Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008339.1 Hibiscus syriacus cultivar Beakdansim tig00111061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1048908
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 7
Found at i:1952 original size:4 final size:4
Alignment explanation
Indices: 1943--1991 Score: 98
Period size: 4 Copynumber: 12.2 Consensus size: 4
1933 TACACTGTAA
1943 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
1991 T
1 T
1992 TTCCTCCTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:2526 original size:13 final size:13
Alignment explanation
Indices: 2508--2532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2498 AATAACATAA
2508 AAAATATTTAATT
1 AAAATATTTAATT
2521 AAAATATTTAAT
1 AAAATATTTAAT
2533 ATTTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAATATTTAATT
Found at i:7661 original size:29 final size:29
Alignment explanation
Indices: 7628--7686 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
7618 ATTATTTATG
7628 TGATAATTTTTTAATAATGAAATGATATT
1 TGATAATTTTTTAATAATGAAATGATATT
7657 TGATAATTTTTTAATAATGAAATGATATT
1 TGATAATTTTTTAATAATGAAATGATATT
7686 T
1 T
7687 TTATAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (29 bp):
TGATAATTTTTTAATAATGAAATGATATT
Found at i:17632 original size:16 final size:16
Alignment explanation
Indices: 17607--17640 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17597 TAAGATTTGA
*
17607 CTAAAAAGTGTTTTAG
1 CTAAAAAGTGTTCTAG
*
17623 CTAAATAGTGTTCTAG
1 CTAAAAAGTGTTCTAG
17639 CT
1 CT
17641 CTTTTATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (16 bp):
CTAAAAAGTGTTCTAG
Found at i:32124 original size:5 final size:5
Alignment explanation
Indices: 32114--32140 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
32104 TTTAGTAAAA
32114 AACCG AACCG AACCG AACCG AACCG AA
1 AACCG AACCG AACCG AACCG AACCG AA
32141 TACACCCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.44, C:0.37, G:0.19, T:0.00
Consensus pattern (5 bp):
AACCG
Found at i:37674 original size:3 final size:3
Alignment explanation
Indices: 37668--37748 Score: 135
Period size: 3 Copynumber: 27.0 Consensus size: 3
37658 CATATATGAT
* * *
37668 TTA TTA TTA TTA TTA CTA TTA TTA TCA TTA TTA TTA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37716 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37749 CTACTGCGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:42416 original size:199 final size:194
Alignment explanation
Indices: 41827--42416 Score: 684
Period size: 199 Copynumber: 3.0 Consensus size: 194
41817 ACCTAAATAT
* * *
41827 GTGTCGATAC-TTTTTCTAAAAGTATCG-GCCCAAAAAATATCGAAACCAATAATTATAATGTAA
1 GTGTCGATACATTTAT-TAAAAGTATCGATCCC-AAAAA-ATCGAAACCGATAATTATAATGTAA
* * * * * *
41890 TATGTAAATTAACAATGTAACCGGTATAAATATACCGGTTAATTAGAAAACATGTCAACATAATG
63 TATGTAAATTTACAATGTAACCGGTATAAATATACCGTTTTATGAGAAAATAGGTCAA-ATAATG
* * * *
41955 TATCGACACTTGTGTAATTTGTATCGATACTTATTGTCCAGAATGAATGCCCAAACGGGTGCACG
127 TATCGACACTTAT-TAATTTGTGTCGATACTT-TTGTCCAGAATGAATACCC-AACGGGTGCACA
*
42020 TATAAA
189 CATAAA
* **
42026 GTGTCGATACAATTATTAAAAGTATCGATCCCAATAAAATCGAAATAGATAATTATAATGTAATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAA-AAAATCGAAACCGATAATTATAATGTAATA
* *
42091 TGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCATCATAAAGT
65 TGTAAATTTACAATGTAACCGGTATAAATATACC-GTTTTATGAGAAAATAGGTCA-AATAATGT
* * * *
42156 ATTGACAGTTATTAAATTTGTGTCGATACATTTTGTCCATAATGAATACCAAACGGGTGCACACA
128 ATCGACACTTATT-AATTTGTGTCGATAC-TTTTGTCCAGAATGAATACCCAACGGGTGCACACA
42221 TAAA
191 TAAA
* * *
42225 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTACAATTTGATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAA-ATCGAAACCGATAATTATAATGTAATA
* * * * *
42290 GGTAAATTTACAATGTACCCGATAGAAATATACCAGTTTTATGAGAAAATAGGTCTAAATAATTT
65 TGTAAATTTACAATGTAACCGGTATAAATATACC-GTTTTATGAGAAAATAGGTC-AAATAATGT
* *
42355 ATCGACACTCT-TTAAGTTTGTGTCAATACTTGTT-TCCAGAATGAATTCCCAACGAGGTGCAC
128 ATCGACACT-TATTAA-TTTGTGTCGATACTT-TTGTCCAGAATGAATACCCAACG-GGTGCAC
42417 GCATGATGAG
Statistics
Matches: 335, Mismatches: 43, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
198 24 0.07
199 237 0.71
200 72 0.21
201 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (194 bp):
GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAAATCGAAACCGATAATTATAATGTAATAT
GTAAATTTACAATGTAACCGGTATAAATATACCGTTTTATGAGAAAATAGGTCAAATAATGTATC
GACACTTATTAATTTGTGTCGATACTTTTGTCCAGAATGAATACCCAACGGGTGCACACATAAA
Found at i:43560 original size:17 final size:18
Alignment explanation
Indices: 43523--43560 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
43513 TTATTTTTAC
*
43523 TTTAATTGCTTTTACTTA
1 TTTAATCGCTTTTACTTA
43541 TTTAATCGCTTTTA-TTA
1 TTTAATCGCTTTTACTTA
43558 TTT
1 TTT
43561 TTTTATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTAATCGCTTTTACTTA
Found at i:47409 original size:21 final size:20
Alignment explanation
Indices: 47383--47431 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
47373 AAAAGACATG
47383 AAAAAAATG-GAAAACAAAAC
1 AAAAAAATGTGAAAA-AAAAC
* *
47403 AACAAAAGTGTGAAAAAAAAG
1 AA-AAAAATGTGAAAAAAAAC
47424 AAAAAAAT
1 AAAAAAAT
