTCTGAAACTGAAAGTTGACAATCAGCCGCCCTTTCGCTGTGAAGTTGAGCTTGTG
67546 CTGTCTTGG
196 CTGTCTTGG
* * *
67555 GTCCAATATCCTTCGCTATGAAGTTAAAATTGGCTCTGGAATTAGGAAGTTGTTTGTTGACAGTC
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAATTGGGAAGTTGTTTGTTGACAGTC
67620 AGACGCCCCTTCGCTGTGAAGTT
66 AGACGCCCCTTCGCTGTGAAGTT
67643 GAAACCGTGG
Statistics
Matches: 257, Mismatches: 27, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
200 4 0.02
201 122 0.47
202 3 0.01
203 8 0.03
204 119 0.46
205 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.35
Consensus pattern (204 bp):
GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAATTGGGAAGTTGTTTGTTGACAGTC
AGACGCCCCTTCGCTGTGAAGTTCAGCTTGTGCTGTCTTGAGTCCAATATCATTCATCGTGAAGT
TGAAATTGACTCTGAAACTGAAAGTTGACAATCAGCCGCCCTTTCGCTGTGAAGTTGAGCTTGTG
CTGTCTTGG
Found at i:67486 original size:106 final size:105
Alignment explanation
Indices: 67301--67644 Score: 461
Period size: 106 Copynumber: 3.3 Consensus size: 105
67291 CTGAATAAAT
* * * * *
67301 TTGACAATCAGTCTCCCCTTTG-TCGTGAAGTTGAGCTTGTGTTGTCTTGGGTCCAATATCCTTT
1 TTGACAGTCAGTCGCCCCTTCGCT-GTGAAGTTGAGCTTGTGCTGTCTTGGGTCCAATATCCTTC
67365 GCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTG
65 GCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTG
* * *
67407 TTGACAGTCAGTCGCCCCTTCGTTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTCA
1 TTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCCAATATCCTTCG
* *
67472 TTGTGAAGTTGAAATTGGCTCTGAAACTGGAA-------G
66 CTGTGAAGTTGAAATTGGCTCTGAAATTGGAAGTTGTTTG
* *
67505 TTGACAGTCAGCCGCCCTTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCCAATATCCTTCG
1 TTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCCAATATCCTTCG
* * *
67570 CTATGAAGTTAAAATTGGCTCTGGAATTAGGAAGTTGTTTG
66 CTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAGTTGTTTG
*
67611 TTGACAGTCAGACGCCCCTTCGCTGTGAAGTTGA
1 TTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGA
67645 AACCGTGGAT
Statistics
Matches: 208, Mismatches: 21, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
98 84 0.40
99 4 0.02
105 4 0.02
106 115 0.55
107 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (105 bp):
TTGACAGTCAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCCAATATCCTTCG
CTGTGAAGTTGAAATTGGCTCTGAAATTGGAAGTTGTTTG
Found at i:67552 original size:98 final size:99
Alignment explanation
Indices: 67205--67644 Score: 390
Period size: 106 Copynumber: 4.4 Consensus size: 99
67195 GGAATTGTTT
* * * * *
67205 GTTGAAAGTCAACCGCCCCTTCGCTGTGAAGTTCAGCTTGTGCTGTCTTGAGTCTAATATCATTC
1 GTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTC
* * * *
67270 -GTCGTGAAGTTGAAATTGACTCTG-AA-TA--AA
66 ACT-ATGAAGTTAAAATTGGCTCTGAAACTAGGAA
* * * * * * *
67300 TTTGACAATCAGTCTCCCCTTTG-TCGTGAAGTTGAGCTTGTGTTGTCTTGGGTCCAATATCCTT
1 GTTGACAGTCAGCCGCCCCTTCGCT-GTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTT
** * * * *
67364 TGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA
65 CACTATGAAGTTAAAATTGGCTCTGAAACTAGGAA
* *
67399 GTTGTTTGTTGACAGTCAGTCGCCCCTTCGTTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAAT
1 -------GTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAAT
* * *
67464 ATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAACT-GGAA
59 ATCCTTCACTATGAAGTTAAAATTGGCTCTGAAACTAGGAA
* *
67504 GTTGACAGTCAGCCGCCCTTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCCAATATCCTTC
1 GTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTC
* * *
67569 GCTATGAAGTTAAAATTGGCTCTGGAATTAGGAA
66 ACTATGAAGTTAAAATTGGCTCTGAAACTAGGAA
*
67603 GTTGTTTGTTGACAGTCAGACGCCCCTTCGCTGTGAAGTTGA
1 -------GTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGA
67645 AACCGTGGAT
Statistics
Matches: 285, Mismatches: 38, Indels: 33
0.80 0.11 0.09
Matches are distributed among these distances:
94 1 0.00
95 70 0.25
96 3 0.01
97 1 0.00
98 84 0.29
99 6 0.02
105 4 0.01
106 115 0.40
107 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (99 bp):
GTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTC
ACTATGAAGTTAAAATTGGCTCTGAAACTAGGAA
Found at i:67611 original size:204 final size:201
Alignment explanation
Indices: 67150--67644 Score: 676
Period size: 204 Copynumber: 2.4 Consensus size: 201
67140 ATTGCTCCGA
* * * * * *
67150 GTCCAATATCCTTCGCCGTGAAATTGAAATTGGTTATGGAACTGAGGAA-TTGTTTGTTGAAAGT
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAA-TTAGGAAGTTGTTTGTTGACAGT
* * *
67214 CA-ACCGCCCCTTCGCTGTGAAGTTCAGCTTGTGCTGTCTTGAGTCTAATATCATTCGTCGTGAA
65 CAGA-CGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCATTCATCGTGAA
* *
67278 GTTGAAATTGACTCTGAATAAATTTGACAATCAGTCTCCCCTTTGTCGTGAAGTTGAGCTTGTGT
129 GTTGAAATTGACTCTGAATAAAGTTGACAATCAGTCTCCCCTTTGTCGTGAAGTTGAGCTTGTGC
67343 TGTCTTGG
194 TGTCTTGG
* * *
67351 GTCCAATATCCTTTGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAGTC
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAATTAGGAAGTTGTTTGTTGACAGTC
* * * *
67416 AGTCGCCCCTTCGTTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCCTTCATTGTGAAGT
66 AGACGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCATTCATCGTGAAGT
* * *
67481 TGAAATTGGCTCTGAAACTGGAAGTTGACAGTCAG-C-CGCCCTTTCG-CTGTGAAGTTGAGCTT
131 TGAAATTGACTCTG-AA-T-AAAGTTGACAATCAGTCTC-CCCTTT-GTC-GTGAAGTTGAGCTT
67543 GTGCTGTCTTGG
190 GTGCTGTCTTGG
* *
67555 GTCCAATATCCTTCGCTATGAAGTTAAAATTGGCTCTGGAATTAGGAAGTTGTTTGTTGACAGTC
1 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAATTAGGAAGTTGTTTGTTGACAGTC
67620 AGACGCCCCTTCGCTGTGAAGTTGA
66 AGACGCCCCTTCGCTGTGAAGTTGA
67645 AACCGTGGAT
Statistics
Matches: 258, Mismatches: 28, Indels: 13
0.86 0.09 0.04
Matches are distributed among these distances:
200 5 0.02
201 120 0.47
202 3 0.01
203 9 0.03
204 121 0.47
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.35
Consensus pattern (201 bp):
GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGGAATTAGGAAGTTGTTTGTTGACAGTC
AGACGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTCCAATATCATTCATCGTGAAGT
TGAAATTGACTCTGAATAAAGTTGACAATCAGTCTCCCCTTTGTCGTGAAGTTGAGCTTGTGCTG
TCTTGG
Found at i:70253 original size:52 final size:52
Alignment explanation
Indices: 70175--70319 Score: 263
Period size: 52 Copynumber: 2.8 Consensus size: 52
70165 ATAGTCTTCT
*
70175 GTACATGACATCCGAGTCAATAAAAGCGCTTTCGCCTTATATGGCGGTTAGA
1 GTACATGACATCCGAGTCAATAAAAGCGCTTTCGCCTTATATGACGGTTAGA
* *
70227 GTACATGAAATCCGAGTCAATAAAAGCACTTTCGCCTTATATGACGGTTAGA
1 GTACATGACATCCGAGTCAATAAAAGCGCTTTCGCCTTATATGACGGTTAGA
70279 GTACATGACATCCGAGTCAATAAAAGCGCTTTCGCCTTATA
1 GTACATGACATCCGAGTCAATAAAAGCGCTTTCGCCTTATA
70320 GTCTAACTGA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 88 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (52 bp):
GTACATGACATCCGAGTCAATAAAAGCGCTTTCGCCTTATATGACGGTTAGA
Found at i:70838 original size:2 final size:2
Alignment explanation
Indices: 70833--70867 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
70823 CCACAAAAAA
* *
70833 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
70868 AAATCTCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91850 original size:21 final size:24
Alignment explanation
Indices: 91811--91854 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 24
91801 TCAAAAATGT
91811 TTATGTTTTTCTTTGAAAAAAATA
1 TTATGTTTTTCTTTGAAAAAAATA
91835 TTAT-TTTTT-TTT-AAAAAAAT
1 TTATGTTTTTCTTTGAAAAAAAT
91855 TTTAAAGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.40
22 3 0.15
23 5 0.25
24 4 0.20
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (24 bp):
TTATGTTTTTCTTTGAAAAAAATA
Found at i:95145 original size:37 final size:38
Alignment explanation
Indices: 95078--95159 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 38
95068 TTATTTCTTT
* *
95078 TAATAATTATCATTTATTAATCCTTATTAAATTCTGTA
1 TAATTATTATCATTTATTAATCCTTATTAAATTATGTA
* * *
95116 TAATTATTAT-ATTTCTTAGTCCTTGTTAAATTATGTA
1 TAATTATTATCATTTATTAATCCTTATTAAATTATGTA
95153 TAATTAT
1 TAATTAT
95160 CAGATTCCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 30 0.77
38 9 0.23
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (38 bp):
TAATTATTATCATTTATTAATCCTTATTAAATTATGTA
Found at i:98951 original size:34 final size:35
Alignment explanation
Indices: 98911--98986 Score: 145
Period size: 34 Copynumber: 2.2 Consensus size: 35
98901 AGTTGGCTTC
98911 TATGGTTTTAGTCAGCTGTTA-CCTTGGCTTTTAT
1 TATGGTTTTAGTCAGCTGTTACCCTTGGCTTTTAT
98945 TATGGTTTTAGTCAGCTGTTACCCTTGGCTTTTAT
