Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008336.1 Hibiscus syriacus cultivar Beakdansim tig00111053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 846240
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
File 3 of 4
Found at i:532397 original size:21 final size:20
Alignment explanation
Indices: 532373--532414 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
532363 GTCATACAAC
*
532373 TAATAATAGTTGTATAATGCA
1 TAATAATAGTT-CATAATGCA
*
532394 TAATAATGGTTCATAATGCA
1 TAATAATAGTTCATAATGCA
532414 T
1 T
532415 TGTAAGTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.38
Consensus pattern (20 bp):
TAATAATAGTTCATAATGCA
Found at i:542851 original size:21 final size:21
Alignment explanation
Indices: 542825--542888 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
542815 TTTTTGTGCA
*
542825 GAGGGAATCGATCCCCCCCAT
1 GAGGGAACCGATCCCCCCCAT
* **
542846 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATCCCCCCCAT
*
542867 GAAGGGGAACCGATTCCCCCCA
1 G-A-GGGAACCGATCCCCCCCA
542889 CAGGGGAATC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.51
22 1 0.03
23 16 0.46
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATCCCCCCCAT
Found at i:542895 original size:21 final size:21
Alignment explanation
Indices: 542827--542908 Score: 62
Period size: 21 Copynumber: 3.8 Consensus size: 21
542817 TTTGTGCAGA
*
542827 GGGAATCGA-TCCCCCC-CATG
1 GGGAACCGATTCCCCCCACA-G
*
542847 AGGGAACCGATTCCCCCTTTGA-AG
1 -GGGAACCGATTCCCCC---CACAG
542871 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTCCCCCCACAG
* *
542892 GGGAATCGATACCCCCC
1 GGGAACCGATTCCCCCC
542909 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
20 1 0.02
21 25 0.50
22 6 0.12
23 16 0.32
24 1 0.02
25 1 0.02
ACGTcount: A:0.23, C:0.38, G:0.24, T:0.15
Consensus pattern (21 bp):
GGGAACCGATTCCCCCCACAG
Found at i:554080 original size:42 final size:42
Alignment explanation
Indices: 553918--554102 Score: 189
Period size: 42 Copynumber: 4.3 Consensus size: 42
553908 GGCCTTAAAC
*
553918 TATAAAAGTAAAAAGT-ATGATTGAAAAAAATTAGAGACCTCAAT
1 TATAAAAGTAAAAAGTGA-GATTG-AAAAAATTAG-GAGCTCAAT
* * * *
553962 TATAAAGGTAAAAAGTAAGATTAAAAAAATAAGG-GCCTCAAT
1 TATAAAAGTAAAAAGTGAGATTGAAAAAATTAGGAG-CTCAAT
*
554004 TAT-AAAGTTAAAAAGTGAGATTGAAAAAATTAGGAGTTCAAT
1 TATAAAAG-TAAAAAGTGAGATTGAAAAAATTAGGAGCTCAAT
* * * *
554046 TATAAAAGTACAAAGTGAGATTGAAAAATTTAGGATCATTAAT
1 TATAAAAGTAAAAAGTGAGATTGAAAAAATTAGGAGC-TCAAT
554089 TA-AAAATGTAAAAA
1 TATAAAA-GTAAAAA
554103 AATTGGGAAT
Statistics
Matches: 119, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
41 3 0.03
42 70 0.59
43 26 0.22
44 19 0.16
45 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.26
Consensus pattern (42 bp):
TATAAAAGTAAAAAGTGAGATTGAAAAAATTAGGAGCTCAAT
Found at i:561834 original size:3 final size:3
Alignment explanation
Indices: 561828--561892 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
561818 TTTTTATCCA
561828 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
561876 TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
561893 AATATATATT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:575923 original size:83 final size:83
Alignment explanation
Indices: 575784--576422 Score: 998
Period size: 83 Copynumber: 7.7 Consensus size: 83
575774 CATTAACTGA
* *
575784 AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAG-CAG
*
575848 AATCAATCATTGAATTTGG
65 AACCAATCATTGAATTTGG
* *
575867 AAGATGGATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGCAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
575932 ACCAATCATTGAATTTGG
66 ACCAATCATTGAATTTGG
* * *
575950 AAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAG-CAG
*
576014 AACCAATCATTGAATTTAG
65 AACCAATCATTGAATTTGG
* *
576033 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAGCAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
*
576098 ACCAATCATTGAATTGGG
66 ACCAATCATTGAATTTGG
*
576116 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGCA-A
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
* *
576180 AACAATCATTGAATTTAG
66 ACCAATCATTGAATTTGG
* * *
576198 AAGATGAATTTGCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGG-TTGGACAG
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAG-CAG
*
576262 AACCAATCATTGAATTTAG
65 AACCAATCATTGAATTTGG
* * *
576281 AAGATGAATTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAGCAGA
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
*
576346 ACCAATCATTGAATTGGG
66 ACCAATCATTGAATTTGG
* *
576364 AAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
1 AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
576423 GGTAAGAACT
Statistics
Matches: 510, Mismatches: 40, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
81 3 0.01
82 74 0.15
83 424 0.83
84 9 0.02
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37
Consensus pattern (83 bp):
AAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAGA
ACCAATCATTGAATTTGG
Found at i:576304 original size:248 final size:249
Alignment explanation
Indices: 575784--576422 Score: 1113
Period size: 248 Copynumber: 2.6 Consensus size: 249
575774 CATTAACTGA
* * *
575784 AAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGACAG
1 AAGATGAATTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAG-CAG
* * *
575848 AATCAATCATTGAATTTGGAAGATGGATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTA
65 AACCAATCATTGAATTGGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTA
* *
575913 TCTGACCTGGTTTAGCAGAACCAATCATTGAATTTGGAAGATGAATGTGCTCATAGCATCTTCTG
130 TCTGACCTGGTTTAGCAGAAACAATCATTGAATTTAGAAGATGAATGTGCTCATAGCATCTTCTG
575978 GAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
195 GAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
*
576033 AAGATGAATTTGTTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAGCAGA
1 AAGATGAATTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAGCAGA
576098 ACCAATCATTGAATTGGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
66 ACCAATCATTGAATTGGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
*
576163 CTGACCTGGTTTAGCA-AAACAATCATTGAATTTAGAAGATGAATTTGC-CAATAGCATCTTCTG
131 CTGACCTGGTTTAGCAGAAACAATCATTGAATTTAGAAGATGAATGTGCTC-ATAGCATCTTCTG
*
576226 GAAGTGTTCTTTGAGTTATTTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
195 GAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
576281 AAGATGAATTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAGCAGA
1 AAGATGAATTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAGCAGA
* *
576346 ACCAATCATTGAATTGGGAAGATGAATATGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
66 ACCAATCATTGAATTGGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
*
576411 CTGATCTGGTTT
131 CTGACCTGGTTT
576423 GGTAAGAACT
Statistics
Matches: 373, Mismatches: 15, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
247 1 0.00
248 234 0.63
249 135 0.36
250 3 0.01
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37
Consensus pattern (249 bp):
AAGATGAATTTGTTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTAGCAGA
ACCAATCATTGAATTGGGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAT
CTGACCTGGTTTAGCAGAAACAATCATTGAATTTAGAAGATGAATGTGCTCATAGCATCTTCTGG
AAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAG
Found at i:577366 original size:114 final size:112
Alignment explanation
Indices: 577072--577694 Score: 792
Period size: 114 Copynumber: 5.5 Consensus size: 112
577062 ATTCAAATCT
* * *
577072 ATCATTTGATGGATTGA-CATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 ATCAATTGATGGA-TCATCATTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
577136 AGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTCTGCCT-AATTC
65 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAA-CTTTTGCCTGAATTC
* * *
577184 TATCACTTGATGGATCAGCATTGT-TAG-GTCAA--TTCATAATGAGAAGAACTCATCTGAAGAA
1 -ATCAATTGATGGATCATCATT-TCCAGAG--AAGGTTCATAATGAGAAGAACTCATCTGAAGAA
*
577245 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACATTTTTCCTGAATTC
62 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAC-TTTTGCCTGAATTC
* *
577297 ATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 ATC-AATTGATGGATCATCATTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
** *
577362 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTTTCTAAATTC
65 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAA-CTTTTGCCTGAATTC
* *
577411 ATCAAATTGATGGATTATCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 ATC-AATTGATGGATCATCATTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
577476 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTC
65 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAA-CTTTTGCCTGAATTC
* * * *
577525 ATCATTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
1 ATCAATTGATGGATCATCATTTCCAGAGAAG-GTTCATAATGAGAAGAA--C-TCATCTGAAGAA
* *
577589 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTC
62 GGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAA-CTTTTGCCTGAATTC
* ** *
577641 ATCATTTGATGGATCATCATCCCCAGCAGAAAGTTCATAATGAGAAGAACTCAT
1 ATCAATTGATGGATCATCATTTCCAG-AGAAGGTTCATAATGAGAAGAACTCAT
577695 TTGGAGAGAG
Statistics
Matches: 462, Mismatches: 30, Indels: 35
0.88 0.06 0.07
Matches are distributed among these distances:
111 1 0.00
112 82 0.18
113 74 0.16
114 196 0.42
115 3 0.01
116 87 0.19
117 17 0.04
118 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (112 bp):
ATCAATTGATGGATCATCATTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAA
GAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTGCCTGAATTC
Found at i:577856 original size:3 final size:3
Alignment explanation
Indices: 577850--577905 Score: 94
Period size: 3 Copynumber: 18.7 Consensus size: 3
577840 TTTTTATCCA
* *
577850 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
577898 TAT TAT TA
1 TAT TAT TA
577906 AATATATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:578436 original size:21 final size:20
Alignment explanation
Indices: 578412--578451 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
578402 GAAACTAGAG
*
578412 ACAGAGACAGAGAAAAAAAAA
1 ACAGAGAAAG-GAAAAAAAAA
578433 ACAGAGAAAGGAAAAAAAA
1 ACAGAGAAAGGAAAAAAAA
578452 TAAACTATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.72, C:0.07, G:0.20, T:0.00
Consensus pattern (20 bp):
ACAGAGAAAGGAAAAAAAAA
Found at i:579371 original size:20 final size:21
Alignment explanation
Indices: 579333--579371 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
579323 TGATATTTTT
**
579333 ATTTTATTATATTGTTAAAAA
1 ATTTTATTATATTCATAAAAA
579354 ATTTTA-TATATTCATAAA
1 ATTTTATTATATTCATAAA
579372 TATACATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (21 bp):
ATTTTATTATATTCATAAAAA
Found at i:580397 original size:59 final size:60
Alignment explanation
Indices: 580317--580433 Score: 157
Period size: 59 Copynumber: 2.0 Consensus size: 60
580307 TGCGACTATT
* * ** *
580317 TTTTAAATTAATTTTTGAACTTTTGA-ATATTCTAATTTCATCTTTAAATTATGATTCTTA
1 TTTTAAATTAATTCTTAAACTTTT-ACATATTCTAATTTCATCTCCAAATTATAATTCTTA
*
580377 TTTTAAATTAA-TCTTAAACTTTTACATATTTTAATTTCATCTCCAAATTATAATTCT
1 TTTTAAATTAATTCTTAAACTTTTACATATTCTAATTTCATCTCCAAATTATAATTCT
580434 CAATCTAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
58 1 0.02
59 38 0.76
60 11 0.22
ACGTcount: A:0.33, C:0.11, G:0.03, T:0.53
Consensus pattern (60 bp):
TTTTAAATTAATTCTTAAACTTTTACATATTCTAATTTCATCTCCAAATTATAATTCTTA
Found at i:581527 original size:2 final size:2
Alignment explanation
Indices: 581520--581552 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
581510 AATGCTAATA
581520 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
581553 CTTGTGGAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:582749 original size:39 final size:39
Alignment explanation
Indices: 582706--582782 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