47432 CAAATACATT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 7 0.29
21 12 0.50
22 5 0.21
ACGTcount: A:0.73, C:0.06, G:0.12, T:0.08
Consensus pattern (20 bp):
AAAAAAATGTGAAAAAAAAC
Found at i:49116 original size:18 final size:18
Alignment explanation
Indices: 49075--49112 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
49065 TTATTTTTAC
*
49075 TTTAATTGCTTTTACTTA
1 TTTAATCGCTTTTACTTA
49093 TTTAATCGCTTTTA-TTA
1 TTTAATCGCTTTTACTTA
49110 TTT
1 TTT
49113 TAATATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (18 bp):
TTTAATCGCTTTTACTTA
Found at i:49527 original size:23 final size:23
Alignment explanation
Indices: 49501--49547 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
49491 TGGTTAAATG
* *
49501 CATATTTTATTATATAATCGCTA
1 CATATTATATTATATAAGCGCTA
49524 CATATTATATTATATAAGCGCTA
1 CATATTATATTATATAAGCGCTA
49547 C
1 C
49548 CTAATATGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.43
Consensus pattern (23 bp):
CATATTATATTATATAAGCGCTA
Found at i:49527 original size:87 final size:86
Alignment explanation
Indices: 49425--49591 Score: 289
Period size: 87 Copynumber: 1.9 Consensus size: 86
49415 AAATAGGTCA
49425 ATATAAGCGCTACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
* *
49490 CTGGTTAAATGCATATTTTATT
66 CCGGCTAAATG-ATATTTTATT
* *
49512 ATATAATCGCTACATATTATATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
49577 CCGGCTAAATGATAT
66 CCGGCTAAATGATAT
49592 AACATAACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
86 4 0.05
87 72 0.95
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.41
Consensus pattern (86 bp):
ATATAAGCGCTACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGCTAAATGATATTTTATT
Found at i:49559 original size:23 final size:23
Alignment explanation
Indices: 49508--49559 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
49498 ATGCATATTT
* *
49508 TATTATATAATCGCTACATATTA
1 TATTATATAAGCGCTACATAATA
*
49531 TATTATATAAGCGCTACCTAATA
1 TATTATATAAGCGCTACATAATA
*
49554 TGTTAT
1 TATTAT
49560 TGTACTTGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (23 bp):
TATTATATAAGCGCTACATAATA
Found at i:59762 original size:22 final size:21
Alignment explanation
Indices: 59735--59817 Score: 80
Period size: 22 Copynumber: 3.8 Consensus size: 21
59725 TATAGGGCAG
59735 AGGGAATCGATACCCCCTTGA
1 AGGGAATCGATACCCCCTTGA
* *
59756 AGGGGAACCGATTCCCCCTTTGA
1 A-GGGAATCGATACCCCC-TTGA
*
59779 ATGGG-ATCTGATTCCCTCCTTG-
1 A-GGGAATC-GATACCC-CCTTGA
59801 AGGGAATCGATACCCCC
1 AGGGAATCGATACCCCC
59818 ATGGGTTCTG
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
20 2 0.04
21 10 0.19
22 20 0.38
23 18 0.35
24 2 0.04
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (21 bp):
AGGGAATCGATACCCCCTTGA
Found at i:59801 original size:23 final size:22
Alignment explanation
Indices: 59736--59817 Score: 69
Period size: 23 Copynumber: 3.7 Consensus size: 22
59726 ATAGGGCAGA
* *
59736 GGGAATCGATACCCCCTTGAAG
1 GGGAACCGATTCCCCCTTGAAG
*
59758 GGGAACCGATTCCCCCTTTGAAT
1 GGGAACCGATTCCCCC-TTGAAG
* *
59781 GGGATCTGATTCCCTCCTTG-A-
1 GGGAACCGATTCCC-CCTTGAAG
* *
59802 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
59818 ATGGGTTCTG
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
20 2 0.04
21 10 0.20
22 15 0.31
23 20 0.41
24 2 0.04
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.23
Consensus pattern (22 bp):
GGGAACCGATTCCCCCTTGAAG
Found at i:65570 original size:43 final size:42
Alignment explanation
Indices: 65466--65946 Score: 188
Period size: 44 Copynumber: 10.8 Consensus size: 42
65456 AGGCCCTATG
* * * * * *
65466 TTTTCATCTTTGTAATT-AGGTCCCTAATTTTTTAAAATCTTAT
1 TTTTTATCTTTATAATTGAGG-CTCTAATTTTTT-CAATCTCAC
*
65509 TCTTTTGTCTTTATAATTGA-GCTCATAATTTTATTCAATCTCAC
1 T-TTTTATCTTTATAATTGAGGCTC-TAATTTT-TTCAATCTCAC
** **
65553 TTTTTATCTTTATAATTGAATTCTCTAATTTTTTTCAAT-TCTT
1 TTTTTATCTTTATAATTG-AGGCTCTAA-TTTTTTCAATCTCAC
* *
65596 TTTTTA-CTTTTATAATTGAGACCTCTAATTTTTT-AATCTTAC
1 TTTTTATC-TTTATAATTGAG-GCTCTAATTTTTTCAATCTCAC
* * * *
65638 TTTTTAACTTCATAATCGAGGCCCTTAACTTTTTTCAATCTCACTTTCTAC
1 TTTTTATCTTTATAATTGAGGCTC-TAA-TTTTTTCAA--T--C--TC-AC
*
65689 ATTTTCTATCTTTACAATTGAGGCCTCTAAGTTTTCTTTCAATCTCAAC
1 -TTTT-TATCTTTATAATTGAGG-CTCTAA--TTT-TTTCAATCTC-AC
* ** * * * *
65738 -TTCTGCCTTTACAATTGAGGCACCTAACTTTTT-AATC-CTAG
1 TTTTTATCTTTATAATTGAGGC-TCTAATTTTTTCAATCTC-AC
* *
65779 TTTTTAAAT-TTTATAACTGAGGCCCTTAAGTTTTTTTCAATCTCAC
1 TTTTT--ATCTTTATAATTGAGGCTC-TAA--TTTTTTCAATCTCAC
* * * * * *
65825 TTTTTACCTTTATAATTTAGGCCCTCGAGTTTTTTCGATCTCAA
1 TTTTTATCTTTATAATTGAGG--CTCTAATTTTTTCAATCTCAC
* * * * *
65869 TTTCTACCTTTATAATTGAGCCCCTAATTTTTTTTCAATCTCAA
1 TTTTTATCTTTATAATTGAGGCTCTAA--TTTTTTCAATCTCAC
* * * *
65913 TTTCTACCTTTATAATTAAAGCCTCTAATTTTTT
1 TTTTTATCTTTATAATT-GAGGCTCTAATTTTTT
65947 TTAATCACAT
Statistics
Matches: 338, Mismatches: 59, Indels: 82
0.71 0.12 0.17
Matches are distributed among these distances:
41 7 0.02
42 40 0.12
43 74 0.22
44 105 0.31
45 35 0.10
46 31 0.09
47 5 0.01
48 1 0.00
49 4 0.01
50 1 0.00
51 3 0.01
52 4 0.01
53 17 0.05
54 5 0.01
55 6 0.02
ACGTcount: A:0.25, C:0.19, G:0.07, T:0.49
Consensus pattern (42 bp):
TTTTTATCTTTATAATTGAGGCTCTAATTTTTTCAATCTCAC
Found at i:65582 original size:44 final size:42