1 TATGGTTTTAGTCAGCTGTTACCCTTGGCTTTTAT
98980 TATGGTT
1 TATGGTT
98987 GTTTTGTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
34 21 0.51
35 20 0.49
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (35 bp):
TATGGTTTTAGTCAGCTGTTACCCTTGGCTTTTAT
Found at i:99623 original size:16 final size:17
Alignment explanation
Indices: 99593--99630 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
99583 ACCTTCATTA
99593 TCAATTTATTTCTTTGT
1 TCAATTTATTTCTTTGT
99610 TCAATTTA-TTCTTTGT
1 TCAATTTATTTCTTTGT
99626 TCAAT
1 TCAAT
99631 AATGATGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.21, C:0.13, G:0.05, T:0.61
Consensus pattern (17 bp):
TCAATTTATTTCTTTGT
Found at i:102672 original size:17 final size:19
Alignment explanation
Indices: 102650--102686 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
102640 CCGAATACAA
*
102650 ATATATTGATTTTTAATAT
1 ATATATCGATTTTTAATAT
*
102669 ATATATCTATTTTTAATA
1 ATATATCGATTTTTAATA
102687 AATAAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (19 bp):
ATATATCGATTTTTAATAT
Found at i:118722 original size:28 final size:28
Alignment explanation
Indices: 118685--118755 Score: 133
Period size: 28 Copynumber: 2.5 Consensus size: 28
118675 AATGTATGCC
118685 TTTTGTTCTAGTTTGTTGTCTAACGTTT
1 TTTTGTTCTAGTTTGTTGTCTAACGTTT
118713 TTTTGTTCTAGTTTGTTGTCTAACGTTT
1 TTTTGTTCTAGTTTGTTGTCTAACGTTT
*
118741 TTTCGTTCTAGTTTG
1 TTTTGTTCTAGTTTG
118756 GTACCTAATG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.10, C:0.11, G:0.18, T:0.61
Consensus pattern (28 bp):
TTTTGTTCTAGTTTGTTGTCTAACGTTT
Found at i:124166 original size:14 final size:14
Alignment explanation
Indices: 124147--124202 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
124137 CGTTCGTGAA
124147 CGTTCGATTATGTT
1 CGTTCGATTATGTT
*
124161 CGTTCGGTTATG-T
1 CGTTCGATTATGTT
*
124174 --TT-GTTTATGTT
1 CGTTCGATTATGTT
124185 CGTTCGATTATGTT
1 CGTTCGATTATGTT
124199 CGTT
1 CGTT
124203 TATGTTCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.17
11 3 0.09
13 3 0.09
14 23 0.66
ACGTcount: A:0.11, C:0.12, G:0.23, T:0.54
Consensus pattern (14 bp):
CGTTCGATTATGTT
Found at i:124181 original size:24 final size:24
Alignment explanation
Indices: 124154--124223 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
124144 GAACGTTCGA
*
124154 TTATGTTCGTTCGGTTATGTTTGT
1 TTATGTTCGTTCGATTATGTTTGT
*
124178 TTATGTTCGTTCGATTATGTTCGT
1 TTATGTTCGTTCGATTATGTTTGT
*
124202 TTATGTTCATTC-ATTTATGTTT
1 TTATGTTCGTTCGA-TTATGTTT
124224 AACTCAATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.02
24 40 0.98
ACGTcount: A:0.13, C:0.10, G:0.19, T:0.59
Consensus pattern (24 bp):
TTATGTTCGTTCGATTATGTTTGT
Found at i:124963 original size:10 final size:10
Alignment explanation
Indices: 124948--125022 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
124938 GGGTCTCCAA
124948 CGTTTATGTT
1 CGTTTATGTT
124958 CGTTTATGTT
1 CGTTTATGTT
124968 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* **
124979 ATGTTCGTGTT
1 -CGTTTATGTT
124990 CGTTTATGTT
1 CGTTTATGTT
125000 CG----TGTT
1 CGTTTATGTT
125006 CGTTTATGTT
1 CGTTTATGTT
125016 CGTTTAT
1 CGTTTAT
125023 TTATTAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.67
11 7 0.14
12 4 0.08
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.57
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:124979 original size:16 final size:16
Alignment explanation
Indices: 124954--125018 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
124944 CCAACGTTTA
124954 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
124970 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
124986 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
125002 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
125018 T
1 T
125019 TTATTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.08, C:0.12, G:0.23, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:125916 original size:17 final size:15
Alignment explanation
Indices: 125888--125928 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
125878 TCATGTTTAT
125888 ATATTTTTAAAATAA
1 ATATTTTTAAAATAA
*
125903 ATATTATTTAAAA-AT
1 ATATT-TTTAAAATAA
125918 AT-TTTTTAAAA
1 ATATTTTTAAAA
125929 ATTTGGATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 7 0.29
14 2 0.08
15 8 0.33
16 7 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATATTTTTAAAATAA
Found at i:125919 original size:13 final size:13
Alignment explanation
Indices: 125901--125930 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
125891 TTTTTAAAAT
125901 AAATATTATTTAA
1 AAATATTATTTAA
*
125914 AAATATTTTTTAA
1 AAATATTATTTAA
125927 AAAT
1 AAAT
125931 TTGGATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AAATATTATTTAA
Found at i:127259 original size:2 final size:2
Alignment explanation
Indices: 127252--127277 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
127242 GAAATGTTGA
127252 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
127278 ACACACACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:139350 original size:27 final size:28
Alignment explanation
Indices: 139312--139372 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
139302 ATTTGGTGTT
*
139312 CTAATTACTTAACC-TTTTTTTCCTGAA
1 CTAATGACTTAACCTTTTTTTTCCTGAA
139339 CTAATGACTTAACCTTTTTTTTCCTGAA
1 CTAATGACTTAACCTTTTTTTTCCTGAA
139367 CTAATG
1 CTAATG
139373 CTTTTGCACC
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 13 0.41
28 19 0.59
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.46
Consensus pattern (28 bp):
CTAATGACTTAACCTTTTTTTTCCTGAA
Found at i:139888 original size:13 final size:13
Alignment explanation
Indices: 139870--139895 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
139860 AATATACTTT
139870 TACTTAATAATTG
1 TACTTAATAATTG
139883 TACTTAATAATTG
1 TACTTAATAATTG
139896 GCATGCCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
TACTTAATAATTG
Found at i:140829 original size:32 final size:32
Alignment explanation
Indices: 140782--140844 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
140772 AGAGTTGAAA
*
140782 TTTTGAGTTATTAGAAAAATAAAAAATTTGAT
1 TTTTGAGTTACTAGAAAAATAAAAAATTTGAT
*
140814 TTTTGTGTTACTAGAAAAATAAAAAATTTGA
1 TTTTGAGTTACTAGAAAAATAAAAAATTTGA
140845 ATAAGTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.46, C:0.02, G:0.13, T:0.40
Consensus pattern (32 bp):
TTTTGAGTTACTAGAAAAATAAAAAATTTGAT
Found at i:141115 original size:156 final size:157
Alignment explanation
Indices: 140895--141250 Score: 425
Period size: 156 Copynumber: 2.3 Consensus size: 157
140885 TTAATTCCTT
* * * *
140895 ATTCATTTTAAGTCCAATTTTTACCTAATTTGAA-TCATATGCTCTTAAACCATCGTAAAATACA
1 ATTCATTTCAAGTTC-ATTTTTACCAAATTTGAACTCACATGCTCTTAAACCATCGTAAAATACA
* * * * * * *
140959 TATGTATTTTTAATTCC-TTTTCGATAACAAATTTTCTATTTTTCAATTTAGTTCCTTAATTTTT
65 TATGTACTTTCAATTCCTTTTTCGATAACAAATTTTCTAATTTTCAATTTAATCCCTCAACTTTT
**
141023 CATAATTTTTTTTATTTCATCAATTCATC
130 CATAA-TTTCCTTATTTCATCAATTCATC
* * * *
141052 CTTCATTTCAAGTAT-ATTTTTACCAAATTTGAACT-ACATGTTCTTAAACCATTGTAGAATACA
1 ATTCATTTCAAGT-TCATTTTTACCAAATTTGAACTCACATGCTCTTAAACCATCGTAAAATACA
* *
141115 TATGTACTTTCAATTCCTTTTTTGATAATAAATTTTCTAATTTTCAATTTAATCCCTCAACTTTT
65 TATGTACTTTCAATTCCTTTTTCGATAACAAATTTTCTAATTTTCAATTTAATCCCTCAACTTTT
* *
141180 CATTATTTCCTTATTTCTTCAATTCATC
130 CATAATTTCCTTATTTCATCAATTCATC
* * * *
141208 ATTTATTTCAAGTTCATTTTCATCAAATTTGAAC-CGCATGCTC
1 ATTCATTTCAAGTTCATTTTTACCAAATTTGAACTCACATGCTC
141251 ATGTACCATA
Statistics
Matches: 167, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
155 1 0.01
156 110 0.66
157 56 0.34
ACGTcount: A:0.29, C:0.18, G:0.05, T:0.48
Consensus pattern (157 bp):
ATTCATTTCAAGTTCATTTTTACCAAATTTGAACTCACATGCTCTTAAACCATCGTAAAATACAT
ATGTACTTTCAATTCCTTTTTCGATAACAAATTTTCTAATTTTCAATTTAATCCCTCAACTTTTC
ATAATTTCCTTATTTCATCAATTCATC
Found at i:141893 original size:3 final size:3
Alignment explanation
Indices: 141887--141935 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
141877 TTTTTTTGTA
**
141887 TAT TAT TAT CGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
141935 T
1 T
141936 TAATTTACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:143811 original size:25 final size:27
Alignment explanation
Indices: 143759--143812 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 27
143749 TATTTGTATT
*
143759 ATGTAAATAATGTGTTAATTCCACTTA
1 ATGTAAATAATGTGTTAATTCCAATTA
* *