582696 TCACTCATAG
* ***
582706 GGTCTTCTCCATTTGCCTGAAGACGTCATGCAGTCGTAA
1 GGTCTTCTCCATTTGCCTAAAGAAACCATGCAGTCGTAA
*
582745 GGTCTTCTTCATTTGCCTAAAGAAACCATGCAGTCGTA
1 GGTCTTCTCCATTTGCCTAAAGAAACCATGCAGTCGTA
582783 GAGTATTCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (39 bp):
GGTCTTCTCCATTTGCCTAAAGAAACCATGCAGTCGTAA
Found at i:592546 original size:62 final size:62
Alignment explanation
Indices: 592449--592570 Score: 210
Period size: 62 Copynumber: 2.0 Consensus size: 62
592439 ATTTGTGTAC
*
592449 ATTATGATCCGCACCGTTGGTGCTCATGCTTTGATTACATTTGGAGTGCATTATATGTTTTA
1 ATTATGATCCGCACCGTTGGTGCTCATGCTTTGATTACACTTGGAGTGCATTATATGTTTTA
*
592511 ATTATGATCCGCACCGTTGGTGCTCATG-TTATGATTTCACTTGGAGTGCATTATATGTTT
1 ATTATGATCCGCACCGTTGGTGCTCATGCTT-TGATTACACTTGGAGTGCATTATATGTTT
592571 CAATGCACAC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
61 2 0.04
62 55 0.96
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.42
Consensus pattern (62 bp):
ATTATGATCCGCACCGTTGGTGCTCATGCTTTGATTACACTTGGAGTGCATTATATGTTTTA
Found at i:594000 original size:19 final size:19
Alignment explanation
Indices: 593964--594002 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
593954 GGATGTATGG
* * *
593964 TTTTTAAATTATATTTAAA
1 TTTTTAAATAAAAGTTAAA
593983 TTTTTAAATAAAAGTTAAA
1 TTTTTAAATAAAAGTTAAA
594002 T
1 T
594003 GCTTAAATCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
TTTTTAAATAAAAGTTAAA
Found at i:595746 original size:2 final size:2
Alignment explanation
Indices: 595741--595767 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
595731 AAAAATTAAA
595741 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
595768 AACACTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:597825 original size:35 final size:35
Alignment explanation
Indices: 597779--597849 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
597769 TAACATCCTC
597779 AATACCGGGTGATTAAATGTAACACCCCAACCCGT
1 AATACCGGGTGATTAAATGTAACACCCCAACCCGT
*
597814 AATACCGGGTGATTAAATGTAACACCCCAACTCGT
1 AATACCGGGTGATTAAATGTAACACCCCAACCCGT
597849 A
1 A
597850 TTCAACCCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (35 bp):
AATACCGGGTGATTAAATGTAACACCCCAACCCGT
Found at i:598119 original size:28 final size:28
Alignment explanation
Indices: 598079--598134 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
598069 GATATGATCT
598079 TTGAGCAGAGATATGTTGTTCCTTTGAA
1 TTGAGCAGAGATATGTTGTTCCTTTGAA
*
598107 TTGAGTAGAGATATGTTGTTCCTTTGAA
1 TTGAGCAGAGATATGTTGTTCCTTTGAA
598135 CTTAGCTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.41
Consensus pattern (28 bp):
TTGAGCAGAGATATGTTGTTCCTTTGAA
Found at i:598533 original size:31 final size:31
Alignment explanation
Indices: 598438--598563 Score: 128
Period size: 31 Copynumber: 4.1 Consensus size: 31
598428 ATGTCCCGAA
* * * *
598438 AAACTAGTCCATATATTCTGAAAAACATAGGT
1 AAAC-AGTCCATATGTCCCGAAGAACATAGGT
** * * *
598470 AATGAGTCTATATGT-TCGAAAAACATAGGT
1 AAACAGTCCATATGTCCCGAAGAACATAGGT
* *
598500 AAACAGTCCATATGTCCCGCAGAACATAAGT
1 AAACAGTCCATATGTCCCGAAGAACATAGGT
*
598531 AAACAGTCCATATGTTCCGAAGAACATAGGT
1 AAACAGTCCATATGTCCCGAAGAACATAGGT
598562 AA
1 AA
598564 CCCTCGACTC
Statistics
Matches: 77, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
30 25 0.32
31 50 0.65
32 2 0.03
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (31 bp):
AAACAGTCCATATGTCCCGAAGAACATAGGT
Found at i:599218 original size:20 final size:20
Alignment explanation
Indices: 599195--599233 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
599185 ATAGGTATTG
599195 GTACCCTCTATAGGGTATCA
1 GTACCCTCTATAGGGTATCA
599215 GTACCCTCTATAGGGTATC
1 GTACCCTCTATAGGGTATC
599234 GAAACATCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (20 bp):
GTACCCTCTATAGGGTATCA
Found at i:602887 original size:31 final size:31
Alignment explanation
Indices: 602840--602962 Score: 201
Period size: 31 Copynumber: 4.0 Consensus size: 31
602830 GAGTCGAGGG
* *
602840 TTACCTATGTTTTTCGGAACATATGGGCTGT
1 TTACCTATGTTCTTCGGAACATATGGACTGT
* *
602871 TTAACTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGAACATATGGACTGT
*
602902 TTACCTATGTTCTTCGGAACATATGGACTGA
1 TTACCTATGTTCTTCGGAACATATGGACTGT
602933 TTACCTATGTTCTTCGGAACATATGGACTG
1 TTACCTATGTTCTTCGGAACATATGGACTG
602963 GTCCTTCGGG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 85 1.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGAACATATGGACTGT
Found at i:604089 original size:30 final size:30
Alignment explanation
Indices: 604029--604102 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
604019 TCACACGTGT
* *
604029 ACATGCCACGTCAGCATTTAGTATACATGG
1 ACATGCCACGTCAGCATATAATATACATGG
** *
604059 ATC-TGCCACGTCTTCATATAATATATATGG
1 A-CATGCCACGTCAGCATATAATATACATGG
*
604089 ACATGCCACATCAG
1 ACATGCCACGTCAG
604103 TATCTCCCTC
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
29 1 0.03
30 32 0.94
31 1 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (30 bp):
ACATGCCACGTCAGCATATAATATACATGG
Found at i:606726 original size:23 final size:23
Alignment explanation
Indices: 606708--606772 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 23
606698 GGTTAGGGTA
*
606708 GGCTCCGGGTCGGGTTTAGTTTG
1 GGCTCCGGGTCGGGTTTAGGTTG
*
606731 GGTTCCGGGTCGGGTTCT-GGTTTG
1 GGCTCCGGGTCGGGTT-TAGG-TTG
606755 GGCTCCGGGTCTGGGTTT
1 GGCTCCGGGTC-GGGTTT
606773 TGTTTTGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 16 0.44
24 15 0.42
25 5 0.14
ACGTcount: A:0.02, C:0.18, G:0.45, T:0.35
Consensus pattern (23 bp):
GGCTCCGGGTCGGGTTTAGGTTG
Found at i:606761 original size:24 final size:23
Alignment explanation
Indices: 606708--606777 Score: 95
Period size: 24 Copynumber: 3.0 Consensus size: 23
606698 GGTTAGGGTA
*
606708 GGCTCCGGGTCGGGTTTAGTTTG
1 GGCTCCGGGTCGGGTTTGGTTTG
*
606731 GGTTCCGGGTCGGGTTCTGGTTTG
1 GGCTCCGGGTCGGGTT-TGGTTTG
*
606755 GGCTCCGGGTCTGGGTTTTGTTT
1 GGCTCCGGGTC-GGGTTTGGTTT
606778 TGGATATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
23 15 0.37
24 21 0.51
25 5 0.12
ACGTcount: A:0.01, C:0.17, G:0.43, T:0.39
Consensus pattern (23 bp):
GGCTCCGGGTCGGGTTTGGTTTG
Found at i:607277 original size:18 final size:19
Alignment explanation
Indices: 607249--607284 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
607239 AAATGAAGGT
607249 TTTCAAAATTTTGGGTTTA
1 TTTCAAAATTTTGGGTTTA
*
607268 TTTC-AAATTTTGTGTTT
1 TTTCAAAATTTTGGGTTT
607285 TCTTTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.22, C:0.06, G:0.14, T:0.58
Consensus pattern (19 bp):
TTTCAAAATTTTGGGTTTA
Found at i:607334 original size:2 final size:2
Alignment explanation
Indices: 607293--607323 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
607283 TTTCTTTTTA
607293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
607324 AAATTATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:621235 original size:35 final size:36
Alignment explanation
Indices: 621156--621241 Score: 99
Period size: 35 Copynumber: 2.4 Consensus size: 36
621146 TAAAACAAAT
*
621156 AAATT-AAACATATA-TAATTATTAATATAATTTTA
1 AAATTGAAACATACATTAATTATTAATATAATTTTA
*
621190 AAATTTAAACATACATTAATTA-TAATATAATTTTTA
1 AAATTGAAACATACATTAATTATTAATATAA-TTTTA
*
621226 CAA-TGAAACATGACAT
1 AAATTGAAACAT-ACAT
621242 AAAAATCAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
34 5 0.11
35 23 0.51
36 17 0.38
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (36 bp):
AAATTGAAACATACATTAATTATTAATATAATTTTA
Found at i:621394 original size:2 final size:2
Alignment explanation
Indices: 621381--621414 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
621371 GCATCCTAAT
*
621381 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
621415 AACTGCATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:626167 original size:116 final size:116
Alignment explanation
Indices: 625957--626193 Score: 277
Period size: 116 Copynumber: 2.0 Consensus size: 116
625947 AAAAAAAGAA
* * * * * **
625957 AAAAAATTGATTAGATTTAATTCAAAATTGAATAAATAAATTAGAGAAATGGAGAAAGAGGGTCA
1 AAAAAATTGATTAAATTTAATTCAAAAATAAATAAATAAATAAGAGAAATGGAAAAAGAGAATCA
* * *
626022 AAAGCTAAACATCTTGTGAAAATATAAATTA-AGGGC-CTTAATTATAAATAT
66 AAAGCTAAACATCTTATGAAAATAAAAATTAGA-GGCTC-TAAATATAAATAT
* *
626073 AAAAAATTGATTAAATTTAATTCAAAAATAAATGAATTAATAAGAGAAATGGAAAAAGAGAAT-A
1 AAAAAATTGATTAAATTTAATTCAAAAATAAATAAATAAATAAGAGAAATGGAAAAAGAGAATCA
*
626137 AAA-CTAAA-ACTTTTATGAAATTATAAAAATTAGAGGCTCTAAATATAAATAT
66 AAAGCTAAACA-TCTTATGAAA--ATAAAAATTAGAGGCTCTAAATATAAATAT
626189 AAAAA
1 AAAAA
626194 TCTGGAGTCC
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
113 1 0.01
114 13 0.13
115 4 0.04
116 83 0.81
117 2 0.02
ACGTcount: A:0.54, C:0.05, G:0.13, T:0.28
Consensus pattern (116 bp):
AAAAAATTGATTAAATTTAATTCAAAAATAAATAAATAAATAAGAGAAATGGAAAAAGAGAATCA
AAAGCTAAACATCTTATGAAAATAAAAATTAGAGGCTCTAAATATAAATAT
Found at i:626211 original size:28 final size:28
Alignment explanation
Indices: 626149--626221 Score: 67
Period size: 28 Copynumber: 2.5 Consensus size: 28
626139 ACTAAAACTT
626149 TTATGAAATTATAAAAATTAGAGGCTCTAA
1 TTAT-AAA-TATAAAAATTAGAGGCTCTAA
* * *
626179 ATATAAATATAAAAATCTGGAGTC-CTAA
1 TTATAAATATAAAAAT-TAGAGGCTCTAA
**
626207 TTATACGTATAAAAA
1 TTATAAATATAAAAA
626222 ATTGGGGCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 25 0.69
29 8 0.22
30 3 0.08
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.32
Consensus pattern (28 bp):
TTATAAATATAAAAATTAGAGGCTCTAA
Found at i:626316 original size:2 final size:2
Alignment explanation
Indices: 626311--626362 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
626301 ATAACAATTG
626311 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
626353 AT AT AT AT AT
1 AT AT AT AT AT
626363 GGGCAGGAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:627514 original size:33 final size:32
Alignment explanation
Indices: 627468--627582 Score: 122
Period size: 33 Copynumber: 3.5 Consensus size: 32
627458 ACGGTGGTTC
*
627468 GTATCCTTGTCCGCCGCCGCATTGGATGAGCAT
1 GTATCCTTATCCGCCGCCGCA-TGGATGAGCAT
** ** *
627501 GTATCCTTATCCGCCATCATAGGGGATGAGCAT
1 GTATCCTTATCCGCCGCCGCA-TGGATGAGCAT
* *
627534 GTATCATTATCCGACGCCGCATGAGATGAGCAT
1 GTATCCTTATCCGCCGCCGCATG-GATGAGCAT
*
627567 GTATCCTTATCAGCCG
1 GTATCCTTATCCGCCG
627583 GCATACGGTT
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
32 1 0.02
33 63 0.98
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (32 bp):
GTATCCTTATCCGCCGCCGCATGGATGAGCAT
Found at i:630364 original size:27 final size:29
Alignment explanation
Indices: 630315--630392 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 29
630305 GCAGTGCTCG
*
630315 ACTCGACTCGTTGCTCGTT-AAAA-TT-TT
1 ACTCGAATCG-TGCTCGTTAAAAACTTGTT
*
630342 GCTCGAATCGTGCTCGTTAAAAAACTTGTT
1 ACTCGAATCGTGCTCGTT-AAAAACTTGTT
* *
630372 ACTCGATTTGTGCTCGTTAAA
1 ACTCGAATCGTGCTCGTTAAA
630393 CTCGTTGCTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 8 0.19
27 8 0.19
28 4 0.10
29 5 0.12
30 17 0.40
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (29 bp):
ACTCGAATCGTGCTCGTTAAAAACTTGTT
Found at i:631636 original size:14 final size:14
Alignment explanation
Indices: 631617--631644 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
631607 ATGTTTCGGG
631617 CTTCTCATATATAC
1 CTTCTCATATATAC
631631 CTTCTCATATATAC
1 CTTCTCATATATAC
631645 GAACACTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (14 bp):
CTTCTCATATATAC
Found at i:675852 original size:17 final size:17
Alignment explanation
Indices: 675830--675877 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
675820 TTTCAACATT
675830 TTTGATATTTTGGATTG
1 TTTGATATTTTGGATTG
675847 TTTGAT-TTTGTGGATTG
1 TTTGATATTT-TGGATTG
*
675864 -TTG-GATTTTGGATT
1 TTTGATATTTTGGATT
675878 TATGAATAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 6 0.21
16 9 0.32
17 13 0.46
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (17 bp):
TTTGATATTTTGGATTG
Found at i:676146 original size:30 final size:30