Alignment explanation
Indices: 65511--65684 Score: 142
Period size: 43 Copynumber: 4.0 Consensus size: 42
65501 AATCTTATTC
* *
65511 TTTTGTCTTTATAATTG-AGCTCATAATTTTATTCAATCTCACT
1 TTTTATCTTTATAATTGAACCTC-TAATTTT-TTCAATCTCACT
* **
65554 TTTTATCTTTATAATTGAATTCTCTAATTTTTTTCAAT-TCTTT
1 TTTTATCTTTATAATTGAA-CCTCTAA-TTTTTTCAATCTCACT
*
65597 TTTTA-CTTTTATAATTGAGACCTCTAATTTTTT-AATCTTACT
1 TTTTATC-TTTATAATTGA-ACCTCTAATTTTTTCAATCTCACT
* * * *
65639 TTTTAACTTCATAATCGAGGCC-CTTAACTTTTTTCAATCTCACT
1 TTTTATCTTTATAATTGA-ACCTC-TAA-TTTTTTCAATCTCACT
65683 TT
1 TT
65685 CTACATTTTC
Statistics
Matches: 109, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
41 4 0.04
42 29 0.27
43 48 0.44
44 21 0.19
45 7 0.06
ACGTcount: A:0.25, C:0.17, G:0.05, T:0.53
Consensus pattern (42 bp):
TTTTATCTTTATAATTGAACCTCTAATTTTTTCAATCTCACT
Found at i:65837 original size:45 final size:45
Alignment explanation
Indices: 65691--65929 Score: 206
Period size: 44 Copynumber: 5.4 Consensus size: 45
65681 CTTTCTACAT
* *
65691 TTTCTATCTTTACAATTGAGG-CCTCTAAGTTTTCTTTCAATCTCAA
1 TTTCTACCTTTATAATTGAGGCCCT-TAAGTTTT-TTTCAATCTCAA
* * * * *
65737 CTTCTGCCTTTACAATTGAGGCACC-TAA--CTTTTT-AATC-CTAG
1 TTTCTACCTTTATAATTGAGGC-CCTTAAGTTTTTTTCAATCTC-AA
* ** * *
65779 TTTTTAAATTTTATAACTGAGGCCCTTAAGTTTTTTTCAATCTCAC
1 TTTCT-ACCTTTATAATTGAGGCCCTTAAGTTTTTTTCAATCTCAA
* * ** *
65825 TTTTTACCTTTATAATTTAGGCCCTCGAG-TTTTTTCGATCTCAA
1 TTTCTACCTTTATAATTGAGGCCCTTAAGTTTTTTTCAATCTCAA
* *
65869 TTTCTACCTTTATAATTGA-GCCCCTAATTTTTTTTCAATCTCAA
1 TTTCTACCTTTATAATTGAGGCCCTTAAGTTTTTTTCAATCTCAA
65913 TTTCTACCTTTATAATT
1 TTTCTACCTTTATAATT
65930 AAAGCCTCTA
Statistics
Matches: 154, Mismatches: 29, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 10 0.06
43 23 0.15
44 63 0.41
45 23 0.15
46 31 0.20
47 1 0.01
48 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.08, T:0.46
Consensus pattern (45 bp):
TTTCTACCTTTATAATTGAGGCCCTTAAGTTTTTTTCAATCTCAA
Found at i:69515 original size:20 final size:20
Alignment explanation
Indices: 69421--69789 Score: 451
Period size: 20 Copynumber: 18.4 Consensus size: 20
69411 GATTTTCCAT
* ** *
69421 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
69441 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
69461 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
69481 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
69501 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
69521 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
69541 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
69561 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
69581 AA-CTGCAACGTGTATCCGTA
1 AATC-GCAACGCGTATCCGTA
69601 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
69621 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
69641 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
69661 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
69681 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
69701 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
69721 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
69741 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
69761 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
69781 AATCACAAC
1 AATCGCAAC
69790 ACTTAAATTT
Statistics
Matches: 305, Mismatches: 34, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
19 4 0.01
20 297 0.97
21 4 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:70708 original size:12 final size:12
Alignment explanation
Indices: 70691--70715 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70681 ATATAATCCT
70691 GAAGAAGAAAAA
1 GAAGAAGAAAAA
70703 GAAGAAGAAAAA
1 GAAGAAGAAAAA
70715 G
1 G
70716 TCCCGAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:73017 original size:19 final size:19
Alignment explanation
Indices: 72995--73268 Score: 345
Period size: 19 Copynumber: 15.4 Consensus size: 19
72985 CGGAAAATAC
*
72995 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
73014 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
73028 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
73048 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
73062 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
73081 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
73100 AATCGCAA--CGACA-G--
1 AATCGCAATGCGAAATGAA
*
73114 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
73133 AATCGCAATGCGGAATGAA
1 AATCGCAATGCGAAATGAA
73152 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
73171 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
73190 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
73209 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
73223 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
73242 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
73261 AATCGCAA
1 AATCGCAA
73269 CGAGATAATC
Statistics
Matches: 224, Mismatches: 10, Indels: 42
0.81 0.04 0.15
Matches are distributed among these distances:
14 38 0.17
15 1 0.00
16 14 0.06
17 12 0.05
18 2 0.01
19 144 0.64
20 13 0.06
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:73150 original size:71 final size:74