143786 ATGTAAAT-ATTTG-TATTTCCAATTA
1 ATGTAAATAATGTGTTAATTCCAATTA
143811 AT
1 AT
143813 TATTTCATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 12 0.50
26 4 0.17
27 8 0.33
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (27 bp):
ATGTAAATAATGTGTTAATTCCAATTA
Found at i:147850 original size:26 final size:25
Alignment explanation
Indices: 147819--147898 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 25
147809 CCAATTTTTG
147819 ACATTCTATCTCTTTGAGACCTTG-A
1 ACATTCT-TCTCTTTGAGACCTTGAA
* *
147844 A-A-TATTCT-TTT-CGACCTTGAA
1 ACATTCTTCTCTTTGAGACCTTGAA
*
147865 ACATTCCCTCTCTTTGAGACCTTGAA
1 ACATT-CTTCTCTTTGAGACCTTGAA
147891 ACATTCTT
1 ACATTCTT
147899 TCCACCTTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
20 7 0.16
21 5 0.12
22 4 0.09
23 3 0.07
24 4 0.09
25 6 0.14
26 14 0.33
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (25 bp):
ACATTCTTCTCTTTGAGACCTTGAA
Found at i:149715 original size:4 final size:4
Alignment explanation
Indices: 149706--150200 Score: 845
Period size: 4 Copynumber: 126.8 Consensus size: 4
149696 CGAGAAAAGT
149706 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
149754 ATAC AT-- ATAC ATAC ATAC AT-- ATAC ATAC ATACC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC
149799 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
149847 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC AGAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
149891 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
149939 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
149987 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
150035 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
150081 ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
150129 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
150177 GTAC --AC ATAC ATAC ATA- ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
150201 AAATTTGCAT
Statistics
Matches: 468, Mismatches: 9, Indels: 28
0.93 0.02 0.06
Matches are distributed among these distances:
2 12 0.03
3 3 0.01
4 449 0.96
5 4 0.01
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:150959 original size:29 final size:29
Alignment explanation
Indices: 150917--151173 Score: 192
Period size: 29 Copynumber: 8.8 Consensus size: 29
150907 GCTTCTCTTG
*
150917 AAAAATCTTTGAGTTTGTTCCTTTTGAAT
1 AAAAATCTTTGAGTTTGTTTCTTTTGAAT
* *
150946 AAAAATCTTGGAGTTTGTTCCTTTTGAAT
1 AAAAATCTTTGAGTTTGTTTCTTTTGAAT
*
150975 AAATATCTTTGAG-TTGTTTCTTTTG-A-
1 AAAAATCTTTGAGTTTGTTTCTTTTGAAT
* * *
151001 AAAAATCTTTGAGTCTATTTATTTT-AA-
1 AAAAATCTTTGAGTTTGTTTCTTTTGAAT
*** * *
151028 AACAAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAA
1 AA-AAA--------TCT-TTGAGTTTGTTTCTTTTGA-AT
*
151068 AAAAATCTTTGAGTTTGTTCCTTTTGAAT
1 AAAAATCTTTGAGTTTGTTTCTTTTGAAT
* *
151097 AAAAATCTTGGAGTTTGTTCCTTTTGAAT
1 AAAAATCTTTGAGTTTGTTTCTTTTGAAT
* *
151126 -AATATCTTTGAG-TCGTTTCTTTTG---
1 AAAAATCTTTGAGTTTGTTTCTTTTGAAT
151150 AAAAATCTTTGAGTTTGTTTCTTT
1 AAAAATCTTTGAGTTTGTTTCTTT
151174 GGAAACAAAA
Statistics
Matches: 185, Mismatches: 26, Indels: 37
0.75 0.10 0.15
Matches are distributed among these distances:
25 11 0.06
26 21 0.11
27 22 0.12
28 24 0.13
29 68 0.37
30 14 0.08
31 3 0.02
36 3 0.02
37 12 0.06
38 1 0.01
39 4 0.02
40 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.47
Consensus pattern (29 bp):
AAAAATCTTTGAGTTTGTTTCTTTTGAAT
Found at i:151095 original size:151 final size:148
Alignment explanation
Indices: 150895--151240 Score: 518
Period size: 149 Copynumber: 2.3 Consensus size: 148
150885 ACGATTTTTG
*
150895 TCTCTTGAGACAGCTTCTCTTG---AAAAATCTTTGAGTTTGTTCCTTTTGAATAAAAATCTTGG
1 TCTCTTGAGACAGTTTCTCTTGAAAAAAAATCTTTGAGTTTGTTCCTTTTGAATAAAAATCTTGG
*
150957 AGTTTGTTCCTTTTGAATAAATATCTTTGAGTTGTTTCTTTTGAAAAAATCTTTGAGTCTATTTA
66 AGTTTGTTCCTTTTGAAT-AATATCTTTGAGTCGTTTCTTTTG-AAAAATCTTTGAGTCTATTTA
* *
151022 TTTTAAAACAAAGTTTTGTC
129 TTTGAAAACAAAATTTTGTC
151042 TCTCTTGAGACAGTTTCTCTTGAAAAAAAAATCTTTGAGTTTGTTCCTTTTGAATAAAAATCTTG
1 TCTCTTGAGACAGTTTCTCTTG-AAAAAAAATCTTTGAGTTTGTTCCTTTTGAATAAAAATCTTG
* * *
151107 GAGTTTGTTCCTTTTGAATAATATCTTTGAGTCGTTTCTTTTGAAAAATCTTTGAGTTTGTTTCT
65 GAGTTTGTTCCTTTTGAATAATATCTTTGAGTCGTTTCTTTTGAAAAATCTTTGAGTCTATTTAT
* *
151172 TTGGAAACAAAATTTTTTC
130 TTGAAAACAAAATTTTGTC
* * * *
151191 TCTCTTAAGATAGTTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCTTT
1 TCTCTTGAGACAGTTTCTCTTGAAA-AAAAATCTTTGAGTTTGTTCCTTT
151241 GAAACAAAAT
Statistics
Matches: 181, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
147 21 0.12
148 3 0.02
149 76 0.42
150 23 0.13
151 58 0.32
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (148 bp):
TCTCTTGAGACAGTTTCTCTTGAAAAAAAATCTTTGAGTTTGTTCCTTTTGAATAAAAATCTTGG
AGTTTGTTCCTTTTGAATAATATCTTTGAGTCGTTTCTTTTGAAAAATCTTTGAGTCTATTTATT
TGAAAACAAAATTTTGTC
Found at i:151208 original size:37 final size:36
Alignment explanation
Indices: 151166--151286 Score: 114
Period size: 37 Copynumber: 3.5 Consensus size: 36
151156 CTTTGAGTTT
*
151166 GTTTCTTTGGAAACAAAATTTTTTCTCTCTTAAGATA
1 GTTTCTTTTGAAACAAAA-TTTTTCTCTCTTAAGATA
* * * *
151203 GTTTCTTTTGAAACAAAA-----ATCT-TTGAGTTT
1 GTTTCTTTTGAAACAAAATTTTTCTCTCTTAAGATA
151233 GTTTC-TTTGAAACAAAATTTTGTCTCTCTTAAGATA
1 GTTTCTTTTGAAACAAAATTTT-TCTCTCTTAAGATA
*
151269 ATTTCTTTTGAAA-AAAAT
1 GTTTCTTTTGAAACAAAAT
151287 CTTTAAATCT
Statistics
Matches: 66, Mismatches: 10, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
29 12 0.18
30 10 0.15
31 3 0.05
35 3 0.05
36 14 0.21
37 24 0.36
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (36 bp):
GTTTCTTTTGAAACAAAATTTTTCTCTCTTAAGATA
Found at i:151301 original size:64 final size:64
Alignment explanation
Indices: 151140--151356 Score: 253
Period size: 64 Copynumber: 3.4 Consensus size: 64
151130 TCTTTGAGTC
*
151140 GTTTCTTTTG--AAAAATCTTTGAGTTTGTTTCTTTGGAAACAAAATTTTTTCTCTCTTAAGATA
1 GTTTCTTTTGAAAAAAATCTTTGAGTTTGTTTCTTT-GAAACAAAATTTTGTCTCTCTTAAGATA
151203 GTTTCTTTTGAAACAAAAATCTTTGAGTTTGTTTCTTTGAAACAAAATTTTGTCTCTCTTAAGAT
1 GTTTCTTTTG-AA-AAAAATCTTTGAGTTTGTTTCTTTGAAACAAAATTTTGTCTCTCTTAAGAT
151268 A
64 A
* * * * * * * *
151269 ATTTCTTTTGAAAAAAATCTTTAAATCTGTTTCTCTT-AAA-ATGAATTTTGTATCTCTTGAGAC
1 GTTTCTTTTGAAAAAAATCTTTGAGTTTGTTTCT-TTGAAACA-AAATTTTGTCTCTCTTAAGAT
*
151332 C
64 A
**
151333 GTTTCTTTTGAAGTAAATCTTTGA
1 GTTTCTTTTGAAAAAAATCTTTGA
151357 ATATGTCCAT
Statistics
Matches: 134, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
63 11 0.08
64 59 0.44
65 4 0.03
66 36 0.27
67 24 0.18
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (64 bp):
GTTTCTTTTGAAAAAAATCTTTGAGTTTGTTTCTTTGAAACAAAATTTTGTCTCTCTTAAGATA
Found at i:151625 original size:63 final size:63
Alignment explanation
Indices: 151526--151676 Score: 175
Period size: 63 Copynumber: 2.4 Consensus size: 63
151516 AGATCCATCA
* *
151526 TTTGAGTCTGTTTCTTTTGAAACAAAATTTTATCTCT-TAAAGACAATTTCTTTTGAAAAAATC
1 TTTGAGTCTATTTCTTTTGAAACAAAATTTTATCTCTCTAAAGACAATTT-TTGTGAAAAAATC
* * **
151589 TTTGAGTCTATTTAC-TTTGAAACAAAGTTTTGTCTCTCTTGAGACAATTTTTGTGAAAAAATC
1 TTTGAGTCTATTT-CTTTTGAAACAAAATTTTATCTCTCTAAAGACAATTTTTGTGAAAAAATC
* * *
151652 -TTGAG-ATGTTTCTTTTGAAAAAAAA
1 TTTGAGTCTATTTCTTTTGAAACAAAA
151677 ATCTTTGAGT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
60 1 0.01
61 14 0.19
62 5 0.07
63 44 0.59
64 11 0.15
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (63 bp):
TTTGAGTCTATTTCTTTTGAAACAAAATTTTATCTCTCTAAAGACAATTTTTGTGAAAAAATC
Found at i:151707 original size:29 final size:29
Alignment explanation
Indices: 151644--151706 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
151634 AATTTTTGTG
*
151644 AAAAAATC-TTGAGATGTTTCTTTTGAAA
1 AAAAAATCTTTGAGATGTTTCCTTTGAAA
*
151672 AAAAAATCTTTGAGTTTGTTTCCTTTGAAA
1 AAAAAATCTTTGAG-ATGTTTCCTTTGAAA
*
151702 CAAAA
1 AAAAA
151707 TTTTGTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 8 0.27
29 5 0.17
30 17 0.57
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.38
Consensus pattern (29 bp):
AAAAAATCTTTGAGATGTTTCCTTTGAAA
Found at i:151774 original size:40 final size:40
Alignment explanation
Indices: 151719--151798 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
151709 TTGTCTCTCG
*
151719 AGACAACTTCTTTTGAAAATACCCACCTTTGAGATCGTTT
1 AGACAACTTCTTTTGAAAATACCCACATTTGAGATCGTTT
*
151759 AGACAACTTCTTTTGAAAATACCCACATTTGATATCGTTT
1 AGACAACTTCTTTTGAAAATACCCACATTTGAGATCGTTT
151799 CTATTAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.36