Alignment explanation
Indices: 676112--676183 Score: 126
Period size: 30 Copynumber: 2.3 Consensus size: 30
676102 GGAGAAGAAT
676112 AGGTGTTAAATGTTTTACATAATAAATTGA
1 AGGTGTTAAATGTTTTACATAATAAATTGA
676142 AGGTGTTAAATGTTTTACATAATAAATTGA
1 AGGTGTTAAATGTTTTACATAATAAATTGA
676172 AGAAGTGTTAAA
1 AG--GTGTTAAA
676184 GTAAGGGGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 32 0.80
32 8 0.20
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.38
Consensus pattern (30 bp):
AGGTGTTAAATGTTTTACATAATAAATTGA
Found at i:676699 original size:75 final size:77
Alignment explanation
Indices: 676502--676697 Score: 283
Period size: 76 Copynumber: 2.6 Consensus size: 77
676492 AATTACATAT
* * **
676502 TGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATT-CCCCTAAATGGTTTTGGCCCCGA
1 TGCTCGGAGGGAACCGATTCCCCCCATAGGGGGAACCGATTCCCCCTAAACAGTTTTGGCCCCGA
*
676566 GATTTTCCAGAA
66 GATATTCCAGAA
*
676578 TGCTCGGAGGGAACCGATTCCCCCCATAGGGGGAACCGATTCCCCCTAAACAGTTTT-GCTCCGA
1 TGCTCGGAGGGAACCGATTCCCCCCATAGGGGGAACCGATTCCCCCTAAACAGTTTTGGCCCCGA
*
676642 GA-ATTCCAGTA
66 GATATTCCAGAA
* *
676653 TGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCC
1 TGCTCGGAGGGAACCGATTCCCCCCATAGGGGGAACCGATTCCCCC
676698 CTTGTACAAC
Statistics
Matches: 110, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
74 18 0.16
75 32 0.29
76 47 0.43
77 13 0.12
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (77 bp):
TGCTCGGAGGGAACCGATTCCCCCCATAGGGGGAACCGATTCCCCCTAAACAGTTTTGGCCCCGA
GATATTCCAGAA
Found at i:684000 original size:37 final size:37
Alignment explanation
Indices: 683959--684052 Score: 188
Period size: 37 Copynumber: 2.5 Consensus size: 37
683949 CAAACCTTAA
683959 AGATCATACAGATGAACTACATGATTACCTTTCTGGT
1 AGATCATACAGATGAACTACATGATTACCTTTCTGGT
683996 AGATCATACAGATGAACTACATGATTACCTTTCTGGT
1 AGATCATACAGATGAACTACATGATTACCTTTCTGGT
684033 AGATCATACAGATGAACTAC
1 AGATCATACAGATGAACTAC
684053 CATTCTCTTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (37 bp):
AGATCATACAGATGAACTACATGATTACCTTTCTGGT
Found at i:686994 original size:16 final size:16
Alignment explanation
Indices: 686973--687013 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
686963 AAAACGGCGT
686973 GACCGGTTAAAATTTA
1 GACCGGTTAAAATTTA
686989 GACCGGTTAAAATTTA
1 GACCGGTTAAAATTTA
687005 GACCGGTTA
1 GACCGGTTA
687014 TGTTATATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (16 bp):
GACCGGTTAAAATTTA
Found at i:687106 original size:23 final size:23
Alignment explanation
Indices: 687059--687108 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
687049 AATAACATAT
**
687059 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
687082 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
687105 TAGG
1 TAGG
687109 CATTTAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:691915 original size:199 final size:200
Alignment explanation
Indices: 691272--692607 Score: 1425
Period size: 199 Copynumber: 6.7 Consensus size: 200
691262 ATAAATTTCA
* * * * * * * *
691272 ACCGGTTACATTGTAAATTGACCTATTACATTATAATTTTTGGTCTCGATGTATTTGGGGTCGAT
1 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGAC
* * * * * *** *
691337 ACTTTTTATAAATGTATCGAAACTTTATGCGTAG-ACATCGG--TTGGCATTA-ACTATGGAC-A
66 ACTTGTTATAAATGTATCGACACTTTGT-TGT-GCAC-TTGGTTTTTAAAATACACTATGGACAA
* ** *** * * * * * *
691397 TAAGTATCGACACAAATGTA-AAAAGTATCGATACATTATGTATACCTATTTGCTCATAAAACTG
128 AAAGTATCGACACTTAT-TAGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACCG
* *
691461 GTAAATTTAA
191 GTATATTTAG
** * * * * * * * * * *
691471 ACCAATTACATTGTAAAGTGACCTATTACATTATAATTTTTGGTCTCTATGTATTTGGGGTCGAT
1 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGAC
* * * *** * * *
691536 ACTT-TTAATAAATGTATCGACACTTTAAG-CGTGCACATAG-TTTGGGAATTCATTATGGATAA
66 ACTTGTT-ATAAATGTATCGACACTTT--GTTGTGCACTTGGTTTTTAAAATACACTATGGACAA
* * * ** * * * *
691598 AAAGTATCGACA-TAAATAAATAAAGTGTCGATACATTATTTAAACTTATTTTCTCATAAAACCG
128 AAAGTATCGACACTTATTAGAT-TTGTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACCG
* *
691662 GTAAATTTAA
191 GTATATTTAG
* *
691672 ACCGGTTACATTGTAAATTTACCTATTACATTATAATAATGGGTTTCGATGTTTTTGGGATCGAC
1 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGAC
* *
691737 ACTTGTTATAAATGTATCGAAACTTTGTTGTGCACTTGGTTTTTAAAATACACTCTGGACAAAAA
66 ACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACTATGGACAAAAA
*
691802 GTATCGACACTTATTAGATTTGTGT-GATACTTTATGTATACTTGTTTTCTCATAAATCGGTATA
131 GTATCGACACTTATTAGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTATA
691866 TTTAG
196 TTTAG
*
691871 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGAATCGAC
1 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGAC
* *
691936 ACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATGCACTCTGGACAAAAA
66 ACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACTATGGACAAAAA
* **
692001 GTATCGACACTTGTTTCATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTATA
131 GTATCGACACTTATTAGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTATA
692066 TTTAG
196 TTTAG
*
692071 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGATCGA-
1 ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGAC
* *
692135 AATTATTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACGT-TGGACAAAA
66 ACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATACAC-TATGGACAAAA
* *
692199 AGTATCGACACTTATT-GTATTTGTGTCGATACTTTATGTATA-TCTGTTTTCTCAAAAACCTGT
130 AGTATCGACACTTATTAG-ATTTGTGTCGATACTTTATGTATACT-TGTTTTCTCATAAACCGGT
692262 ATATTTAG
193 ATATTTAG
** * * * * *
692270 GTCGGTTATATTGTTATTTTACCTATTACATTAT-ATCTATGTGTTTCGATGTTTTTAGTATCGA
1 ACCGGTTACATTGTTAATTTACCTATTACATTATAAT-TATGGGTTTCGATGTTTTTGGGATCGA
* *
692334 CACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTATAAAATACACGATGGACAAAA
65 CACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACTATGGACAAAA
* * *
692399 AGTATCGACACTTATT-GTATTTGTGTCGATACTTTATGTATA-TATGTTTTCTCAAAAACTGAT
130 AGTATCGACACTTATTAG-ATTTGTGTCGATACTTTATGTATACT-TGTTTTCTCATAAACCGGT
692462 ATATTTAG
193 ATATTTAG
* * ** * *
692470 GCCGGTTACATTGTTATTTTACCTATTACATTAT-ATCTATGTCTTTCGATGTTTTTAGTATCGA
1 ACCGGTTACATTGTTAATTTACCTATTACATTATAAT-TATGGGTTTCGATGTTTTTGGGATCGA
* * * ** * *
692534 CACTTGTTATAAATGTCTTGACACTTTTTTCGTGCACTTGG-TTTGGAAATACATTATGGACAAC
65 CACTTGTTATAAATGTATCGACACTTTGTT-GTGCACTTGGTTTTTAAAATACACTATGGACAAA
*
692598 ATGTATCGAC
129 AAGTATCGAC
692608 GCGAATGAAT
Statistics
Matches: 1011, Mismatches: 105, Indels: 41
0.87 0.09 0.04
Matches are distributed among these distances:
198 7 0.01
199 434 0.43
200 388 0.38
201 174 0.17
202 8 0.01
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (200 bp):
ACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGAC
ACTTGTTATAAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACTATGGACAAAAA
GTATCGACACTTATTAGATTTGTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTATA
TTTAG
Found at i:692240 original size:399 final size:399
Alignment explanation
Indices: 691622--692577 Score: 1415
Period size: 399 Copynumber: 2.4 Consensus size: 399
691612 AATAAATAAA
* * * * * * *
691622 GTGTCGATACATTATTTAAACTTATTTTCTCATAAAACCGGTAAATTTAAACCGGTTACATTGTA
1 GTGTCGATACTTTATGTATACTTGTTTTCTCAT-AAACCGGTATATTTAGACCGGTTACATTGTT
* *
691687 AATTTACCTATTACATTATAATAATGGGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGT
65 AATTTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGT
*
691752 ATCGAAACTTTGTTGTGCACTTGGTTTTTAAAATACACTCTGGACAAAAAGTATCGACACTTATT
130 ATCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACTCTGGACAAAAAGTATCGACACTTATT
* *
691817 AGATTTGTGTGATACTTTATGTATA-CTTGTTTTCTCATAAATCGGTATATTTAGACCGGTTACA
195 AGATTTGTGTGATACTTTATGTATATC-TGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACA
*
691881 TTGTTAATTTACCTATTACATTATAAT-TATGGGTTTCGATGTTTTTGGAATCGACACTTGTTAT
259 TTGTTAATTTACCTATTACATTAT-ATCTATGGGTTTCGATGTTTTTAGAATCGACACTTGTTAT
* * **
691945 AAATGTATCGACACTTTGTTGTGCACTTGGTTTTTAAAATGCACTCTGGACAAAAAGTATCGACA
323 AAATGTATCGACACTTTGTTGTGCACTTGGTTTATAAAATACACGATGGACAAAAAGTATCGACA
*
692010 CTTGTT-TCATTT
388 CTTATTGT-ATTT
692022 GTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTATATTTAGACCGGTTACATTGTTA
1 GTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTATATTTAGACCGGTTACATTGTTA
* *
692087 ATTTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGATCGA-AATTATTATAAATGTA
66 ATTTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTA
692151 TCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACGT-TGGACAAAAAGTATCGACACTTATT
131 TCGACACTTTGTTGTGCACTTGGTTTTTAAAATACAC-TCTGGACAAAAAGTATCGACACTTATT
* ** *
692215 -GTATTTGTGTCGATACTTTATGTATATCTGTTTTCTCAAAAACCTGTATATTTAGGTCGGTTAT
195 AG-ATTTGTGT-GATACTTTATGTATATCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTAC
* * *
692279 ATTGTTATTTTACCTATTACATTATATCTATGTGTTTCGATGTTTTTAGTATCGACACTTGTTAT
258 ATTGTTAATTTACCTATTACATTATATCTATGGGTTTCGATGTTTTTAGAATCGACACTTGTTAT
692344 AAATGTATCGACACTTTGTTGTGCACTTGGTTTATAAAATACACGATGGACAAAAAGTATCGACA
323 AAATGTATCGACACTTTGTTGTGCACTTGGTTTATAAAATACACGATGGACAAAAAGTATCGACA
692409 CTTATTGTATTT
388 CTTATTGTATTT
* * * *
692421 GTGTCGATACTTTATGTATA-TATGTTTTCTCAAAAACTGATATATTTAGGCCGGTTACATTGTT
1 GTGTCGATACTTTATGTATACT-TGTTTTCTCATAAACCGGTATATTTAGACCGGTTACATTGTT
* ** * *
692485 ATTTTACCTATTACATTAT-ATCTATGTCTTTCGATGTTTTTAGTATCGACACTTGTTATAAATG
65 AATTTACCTATTACATTATAAT-TATGAGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATG
* * *
692549 TCTTGACACTTTTTTCGTGCACTTGGTTT
129 TATCGACACTTTGTT-GTGCACTTGGTTT
692578 GGAAATACAT
Statistics
Matches: 505, Mismatches: 41, Indels: 19
0.89 0.07 0.03
Matches are distributed among these distances:
397 1 0.00
398 88 0.17
399 348 0.69
400 55 0.11
401 13 0.03
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.43
Consensus pattern (399 bp):
GTGTCGATACTTTATGTATACTTGTTTTCTCATAAACCGGTATATTTAGACCGGTTACATTGTTA
ATTTACCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTA
TCGACACTTTGTTGTGCACTTGGTTTTTAAAATACACTCTGGACAAAAAGTATCGACACTTATTA
GATTTGTGTGATACTTTATGTATATCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATT
GTTAATTTACCTATTACATTATATCTATGGGTTTCGATGTTTTTAGAATCGACACTTGTTATAAA
TGTATCGACACTTTGTTGTGCACTTGGTTTATAAAATACACGATGGACAAAAAGTATCGACACTT
ATTGTATTT
Found at i:692809 original size:12 final size:12
Alignment explanation
Indices: 692794--692834 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
692784 ATTTACATTT
692794 AAATTCAAACTC
1 AAATTCAAACTC
* * *
692806 AAATTGAAATTT
1 AAATTCAAACTC
692818 AAATTCAAACTC
1 AAATTCAAACTC
692830 AAATT
1 AAATT
692835 GGAATTTCAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (12 bp):
AAATTCAAACTC
Found at i:692809 original size:24 final size:24
Alignment explanation
Indices: 692790--692841 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
692780 TGAAATTTAC
692790 ATTTAAATTCAAACTCAAATTGAA
1 ATTTAAATTCAAACTCAAATTGAA
*
692814 ATTTAAATTCAAACTCAAATTGGA
1 ATTTAAATTCAAACTCAAATTGAA
692838 ATTT
1 ATTT
692842 CAGTATCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.37
Consensus pattern (24 bp):
ATTTAAATTCAAACTCAAATTGAA
Found at i:693167 original size:182 final size:181
Alignment explanation
Indices: 692850--693231 Score: 525
Period size: 182 Copynumber: 2.1 Consensus size: 181
692840 TTCAGTATCT
* **
692850 TTTTACCGATTTTGTCATTTTTAGACATCTTTTGTCATATTTTTACCTGTTATATTGTTATAGAT
1 TTTTACCG-TTTTGTCATTTTGAGACAGATTTTGTCATATTTTTACCTGTTATATTGTTATAGAT
* ** *
692915 TGATACATTTTTTTAAAGTATCGACACTTTATAGGCGCTATAACTTCTTTTCTTTTAAATTTCAA
65 CGATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTTCAA
* * *
692980 AAGTGTCGATACTTATATTAAAGTATCGACATTTTCAACATATCCGGTAG-T
130 AAGTGTCGATACTTATATTAAAGTATCGAAACTTTCAACATATCCGGTAGCG
* ** *
693031 TATTTACCTGTTTTGTCATTTTGAGACCGATTTTGTCATATTTTTAGTTGTTATATTGTTATGGA
1 T-TTTACC-GTTTTGTCATTTTGAGACAGATTTTGTCATATTTTTACCTGTTATATTGTTATAGA
* * *