Alignment explanation
Indices: 73023--73268 Score: 293
Period size: 71 Copynumber: 3.4 Consensus size: 74
73013 AAATCCCAAC
* *
73023 ATGAAAATCGCAATGCGGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAA
1 ATGAAAATCGCAA-GC-GAAATG-AAATCGCAATGCGAAATGAAAATCGCAATGCGGAATGAAAA
73083 TCGCAATGCGAA
63 TCGCAATGCGAA
* *
73095 ATGAAAATCGCAA-CGACA-G-AATCGCAATGCGAAATTAAAATCGCAATGCGGAATGAAAATCG
1 ATGAAAATCGCAAGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAATGCGGAATGAAAATCG
73157 CAATGCGAA
66 CAATGCGAA
*
73166 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--C-GAA--AGAAT
1 ATGAAAATCGCAA-GCGAAATG-AAATCGCAATGCGAAATGAAAATCGCAATGCGGAATGAAAAT
73226 CGCAATGCGAA
64 CGCAATGCGAA
73237 ATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 ATGAAAATCGCAA-GCGAAATG-AAATCGCAA
73269 CGAGATAATC
Statistics
Matches: 157, Mismatches: 7, Indels: 21
0.85 0.04 0.11
Matches are distributed among these distances:
66 8 0.05
68 3 0.02
69 3 0.02
70 2 0.01
71 93 0.59
72 13 0.08
73 7 0.04
74 2 0.01
76 26 0.17
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.15
Consensus pattern (74 bp):
ATGAAAATCGCAAGCGAAATGAAATCGCAATGCGAAATGAAAATCGCAATGCGGAATGAAAATCG
CAATGCGAA
Found at i:73197 original size:109 final size:104
Alignment explanation
Indices: 73023--73290 Score: 437
Period size: 109 Copynumber: 2.5 Consensus size: 104
73013 AAATCCCAAC
*
73023 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCA
1 ATGAAAATCGCAATGCGG-AATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCA
*
73088 ATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAA
65 ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
*
73128 ATTAAAATCGCAATGCGGAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAAT
1 ATGAAAATCGCAATGCGGAATGAAAATCGCAA--CG--A-GAAAATCGCAATGCGAAATGAAAAT
73193 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
61 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
* *
73237 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGGAATGAAAATCGCAACGAGAAAATCGCAATGCGAAAT
73291 TATAAACGCA
Statistics
Matches: 152, Mismatches: 6, Indels: 11
0.90 0.04 0.07
Matches are distributed among these distances:
104 32 0.21
105 18 0.12
106 2 0.01
107 2 0.01
108 1 0.01
109 97 0.64
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (104 bp):
ATGAAAATCGCAATGCGGAATGAAAATCGCAACGAGAAAATCGCAATGCGAAATGAAAATCGCAA
TGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
Found at i:73238 original size:161 final size:157
Alignment explanation
Indices: 72995--73305 Score: 500
Period size: 161 Copynumber: 2.0 Consensus size: 157
72985 CGGAAAATAC
*
72995 AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAG
1 AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAA
73060 AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGC
66 AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGC
73125 GAAATTA-AAATCGCAATGCGGAATGAA
131 GAAATTATAAA-CGCAATGCGGAATGAA
* *
73152 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCGGAAATGAAAATCGCA
* *
73216 ACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGC
61 ACGAAAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGC
*
73281 AATGCGAAATTATAAACGCATTGCG
126 AATGCGAAATTATAAACGCAATGCG
73306 ATTTTCATTT
Statistics
Matches: 142, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
157 25 0.18
159 1 0.01
161 97 0.68
162 19 0.13
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (157 bp):
AATCGCAACGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAA
AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGC
GAAATTATAAACGCAATGCGGAATGAA
Found at i:73306 original size:52 final size:52
Alignment explanation
Indices: 73023--73290 Score: 428
Period size: 52 Copynumber: 5.0 Consensus size: 52
73013 AAATCCCAAC
73023 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
73076 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGACAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
* * *
73128 ATTAAAATCGCAATGCGGAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
*
73185 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
73237 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
73289 AT
1 AT
73291 TATAAACGCA
Statistics
Matches: 199, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
52 132 0.66
53 17 0.09
54 2 0.01
55 2 0.01
56 1 0.01
57 45 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:73382 original size:33 final size:35
Alignment explanation
Indices: 73300--73417 Score: 141
Period size: 33 Copynumber: 3.2 Consensus size: 35
73290 TTATAAACGC
*
73300 ATTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCG
1 ATTGCGATTTTCATTT-CGCATTGCGA--TTCATCTCG
73338 CATTGCGATTTTCATTTCGCATTGCGATTC-TCTCG
1 -ATTGCGATTTTCATTTCGCATTGCGATTCATCTCG
*
73373 -TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 ATTGCGATTTTCATTTCGCATTGCGA--TTCATCTCG
73409 CATTGCGAT
1 -ATTGCGAT
73418 AGTCATTTTT
Statistics
Matches: 72, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
33 25 0.35
35 7 0.10
36 7 0.10
38 17 0.24
39 16 0.22
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (35 bp):
ATTGCGATTTTCATTTCGCATTGCGATTCATCTCG
Found at i:73425 original size:19 final size:19