Consensus pattern (40 bp):
AGACAACTTCTTTTGAAAATACCCACATTTGAGATCGTTT
Found at i:152140 original size:63 final size:62
Alignment explanation
Indices: 152042--152159 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 62
152032 GAAACAAAAC
*
152042 AAACATCTTTGAGATCATTTCCCTTTAAACGAATTTTGTCTCATTT-GAGACAGTTTTCCTTT
1 AAACATCTTTGAGATCATTTCCCTTTAAACAAATTTTGTCTC-TTTGGAGACAGTTTTCCTTT
*
152104 AAACAATCTTTGAG-TCGTTT-CCTTTGAAACAAAATTTTGTCTCTTTGGAGACAGTT
1 AAAC-ATCTTTGAGATCATTTCCCTTT-AAAC-AAATTTTGTCTCTTTGGAGACAGTT
152160 GCTTTTGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
61 5 0.10
62 16 0.32
63 29 0.58
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.42
Consensus pattern (62 bp):
AAACATCTTTGAGATCATTTCCCTTTAAACAAATTTTGTCTCTTTGGAGACAGTTTTCCTTT
Found at i:152208 original size:28 final size:28
Alignment explanation
Indices: 152168--152255 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
152158 TTGCTTTTGA
* *
152168 AAACACATATTTGAGTTTGTTTTTCTTG
1 AAACAAATCTTTGAGTTTGTTTTTCTTG
* *
152196 AAACGAATCTTTGGGTTTGTTTCTT-TTG
1 AAACAAATCTTTGAGTTTGTTT-TTCTTG
* *
152224 AAACAAATCTTT-AATTTGGTTTCTCTTG
1 AAACAAATCTTTGAGTTT-GTTTTTCTTG
152252 AAAC
1 AAAC
152256 CATAATTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
27 4 0.08
28 43 0.88
29 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.47
Consensus pattern (28 bp):
AAACAAATCTTTGAGTTTGTTTTTCTTG
Found at i:152343 original size:40 final size:40
Alignment explanation
Indices: 152284--152641 Score: 181
Period size: 40 Copynumber: 8.6 Consensus size: 40
152274 CCAACCGTCC
*
152284 TCATCACGTAGGAATCGTGTCATCCCCAGACCAGATCTCT
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCT
* * * * *
152324 TCATCACGTATGAGCCGTGTCA-CCCTAGATTAACCAG-CCGTCC
1 TCATCACGTAGGAACCGTGTCATCCCCAG----ACCAGATC-TCT
* * * *
152367 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCA-ACCGTCC
1 TCATCACGTAGGAACCGTGTCATC-CC--CAGA---CCAGATC-TCT
*
152413 TCATCACGTAGGAATCGTGTCATCCCCAGACCAGATCTCT
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCT
* * * * *
152453 TCATCACGTATGAGCCGTG-CA-CCCTAGATAACCAG-CCGTCC
1 TCATCACGTAGGAACCGTGTCATCCCCAG---ACCAGATC-TCT
* * *
152494 TCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCT
1 TCATCACGTAGGAACCGTGTCATC-CC--CAGA---CCAGATCTCT
* * * *
152540 TCATCACGTATGAGCCGTGTCATTCCCTGACCAGATCTCT
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCT
* * * * * * *
152580 TCATCACGTATGAGCAGTGTCAACCCTC-GACTAGATTTCC
1 TCATCACGTAGGAACCGTGTCATCCC-CAGACCAGATCTCT
*
152620 TCATCACGTAGGAACCATGTCA
1 TCATCACGTAGGAACCGTGTCA
152642 CCCTTAGACG
Statistics
Matches: 248, Mismatches: 42, Indels: 56
0.72 0.12 0.16
Matches are distributed among these distances:
38 5 0.02
39 7 0.03
40 100 0.40
41 27 0.11
42 2 0.01
43 34 0.14
44 3 0.01
45 6 0.02
46 60 0.24
47 4 0.02
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (40 bp):
TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCT
Found at i:152414 original size:46 final size:46
Alignment explanation
Indices: 152263--152559 Score: 174
Period size: 46 Copynumber: 6.9 Consensus size: 46
152253 AACCATAATT
* *
152263 CCTTAAGATGGCCA-ACCGTCCTCATCACGTAGGAATCGTGTCATC-
1 CCTT-AGATGGCCAGACCGTCCTCATCACGTAGGAACCGTGTTATCA
* * * * *
152308 CC-CAGA---CCAGATC-TCTTCATCACGTATGAGCCGTG---TCA
1 CCTTAGATGGCCAGACCGTCCTCATCACGTAGGAACCGTGTTATCA
* **
152346 CCCTAGATTAACCAG-CCGTCCTCATCACGTAGGAACCGTGTTATCA
1 CCTTAGA-TGGCCAGACCGTCCTCATCACGTAGGAACCGTGTTATCA
* *
152392 CCTTTAGATGGCCA-ACCGTCCTCATCACGTAGGAATCGTGTCATC-
1 CC-TTAGATGGCCAGACCGTCCTCATCACGTAGGAACCGTGTTATCA
* * * * *
152437 CC-CAGA---CCAGATC-TCTTCATCACGTATGAGCCGTG----CA
1 CCTTAGATGGCCAGACCGTCCTCATCACGTAGGAACCGTGTTATCA
* **
152474 CCCTAGATAACCAG-CCGTCCTCATCACGTAGGAACCGTGTTATCA
1 CCTTAGATGGCCAGACCGTCCTCATCACGTAGGAACCGTGTTATCA
* * * *
152519 CCTTTAGATGGCCAGAAC-TCTTCATCACGTATGAGCCGTGT
1 CC-TTAGATGGCCAGACCGTCCTCATCACGTAGGAACCGTGT
152560 CATTCCCTGA
Statistics
Matches: 192, Mismatches: 34, Indels: 51
0.69 0.12 0.18
Matches are distributed among these distances:
36 1 0.01
37 4 0.02
38 5 0.03
39 3 0.02
40 43 0.22
41 27 0.14
42 1 0.01
43 29 0.15
45 8 0.04
46 66 0.34
47 5 0.03
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (46 bp):
CCTTAGATGGCCAGACCGTCCTCATCACGTAGGAACCGTGTTATCA
Found at i:152572 original size:127 final size:128
Alignment explanation
Indices: 152284--152690 Score: 524
Period size: 127 Copynumber: 3.2 Consensus size: 128
152274 CCAACCGTCC
*
152284 TCATCACGTAGGAATCGTGTCATCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTGTCACCC
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTGTCACCC
* *
152349 TAGATTAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCA-ACCGTCC
66 TAGA-TAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAAC-TCT
*
152413 TCATCACGTAGGAATCGTGTCATCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTG-CACCC
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTGTCACCC
152477 TAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCT
66 TAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCT
* * * * *
152540 TCATCACGTATGAGCCGTGTCATTCCCTGACCAGATCTCTTCATCACGTATGAGCAGTGTCAACC
1 TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTGTC-ACC
* * *** * * * * *
152605 CTCG---ACTAGATTTCCTCATCACGTAGGAACCATG---TCACCCTTAGACGACCCGAACTCT
65 CTAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCT
* * * *
152663 TCATCACGTATGAGCAGTGGCATCCCCA
1 TCATCACGTAGGAACCGTGTCATCCCCA
152691 ACAACCAACA
Statistics
Matches: 253, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
123 44 0.17
126 25 0.10
127 107 0.42
128 12 0.05
129 65 0.26
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (128 bp):
TCATCACGTAGGAACCGTGTCATCCCCAGACCAGATCTCTTCATCACGTATGAGCCGTGTCACCC
TAGATAACCAGCCGTCCTCATCACGTAGGAACCGTGTTATCACCTTTAGATGGCCAGAACTCT
Found at i:152860 original size:3 final size:3
Alignment explanation
Indices: 152852--152898 Score: 78
Period size: 3 Copynumber: 15.7 Consensus size: 3
152842 ATTATCGTTA
152852 TAT TAT TATT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
152897 TA
1 TA
152899 ATTTACATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:152884 original size:17 final size:17
Alignment explanation
Indices: 152852--152896 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
152842 ATTATCGTTA
152852 TATTATTATT-TATTAT
1 TATTATTATTATATTAT
152868 TATTATTATTATATTAT
1 TATTATTATTATATTAT
152885 TATTATTATTAT
1 TATTATTATTAT
152897 TAATTTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 10 0.36
17 18 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTATTATTATATTAT
Found at i:155395 original size:22 final size:23
Alignment explanation
Indices: 155347--155401 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
155337 AATACTCAAT
*
155347 TTTTCAAAATAAAATTCATAATCG
1 TTTTAAAAATAAAATT-ATAATCG
* *
155371 TTTTAAAAATAATATT-TAATTG
1 TTTTAAAAATAAAATTATAATCG
155393 TTTTAAAAA
1 TTTTAAAAA
155402 AAATGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 14 0.50
24 14 0.50
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (23 bp):
TTTTAAAAATAAAATTATAATCG
Found at i:155466 original size:14 final size:14
Alignment explanation
Indices: 155447--155481 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
155437 TTATTGTTTT
155447 AGAAAATGATAGGA
1 AGAAAATGATAGGA
155461 AGAAAATGATAGGA
1 AGAAAATGATAGGA
155475 AGAAAAT
1 AGAAAAT
155482 AAAGGAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.14
Consensus pattern (14 bp):
AGAAAATGATAGGA
Found at i:171027 original size:60 final size:60
Alignment explanation
Indices: 170927--171042 Score: 155
Period size: 60 Copynumber: 1.9 Consensus size: 60
170917 CTCCGACCAA
* * * *
170927 CGATTACTTAAATTTTCCTAAGTAACAAATATTACTTACATTGGTAATTAGGCTTTCACG
1 CGATTACCTAAATTTCCCTAAGTAACAAATATTACTTACATCGGTAATTAAGCTTTCACG
*
170987 CGATTACCTAAATTTCCCTAAGTAACAACGAT-TTTC-TACATCGGTAATTAAGCTTT
1 CGATTACCTAAATTTCCCTAAGTAACAA--ATATTACTTACATCGGTAATTAAGCTTT
171043 TTAACTACAC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
60 44 0.90
61 3 0.06
62 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (60 bp):
CGATTACCTAAATTTCCCTAAGTAACAAATATTACTTACATCGGTAATTAAGCTTTCACG
Found at i:171995 original size:6 final size:6
Alignment explanation
Indices: 171984--172009 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
171974 ATAAATAAAT
171984 TTCAAC TTCAAC TTCAAC TTCAAC TT