693096 TCGATACATTTTCATAAATTGTCGACACTTTTTAGGCGCTATAACTTCTTCTCTTTTAAA-TTCA
64 TCGATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTTCA
* * *
693160 GAAAGTGTCGATGCTTATATTAAATTATCGAAACTTTCAACATATCTGGTAGCG
129 -AAAGTGTCGATACTTATATTAAAGTATCGAAACTTTCAACATATCCGGTAGCG
693214 TTTTACCGGTTTTGTCAT
1 TTTTACC-GTTTTGTCAT
693232 ATTTTTACCT
Statistics
Matches: 176, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
181 5 0.03
182 169 0.96
183 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (181 bp):
TTTTACCGTTTTGTCATTTTGAGACAGATTTTGTCATATTTTTACCTGTTATATTGTTATAGATC
GATACATTTTCATAAAGTATCGACACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTTCAAA
AGTGTCGATACTTATATTAAAGTATCGAAACTTTCAACATATCCGGTAGCG
Found at i:693256 original size:162 final size:162
Alignment explanation
Indices: 693056--693393 Score: 486
Period size: 162 Copynumber: 2.1 Consensus size: 162
693046 TCATTTTGAG
* ** * *
693056 ACCGATTTTGTCATATTTTTAGTTGTTATATTGTTATGGATCGATACATTTTCAT-AAATTGTCG
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTT-ATAAAAGTATCG
**
693120 ACACTTTT-TAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGATGCTTATATTAA
65 ACA-TTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGATAATTATATTAA
* *
693183 ATTATCGAAACTTTCAACATATCTGGTAGCGT-TTT
128 AGTATCGAAACTTTCAACATATCTAGTAG-GTATTT
*
693218 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTAAAAGTATCGA
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTATAAAAGTATCGA
*
693283 CATTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTTTCGATAATTATATTAAAGT
66 CATTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAATTATATTAAAGT
* *
693348 ATCGACACTTTCAACATATCTAGTAGTTATTT
131 ATCGAAACTTTCAACATATCTAGTAGGTATTT
*
693380 ACCTGTTTTGTCAT
1 ACCGGTTTTGTCAT
693394 TTTGAGACCG
Statistics
Matches: 158, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
161 6 0.04
162 150 0.95
163 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (162 bp):
ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTATAAAAGTATCGA
CATTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAATTATATTAAAGT
ATCGAAACTTTCAACATATCTAGTAGGTATTT
Found at i:693506 original size:344 final size:344
Alignment explanation
Indices: 692879--693575 Score: 1198
Period size: 344 Copynumber: 2.0 Consensus size: 344
692869 TTTAGACATC
* *
692879 TTTTGTCATATTTTTACCTGTTATATTGTTATAGATTGATACATTTTTTTAAAGTATCGACACTT
1 TTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTTAAAAGTATCGACACTT
* * *
692944 TATAGGCGCTATAACTTCTTTTCTTTTAAATTTCAAAAGTGTCGATACTTATATTAAAGTATCGA
66 TATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAATTATATTAAAGTATCGA
* *
693009 CATTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGATTTTGTCATATTT
131 CACTTTCAACATATCCAGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGATTTTGTCATATTT
*
693074 TTAGTTGTTATATTGTTATGGATCGATACATTTTCATAAATTGTCGACACTTTTTAGGCGCTATA
196 TTAGCTGTTATATTGTTATGGATCGATACATTTTCATAAATTGTCGACACTTTTTAGGCGCTATA
*
693139 ACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATGCTTATATTAAATTATCGAAACTTTCAACATA
261 ACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGAAACTTTCAACATA
*
693204 TCTGGTAGCGTTTTACCGG
326 TCCGGTAGCGTTTTACCGG
* *
693223 TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTAAAAGTATCGACATTT
1 TTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTTAAAAGTATCGACACTT
*
693288 TATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTTTCGATAATTATATTAAAGTATCGA
66 TATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAATTATATTAAAGTATCGA
* *
693353 CACTTTCAACATATCTAGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATATTT
131 CACTTTCAACATATCCAGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGATTTTGTCATATTT
* * * *
693418 TTAGCTGTTATATTGTTGTGGATTGATACATTTTCATAAAGTT-TCGATACTTTTTAGGTGCTAT
196 TTAGCTGTTATATTGTTATGGATCGATACATTTTCATAAA-TTGTCGACACTTTTTAGGCGCTAT
*
693482 AACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGACACTTTCAACAT
260 AACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGAAACTTTCAACAT
693547 ATCCGGTAGCGTTTTACCGG
325 ATCCGGTAGCGTTTTACCGG
693567 TTTTGTCAT
1 TTTTGTCAT
693576 TTTGAGATCA
Statistics
Matches: 332, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
344 330 0.99
345 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.45
Consensus pattern (344 bp):
TTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTTAAAAGTATCGACACTT
TATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAATTATATTAAAGTATCGA
CACTTTCAACATATCCAGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGATTTTGTCATATTT
TTAGCTGTTATATTGTTATGGATCGATACATTTTCATAAATTGTCGACACTTTTTAGGCGCTATA
ACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGAAACTTTCAACATA
TCCGGTAGCGTTTTACCGG
Found at i:693525 original size:182 final size:182
Alignment explanation
Indices: 693218--693633 Score: 615
Period size: 182 Copynumber: 2.3 Consensus size: 182
693208 GTAGCGTTTT
*
693218 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTAAAAGTATCGA
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTATAAAAGTATCGA
*
693283 CATTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTTTCGATAATTATATTAAAGT
66 CATTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAATTATATTAAAGT
* * *
693348 ATCGACACTTTCAACATATCTAGTAG-TTATTTACCTGTTTTGTCATTTTGAG
131 ATCGACACTTTCAACATATCCAGTAGCGT-TTTACCGGTTTTGTCATTTTGAG
* * * *
693400 ACCGGTTTTGTCATATTTTTAGCTGTTATATTGTTGTGGATTGATACATTTTCAT-AAAGTTTCG
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTT-ATAAAAGTATCG
* * *
693464 ATACTTTT-TAGGTGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGATACTTATATTAA
65 ACA-TTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGATAATTATATTAA
* *
693527 ATTATCGACACTTTCAACATATCCGGTAGCGTTTTACCGGTTTTGTCATTTTGAG
128 AGTATCGACACTTTCAACATATCCAGTAGCGTTTTACCGGTTTTGTCATTTTGAG
* * *
693582 ATCAGTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTT
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTT
693634 TCATTTGTAT
Statistics
Matches: 210, Mismatches: 20, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
181 2 0.01
182 202 0.96
183 6 0.03
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.45
Consensus pattern (182 bp):
ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTATAAAAGTATCGA
CATTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATAATTATATTAAAGT
ATCGACACTTTCAACATATCCAGTAGCGTTTTACCGGTTTTGTCATTTTGAG
Found at i:694009 original size:19 final size:20
Alignment explanation
Indices: 693973--694010 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
693963 TGACTTTATA
*
693973 AAAATAAAAAAATTTATTTT
1 AAAATAAAAAAATATATTTT
693993 AAAATAAAAAAA-ATATTT
1 AAAATAAAAAAATATATTT
694011 ATTAAAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAATAAAAAAATATATTTT
Found at i:694015 original size:21 final size:19
Alignment explanation
Indices: 693967--694017 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
693957 GTTAATTGAC
*
693967 TTTATAAAAATAAAAAAAT
1 TTTATTAAAATAAAAAAAT
*
693986 TTATTTTAAAATAAAAAAAAT
1 TT-TATTAAAAT-AAAAAAAT
694007 ATTTATTAAAA
1 -TTTATTAAAA
694018 ACTCAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 7 0.27
21 15 0.58
22 2 0.08
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
TTTATTAAAATAAAAAAAT
Found at i:696650 original size:25 final size:25
Alignment explanation
Indices: 696596--696642 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
696586 TTCCTTTCTG
*
696596 CTTTGCCTTCGGTTTTTTTAGCTGG
1 CTTTGCCTTCGGTTTTTTTAGCTGC
* *
696621 ATTTGCCTT-GTTTTTTTTAGCT
1 CTTTGCCTTCGGTTTTTTTAGCT
696643 TTCCTTTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.06, C:0.17, G:0.19, T:0.57
Consensus pattern (25 bp):
CTTTGCCTTCGGTTTTTTTAGCTGC
Found at i:709927 original size:20 final size:19
Alignment explanation
Indices: 709904--709950 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
709894 CGATATACCA
*
709904 GGTAAAAATATGATAAAATC
1 GGTAAAAA-ATGATAAAACC
*
709924 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
709944 GGTAAAA
1 GGTAAAA
709951 CGTTACCGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:710046 original size:181 final size:183
Alignment explanation
Indices: 709692--710165 Score: 684
Period size: 182 Copynumber: 2.6 Consensus size: 183
709682 GATCCAAATT
* * *
709692 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTAT-AGAAATGAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCA-AAATGAT
* * * *
709756 AAAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTT
65 AAAACCGGTAAAGCGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTT
* * * *
709821 CGTGAATTTAAAAGAGAAGCAATTTTAAATCCTATAAAGTGTCGATACTTT-TA
130 CGTAAATTTAAAAGAGAAACAATTTTAAAGCCTATAAAGTGTCGATACTTTAAA
* *
709874 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAATCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * *
709939 AAACCGGTAAAACGTTACCGAATATATTAAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAGCGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* * ** *
710003 GTAAATTTAAAAGAGAAATAGTTTTAGCGCCTATAATGTGTCGATACTTTAAA
131 GTAAATTTAAAAGAGAAACAATTTTAAAGCCTATAAAGTGTCGATACTTTAAA
* *
710056 AAAAATATATCGATCCATAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
710121 AAACCGGTAAAGTGATACCGGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAGCGATACCGGATATATTAAAAGTGTCGATACTTT
710166 CGTAAGTACG
Statistics
Matches: 260, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
181 60 0.23
182 199 0.77
183 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (183 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAGCGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
GTAAATTTAAAAGAGAAACAATTTTAAAGCCTATAAAGTGTCGATACTTTAAA
Found at i:710109 original size:20 final size:19
Alignment explanation
Indices: 710086--710131 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
710076 CGATATAACA
710086 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
710106 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
710126 GGTAAA
1 GGTAAA
710132 GTGATACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 19 0.83
21 3 0.13
ACGTcount: A:0.52, C:0.11, G:0.17, T:0.20
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:712380 original size:21 final size:21
Alignment explanation
Indices: 712354--712418 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
712344 AAGACAATCA
*
712354 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
712375 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
712396 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
712417 AG
1 AG
712419 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:712493 original size:33 final size:33
Alignment explanation
Indices: 712451--712516 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
712441 AAATAGATGG
*
712451 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
712484 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
712517 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:714330 original size:19 final size:19
Alignment explanation
Indices: 714306--714351 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
714296 AATGTAGGGT
714306 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
714325 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
714344 TAATTTTG
1 TAATTTTG
714352 GATGTGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:714816 original size:200 final size:200
Alignment explanation
Indices: 714473--715849 Score: 2538
Period size: 200 Copynumber: 6.9 Consensus size: 200
714463 CAATATGGCC
* * *
714473 AACAGGGTGCAACAATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATAGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
* *
714538 CCAAAAGTATAATGTTATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGATTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
714603 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