Alignment explanation
Indices: 73297--73417 Score: 189
Period size: 19 Copynumber: 6.6 Consensus size: 19
73287 AAATTATAAA
73297 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
73316 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
73336 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
*
73355 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
73371 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
73388 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
73407 CGCATTGCGAT
1 CGCATTGCGAT
73418 AGTCATTTTT
Statistics
Matches: 94, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.06
16 7 0.07
17 7 0.07
19 55 0.59
20 19 0.20
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:73551 original size:13 final size:14
Alignment explanation
Indices: 73524--73559 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
73514 CATCAATTAC
73524 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
73538 ACAAATCATC-TTT
1 ACAAATCAACTTTT
73551 ACAAATCAA
1 ACAAATCAA
73560 TTAAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:75538 original size:14 final size:14
Alignment explanation
Indices: 75519--75575 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
75509 GCGAAATGAA
*
75519 AATCGCAACGACAG
1 AATCGCAACGAAAG
75533 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
75550 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
75566 AATCGCAACG
1 AATCGCAACG
75576 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:75546 original size:33 final size:33
Alignment explanation
Indices: 75500--75592 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
75490 GCGAAACCAA
*
75500 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
75533 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
75566 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
75593 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:75557 original size:19 final size:19
Alignment explanation
Indices: 75463--75597 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
75453 TAGTTTACTT
* *
75463 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
75483 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
75502 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
75521 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
75535 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
75554 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
75568 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
75587 TCGCAATGCGA
1 TCGCAACGCGA
75598 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:75615 original size:19 final size:19
Alignment explanation
Indices: 75593--75721 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
75583 AAAATCGCAA
75593 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
75612 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
75626 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
75645 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
75659 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
75678 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
75697 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
75717 TGCGA
1 TGCGA
75722 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:75635 original size:33 final size:33
Alignment explanation
Indices: 75593--75684 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
75583 AAAATCGCAA
75593 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
75626 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
75659 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
75685 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:76056 original size:93 final size:93
Alignment explanation
Indices: 75765--76236 Score: 912
Period size: 93 Copynumber: 5.1 Consensus size: 93
75755 TTGAATGGAT
75765 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
75830 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
75858 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
75922 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
75950 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
76015 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
*
76043 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATATAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
76107 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
76135 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
76200 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
76228 AAATTTACT
1 AAATTTACT
76237 AAGCAATCTA
Statistics
Matches: 374, Mismatches: 3, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
92 183 0.49
93 191 0.51
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:76077 original size:185 final size:185
Alignment explanation
Indices: 75765--76236 Score: 926
Period size: 185 Copynumber: 2.6 Consensus size: 185
75755 TTGAATGGAT
75765 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
75830 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
75895 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
75950 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
76015 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