1 TTCAAC TTCAAC TTCAAC TTCAAC TT
172010 GATCCTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (6 bp):
TTCAAC
Found at i:173973 original size:282 final size:282
Alignment explanation
Indices: 173465--174033 Score: 1014
Period size: 282 Copynumber: 2.0 Consensus size: 282
173455 TTTTCCCCTC
173465 CGAATCACTAGATTTATATATTTTTTTACTATTTATAGTAATATTTCGATTGTCAATTAGGAAGT
1 CGAATCACTAGATTTATATATTTTTTTACTATTTATAGTAATATTTCGATTGTCAATTAGGAAGT
*
173530 CAATTTAAATCCGATTTAGGACGAATTTTTTGGAGATTGCTAATTTTATTTCAAATTTCAATTTA
66 CAATTTAAATCCGATTTAGGACGAATCTTTTGGAGATTGCTAATTTTATTTCAAATTTCAATTTA
* *
173595 GAGTGATTTTTAGGATTTTGTTATTTTTGGCAAAATTCGAATAAAGACGATTTTTGGCTAAACAG
131 GAGTGATTTTGAGGATTTTGCTATTTTTGGCAAAATTCGAATAAAGACGATTTTTGGCTAAACAG
*
173660 TCCGGCTTGTGGACTGATTTTGGGGGATTGTTTGATTTTATAATATTTTATTAAACACTAGAGAC
196 TCCGGCTTGTGGACTGATTTTGGGAGATTGTTTGATTTTATAATATTTTATTAAACACTAGAGAC
173725 TTTTTTCTCTGGTTTTTTTGGG
261 TTTTTTCTCTGGTTTTTTTGGG
* *
173747 CGAATCACTAGATTTATATTTTTTTTTACTATTTATGGTAATATTTCGATTGTCAATTAGGAAGT
1 CGAATCACTAGATTTATATATTTTTTTACTATTTATAGTAATATTTCGATTGTCAATTAGGAAGT
* * * *
173812 CAATTTAAATCCGATTTAGGCCGGATCTTTTGGAGATTGCTTATTTTATTTCGAATTTCAATTTA
66 CAATTTAAATCCGATTTAGGACGAATCTTTTGGAGATTGCTAATTTTATTTCAAATTTCAATTTA
173877 GAGTGATTTTCGA-GATTTTGCTATTTTTGGCAAAATTCGAATAAAGACGATTTTTGGCTAAACA
131 GAGTGATTTT-GAGGATTTTGCTATTTTTGGCAAAATTCGAATAAAGACGATTTTTGGCTAAACA
* *
173941 TTCCGGCTTGTGGACTGATTTTGGGAGATTGTTTGATTTTATAATATTTTATTAAATACTAGAGA
195 GTCCGGCTTGTGGACTGATTTTGGGAGATTGTTTGATTTTATAATATTTTATTAAACACTAGAGA
174006 CTTTTTTCTCTGGTTTTTTTGGG
260 CTTTTTTCTCTGGTTTTTTTGGG
174029 CGAAT
1 CGAAT
174034 TTTCTCTTGT
Statistics
Matches: 274, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
282 273 1.00
283 1 0.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (282 bp):
CGAATCACTAGATTTATATATTTTTTTACTATTTATAGTAATATTTCGATTGTCAATTAGGAAGT
CAATTTAAATCCGATTTAGGACGAATCTTTTGGAGATTGCTAATTTTATTTCAAATTTCAATTTA
GAGTGATTTTGAGGATTTTGCTATTTTTGGCAAAATTCGAATAAAGACGATTTTTGGCTAAACAG
TCCGGCTTGTGGACTGATTTTGGGAGATTGTTTGATTTTATAATATTTTATTAAACACTAGAGAC
TTTTTTCTCTGGTTTTTTTGGG
Found at i:185788 original size:20 final size:21
Alignment explanation
Indices: 185763--185804 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
185753 CCAACTTACA
185763 ATGCATTATG-AACCATTATT
1 ATGCATTATGAAACCATTATT
*
185783 ATGCATTATGAAACTATTATT
1 ATGCATTATGAAACCATTATT
185804 A
1 A
185805 GTTGCATGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (21 bp):
ATGCATTATGAAACCATTATT
Found at i:188315 original size:76 final size:76
Alignment explanation
Indices: 188198--188424 Score: 334
Period size: 76 Copynumber: 3.0 Consensus size: 76
188188 TAAACTCAAA
* * * * * *
188198 TTTTAAGATAATA-TTTTAAATATTATATTTGTTTTATGTATTTTAGTTTAAATAGGTTATAGTG
1 TTTTAGGATATTATTTTTATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTG
*
188262 TTTGAATTAAG
66 TTTTAATTAAG
*
188273 TTTTAGGATATTATTTTTATATTTTATCTTAT-TTTTAGGTATTTTAGTTTAAATAGGTTTTAGT
1 TTTTAGGATATTATTTTTATATTTTATATT-TGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGT
*
188337 ATTTTAATTAAG
65 GTTTTAATTAAG
188349 TTTTAGGATATTATTTTTATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATA-GTTTTAAGT
1 TTTTAGGATATTATTTTTATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATAGGTTTT-AGT
188413 GTTTTAATTAAG
65 GTTTTAATTAAG
188425 ATTTGTCCTT
Statistics
Matches: 137, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
75 17 0.12
76 119 0.87
77 1 0.01
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (76 bp):
TTTTAGGATATTATTTTTATATTTTATATTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTG
TTTTAATTAAG
Found at i:188384 original size:32 final size:32
Alignment explanation
Indices: 188330--188391 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
188320 TTTAAATAGG
188330 TTTTAGTATTTTAATTAAGTTTTAGGATATTAT
1 TTTTAGTATTTTAATTAAGTTTTAGG-TATTAT
*
188363 TTTTA-TATTTTATATT-TGTTTTAGGTATT
1 TTTTAGTATTTTA-ATTAAGTTTTAGGTATT
188392 TTAGTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 4 0.15
32 15 0.56
33 8 0.30
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (32 bp):
TTTTAGTATTTTAATTAAGTTTTAGGTATTAT
Found at i:188602 original size:19 final size:18
Alignment explanation
Indices: 188551--188599 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
188541 AATCTCTTTA
188551 ATTTGTTTATTTAATTATT
1 ATTT-TTTATTTAATTATT
* *
188570 TTTCTTTTATTTAATTCTT
1 ATT-TTTTATTTAATTATT
188589 ATTTTTTATTT
1 ATTTTTTATTT
188600 TAAAAACAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 8 0.31
19 17 0.65
20 1 0.04
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTTTTATTTAATTATT
Found at i:190486 original size:21 final size:21
Alignment explanation
Indices: 190462--190526 Score: 130
Period size: 21 Copynumber: 3.1 Consensus size: 21
190452 CATTTCCCCC
190462 AATCCATCAACAGAAATCCCT
1 AATCCATCAACAGAAATCCCT
190483 AATCCATCAACAGAAATCCCT
1 AATCCATCAACAGAAATCCCT
190504 AATCCATCAACAGAAATCCCT
1 AATCCATCAACAGAAATCCCT
190525 AA
1 AA
190527 CATTTCCCTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.45, C:0.32, G:0.05, T:0.18
Consensus pattern (21 bp):
AATCCATCAACAGAAATCCCT
Found at i:192123 original size:23 final size:23
Alignment explanation
Indices: 192086--192149 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
192076 TAGCTTGTAT
*
192086 AAATGCACCGAAGTGTCACGTAG
1 AAATGCACCGAAGTGCCACGTAG
* * *
192109 AATTGCACCGTAGTGCCGCGTAG
1 AAATGCACCGAAGTGCCACGTAG
192132 AAATGCACCGAAGTGCCA
1 AAATGCACCGAAGTGCCA
192150 TATAAGATAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.17
Consensus pattern (23 bp):
AAATGCACCGAAGTGCCACGTAG
Found at i:192256 original size:20 final size:20
Alignment explanation
Indices: 192233--192270 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
192223 CAAAAGACCT
*
192233 CATAGATGTTCCAAAGGATA
1 CATAGATGTCCCAAAGGATA
*
192253 CATATATGTCCCAAAGGA
1 CATAGATGTCCCAAAGGA
192271 CCGCGTAGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (20 bp):
CATAGATGTCCCAAAGGATA
Found at i:197434 original size:55 final size:55
Alignment explanation
Indices: 197328--197435 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
197318 GCATTCAGAT
** *
197328 GATTCATGAAGAAGAACATTTGACGAATGAAGAAATTTGAACCTAACTGAAGAAC
1 GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTAACTGAAGAAC
* * *
197383 GATTCATGAAGAATG-ACATCCGATGAATGAAGAAATTTGAAACTGATTGAAGA
1 GATTCATGAAGAA-GAACATCCGACGAATGAAGAAATTTGAAACTAACTGAAGA
197436 CTGATCCACA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 45 0.98
56 1 0.02
ACGTcount: A:0.44, C:0.11, G:0.21, T:0.23
Consensus pattern (55 bp):
GATTCATGAAGAAGAACATCCGACGAATGAAGAAATTTGAAACTAACTGAAGAAC
Found at i:197450 original size:55 final size:55
Alignment explanation
Indices: 197352--197457 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 55
197342 AACATTTGAC
* * ** *
197352 GAATGAAGAAATTTGAACCTAACTGAAGAACGATTCATGAAGAATGACATCCGAT
1 GAATGAAGAAATTTGAAACTAACTGAAGAACGATCCACAAAGAAAGACATCCGAT
* *
197407 GAATGAAGAAATTTGAAACTGATTGAAG-ACTGATCCACAAAGAAAGACATC
1 GAATGAAGAAATTTGAAACTAACTGAAGAAC-GATCCACAAAGAAAGACATC
197458 ATGAAGATCT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 2 0.05
55 41 0.95
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (55 bp):
GAATGAAGAAATTTGAAACTAACTGAAGAACGATCCACAAAGAAAGACATCCGAT
Found at i:198236 original size:72 final size:72
Alignment explanation
Indices: 198119--198269 Score: 257
Period size: 72 Copynumber: 2.1 Consensus size: 72
198109 CCCTATTACA
* *
198119 CAAGAAAATATGAAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
1 CAAGAACAGATGAAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
*
198184 AAATGAT
66 AAATAAT
*
198191 CAAGAACAGATGAAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAGCCAATGTGATGATAGC
1 CAAGAACAGATGAAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
*
198256 AACTAAT
66 AAATAAT
198263 CAAGAAC
1 CAAGAAC
198270 CTATTAGGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.23
Consensus pattern (72 bp):
CAAGAACAGATGAAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAACCAATGTGATGATAGC
AAATAAT
Found at i:202991 original size:36 final size:36
Alignment explanation
Indices: 202912--202999 Score: 124
Period size: 36 Copynumber: 2.4 Consensus size: 36
202902 GTCTTCACCA
* * *
202912 AAGAGTAGTGAAGCAAATCCATTTTGAGCCTTCACT
1 AAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACG
202948 AACGAGTAGTGAAGCAAA-CCATCTTAAGCCTTCATCG
1 AA-GAGTAGTGAAGCAAATCCATCTTAAGCCTTCA-CG
202985 AAGAGTAGTGAAGCA
1 AAGAGTAGTGAAGCA
203000 TATCTTTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
36 29 0.62
37 18 0.38
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (36 bp):
AAGAGTAGTGAAGCAAATCCATCTTAAGCCTTCACG
Found at i:203486 original size:54 final size:54
Alignment explanation
Indices: 203405--203565 Score: 277
Period size: 54 Copynumber: 3.0 Consensus size: 54
203395 GTAGTAAAGC
* * **
203405 AGAAGAAAATGTTCGAGTTTCATACTCCCTAGAGAAAGAGAGAGCGAACGTGTA
1 AGAAGAAAATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
203459 AGAAGAAAATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
1 AGAAGAAAATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
*
203513 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGT
1 AGAAGAAAATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGT
203566 TTGTTGAAGA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 102 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.18
Consensus pattern (54 bp):
AGAAGAAAATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
Found at i:203575 original size:54 final size:55
Alignment explanation
Indices: 203468--203939 Score: 412
Period size: 55 Copynumber: 8.7 Consensus size: 55
203458 AAGAAGAAAA
* * * ** **
203468 TGTTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTAAGAAGAAGA-
1 TGTTCGAGTTCCATACTCTCTGA-AGAAATAGGGAGCGGACCCGTTTGTTGAAGAT
* * *
203522 TGTTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGTTGAAGAT
1 TGTTCGAGTTCCATACTCTCTGA-AGAAATAGGGAGCGGACCCGTTTGTTGAAGAT
* * * * ** *
203577 TTTTCAAGTTCTATACTCTCTGAAGGAATAGAAAGCGGACCCGTTTATTGAAGAT
1 TGTTCGAGTTCCATACTCTCTGAAGAAATAGGGAGCGGACCCGTTTGTTGAAGAT
* * * * *
203632 TGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACTCGTTT-TATAAAGAT
1 TGTTCGAGTTCCATACTCTCTGAAGAAATAGGGAGCGGACCCGTTTGT-TGAAGAT
*
203687 TGTTCGAG-TCCTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGTTGAAGA-
1 TGTTCGAGTTCC-ATACTCTCTGAAGAAATAGGGAGCGGACCCGTTTGTTGAAGAT
* ***
203741 ---TCAAG-TCCTATACTCTCTGAAGAAATAGGGAGCGGACATATTTGTTGAAGAT
1 TGTTCGAGTTCC-ATACTCTCTGAAGAAATAGGGAGCGGACCCGTTTGTTGAAGAT
* * * * *
203793 TGTTCGAGTTCTATACACTCTGAAGGAATAGAGAGCGGACCCGTTTTATTGAAGAT
1 TGTTCGAGTTCCATACTCTCTGAAGAAATAGGGAGCGGACCCG-TTTGTTGAAGAT
* * * **
203849 TGTTCGAG-TCTTATACTCCCTGAATG-AATAGGGAGCAGACATGTTTGTTGAAGAT
1 TGTTCGAGTTC-CATACTCTCTGAA-GAAATAGGGAGCGGACCCGTTTGTTGAAGAT
* * *
203904 TGTTCGAG-TCTTATACTCCCTGAAGGAATAGGGAGC
1 TGTTCGAGTTC-CATACTCTCTGAAGAAATAGGGAGC
203940 AGACTTATCA
Statistics
Matches: 361, Mismatches: 43, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
51 48 0.13
54 54 0.15
55 211 0.58
56 47 0.13
57 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (55 bp):
TGTTCGAGTTCCATACTCTCTGAAGAAATAGGGAGCGGACCCGTTTGTTGAAGAT
Found at i:203619 original size:55 final size:55
Alignment explanation
Indices: 203517--203939 Score: 441
Period size: 55 Copynumber: 7.8 Consensus size: 55
203507 CCCGTAAGAA
* * * * * * *
203517 GAAGA-TGTTCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGA-AGGAATAGAGAGCGGACACGTTTGTT
* * * * *
203571 GAAGATTTTTCAAGTTCTATACTCTCTGAAGGAATAGAAAGCGGACCCGTTTATT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGTT
*
203626 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACTCGTTT-TAT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGT-T
* * * *
203681 AAAGATTGTTCGAGTCCTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGTT
* * * * **
203736 GAAGA----TCAAGTCCTATACTCTCTGAAGAAATAGGGAGCGGACATATTTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGTT
* * *
203787 GAAGATTGTTCGAGTTCTATACACTCTGAAGGAATAGAGAGCGGACCCGTTTTATT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACG-TTTGTT
* * * * *
203843 GAAGATTGTTCGAG-TCTTATACTCCCTGAATGAATAGGGAGCAGACATGTTTGTT
1 GAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGTT
* *
203898 GAAGATTGTTCGAG-TCTTATACTCCCTGAAGGAATAGGGAGC
1 GAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGC
203940 AGACTTATCA
Statistics
Matches: 318, Mismatches: 41, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
51 48 0.15
54 6 0.02
55 218 0.69
56 46 0.14
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (55 bp):
GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACACGTTTGTT
Found at i:203793 original size:161 final size:163
Alignment explanation
Indices: 203518--203939 Score: 532
Period size: 161 Copynumber: 2.6 Consensus size: 163
203508 CCGTAAGAAG
* * *
203518 AAGA-TGTTCGAGTTCC-ATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTGTTGAAGATTTT
1 AAGATTGTTCGAG-TCCTATACTCCCTGA-AGAAATAGGGAGCGGACACGTTTGTTGAAGA---T
* ** * *
203580 TCAAGTTCTATACTCTCTGAAGGAATAGAAAGCGGACCCGTTTATTGAAGATTGTTCGAGTTCTA
61 TCAAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACATTTATTGAAGATTGTTCGAGTTCTA
* *
203645 TACTCTCTGAAGGAATAGAGAGCGGACTCGTTTTA-TA
126 TACACTCTGAAGGAATAGAGAGCGGACCCGTTTTATTA
*
203682 AAGATTGTTCGAGTCCTATACTCTCTGAAGAAATAGGGAGCGGACACGTTTGTTGAAGA-TCAAG
1 AAGATTGTTCGAGTCCTATACTCCCTGAAGAAATAGGGAGCGGACACGTTTGTTGAAGATTCAAG
* * *
203746 TCCTATACTCTCTGAAGAAATAGGGAGCGGACATATTTGTTGAAGATTGTTCGAGTTCTATACAC
66 TCCTATACTCTCTGAAGGAATAGGGAGCGGACACATTTATTGAAGATTGTTCGAGTTCTATACAC
*
203811 TCTGAAGGAATAGAGAGCGGACCCGTTTTATTG
131 TCTGAAGGAATAGAGAGCGGACCCGTTTTATTA
* * *
203844 AAGATTGTTCGAGTCTTATACTCCCTGAATG-AATAGGGAGCAGACATGTTTGTTGAAGATTGTT
1 AAGATTGTTCGAGTCCTATACTCCCTGAA-GAAATAGGGAGCGGACACGTTTGTTGAAGA---TT
* * *
203908 CGAGTCTTATACTCCCTGAAGGAATAGGGAGC
62 CAAGTCCTATACTCTCTGAAGGAATAGGGAGC
203940 AGACTTATCA
Statistics
Matches: 226, Mismatches: 23, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
161 90 0.40
162 54 0.24
163 1 0.00
164 7 0.03
165 44 0.19
166 30 0.13
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (163 bp):
AAGATTGTTCGAGTCCTATACTCCCTGAAGAAATAGGGAGCGGACACGTTTGTTGAAGATTCAAG
TCCTATACTCTCTGAAGGAATAGGGAGCGGACACATTTATTGAAGATTGTTCGAGTTCTATACAC
TCTGAAGGAATAGAGAGCGGACCCGTTTTATTA
Found at i:210203 original size:13 final size:13
Alignment explanation
Indices: 210185--210232 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
210175 CTCAATGAAC
210185 GTCATAAATACGT
1 GTCATAAATACGT
*
210198 GTCATAAATATGT
1 GTCATAAATACGT
*
210211 GTCATAAATACGC
1 GTCATAAATACGT
210224 GTCATAAAT
1 GTCATAAAT
210233 TTATGACGCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
GTCATAAATACGT
Found at i:211088 original size:22 final size:21
Alignment explanation
Indices: 211037--211089 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
211027 TGTACTCCTT
211037 TTCCTATAATTGATACATTAA
1 TTCCTATAATTGATACATTAA
* * **
211058 TGCCATATAATTTATATTTCTAA
1 TTCC-TATAATTGATACAT-TAA
211081 TTCCTATAA
1 TTCCTATAA
211090 CATCCTCACA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 3 0.12
22 16 0.64
23 6 0.24
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (21 bp):
TTCCTATAATTGATACATTAA
Found at i:217652 original size:31 final size:31
Alignment explanation
Indices: 217617--217695 Score: 108
Period size: 31 Copynumber: 2.5 Consensus size: 31
217607 CTTAGGTAAT
* *
217617 AAGGTTAAGGAATCAAATGTACCTAAAATA-A
1 AAGGTTAA-GAATTAAATGTACCAAAAATATA
217648 AAGGTTAAAGAATTAAATGTACCAAAAATATA
1 AAGGTT-AAGAATTAAATGTACCAAAAATATA
217680 AA-GTTAAGAATTAAAT
1 AAGGTTAAGAATTAAAT
217696 ATCAGCAAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
30 11 0.25
31 28 0.64
32 5 0.11
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.25
Consensus pattern (31 bp):
AAGGTTAAGAATTAAATGTACCAAAAATATA
Found at i:232902 original size:220 final size:215
Alignment explanation
Indices: 232582--233041 Score: 630
Period size: 220 Copynumber: 2.1 Consensus size: 215
232572 ACTTTATTTT
*
232582 GGTCGGGTCGGGTTCGAGTTTAGGGTGAAAAAACCGACCCGACCCGACCTGAAAATATATATAAT
1 GGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAACCG---CGA-CCGACCTGAAAATATATATAAT
*
232647 TCAGGTCGTGTCGGATTAAGTCATTGTTTTTATTAAATAAAAACAATTTTTTATTATTTCGGGTC
62 TCAGG-CGTGTCGGATTAAGTCACTGTTTTTATTAAATAAAAACAATTTTTTATTATTTCGGGTC
*
232712 GGGTCGGGTTGGATTTCTAATTCATATATTCGGGTCGGGTCGGATGAAACTTTATTTTGTTCGGG
126 GGGTCGGGTCGGATTTCTAATTCATATA-T----TCGGGTCGGATGAAACTTTATTTTGTTC--G
232777 ACGAGTCGGGTCGGGTTTTTTTAAGTGTGATATTCG
184 --G-GTCGGGTCGGG-TTTTTTAAGTGTGATATTCG
*
232813 GGTCGGGTTGGGTTCGGGTTTAGGGTGAAAAAACCG-GA-CGA-CTCGAAAATATATATAATTC-