131 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
714668 TGGAA
196 TGGAA
*
714673 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTTGATCCCAAAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
*
714738 CCAAAAGTATGATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
714803 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
131 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
714868 TGGAA
196 TGGAA
* *
714873 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAACGTGTCGATCCCAAAAACATCGAAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
*
714938 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACTGGTACAAGTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
715003 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAAAATGAA
131 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
715068 TGGAA
196 TGGAA
*
715073 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
* *
715138 CCAAAATTATAATGTAATATATAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
715203 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
131 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
715268 TGGAA
196 TGGAA
*
715273 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAGAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
715338 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* *
715403 GAATATGTCTAAATAATGTGTCGATACTTTTTTAGTTTGTGTTGATATTTTTGGTCCAGAATGAA
131 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
715468 TGGAA
196 TGGAA
*
715473 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAGAAACATCGAAAA
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
* *
715538 CCAAAAATATAATGTAATATGTAATTTTTCAATATAACCGGTACAAGTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
715603 GAATATGTCTAAATAATGTGTCGACACTTTTCTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
131 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
715668 TGGAA
196 TGGAA
*
715673 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAC
1 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
*
715738 CCAAATGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
66 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
*
715803 GAATATGTCCAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
715850 CTAATTTAAA
Statistics
Matches: 1141, Mismatches: 36, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
200 1141 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAAAA
CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
GAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
TGGAA
Found at i:717324 original size:6 final size:6
Alignment explanation
Indices: 717313--717400 Score: 68
Period size: 6 Copynumber: 14.7 Consensus size: 6
717303 CAAGCGGTCA
* * * * *
717313 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGATG ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * * * * *
717361 CTGACG ATGAAG ATGATG ACGATG ATGATG ATGATG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
717401 TGATCCAAAC
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 67 1.00
ACGTcount: A:0.38, C:0.08, G:0.33, T:0.22
Consensus pattern (6 bp):
ATGAAG
Found at i:717350 original size:3 final size:3
Alignment explanation
Indices: 717330--717404 Score: 78
Period size: 3 Copynumber: 25.0 Consensus size: 3
717320 TGAAGCTGAC
* * * * * * *
717330 GAT GAA GAT GAC GAT GAT GAT GAC GAT GAA GCT GAC GAT GAA GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
717378 GAC GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
717405 CCAAACAAGT
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.36, C:0.07, G:0.33, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:717365 original size:36 final size:36
Alignment explanation
Indices: 717313--717394 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
717303 CAAGCGGTCA
*
717313 ATGAAGATGAAGCTGACGATGAAGATGACGATGATG
1 ATGAAGATGAAGCTGACGATGAAGATGACGACGATG
* *
717349 ATGACGATGAAGCTGACGATGAAGATGATGACGATG
1 ATGAAGATGAAGCTGACGATGAAGATGACGACGATG
*
717385 ATGATGATGA
1 ATGAAGATGA
717395 TGATGATGAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.38, C:0.09, G:0.33, T:0.21
Consensus pattern (36 bp):
ATGAAGATGAAGCTGACGATGAAGATGACGACGATG
Found at i:717404 original size:12 final size:12
Alignment explanation
Indices: 717313--717400 Score: 95
Period size: 12 Copynumber: 7.3 Consensus size: 12
717303 CAAGCGGTCA
*
717313 ATGAAGATGAAG
1 ATGACGATGAAG
*
717325 CTGACGATGAAG
1 ATGACGATGAAG
*
717337 ATGACGATGATG
1 ATGACGATGAAG
717349 ATGACGATGAAG
1 ATGACGATGAAG
*
717361 CTGACGATGAAG
1 ATGACGATGAAG
* * *
717373 ATGATGACGATG
1 ATGACGATGAAG
* *
717385 ATGATGATGATG
1 ATGACGATGAAG
717397 ATGA
1 ATGA
717401 TGATCCAAAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 65 1.00
ACGTcount: A:0.38, C:0.08, G:0.33, T:0.22
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:718891 original size:183 final size:183
Alignment explanation
Indices: 718552--719178 Score: 1069
Period size: 183 Copynumber: 3.4 Consensus size: 183
718542 CAAAGTTTTC
* ** *
718552 ACACTTTTTAATATTGTGTTTGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
* * * *
718617 TAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGAATTATAATGCAATAGATAATTTTGTAA
66 AAAAAAGTGTCGACATT---TACACATCGGAACCCAGATTTATAATGCAATAGATAATTTTGTAA
718680 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
128 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
718736 ACACTTTCTAATATTGTATCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
718801 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGCAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGCAATAGATAATTTTGTAATAT
*
718866 AACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
718919 ACACTTTCTAATATTGTGTTGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
* * *
718984 AAGAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTATAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGCAATAGATAATTTTGTAATAT
*
719049 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTATACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
719102 ACACTTTCTAATATTGTGTCAGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
719167 AAAAAAGTGTCG
66 AAAAAAGTGTCG
719179 GTAATTTTAA
Statistics
Matches: 421, Mismatches: 20, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
183 347 0.82
184 71 0.17
186 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGCAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:721672 original size:25 final size:25
Alignment explanation
Indices: 721644--721708 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
721634 TTATCATTAA
721644 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
721669 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
721694 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
721709 TCTTTTGAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:722081 original size:23 final size:23
Alignment explanation
Indices: 722055--722127 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
722045 ATAGGTAAAA
* *
722055 ATATGATGTAATAAGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
722078 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
722101 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
722124 ATAT
1 ATAT
722128 TGTAAAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:722576 original size:23 final size:23
Alignment explanation
Indices: 722545--722617 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
722535 ATAGGTAAAA
*
722545 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
722568 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
722591 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
722614 ATAT
1 ATAT
722618 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:723064 original size:23 final size:23
Alignment explanation
Indices: 723034--723106 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
723024 ATAGGTAAAA
723034 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
723057 ATATAATGTAATAAGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
723080 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
723103 ATAT
1 ATAT
723107 TGTAAAGTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:723131 original size:46 final size:45
Alignment explanation
Indices: 723034--723131 Score: 117
Period size: 46 Copynumber: 2.1 Consensus size: 45
723024 ATAGGTAAAA
* *
723034 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATAT-ATGTAATAACTATCCTTT
* *
723080 ATATAATGTAATAGGTAGTGCTTATAT-TGTAAAGTATCTATCCTTT
1 ATATAATGTAATAGGTAGCGCTTATATATGT-AA-TAACTATCCTTT
*
723126 TTATAA
1 ATATAA
723132 AAGTGTCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
44 3 0.07
45 2 0.04
46 40 0.89
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (45 bp):
ATATAATGTAATAGGTAGCGCTTATATATGTAATAACTATCCTTT
Found at i:723235 original size:489 final size:490
Alignment explanation
Indices: 721708--723272 Score: 2925
Period size: 490 Copynumber: 3.2 Consensus size: 490
721698 AGGTATATAC
721708 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
721773 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
721838 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
721903 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
721968 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
*
722033 ACTTTCAATATAATAGGTAAAAATATGATGTAATAAGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* *
722098 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAATATCTATCATTTTTATAAAAGTGTCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
*
722163 ACTTTTTTCACTGTAGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
722198 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
722263 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
722328 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
* * ***
722393 ATTTTTTGTATAAATGAAATTATTAAATTAATATTGTAAGACTAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
722458 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATTGATCCTTTTTATAAAAAGTATGAAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
722523 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
* *
722588 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAGAGTATCCAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
722653 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
*
722688 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATAATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
722753 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
722818 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
722883 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
722947 AAAATTGAAATATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGAC
261 AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
* * *
723012 ACTTTCAATATAATAGGTAAAAATATAATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCG
326 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
*
723077 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTAT
391 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
723142 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
456 ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
723177 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
723242 GTTACGATATATATTATTATTAAATTAAAAA
66 GTTACGATATATATTATTATTAAATTAAAAA
723273 TTCTAAATAT
Statistics
Matches: 1042, Mismatches: 33, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
489 317 0.30
490 725 0.70
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (490 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAAATTGAAACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGAC
ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCG
TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCAT
ACTTTTTTCACTGTGGAAAACATTAATTTAAGGTT
Found at i:723495 original size:23 final size:23
Alignment explanation
Indices: 723464--723536 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
723454 ATAGGTAAAA
*
723464 ATATGATGTAATAGGTAACGCTT
1 ATATAATGTAATAGGTAACGCTT
*
723487 ATATAATGTAATAGGTAACGTTT
1 ATATAATGTAATAGGTAACGCTT
**
723510 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAACGCTT
723533 ATAT
1 ATAT
723537 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAACGCTT
Found at i:723646 original size:430 final size:430
Alignment explanation
Indices: 722827--723702 Score: 1628
Period size: 430 Copynumber: 2.0 Consensus size: 430
722817 CTTTGGTTAA
* *
722827 TATTGTTAAATT-TAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
*
722891 TGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
*
722956 ATATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
* *
723021 ATAATAGGTAAAAATATAATGTAATAGGTAGCGCTTATATAATGTAATAAGTATCGTTTATATAA
196 ATAATAGGTAAAAATATAATGTAATAGGTAACGCTTATATAATGTAATAAGTAACGTTTATATAA
* *
723086 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCTATACTTTTTTC
261 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTC
*
723151 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAATAATTA
723216 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
723256 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
1 TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
723321 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
66 TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
*
723386 ACATAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
131 ACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
* *
723451 ATAATAGGTAAAAATATGATGTAATAGGTAACGCTTATATAATGTAATAGGTAACGTTTATATAA
196 ATAATAGGTAAAAATATAATGTAATAGGTAACGCTTATATAATGTAATAAGTAACGTTTATATAA
723516 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTC
261 TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTC
*
723581 ACTGTGGAAAATATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAATAATTA
326 ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAATAATTA
723646 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
391 TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
723686 TATTATTAAATTAAAAA
1 TATTATTAAATTAAAAA
723703 CAATAAACAT
Statistics
Matches: 433, Mismatches: 13, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
429 11 0.03
430 422 0.97
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (430 bp):
TATTATTAAATTAAAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTG
TGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAA
ACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAAT
ATAATAGGTAAAAATATAATGTAATAGGTAACGCTTATATAATGTAATAAGTAACGTTTATATAA
TGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTC
ACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAATAATTA
TAGGCGTCTAATGATTTATTTTTTACGTTACGATATATAT
Found at i:726937 original size:30 final size:30
Alignment explanation
Indices: 726850--726939 Score: 117
Period size: 30 Copynumber: 3.0 Consensus size: 30
726840 CAGTGGGTGT
* * *
726850 TGCAGGTCTTGAAGCTGCACCCCCTGAAGA
1 TGCAGGTCTTGAACCTGAACCCCCTGAGGA
* * *
726880 TGTAGGCCTTGAACCTGGACCCCCTGAGGA
1 TGCAGGTCTTGAACCTGAACCCCCTGAGGA
*
726910 TGCAGGTCTTGAACCTGAACCACCTGAGGA
1 TGCAGGTCTTGAACCTGAACCCCCTGAGGA
726940 AGAGGGCCTG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (30 bp):
TGCAGGTCTTGAACCTGAACCCCCTGAGGA
Found at i:734726 original size:16 final size:16
Alignment explanation
Indices: 734707--734754 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
734697 AAGTAACCAT
734707 AACCAAAAACAACCCG
1 AACCAAAAACAACCCG
*
734723 AACCGAAAATCAACCCG
1 AACC-AAAAACAACCCG
* *
734740 AATCAAAAGCAACCC
1 AACCAAAAACAACCC
734755 AAATTTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 14 0.50
17 14 0.50
ACGTcount: A:0.52, C:0.35, G:0.08, T:0.04
Consensus pattern (16 bp):
AACCAAAAACAACCCG
Found at i:734839 original size:3 final size:3
Alignment explanation
Indices: 734831--734867 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
734821 AACAAATAAT
734831 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
734868 CTAATTTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:735648 original size:46 final size:45
Alignment explanation
Indices: 735577--735697 Score: 152
Period size: 46 Copynumber: 2.7 Consensus size: 45
735567 GACCTAAACA
* * * * *
735577 AAAACAAACCGAATTAACTCAAAAATCTAAAGGTTGATCTGAACC
1 AAAACAACCCGAATTGACCCGAAAATCTAAAGGTTGATCCGAACC
* * *
735622 AAAACTAACCCGACTTGACCCGAAAATCTAAAGGTTGATCCGATCG
1 AAAAC-AACCCGAATTGACCCGAAAATCTAAAGGTTGATCCGAACC
*
735668 AAATCAACCCGAATTGACCCGAAAATCTAA
1 AAAACAACCCGAATTGACCCGAAAATCTAA
735698 TGCTTGAACC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 29 0.45
46 36 0.55
ACGTcount: A:0.44, C:0.24, G:0.13, T:0.19
Consensus pattern (45 bp):
AAAACAACCCGAATTGACCCGAAAATCTAAAGGTTGATCCGAACC
Found at i:742208 original size:16 final size:16
Alignment explanation
Indices: 742159--742210 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
742149 TCTTTTATTC
742159 TATTTTTAGATGTTTAA
1 TATTTTTAGATGTTT-A
*
742176 TATTTTT-GAT-ATTA
1 TATTTTTAGATGTTTA
742190 TATTTTTAGATGTTTA
1 TATTTTTAGATGTTTA
742206 TATTT
1 TATTT
742211 AATAATATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 8 0.26
15 5 0.16
16 11 0.35
17 7 0.23
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (16 bp):
TATTTTTAGATGTTTA
Found at i:742219 original size:31 final size:31
Alignment explanation
Indices: 742154--742221 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
742144 CAATATCTTT
* * *
742154 TATTCTATTTTTAGATGTTTAATATTTTTGA
1 TATTATATTTTTAGATGTTTAATATTTATAA
742185 TATTATATTTTTAGATGTTT-ATATTTAATAA
1 TATTATATTTTTAGATGTTTAATATTT-ATAA
742216 TATTAT
1 TATTAT
742222 TTAAAATGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.31, C:0.01, G:0.07, T:0.60
Consensus pattern (31 bp):
TATTATATTTTTAGATGTTTAATATTTATAA
Found at i:746049 original size:60 final size:59
Alignment explanation
Indices: 745924--746049 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 59
745914 TTGGTCTTTG
* ** * *
745924 AACTTTTAAATATACTAATTTCACCCCAAACTATGATTTTCATTTTAGATTATTTCGTA
1 AACTTTTAAACATACTAATTTCACCCCAAACTATGATCATCATTTTAAATTATCTCGTA
* *
745983 AACTTTTAAACATTCTAATTTCACTCCTAAACTATGATCATC-TTTCTAAATTAATCTC-TA
1 AACTTTTAAACATACTAATTTCAC-CCCAAACTATGATCATCATTT-TAAATT-ATCTCGTA
746043 AACTTTT
1 AACTTTT
746050 GAATATTTCA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
59 25 0.44
60 28 0.49
61 4 0.07
ACGTcount: A:0.34, C:0.19, G:0.03, T:0.44
Consensus pattern (59 bp):
AACTTTTAAACATACTAATTTCACCCCAAACTATGATCATCATTTTAAATTATCTCGTA
Found at i:747112 original size:15 final size:15
Alignment explanation
Indices: 747094--747143 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
747084 AATCTGGATG
747094 TTATATATCTTGCTT
1 TTATATATCTTGCTT
* * * *
747109 TTATTAAATCTGGATG
1 TTA-TATATCTTGCTT
747125 TTATATATCTTGCTT
1 TTATATATCTTGCTT
747140 TTAT
1 TTAT
747144 TATAACTATA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.56
Consensus pattern (15 bp):
TTATATATCTTGCTT
Found at i:747121 original size:31 final size:31
Alignment explanation
Indices: 747083--747145 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
747073 CAATAACTCA
747083 AAATCTGGATGTTATATATCTTGCTTTTATT
1 AAATCTGGATGTTATATATCTTGCTTTTATT
747114 AAATCTGGATGTTATATATCTTGCTTTTATT
1 AAATCTGGATGTTATATATCTTGCTTTTATT
747145 A
1 A
747146 TAACTATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (31 bp):
AAATCTGGATGTTATATATCTTGCTTTTATT
Found at i:747147 original size:16 final size:16
Alignment explanation
Indices: 747097--747147 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
747087 CTGGATGTTA
747097 TATATCTTGCTTTTAT
1 TATATCTTGCTTTTAT
* * * *
747113 TAAATCTGGATGTTA-
1 TATATCTTGCTTTTAT
747128 TATATCTTGCTTTTAT
1 TATATCTTGCTTTTAT
747144 TATA
1 TATA
747148 ACTATAATCA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.55
Consensus pattern (16 bp):
TATATCTTGCTTTTAT
Found at i:755389 original size:35 final size:34
Alignment explanation
Indices: 755304--755390 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 34
755294 AATATAATTT
*
755304 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGG
*
755338 TAAATGATAA-ACAAATTACAATAAATGATATTAAATGG
1 TAAAT-ACAACA-AAATTACAAT-AA-G-TATTAAATGG
755376 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
755391 ACCAAAATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
34 6 0.13
35 20 0.44
36 4 0.09
37 4 0.09
38 11 0.24
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGG
Found at i:755423 original size:34 final size:33
Alignment explanation
Indices: 755381--755468 Score: 106
Period size: 33 Copynumber: 2.6 Consensus size: 33
755371 AATGGTAATA
*
755381 AACAAAATTAACCAAAATACATTAACAA-AAAGTCC
1 AACAAAATTAA-CAAAATAAATTAA-AATAAA-TCC
*
755416 AACAAATTTAACAAAATAAATTAAAATAAATCC
1 AACAAAATTAACAAAATAAATTAAAATAAATCC
**
755449 AACAAAATTAATGAAATAAA
1 AACAAAATTAACAAAATAAA
755469 GTAAGTATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
33 22 0.47
34 15 0.32
35 10 0.21
ACGTcount: A:0.64, C:0.14, G:0.02, T:0.20
Consensus pattern (33 bp):
AACAAAATTAACAAAATAAATTAAAATAAATCC
Found at i:757732 original size:26 final size:26
Alignment explanation
Indices: 757680--757750 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 26
757670 TTATATCTGC
*
757680 AAAAAAAATTAATTAAATAAAATATT
1 AAAAAAAATTAATTAAATAAAAAATT
**
757706 AAAAAAAATTAA-TACTTAAATAAATT
1 AAAAAAAATTAATTAAATAAA-AAATT
*
757732 AAAAATAAAAT-ATTAAATA
1 AAAAA-AAATTAATTAAATA
757751 TAATAAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
25 6 0.17
26 22 0.61
27 8 0.22
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (26 bp):
AAAAAAAATTAATTAAATAAAAAATT
Found at i:762765 original size:20 final size:19
Alignment explanation
Indices: 762725--762765 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
762715 ATCATCACAA
*
762725 AACAACGGAATCGTTGATC
1 AACAACGGAAACGTTGATC
*
762744 AACAACGGAAAACGTTGGTC
1 AACAACGG-AAACGTTGATC
762764 AA
1 AA
762766 AAGATCACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (19 bp):
AACAACGGAAACGTTGATC
Found at i:763063 original size:29 final size:29
Alignment explanation
Indices: 763021--763109 Score: 178
Period size: 29 Copynumber: 3.1 Consensus size: 29
763011 CTACAGTGGT
763021 CTTGGAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
763050 CTTGGAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
763079 CTTGGAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
763108 CT
1 CT
763110 GTGTGTACCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.13, C:0.31, G:0.37, T:0.18
Consensus pattern (29 bp):
CTTGGAGGTCGCCATGGCATCCGGGCGAC
Found at i:763181 original size:45 final size:45
Alignment explanation
Indices: 763117--763207 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
763107 CCTGTGTGTA
763117 CCATGCAATCAACATGGGACGTGGGAATGCATGGGGGAGGGGATG
1 CCATGCAATCAACATGGGACGTGGGAATGCATGGGGGAGGGGATG
763162 CCATGCAATCAACATGGGACGTGGGAATGCATGGGGGAGGGGATG
1 CCATGCAATCAACATGGGACGTGGGAATGCATGGGGGAGGGGATG
763207 C
1 C
763208 ATGGGGTGGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.16, G:0.42, T:0.15
Consensus pattern (45 bp):
CCATGCAATCAACATGGGACGTGGGAATGCATGGGGGAGGGGATG
Found at i:763218 original size:31 final size:33
Alignment explanation
Indices: 763172--763267 Score: 135
Period size: 31 Copynumber: 2.9 Consensus size: 33
763162 CCATGCAATC
763172 AACATGGGACGTGGGAATGCATGGGGGAGGGGAT
1 AACATGGGA-GTGGGAATGCATGGGGGAGGGGAT
*
763206 -GCATGGG-GTGGGAATGCATGGGGGA-GGGAT
1 AACATGGGAGTGGGAATGCATGGGGGAGGGGAT
763236 CAACATGGGATGTGGGAATGCATGGGGGAGGG
1 -AACATGGGA-GTGGGAATGCATGGGGGAGGG
763268 ACTACATGGC
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