76080 TATATTTCACAGTGTTAAAGAATATACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
76135 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
76200 AGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACT
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
76237 AAGCAATCTA
Statistics
Matches: 285, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
185 285 1.00
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TATATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:77956 original size:14 final size:14
Alignment explanation
Indices: 77937--78026 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
77927 TTGAAATGAA
77937 AATCGCAACGAGAG
1 AATCGCAACGAGAG
77951 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
77968 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
77984 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
78003 AATCGCAACGAGAG
1 AATCGCAACGAGAG
78017 AATCGCAACG
1 AATCGCAACG
78027 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:77974 original size:33 final size:33
Alignment explanation
Indices: 77929--78043 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
77919 TCTTTTGGTT
77929 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
77962 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
77995 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
78028 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
78044 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:77975 original size:19 final size:18
Alignment explanation
Indices: 77936--78048 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
77926 GTTGAAATGA
77936 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
77951 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
77968 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
77984 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
78001 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
78017 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
78034 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
78049 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:78079 original size:14 final size:14
Alignment explanation
Indices: 78060--78114 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
78050 TTTGGTTTCG
78060 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
78074 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
78093 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
78107 CGTTGCGA
1 CGTTGCGA
78115 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:78092 original size:33 final size:33
Alignment explanation
Indices: 78044--78114 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
78034 AAAATCGCAA
**
78044 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
78077 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
78110 TGCGA
1 TGCGA
78115 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:78122 original size:33 final size:33
Alignment explanation
Indices: 78055--78136 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
78045 GCGATTTTGG
***
78055 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
78088 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
78121 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
78137 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:78141 original size:20 final size:20
Alignment explanation
Indices: 78067--78155 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
78057 TCGCGTTGCG
78067 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
78087 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
78100 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
78120 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
78140 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
78156 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:78277 original size:33 final size:33
Alignment explanation
Indices: 78235--78305 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
78225 AATACTAACT
*
78235 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
78268 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
78301 TGAAA
1 TGAAA
78306 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:78538 original size:22 final size:22
Alignment explanation
Indices: 78486--78540 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
78476 TGGTTGTGAG
**
78486 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
78508 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
78530 GGATTTCTTCG
1 GGATTTCTTCG
78541 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:78711 original size:20 final size:20
Alignment explanation
Indices: 78686--78859 Score: 217
Period size: 20 Copynumber: 8.7 Consensus size: 20
78676 CTTTAAATAT
78686 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
78706 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
78728 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
78747 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
78767 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
78787 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
78807 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