1 GGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAACCGCGACCGACCT-GAAAATATATATAATTCA
* *
232874 GG-GT-T-GGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTTATTATTTCGGGTCGGGT
65 GGCGTGTCGGATTAAGTCACTGTTTTTATTAAATAAAAACAATTTTTTATTATTTCGGGTCGGGT
*
232936 CGGGTCGGATTTCTAATTTATATATTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGTCGG
130 CGGGTCGGATTTCTAATTCATATATTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGTCGG
*
233001 GTTTTTTAAGTGTGATGTTCG
195 GTTTTTTAAGTGTGATATTCG
*
233022 GGTCGAGTCGGG-TCGGGTTT
1 GGTCGGGTCGGGTTCGGGTTT
233042 TTTTAAGTGT
Statistics
Matches: 218, Mismatches: 10, Indels: 25
0.86 0.04 0.10
Matches are distributed among these distances:
208 8 0.04
209 29 0.13
210 11 0.05
211 1 0.00
213 1 0.00
215 28 0.13
219 1 0.00
220 76 0.35
221 1 0.00
222 2 0.01
224 4 0.02
225 20 0.09
227 2 0.01
231 34 0.16
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.37
Consensus pattern (215 bp):
GGTCGGGTCGGGTTCGGGTTTAGGGTGAAAAAACCGCGACCGACCTGAAAATATATATAATTCAG
GCGTGTCGGATTAAGTCACTGTTTTTATTAAATAAAAACAATTTTTTATTATTTCGGGTCGGGTC
GGGTCGGATTTCTAATTCATATATTCGGGTCGGATGAAACTTTATTTTGTTCGGGTCGGGTCGGG
TTTTTTAAGTGTGATATTCG
Found at i:233033 original size:37 final size:38
Alignment explanation
Indices: 232991--233077 Score: 149
Period size: 38 Copynumber: 2.3 Consensus size: 38
232981 TTTTGTTCGG
232991 GTCGGGTCGGG-TTTTTTAAGTGTGATGTTCGGGTCGA
1 GTCGGGTCGGGTTTTTTTAAGTGTGATGTTCGGGTCGA
*
233028 GTCGGGTCGGGTTTTTTTAAGTGTGATGTTCGGGTCGG
1 GTCGGGTCGGGTTTTTTTAAGTGTGATGTTCGGGTCGA
233066 GTCGGGTTCGGG
1 GTCGGG-TCGGG
233078 GTTAGGGTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
37 11 0.23
38 31 0.66
39 5 0.11
ACGTcount: A:0.08, C:0.11, G:0.44, T:0.37
Consensus pattern (38 bp):
GTCGGGTCGGGTTTTTTTAAGTGTGATGTTCGGGTCGA
Found at i:233614 original size:34 final size:34
Alignment explanation
Indices: 233574--233663 Score: 180
Period size: 34 Copynumber: 2.6 Consensus size: 34
233564 CATGTCTGCG
233574 AACCAAACAGAATATGGAATTGGAATTTCCTACC
1 AACCAAACAGAATATGGAATTGGAATTTCCTACC
233608 AACCAAACAGAATATGGAATTGGAATTTCCTACC
1 AACCAAACAGAATATGGAATTGGAATTTCCTACC
233642 AACCAAACAGAATATGGAATTG
1 AACCAAACAGAATATGGAATTG
233664 TATTCCAATT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (34 bp):
AACCAAACAGAATATGGAATTGGAATTTCCTACC
Found at i:238795 original size:24 final size:24
Alignment explanation
Indices: 238751--238834 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 24
238741 ACCGGTTAAA
* *
238751 AAAAAAACGGATTTTT-T-CGGTT
1 AAAAAACCGGTTTTTTATCCGGTT
238773 AAAAAACCGGTTTTTTATCCGGTTT
1 AAAAAACCGGTTTTTTATCCGG-TT
* *
238798 GAAAAAAACCGGTTTTTAATCCGGTA
1 --AAAAAACCGGTTTTTTATCCGGTT
238824 AAAAAACCGGT
1 AAAAAACCGGT
238835 CGTTCAATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
22 14 0.26
23 1 0.02
24 14 0.26
25 2 0.04
26 1 0.02
27 21 0.40
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (24 bp):
AAAAAACCGGTTTTTTATCCGGTT
Found at i:239384 original size:16 final size:16
Alignment explanation
Indices: 239363--239433 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
239353 AGAGTCTCTG
*
239363 AATCATTCAATATTTA
1 AATCATTCAACATTTA
*
239379 AATCATTCAGCATTTA
1 AATCATTCAACATTTA
239395 AATCATTCAACATTTA
1 AATCATTCAACATTTA
* **
239411 AATTATTCAGTATTTA
1 AATCATTCAACATTTA
239427 AATCATT
1 AATCATT
239434 TAGCGCTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.42
Consensus pattern (16 bp):
AATCATTCAACATTTA
Found at i:239404 original size:32 final size:32
Alignment explanation
Indices: 239363--239433 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
239353 AGAGTCTCTG
*
239363 AATCATTCAATATTTAAATCATTCAGCATTTA
1 AATCATTCAACATTTAAATCATTCAGCATTTA
* *
239395 AATCATTCAACATTTAAATTATTCAGTATTTA
1 AATCATTCAACATTTAAATCATTCAGCATTTA
239427 AATCATT
1 AATCATT
239434 TAGCGCTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.42
Consensus pattern (32 bp):
AATCATTCAACATTTAAATCATTCAGCATTTA
Found at i:240103 original size:16 final size:16
Alignment explanation
Indices: 240072--240106 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
240062 ATATAAAATA
240072 TAATTTATATAATTTT
1 TAATTTATATAATTTT
240088 TAATTTATAT-ATTTT
1 TAATTTATATAATTTT
240103 TAAT
1 TAAT
240107 AAAAACTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TAATTTATATAATTTT
Found at i:240441 original size:28 final size:29
Alignment explanation
Indices: 240366--240442 Score: 70
Period size: 28 Copynumber: 2.6 Consensus size: 29
240356 AAATATAACA
*
240366 AATATAATAAATAAAACATTTTATAAAAATT
1 AATATAA-AAATAAAA-ATTCTATAAAAATT
* *
240397 AATCCTAAAAAT-TAAATTCTAT-AAAA-T
1 AAT-ATAAAAATAAAAATTCTATAAAAATT
240424 ACATATAAAAATAAAAATT
1 A-ATATAAAAATAAAAATT
240443 TAATCGAGCA
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
27 9 0.24
28 11 0.29
29 6 0.16
30 2 0.05
31 7 0.18
32 3 0.08
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (29 bp):
AATATAAAAATAAAAATTCTATAAAAATT
Found at i:241172 original size:21 final size:21
Alignment explanation
Indices: 241142--241257 Score: 123
Period size: 21 Copynumber: 5.6 Consensus size: 21
241132 GATTTACATA
*
241142 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
** *
241163 TTCGCGTTGCGATTTTCCAAA
1 TTCGCGTTGCGATAGTCCAAG
*
241184 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* *
241203 TTCGCGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TAGTCCAAG
241226 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
241245 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
241258 TTATTTCAAG
Statistics
Matches: 76, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
19 24 0.32
21 44 0.58
23 8 0.11
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:241224 original size:42 final size:42
Alignment explanation
Indices: 241148--241291 Score: 220
Period size: 42 Copynumber: 3.5 Consensus size: 42
241138 CATATTCGCA
241148 TTGCGATAGTCCAAGTTCGCGTTGCGA-TT-TTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
*
241188 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
* * *
241230 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTTCAAGTTTG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
* *
241272 TTGTGATAGTCGAAGTTCGC
1 TTGCGATAGTCCAAGTTCGC
241292 ACCAAGACCA
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 26 0.27
41 2 0.02
42 67 0.71
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (42 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
Found at i:241306 original size:6 final size:6
Alignment explanation
Indices: 241292--241330 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
241282 CGAAGTTCGC
* *
241292 ACCAAG ACCACG ACCACG ACCAAG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
241331 CGAGACAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.38, C:0.46, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:241315 original size:18 final size:18
Alignment explanation
Indices: 241292--241330 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
241282 CGAAGTTCGC
241292 ACCAAGACCACGACCACG
1 ACCAAGACCACGACCACG
241310 ACCAAGACCACGACCACG
1 ACCAAGACCACGACCACG
241328 ACC
1 ACC
241331 CGAGACAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.46, G:0.15, T:0.00
Consensus pattern (18 bp):
ACCAAGACCACGACCACG
Found at i:241978 original size:21 final size:21
Alignment explanation
Indices: 241954--242212 Score: 223
Period size: 21 Copynumber: 12.6 Consensus size: 21
241944 TTTGGAATAA
*
241954 ATCGTAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
* *
241975 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTGGACT
*
241994 AAATCGCAACGCGAACTTCGACT
1 --ATCGCAACGCGAACTTGGACT
* **
242017 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
*
242036 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* *
242057 ATCGCAA--CGAATTTGGAAT
1 ATCGCAACGCGAACTTGGACT
* *
242076 AAATCGCAATGCGAACTTTGACT
1 --ATCGCAACGCGAACTTGGACT
* **
242099 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
*
242118 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* **
242139 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
*
242158 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
242179 ATCGCAACGCGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
*
242200 ATCGCAATGCGAA
1 ATCGCAACGCGAA
242213 TTATGTAAAT
Statistics
Matches: 186, Mismatches: 38, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
19 64 0.34
21 104 0.56