30 5 0.09
31 18 0.33
32 6 0.11
33 6 0.11
34 18 0.33
35 2 0.04
ACGTcount: A:0.24, C:0.08, G:0.52, T:0.16
Consensus pattern (33 bp):
AACATGGGAGTGGGAATGCATGGGGGAGGGGAT
Found at i:763222 original size:15 final size:15
Alignment explanation
Indices: 763182--763228 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
763172 AACATGGGAC
763182 GTGGGAATGCATGGGG
1 GTGGGAATGCAT-GGG
* *
763198 GAGGGGATGCATGGG
1 GTGGGAATGCATGGG
763213 GTGGGAATGCATGGG
1 GTGGGAATGCATGGG
763228 G
1 G
763229 GAGGGATCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.19, C:0.06, G:0.57, T:0.17
Consensus pattern (15 bp):
GTGGGAATGCATGGG
Found at i:763256 original size:34 final size:33
Alignment explanation
Indices: 763169--763276 Score: 143
Period size: 34 Copynumber: 3.3 Consensus size: 33
763159 ATGCCATGCA
763169 ATCAACATGGGACGTGGGAATGCATGGGGGAGGGG
1 ATCAACATGGGA-GTGGGAATGCATGGGGGA-GGG
*
763204 AT--GCATGGG-GTGGGAATGCATGGGGGAGGG
1 ATCAACATGGGAGTGGGAATGCATGGGGGAGGG
763234 ATCAACATGGGATGTGGGAATGCATGGGGGAGGG
1 ATCAACATGGGA-GTGGGAATGCATGGGGGAGGG
*
763268 A-CTACATGG
1 ATCAACATGG
763277 CGACCTACAC
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
30 5 0.08
31 18 0.27
32 6 0.09
33 13 0.20
34 22 0.33
35 2 0.03
ACGTcount: A:0.25, C:0.10, G:0.48, T:0.17
Consensus pattern (33 bp):
ATCAACATGGGAGTGGGAATGCATGGGGGAGGG
Found at i:763276 original size:16 final size:16
Alignment explanation
Indices: 763184--763268 Score: 84
Period size: 16 Copynumber: 5.2 Consensus size: 16
763174 CATGGGACGT
763184 GGGAATGCATGGGGGA
1 GGGAATGCATGGGGGA
* *
763200 GGGGATGCAT-GGGGT
1 GGGAATGCATGGGGGA
763215 GGGAATGCATGGGGGA
1 GGGAATGCATGGGGGA
* * *
763231 GGG-ATCAACATGGGATGT
1 GGGAAT--GCATGGG-GGA
763249 GGGAATGCATGGGGGA
1 GGGAATGCATGGGGGA
763265 GGGA
1 GGGA
763269 CTACATGGCG
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
15 15 0.28
16 21 0.39
17 12 0.22
18 4 0.07
19 2 0.04
ACGTcount: A:0.24, C:0.07, G:0.54, T:0.15
Consensus pattern (16 bp):
GGGAATGCATGGGGGA
Found at i:763331 original size:15 final size:15
Alignment explanation
Indices: 763308--763376 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
763298 GCATGGCCAC
763308 CTCGCATGGCTCGCA
1 CTCGCATGGCTCGCA
* *
763323 CTCGTATGGCTCGTA
1 CTCGCATGGCTCGCA
*
763338 -T-GCATGG---GGA
1 CTCGCATGGCTCGCA
763348 CCTCGCATGGCTCGCA
1 -CTCGCATGGCTCGCA
*
763364 CTCGTATGGCTCG
1 CTCGCATGGCTCG
763377 TATGCATGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
10 2 0.05
12 1 0.02
13 11 0.26
14 1 0.02
15 25 0.60
16 2 0.05
ACGTcount: A:0.13, C:0.32, G:0.30, T:0.25
Consensus pattern (15 bp):
CTCGCATGGCTCGCA
Found at i:763344 original size:41 final size:41
Alignment explanation
Indices: 763297--763467 Score: 179
Period size: 41 Copynumber: 4.1 Consensus size: 41
763287 CCTATTCCAC
763297 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
1 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
**
763338 TGCATGGGGACCTCGCATGGCTCGCACTCGTATGGCTCGTA
1 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
** *** * *
763379 TGCATGGGGACCTCGCATGGGGAGAACGACCTCTCTAT---TC-CA
1 TGCATGGCCACCTCGCATGGCTCG--C-A-CTC-GTATGGCTCGTA
763421 CTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
1 -TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
763463 TGCAT
1 TGCAT
763468 CTATTCCACT
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
38 3 0.03
39 3 0.03
40 1 0.01
41 68 0.64
42 2 0.02
43 22 0.21
44 1 0.01
45 3 0.03
46 3 0.03
ACGTcount: A:0.16, C:0.32, G:0.28, T:0.24
Consensus pattern (41 bp):
TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
Found at i:763477 original size:55 final size:55
Alignment explanation
Indices: 763412--763522 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
763402 GAACGACCTC
763412 TCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCA
1 TCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCA
763467 TCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCA
1 TCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCA
763522 T
1 T
763523 GGGGACCTCG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.16, C:0.34, G:0.22, T:0.28
Consensus pattern (55 bp):
TCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCA
Found at i:763493 original size:139 final size:139
Alignment explanation
Indices: 763338--763606 Score: 520
Period size: 139 Copynumber: 1.9 Consensus size: 139
763328 ATGGCTCGTA
**
763338 TGCATGGGGACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCATGGGGACCTCGCATGGGGAG
1 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCATGGGGACCTCGCATGGGGAG
763403 AACGACCTCTCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCAT
66 AACGACCTCTCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCAT
763468 CTATTCCAC
131 CTATTCCAC
763477 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCATGGGGACCTCGCATGGGGAG
1 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCATGGGGACCTCGCATGGGGAG
763542 AACGACCTCTCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCAT
66 AACGACCTCTCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCAT
763607 GGGGAGAACC
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
139 128 1.00
ACGTcount: A:0.17, C:0.32, G:0.27, T:0.24
Consensus pattern (139 bp):
TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCATGGGGACCTCGCATGGGGAG
AACGACCTCTCTATTCCACTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTATGCAT
CTATTCCAC
Found at i:763504 original size:27 final size:27
Alignment explanation
Indices: 763419--763504 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
763409 CTCTCTATTC
763419 CACTGCATGGCCACCTCGCATGGCTCG
1 CACTGCATGGCCACCTCGCATGGCTCG
* * * * ***
763446 CACTCGTATGG-CTCGTATGCATCTATTC-
1 CACT-GCATGGCCACCT-CGCAT-GGCTCG
763474 CACTGCATGGCCACCTCGCATGGCTCG
1 CACTGCATGGCCACCTCGCATGGCTCG
763501 CACT
1 CACT
763505 CGTATGGCTC
Statistics
Matches: 40, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
26 2 0.05
27 20 0.50
28 16 0.40
29 2 0.05
ACGTcount: A:0.16, C:0.37, G:0.22, T:0.24
Consensus pattern (27 bp):
CACTGCATGGCCACCTCGCATGGCTCG
Found at i:763531 original size:41 final size:41
Alignment explanation
Indices: 763477--763608 Score: 119
Period size: 41 Copynumber: 3.2 Consensus size: 41
763467 TCTATTCCAC
763477 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
1 TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
** *** * *
763518 TGCATGGGGACCTCGCATGGGGAGAACGACCTCTCTAT---TC-CA
1 TGCATGGCCACCTCGCATGGCTCG--C-A-CTC-GTATGGCTCGTA
763560 CTGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
1 -TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
763602 TGCATGG
1 TGCATGG
763609 GGAGAACCAG
Statistics
Matches: 67, Mismatches: 14, Indels: 20
0.66 0.14 0.20
Matches are distributed among these distances:
38 3 0.04
39 3 0.04
40 1 0.01
41 29 0.43
42 2 0.03
43 22 0.33
44 1 0.01
45 3 0.04
46 3 0.04
ACGTcount: A:0.17, C:0.32, G:0.28, T:0.23
Consensus pattern (41 bp):
TGCATGGCCACCTCGCATGGCTCGCACTCGTATGGCTCGTA
Found at i:768564 original size:31 final size:31
Alignment explanation
Indices: 768529--768588 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
768519 AATAATAATT
* *
768529 ATATGATTTAAAACAAATCAAAAGCAAAAAA
1 ATATGATTGAAAACAAAGCAAAAGCAAAAAA
*
768560 ATATGATTGAAAACAAAGCAAAAGTAAAA
1 ATATGATTGAAAACAAAGCAAAAGCAAAA
768589 TAAAGGGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.63, C:0.08, G:0.10, T:0.18
Consensus pattern (31 bp):
ATATGATTGAAAACAAAGCAAAAGCAAAAAA
Found at i:769041 original size:22 final size:22
Alignment explanation
Indices: 769002--769043 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
768992 ATGTAATAGA
* *
769002 TTTAACAGATTTTAAAGAATAT
1 TTTAACAAATTTGAAAGAATAT
*
769024 TTTAACAAATTTGCAAGAAT
1 TTTAACAAATTTGAAAGAAT
769044 TTATAAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (22 bp):
TTTAACAAATTTGAAAGAATAT
Found at i:769948 original size:76 final size:76
Alignment explanation
Indices: 769822--769983 Score: 261
Period size: 76 Copynumber: 2.1 Consensus size: 76
769812 TGTGTCTTCA
* *
769822 ACGTGGGGACTAGCTTTGTTATATTTGGTAGCAGGAAGTTTGCAGCAAAATAAGGAATTCATGGG
1 ACGTGGGGACCAGCTTTGTTATATTTGGTAGCAGGAAGTTTGCAGCAAAATAAGGAAATCATGGG
769887 AAGAATAATGC
66 AAGAATAATGC
* * * *
769898 ACGTGGGGACCAGCTTTGTTATGTTTGGTAGCATGATGTTTGCAGGAAAATAAGGAAATCATGGG
1 ACGTGGGGACCAGCTTTGTTATATTTGGTAGCAGGAAGTTTGCAGCAAAATAAGGAAATCATGGG
769963 AAGAATAATGC
66 AAGAATAATGC
*
769974 ATGTGGGGAC
1 ACGTGGGGAC
769984 AGGAATGAGA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 79 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (76 bp):
ACGTGGGGACCAGCTTTGTTATATTTGGTAGCAGGAAGTTTGCAGCAAAATAAGGAAATCATGGG
AAGAATAATGC
Found at i:772810 original size:28 final size:26
Alignment explanation
Indices: 772772--772840 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 26
772762 ATTACTATTA
*
772772 TTAAATTATTAAACTTTAATCATTAAAG
1 TTAAATTATTAAA--TAAATCATTAAAG
*
772800 TTAAATAATTATTAATAAATCATTAAAG
1 TTAAATTATTA--AATAAATCATTAAAG
*
772828 TTTAATTATTAAA
1 TTAAATTATTAAA
772841 GTGAATTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
26 2 0.06
28 31 0.89
30 2 0.06
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.43
Consensus pattern (26 bp):
TTAAATTATTAAATAAATCATTAAAG
Found at i:772825 original size:42 final size:41
Alignment explanation
Indices: 772767--772873 Score: 133
Period size: 42 Copynumber: 2.6 Consensus size: 41
772757 ATATCATTAC
*
772767 TATTATTAAATTATTAAACTTTAATCATTAAAGTTAAATAAT
1 TATTATTAAATCATTAAA-TTTAATCATTAAAGTTAAATAAT
* * * * *
772809 TATTAATAAATCATTAAAGTTTAATTATTAAAGTGAATTATT
1 TATTATTAAATCATTAAA-TTTAATCATTAAAGTTAAATAAT
*
772851 TATTATTAAATCATTAAAGTTAA
1 TATTATTAAATCATTAAATTTAA
772874 ATAATTATTA
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
41 4 0.07
42 52 0.93
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.45
Consensus pattern (41 bp):
TATTATTAAATCATTAAATTTAATCATTAAAGTTAAATAAT
Found at i:772867 original size:70 final size:70
Alignment explanation
Indices: 772789--772950 Score: 279
Period size: 70 Copynumber: 2.3 Consensus size: 70
772779 ATTAAACTTT
* * **
772789 AATCATTAAAGTTAAATAATTATTAATAAATCATTAAAGTTTAATTATTAAAGTGAATTATTTAT
1 AATCATTAAAGTTAAATAATTATTAATAAATCATTAAAGTTAAATTATTAAAGTGAAGTAAATAT
772854 TATTA
66 TATTA
772859 AATCATTAAAGTTAAATAATTATTAATAAATCATTAAAGTTAAATTATTAAAGTGAAGTAAATAT
1 AATCATTAAAGTTAAATAATTATTAATAAATCATTAAAGTTAAATTATTAAAGTGAAGTAAATAT
772924 TATTA
66 TATTA
*
772929 AATCATTAAAGTTAAATCATTA
1 AATCATTAAAGTTAAATAATTA
772951 AAGTTAAGTA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 87 1.00
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (70 bp):
AATCATTAAAGTTAAATAATTATTAATAAATCATTAAAGTTAAATTATTAAAGTGAAGTAAATAT
TATTA
Found at i:772889 original size:84 final size:83
Alignment explanation
Indices: 772767--773062 Score: 218
Period size: 84 Copynumber: 3.5 Consensus size: 83
772757 ATATCATTAC
* * * *
772767 TATTATTAAATTATTAAACTTTAATCATTA--AAGTTAAATAATTATTAATAAATCATTAAAGTT
1 TATTATTAAATCATTAAAGTTAAATAATTATTAA--TAAATAATTATTAATAAATCATTAAAGTT
* *
772830 TAATTATTAAAGTGAATTATT
64 TAATTATT-AATTAAATTATT
* *
772851 TATTATTAAATCATTAAAGTTAAATAATTATTAATAAATCATTA--AAGTTAAATTATTAAAGTG
1 TATTATTAAATCATTAAAGTTAAATAATTATTAATAAATAATTATTAA--TAAATCATTAAAGT-
* * *
772914 AAGTAAATATT-ATTAAATCA-T
63 --TTAATTATTAATTAAATTATT
* * * *
772935 TA-AAGTTAAATCATTAAAGTTAAGTAATTATTATTAAAGTATTTAATT--TAAATCATTAAAGT
1 TATTA-TTAAATCATTAAAGTTAAATAATTATTAATAAA-TAATT-ATTAATAAATCATTAAAGT
*
772997 TAAATAATTATT-ATTAAAGTATT
63 T---TAATTATTAATTAAATTATT
* * *
773020 TAAT-TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTA
1 TATTATTAAATCATTAAAGTTAAATAATTATTAATAAATAATTA
773063 AATTTAAATG
Statistics
Matches: 170, Mismatches: 25, Indels: 36
0.74 0.11 0.16
Matches are distributed among these distances:
82 3 0.02
83 4 0.02
84 141 0.83
85 12 0.07
86 3 0.02
87 7 0.04