78827 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
78847 CGCGTTGCGATTT
1 CGCGTTGCGATTT
78860 TCATATTCGC
Statistics
Matches: 132, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
19 2 0.02
20 113 0.86
21 15 0.11
22 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:78868 original size:20 final size:20
Alignment explanation
Indices: 78685--78878 Score: 66
Period size: 20 Copynumber: 9.7 Consensus size: 20
78675 GCTTTAAATA
***
78685 TCGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTATATAT
* *
78705 ACGCGTTGCGATTTTATGTAT
1 TCGCGTTGCGA-TTTATATAT
** ***
78726 TATCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTATATAT
* * ***
78746 ACGCGTTGCGATATACGGAT
1 TCGCGTTGCGATTTATATAT
* * ***
78766 ACGCATTGCGATTTACCCAT
1 TCGCGTTGCGATTTATATAT
* ***
78786 ACGCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTATATAT
* * ***
78806 ACACGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTATATAT
* * *
78826 ACGCGTTGCGATTTATGTGT
1 TCGCGTTGCGATTTATATAT
78846 TCGCGTTGCGATTT-TCATAT
1 TCGCGTTGCGATTTAT-ATAT
*
78866 TCGCATTGCGATT
1 TCGCGTTGCGATT
78879 ATGGAAAATC
Statistics
Matches: 144, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
19 1 0.01
20 128 0.89
21 15 0.10
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.36
Consensus pattern (20 bp):
TCGCGTTGCGATTTATATAT
Found at i:78878 original size:60 final size:60
Alignment explanation
Indices: 78686--78859 Score: 249
Period size: 60 Copynumber: 2.9 Consensus size: 60
78676 CTTTAAATAT
**
78686 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
78747 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* *
78807 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTT
78860 TCATATTCGC
Statistics
Matches: 97, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
60 69 0.71
61 28 0.29
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:78959 original size:20 final size:20
Alignment explanation
Indices: 78934--78985 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
78924 AAGAATCGCG
*
78934 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
78954 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
78974 TTGCGATTCTGG
1 TTGCGATTCTGG
78986 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:90092 original size:254 final size:252
Alignment explanation
Indices: 89641--90265 Score: 653
Period size: 254 Copynumber: 2.4 Consensus size: 252
89631 TAATATTTTG
* * * * * * **
89641 AATAATAAAATGAGTTGTACCTAAAATGTTATCAGAGTTTAAACTGATAGAGACTTTTAATTTCT
1 AATAATAAAATGGGTTGGACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTAGAATTTC-
* *
89706 CACGATAAGAAAATAAGTTAAAAGCTTAAAATGTTATGAATATGTATAATAAATACGGTTGCGCC
65 CACGATAAGAAAATAAGTTAAAAGCTT-AAA----ATG----T-TATAATAAATACAGTTGCACC
* * *
89771 TAATAATATCATAGTTCACTAAGAAACAAGTTGCGATTTGTAATGTTAATATTTTTATTAATAAA
120 CAATAATATCATAGTTCACTAAGAAACAAGTTGCGATATGTAATGTTAATATTTCTATTAATAAA
* ** * ** *
89836 ATAGGTTGC-GTTGAAGAATGTCATAGTTCAATAAAAAAAACATGTTACAATCTGGAATATTACT
185 ATAGGTTCCAACT-AAGAATGTCATAGTT--ATAAAAAAAACATGTTACAACCACGAATATTAAT
89900 ATCTAT
247 ATCTAT
* *
89906 AATAATAAAATGGGTTGGACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTGGAGTTTCC
1 AATAATAAAATGGGTTGGACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTAGAATTTCC
* * *
89971 ACGATAAAAAAATAAGTTAAAAGCTTAAAATGTTATAATAACTACAGTTGCACCCAATAATGTCA
66 ACGATAAGAAAATAAGTTAAAAGCTTAAAATGTTATAATAAATACAGTTGCACCCAATAATATCA
* * * *
90036 TGGTTCACTAAGAAA-TAGATTGCGATATGTGATGTTAATATTTCTATTAGTAAAATAGGTTCCA
131 TAGTTCACTAAGAAACAAG-TTGCGATATGTAATGTTAATATTTCTATTAATAAAATAGGTTCCA
* * * * * * * * * *
90100 ACTATGAATGTCATGGTTTTGAAGAAAGCATGTTGCAACCACGAATCTTAATATTTTT
195 ACTAAGAATGTCATAGTTATAAAAAAAACATGTTACAACCACGAATATTAATATCTAT
* *
90158 AATAATAAAATGGTTTGCG-CCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTAGATTTTC
1 AATAATAAAATGGGTTG-GACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTAGAATTT-
* * **
90222 CCATGATAAGAAAATAAGGTAAAAAGCAGAAAATGTTATGAATA
64 CCACGATAAGAAAATAA-GTTAAAAGCTTAAAATGTTAT-AATA
90266 TATATATAAA
Statistics
Matches: 308, Mismatches: 46, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
252 86 0.28
253 18 0.06
254 111 0.36
255 6 0.02
259 3 0.01
263 3 0.01
264 26 0.08
265 55 0.18
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (252 bp):
AATAATAAAATGGGTTGGACCTAAAATATTATCAAAGTTTAAGCTGATAGAGCCTTAGAATTTCC
ACGATAAGAAAATAAGTTAAAAGCTTAAAATGTTATAATAAATACAGTTGCACCCAATAATATCA
TAGTTCACTAAGAAACAAGTTGCGATATGTAATGTTAATATTTCTATTAATAAAATAGGTTCCAA
CTAAGAATGTCATAGTTATAAAAAAAACATGTTACAACCACGAATATTAATATCTAT
Found at i:92901 original size:3 final size:3
Alignment explanation
Indices: 92888--92945 Score: 77
Period size: 3 Copynumber: 20.0 Consensus size: 3
92878 AAAAATGATG
*
92888 TAA TAA TTAA TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA T-A TAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
92933 TAA -AA TAA -AA TAA
1 TAA TAA TAA TAA TAA
92946 AAAAAGACAC
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
2 6 0.12
3 40 0.82
4 3 0.06
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:93509 original size:28 final size:28
Alignment explanation