23 18 0.10
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:242049 original size:40 final size:42
Alignment explanation
Indices: 241934--242187 Score: 430
Period size: 40 Copynumber: 6.2 Consensus size: 42
241924 CCAGTCGTTG
* *
241934 TCGCAACGAATTTGGAATAAATCGTAACGCGAACTTGGACTA
1 TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
241976 TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
1 TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
242018 TCGCAACGAATTTGG-A-AAATCGCAACGCGAACTTCGACTA
1 TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
* *
242058 TCGCAACGAATTTGGAATAAATCGCAATGCGAACTTTGACTA
1 TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
242100 TCGCAACGAATTTGG-A-AAATCGCAACGCGAACTTCGACTA
1 TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
242140 TCGCAACGAATTTGG-A-AAATCGCAACGCGAACTTCGACTA
1 TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
242180 TCGCAACG
1 TCGCAACG
242188 CGAACTTGGA
Statistics
Matches: 204, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
40 109 0.53
41 3 0.01
42 92 0.45
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (42 bp):
TCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTA
Found at i:242226 original size:82 final size:82
Alignment explanation
Indices: 241934--242187 Score: 440
Period size: 82 Copynumber: 3.1 Consensus size: 82
241924 CCAGTCGTTG
* *
241934 TCGCAACGAATTTGGAATAAATCGTAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATC
1 TCGCAACGAATTTGG-A-AAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATC
241999 GCAACGCGAACTTCGACTA
64 GCAACGCGAACTTCGACTA
242018 TCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGC
1 TCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGC
* *
242083 AATGCGAACTTTGACTA
66 AACGCGAACTTCGACTA
242100 TCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGG-A-AAATCGC
1 TCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGC
242163 AACGCGAACTTCGACTA
66 AACGCGAACTTCGACTA
242180 TCGCAACG
1 TCGCAACG
242188 CGAACTTGGA
Statistics
Matches: 164, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
80 30 0.18
81 1 0.01
82 117 0.71
83 1 0.01
84 15 0.09
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (82 bp):
TCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGC
AACGCGAACTTCGACTA
Found at i:242226 original size:122 final size:123
Alignment explanation
Indices: 241934--242212 Score: 429
Period size: 122 Copynumber: 2.3 Consensus size: 123
241924 CCAGTCGTTG
* * * * *
241934 TCGCAACGAATTTGGAATAAATCGTAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATC
1 TCGCAACGAACTTGGAAT-AATCGCAATGCGAACTTTGACAATCGCAACGAATTTGGAATAAATC
241999 GCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTA
65 GCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTA
* *
242058 TCGCAACGAATTTGGAATAAATCGCAATGCGAACTTTGACTATCGCAACGAATTTGG-A-AAATC
1 TCGCAACGAACTTGGAAT-AATCGCAATGCGAACTTTGACAATCGCAACGAATTTGGAATAAATC
242121 GCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTA
65 GCAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTA
*
242180 TCGCAACGCGAACTTGGACT-ATCGCAATGCGAA
1 TCGCAA--CGAACTTGGAATAATCGCAATGCGAA
242213 TTATGTAAAT
Statistics
Matches: 148, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
122 83 0.56
123 1 0.01
124 64 0.43
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (123 bp):
TCGCAACGAACTTGGAATAATCGCAATGCGAACTTTGACAATCGCAACGAATTTGGAATAAATCG
CAACGCGAACTTCGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTCGACTA
Found at i:242246 original size:21 final size:21
Alignment explanation
Indices: 242222--242274 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
242212 ATTATGTAAA
*
242222 TCGCATTGCGATAGTCCAAGT
1 TCGCGTTGCGATAGTCCAAGT
*
242243 TCGCGTTGCGATAGTCGAAGT
1 TCGCGTTGCGATAGTCCAAGT
242264 TCGCGTTGCGA
1 TCGCGTTGCGA
242275 ATCTGGAAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (21 bp):
TCGCGTTGCGATAGTCCAAGT
Found at i:242584 original size:42 final size:42
Alignment explanation
Indices: 242525--242636 Score: 179
Period size: 42 Copynumber: 2.7 Consensus size: 42
242515 CCCGAATTCT
242525 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATATTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATATTTTCC
* *
242567 CGTGTTTGTTTCACGTAATTCATTTTCCGGAAAATGTTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATATTTTCC
* * *
242609 AGTATTTGTTTCACGTAATTGGTTTTCC
1 CGTGTTTGTTTCACGTAATTCGTTTTCC
242637 TGAACGTAGT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.19, C:0.18, G:0.17, T:0.46
Consensus pattern (42 bp):
CGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATATTTTCC
Found at i:242846 original size:28 final size:28
Alignment explanation
Indices: 242815--242878 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
242805 TTTATTTTAA
242815 TAATATAT-AATAAAAAAATTTATATATT
1 TAATA-ATGAATAAAAAAATTTATATATT
* **
242843 TAATAATGAATAATATTATTTATATATT
1 TAATAATGAATAAAAAAATTTATATATT
242871 TAAATAAT
1 T-AATAAT
242879 ATTTTAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.06
28 23 0.74
29 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (28 bp):
TAATAATGAATAAAAAAATTTATATATT
Found at i:242858 original size:19 final size:19
Alignment explanation
Indices: 242836--242888 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
242826 AAAAAAATTT
*
242836 ATATATTTAATAATGAATA
1 ATATATTTAATAATAAATA
*
242855 ATATTATTTATATATTTAAATA
1 ATA-TATTTA-ATA-ATAAATA
242877 ATAT-TTTAATAA
1 ATATATTTAATAA
242889 AGATATTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.21
20 10 0.36
21 4 0.14
22 8 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
ATATATTTAATAATAAATA
Found at i:242909 original size:23 final size:23
Alignment explanation
Indices: 242883--242927 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
242873 AATAATATTT
242883 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
242906 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
242928 ATATAACATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:255858 original size:9 final size:10
Alignment explanation
Indices: 255820--255863 Score: 56
Period size: 9 Copynumber: 4.4 Consensus size: 10
255810 CTTTCATATA
255820 ATTATTTACTT
1 ATTATTTA-TT
255831 ATTTATTTATT
1 A-TTATTTATT
255842 -TTATTTATT
1 ATTATTTATT
255851 ATTA-TTATT
1 ATTATTTATT
255860 ATTA
1 ATTA
255864 ATAATATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
9 18 0.58
10 3 0.10
11 3 0.10
12 7 0.23
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTATTTATT
Found at i:257340 original size:4 final size:4
Alignment explanation
Indices: 257326--257389 Score: 51
Period size: 4 Copynumber: 15.8 Consensus size: 4
257316 TTCATTTACC
* * *
257326 TTTA GTTA TTTA TTTA TTTA TTTA -TT- TTTA TTTTA TTTTA TTTT TTTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA TTTA TTTA
*
257374 TTATA TTTA TATA TTT
1 TT-TA TTTA TTTA TTT
257390 CACCATTTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
3 4 0.08
4 34 0.68
5 12 0.24
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:257350 original size:16 final size:16
Alignment explanation
Indices: 257326--257389 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 16
257316 TTCATTTACC
*
257326 TTTAGTTATTTATTTA
1 TTTATTTATTTATTTA
257342 TTTATTTA-TT-TTTA
1 TTTATTTATTTATTTA
* *
257356 TTTTATTTTATTTTTTTT
1 -TTTA-TTTATTTATTTA
*
257374 TTATATTTATATATTT
1 TT-TATTTATTTATTT
257390 CACCATTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
14 4 0.10
15 6 0.15
16 11 0.28
17 13 0.33
18 5 0.13
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTATTTATTTATTTA
Found at i:257362 original size:11 final size:11
Alignment explanation
Indices: 257342--257383 Score: 52
Period size: 10 Copynumber: 3.9 Consensus size: 11
257332 TATTTATTTA
257342 TTTA-TTTATT
1 TTTATTTTATT
257352 TTTATTTTA-T
1 TTTATTTTATT
*
257362 TTTATTTTTTT
1 TTTATTTTATT
257373 TTTATATTTAT
1 TTTAT-TTTAT
257384 ATATTTCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 13 0.48
11 10 0.37
12 4 0.15
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:257480 original size:13 final size:13
Alignment explanation
Indices: 257462--257491 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
257452 CGAGTTAAAT
257462 TTTTAAATTTTAA
1 TTTTAAATTTTAA
*
257475 TTTTAATTTTTAA
1 TTTTAAATTTTAA
257488 TTTT
1 TTTT
257492 CGTAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAAATTTTAA
Done.