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (83 bp):
TATTATTAAATCATTAAAGTTAAATAATTATTAATAAATAATTATTAATAAATCATTAAAGTTTA
ATTATTAATTAAATTATT
Found at i:772902 original size:42 final size:42
Alignment explanation
Indices: 772856--773099 Score: 339
Period size: 42 Copynumber: 5.8 Consensus size: 42
772846 TTATTTATTA
* *
772856 TTAAATCATTAAAGTTAAATAATTATTAATAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAT
* * * * *
772898 TTAAATTATTAAAGTGAAGTAAATATTATTAAATCATTAAAG
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAT
* *
772940 TTAAATCATTAAAGTTAAGTAATTATTATTAAAGT-ATTTAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAA-TCATTAAAT
*
772982 TTAAATCATTAAAGTTAAATAATTATTATTAAAGT-ATTTAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAA-TCATTAAAT
773024 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAT
* * *
773066 TTAAATGATTAAATTTAAATAATAATTATTAAAT
1 TTAAATCATTAAAGTTAAATAATTATTATTAAAT
773100 ATATACTCGA
Statistics
Matches: 185, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
41 1 0.01
42 183 0.99
43 1 0.01
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (42 bp):
TTAAATCATTAAAGTTAAATAATTATTATTAAATCATTAAAT
Found at i:772908 original size:28 final size:29
Alignment explanation
Indices: 772835--773076 Score: 149
Period size: 28 Copynumber: 8.6 Consensus size: 29
772825 AAGTTTAATT
* * *
772835 ATTAAAGTGAATTATTTATT-ATTAAATC
1 ATTAAAGTTAAATAATTATTAATTAAATC
772863 ATTAAAGTTAAATAATTATTAA-TAAATC
1 ATTAAAGTTAAATAATTATTAATTAAATC
* * *
772891 ATTAAAGTTAAATTATTAAAGTGAAGTAAAT-
1 ATTAAAGTTAAATAATT--A-TTAATTAAATC
*
772922 ATT--A-TTAAATCATTA--AAGTTAAATC
1 ATTAAAGTTAAATAATTATTAA-TTAAATC
*
772947 ATTAAAGTTAAGTAATTATT-ATTAAAGT-
1 ATTAAAGTTAAATAATTATTAATTAAA-TC
* * * *
772975 ATTTAATTTAAATCATTA--AAGTTAAATA
1 ATTAAAGTTAAATAATTATTAA-TTAAATC
*
773003 ATTATTA-TTAAAGT-A-T-TTAATTTAAATC
1 ATTA-AAGTTAAA-TAATTATTAA-TTAAATC
773031 ATTAAAGTTAAATAATTATT-ATTAAATC
1 ATTAAAGTTAAATAATTATTAATTAAATC
* *
773059 ATTAAATTTAAATGATTA
1 ATTAAAGTTAAATAATTA
773077 AATTTAAATA
Statistics
Matches: 170, Mismatches: 20, Indels: 48
0.71 0.08 0.20
Matches are distributed among these distances:
23 2 0.01
24 5 0.03
25 3 0.02
26 1 0.01
27 6 0.04
28 131 0.77
29 8 0.05
30 3 0.02
31 6 0.04
32 5 0.03
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (29 bp):
ATTAAAGTTAAATAATTATTAATTAAATC
Found at i:773064 original size:8 final size:7
Alignment explanation
Indices: 772966--773101 Score: 72
Period size: 8 Copynumber: 19.4 Consensus size: 7
772956 AAGTAATTAT
772966 TATTAAA
1 TATTAAA
*
772973 GTATTTAA
1 -TATTAAA
772981 T-TTAAA
1 TATTAAA
772987 TCATTAAA
1 T-ATTAAA
*
772995 -GTTAAA
1 TATTAAA
*
773001 TAATT-AT
1 T-ATTAAA
773008 TATTAAA
1 TATTAAA
*
773015 GTATTTAA
1 -TATTAAA
773023 T-TTAAA
1 TATTAAA
773029 TCATTAAA
1 T-ATTAAA
*
773037 -GTTAAA
1 TATTAAA
*
773043 TAATT-AT
1 T-ATTAAA
773050 TATTAAA
1 TATTAAA
773057 TCATTAAA
1 T-ATTAAA
773065 T-TTAAA
1 TATTAAA
773071 TGATTAAA
1 T-ATTAAA
773079 T-TTAAA
1 TATTAAA
* *
773085 TAATAAT
1 TATTAAA
773092 TATTAAA
1 TATTAAA
773099 TAT
1 TAT
773102 ATACTCGAGT
Statistics
Matches: 97, Mismatches: 16, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
6 38 0.39
7 20 0.21
8 39 0.40
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (7 bp):
TATTAAA
Found at i:773067 original size:84 final size:83
Alignment explanation
Indices: 772815--773101 Score: 344
Period size: 84 Copynumber: 3.4 Consensus size: 83
772805 TAATTATTAA
* * * * * *
772815 TAAATCATTAAAGTTTAATTATTA-AAGTGAATTATTTATTATTAAATCATTAAAGTTAAATAAT
1 TAAATCATTAAAGTTAAATAATTATTA-TTAAATATTTAAT-TTAAATCATTAAAGTTAAATAAT
* *
772879 TATTAATAAATCATTAAAGT
64 TATTATTAAATCATTAAATT
* * * * * * *
772899 TAAATTATTAAAGTGAAGTAAATATTATTAAATCATTAAAGTTAAATCATTAAAGTTAAGTAATT
1 TAAATCATTAAAGTTAAATAATTATTATTAAAT-ATTTAATTTAAATCATTAAAGTTAAATAATT
*
772964 ATTATTAAAGT-ATTTAATT
65 ATTATTAAA-TCATTAAATT
772983 TAAATCATTAAAGTTAAATAATTATTATTAAAGTATTTAATTTAAATCATTAAAGTTAAATAATT
1 TAAATCATTAAAGTTAAATAATTATTATTAAA-TATTTAATTTAAATCATTAAAGTTAAATAATT
773048 ATTATTAAATCATTAAATT
65 ATTATTAAATCATTAAATT
* * *
773067 TAAATGATTAAATTTAAATAATAATTATTAAATAT
1 TAAATCATTAAAGTTAAATAATTATTATTAAATAT
773102 ATACTCGAGT
Statistics
Matches: 171, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
83 4 0.02
84 160 0.94
85 7 0.04
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (83 bp):
TAAATCATTAAAGTTAAATAATTATTATTAAATATTTAATTTAAATCATTAAAGTTAAATAATTA
TTATTAAATCATTAAATT
Found at i:773097 original size:14 final size:13
Alignment explanation
Indices: 772979--773100 Score: 55
Period size: 14 Copynumber: 8.8 Consensus size: 13
772969 TAAAGTATTT
*
772979 AATTTAAATCATTA
1 AATTTAAAT-AATA
* *
772993 AAGTTAAATAATT
1 AATTTAAATAATA
* * *
773006 ATTATTAAAGTATTT
1 AAT-TTAAA-TAATA
*
773021 AATTTAAATCATTA
1 AATTTAAAT-AATA
* *
773035 AAGTTAAATAATT
1 AATTTAAATAATA
* *
773048 ATTATTAAATCATTA
1 AAT-TTAAAT-AATA
*
773063 AATTTAAATGATTA
1 AATTTAAAT-AATA
773077 AATTTAAATAATA
1 AATTTAAATAATA
*
773090 ATTATTAAATA
1 AAT-TTAAATA
773101 TATACTCGAG
Statistics
Matches: 83, Mismatches: 19, Indels: 12
0.73 0.17 0.11
Matches are distributed among these distances:
13 12 0.14
14 61 0.73
15 10 0.12
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.43
Consensus pattern (13 bp):
AATTTAAATAATA
Found at i:773097 original size:28 final size:29
Alignment explanation
Indices: 772982--773099 Score: 79
Period size: 28 Copynumber: 4.2 Consensus size: 29
772972 AGTATTTAAT
* * *
772982 TTAAATCATTAAAGTTAAAT-AATTATTA
1 TTAAATGATTAAATTTAAATCAATAATTA
* *
773010 TTAAA-GTATTTAATTTAAATCATTAA--A
1 TTAAATG-ATTAAATTTAAATCAATAATTA
* * * *
773037 GTTAAATAATT-ATTATTAAATCATTAAAT-
1 -TTAAATGATTAAAT-TTAAATCAATAATTA
773066 TTAAATGATTAAATTTAAAT-AATAATTA
1 TTAAATGATTAAATTTAAATCAATAATTA
773094 TTAAAT
1 TTAAAT
773100 ATATACTCGA
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
27 8 0.11
28 57 0.81
29 5 0.07
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (29 bp):
TTAAATGATTAAATTTAAATCAATAATTA
Found at i:773098 original size:70 final size:70
Alignment explanation
Indices: 772767--773099 Score: 206
Period size: 70 Copynumber: 4.8 Consensus size: 70
772757 ATATCATTAC
* * * *
772767 TATTATTAAATTATTAAACTTT-AATCATTAAAGTTAAATAATTATTAATAAATCATTAAAGTTT
1 TATTATTAAATCATTAAA-TTTAAATCATTAAAGTTAAATAATAATTATTAAATCATTAAAGTTA
*
772831 AATTAT
65 AATAAT
* * * * * * * *
772837 TA-AAGTGAATTATTTATTATTAAATCATTAAAGTTAAATAATTATTAATAAATCATTAAAGTTA
1 TATTATTAAATCATTAAAT-TTAAATCATTAAAGTTAAATAATAATTATTAAATCATTAAAGTTA
*
772901 AATTAT
65 AATAAT
* * * * *
772907 TAAAGTGAAGTAAAT-ATT--A-TTAAATCATTAAAGTTAAATCATTAA--AGTTAAGTAATTAT
1 T--A-T-TATTAAATCATTAAATTTAAATCATTAAAGTTAAAT-AATAATTA-TTAAATCATTA-
* *
772966 TA-TTAAAGTATT
59 AAGTTAAA-TAAT
* * * * *
772978 TAAT-TTAAATCATTAAAGTTAAATAATTATTA-TTAAAGTATTTAA-T-TTAAATCATTAAAGT
1 TATTATTAAATCATTAAATTTAAATCATTA-AAGTTAAA-TA-ATAATTATTAAATCATTAAAGT
773039 TAAATAAT
63 TAAATAAT
* *
773047 TATTATTAAATCATTAAATTTAAATGATTAAATTTAAATAATAATTATTAAAT
1 TATTATTAAATCATTAAATTTAAATCATTAAAGTTAAATAATAATTATTAAAT
773100 ATATACTCGA
Statistics
Matches: 209, Mismatches: 30, Indels: 48
0.73 0.10 0.17
Matches are distributed among these distances:
66 5 0.02
67 3 0.01
68 4 0.02
69 26 0.12
70 147 0.70
71 13 0.06
72 1 0.00
74 3 0.01
75 7 0.03
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (70 bp):
TATTATTAAATCATTAAATTTAAATCATTAAAGTTAAATAATAATTATTAAATCATTAAAGTTAA
ATAAT
Found at i:776470 original size:76 final size:76
Alignment explanation
Indices: 776337--776498 Score: 254
Period size: 76 Copynumber: 2.1 Consensus size: 76
776327 TCTCATTCTC
* *
776337 GTCCCCACGTGTATTATTCTTCCCATGATTTCCTTATTTTCCTGCAAACATCATGCTACCAAACA
1 GTCCCCACGTGCATTATTCTTCCCATGAATTCCTTATTTTCCTGCAAACATCATGCTACCAAACA
776402 TAACAAAGCT-
66 TAACAAAGCTA
** * *
776412 GATCCCCACGTGCATTATTCTTCCCATGAATTCCTTATTTTGGTGCAAACTTCCTGCTACCAAAC
1 G-TCCCCACGTGCATTATTCTTCCCATGAATTCCTTATTTTCCTGCAAACATCATGCTACCAAAC
776477 ATAACAAAGCTA
65 ATAACAAAGCTA
776489 GTCCCCACGT
1 GTCCCCACGT
776499 TGAAGACACA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
75 1 0.01
76 77 0.97
77 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.31
Consensus pattern (76 bp):
GTCCCCACGTGCATTATTCTTCCCATGAATTCCTTATTTTCCTGCAAACATCATGCTACCAAACA
TAACAAAGCTA
Found at i:792351 original size:26 final size:26
Alignment explanation
Indices: 792313--792362 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
792303 TTTTAAACAC
*
792313 TAATAATTGTATTAAATTCATTTTTA
1 TAATAATTATATTAAATTCATTTTTA
792339 TAATAATTATATTAAATTCATTTT
1 TAATAATTATATTAAATTCATTTT
792363 ATATTTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (26 bp):
TAATAATTATATTAAATTCATTTTTA
Found at i:795000 original size:25 final size:25
Alignment explanation
Indices: 794972--795049 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 25
794962 TAATTTAATG
794972 ATTTTGATTAAACTATCCTTAAATT
1 ATTTTGATTAAACTATCCTTAAATT
* ** * ** * *
794997 ATTTTCA-TCCA-TTTAATTCAATG
1 ATTTTGATTAAACTATCCTTAAATT
795020 ATTTTGATTAAACTATCCTTAAATT
1 ATTTTGATTAAACTATCCTTAAATT
795045 ATTTT
1 ATTTT
795050 CATCAAATCG
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
23 13 0.37
24 4 0.11
25 18 0.51
ACGTcount: A:0.33, C:0.13, G:0.04, T:0.50
Consensus pattern (25 bp):
ATTTTGATTAAACTATCCTTAAATT
Found at i:795011 original size:48 final size:48
Alignment explanation
Indices: 794958--795053 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
794948 CACAAACCAA
*
794958 CATTTAATTTAATGATTTTGATTAAACTATCCTTAAATTATTTTCATC
1 CATTTAATTCAATGATTTTGATTAAACTATCCTTAAATTATTTTCATC
795006 CATTTAATTCAATGATTTTGATTAAACTATCCTTAAATTATTTTCATC
1 CATTTAATTCAATGATTTTGATTAAACTATCCTTAAATTATTTTCATC
795054 AAATCGATCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.33, C:0.14, G:0.04, T:0.49
Consensus pattern (48 bp):
CATTTAATTCAATGATTTTGATTAAACTATCCTTAAATTATTTTCATC
Found at i:796373 original size:26 final size:26
Alignment explanation
Indices: 796344--796423 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
796334 TTCTTTCATC
796344 GGGAGAAATGCGAACTTAAGTGGGGT
1 GGGAGAAATGCGAACTTAAGTGGGGT
796370 GGGAGAAATGCGAACTTAAGTGGGGT
1 GGGAGAAATGCGAACTTAAGTGGGGT
**
796396 GGGAGAAATGCGAACTTGTGTGGGGT
1 GGGAGAAATGCGAACTTAAGTGGGGT
796422 GG
1 GG
796424 ATTTGACAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.07, G:0.45, T:0.20
Consensus pattern (26 bp):
GGGAGAAATGCGAACTTAAGTGGGGT
Found at i:801793 original size:4 final size:4
Alignment explanation
Indices: 801786--801811 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
801776 CTTACTTAGC
801786 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
801812 TGAAAGAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:804036 original size:73 final size:70
Alignment explanation
Indices: 803887--804022 Score: 204
Period size: 73 Copynumber: 1.9 Consensus size: 70
803877 GAGTTGTAAA
* *
803887 ATACGACTTGTCAATTCGAATAACTTGAAATTTTTTGACTCGACTCGACTTGATCGAATGCTCAC
1 ATACGACTCGTCAATTCGAATAACTTGAAAATTTTTGACTCGACT--AC-TGATCGAATGCTCAC
803952 CCCTACGC
63 CCCTACGC
*
803960 ATACGTCTCGTCAATTCGAATAACTTGAAAATTTTTGACTCGACT-C-GATCGAATGCTCACCCC
1 ATACGACTCGTCAATTCGAATAACTTGAAAATTTTTGACTCGACTACTGATCGAATGCTCACCCC
804023 ATGCATGTAC
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
68 17 0.28
70 1 0.02
73 42 0.70
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (70 bp):
ATACGACTCGTCAATTCGAATAACTTGAAAATTTTTGACTCGACTACTGATCGAATGCTCACCCC
TACGC
Found at i:804707 original size:11 final size:11
Alignment explanation
Indices: 804691--804715 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
804681 TCGAGTTATG
804691 AGGTTTGTCTT
1 AGGTTTGTCTT
804702 AGGTTTGTCTT
1 AGGTTTGTCTT
804713 AGG
1 AGG
804716 AATGTAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.12, C:0.08, G:0.32, T:0.48
Consensus pattern (11 bp):
AGGTTTGTCTT
Done.