Indices: 93490--93555 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
93480 AGGGAAACTG
93490 ACTCAAAGATTTGTTTCAAGAAAAACAA
1 ACTCAAAGATTTGTTTCAAGAAAAACAA
*
93518 ACTCAAATATTTGTTTCAAGAAAAACAA
1 ACTCAAAGATTTGTTTCAAGAAAAACAA
93546 ACTCAAAGAT
1 ACTCAAAGAT
93556 GATGTGTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (28 bp):
ACTCAAAGATTTGTTTCAAGAAAAACAA
Found at i:94038 original size:27 final size:27
Alignment explanation
Indices: 93988--94073 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 27
93978 ATTTGTTTTT
* * *
93988 AAAGAAATAGACTCAAAGATGATTTTGTTA
1 AAAGAAACAAACTCAAAGAT--TTTT-TCA
*
94018 AGAGAAACAAACTCAAAGATTTTTTCA
1 AAAGAAACAAACTCAAAGATTTTTTCA
* * *
94045 AAAGGAACAGACTCAAATATTTGTTTCA
1 AAAGAAACAAACTCAAAGATTT-TTTCA
94073 A
1 A
94074 GATAAACTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
27 20 0.43
28 10 0.21
30 17 0.36
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.28
Consensus pattern (27 bp):
AAAGAAACAAACTCAAAGATTTTTTCA
Found at i:100482 original size:30 final size:30
Alignment explanation
Indices: 100439--100542 Score: 113
Period size: 30 Copynumber: 3.5 Consensus size: 30
100429 CAGACGCTTA
* * *
100439 AAGGG-CTATAATAGAAAAAACAGAAAGTT
1 AAGGGACTAAAATAGAAAAAATAGAAACTT
* * *
100468 AAGGGACCAAAATAGTAAAAATAGAAACCT
1 AAGGGACTAAAATAGAAAAAATAGAAACTT
* *
100498 AAAGGACTAAAATAGCATAAAATAGAAACTT
1 AAGGGACTAAAATAG-AAAAAATAGAAACTT
100529 -AGGGACTAAAATAG
1 AAGGGACTAAAATAG
100543 TAATAGTAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
29 5 0.08
30 44 0.72
31 12 0.20
ACGTcount: A:0.56, C:0.10, G:0.18, T:0.16
Consensus pattern (30 bp):
AAGGGACTAAAATAGAAAAAATAGAAACTT
Found at i:100569 original size:60 final size:61
Alignment explanation
Indices: 100437--100555 Score: 143
Period size: 60 Copynumber: 2.0 Consensus size: 61
100427 TACAGACGCT
* * * * *
100437 TAAAGGGCTATAATAG-AAAAAACAGAAAGTTAAGGGACCAAAATAGTAAAAATAGAAACC
1 TAAAGGACTAAAATAGCATAAAACAGAAACTTAAGGGACCAAAATAGTAAAAATAAAAACC
* * * *
100497 TAAAGGACTAAAATAGCATAAAATAGAAACTT-AGGGACTAAAATAGTAATAGTAAAAAC
1 TAAAGGACTAAAATAGCATAAAACAGAAACTTAAGGGACCAAAATAGTAAAAATAAAAAC
100556 TTTAAGGGTT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 37 0.76
61 12 0.24
ACGTcount: A:0.56, C:0.09, G:0.17, T:0.18
Consensus pattern (61 bp):
TAAAGGACTAAAATAGCATAAAACAGAAACTTAAGGGACCAAAATAGTAAAAATAAAAACC
Found at i:101915 original size:19 final size:20
Alignment explanation
Indices: 101879--101920 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
101869 CAAAATGATG
*
101879 TAATAATAATTACTAATA-A
1 TAATAATAATTACAAATATA
101898 TAATAATAATATA-AAATATA
1 TAATAATAAT-TACAAATATA
101918 TAA
1 TAA
101921 AAAACATGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TAATAATAATTACAAATATA
Found at i:106741 original size:18 final size:18
Alignment explanation
Indices: 106699--106744 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
106689 TGGTTTTATT
*
106699 AAAATTTAAATTATTATA
1 AAAATTTAAATTATTACA
* *
106717 AATAATTTAATTTCTTACA
1 AA-AATTTAAATTATTACA
106736 AAAATTTAA
1 AAAATTTAA
106745 CAGATATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAATTTAAATTATTACA
Found at i:107268 original size:20 final size:20
Alignment explanation
Indices: 107239--107408 Score: 159
Period size: 20 Copynumber: 8.5 Consensus size: 20
107229 GCGATTTTCC
* *
107239 TAAATTGCAATGCGAATACG
1 TAAATCGCAATGCGATTACG
*
107259 TAAATCGCAATGCGAATTAGG
1 TAAATCGCAATGCG-ATTACG
*
107280 AAAATCGCAATGCGATTACG
1 TAAATCGCAATGCGATTACG
*
107300 TAAATCGTAATGCGATTACG
1 TAAATCGCAATGCGATTACG
* *
107320 T-ATTCGCATTGCGATTTACG
1 TAAATCGCAATGCGA-TTACG
*
107340 T-AATCGCATTGCGATTTACG
1 TAAATCGCAATGCGA-TTACG
*
107360 T-AATCGCATTGCGATTTACG
1 TAAATCGCAATGCGA-TTACG
* * **
107380 T-ATTCGCATTGCGATTTTG
1 TAAATCGCAATGCGATTACG
107399 TAAATCGCAA
1 TAAATCGCAA
107409 CGAGATTCTG
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
19 14 0.11
20 100 0.76
21 17 0.13
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (20 bp):
TAAATCGCAATGCGATTACG
Found at i:107273 original size:41 final size:41
Alignment explanation
Indices: 107228--107358 Score: 106
Period size: 41 Copynumber: 3.2 Consensus size: 41
107218 ACTATTGCAT
* * *
107228 TGCGATTTTCCTAAATTGCAATGCGAATACGTAAATCGCAA
1 TGCGATTTACCAAAATCGCAATGCGAATACGTAAATCGCAA
* ** * *
107269 TGCGAATTAGGAAAATCGCAATGCGATTACGTAAATCGTAA
1 TGCGATTTACCAAAATCGCAATGCGAATACGTAAATCGCAA
** * * * *
107310 TGCGA-TTA-CGTATTCGCATTGCGATTTACGT-AATCGCAT
1 TGCGATTTACCAAAATCGCAATGCGA-ATACGTAAATCGCAA
107349 TGCGATTTAC
1 TGCGATTTAC
107359 GTAATCGCAT
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
39 22 0.31
40 12 0.17
41 38 0.53
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (41 bp):
TGCGATTTACCAAAATCGCAATGCGAATACGTAAATCGCAA
Found at i:107362 original size:60 final size:61
Alignment explanation
Indices: 107224--107396 Score: 199
Period size: 60 Copynumber: 2.9 Consensus size: 61
107214 TCTGACTATT
* * * * * * * *
107224 GCATTGCGATTTTCCTAAATTGCAATGCGAATACGTAAATCGCAATGCGAATTAGGAAAATC
1 GCATTGCGATTTACGTAAATCGCAATGCGATTACGT-ATTCGCATTGCGATTTACGAAAATC
* * *
107286 GCAATGCGA-TTACGTAAATCGTAATGCGATTACGTATTCGCATTGCGATTTACG-TAATC
1 GCATTGCGATTTACGTAAATCGCAATGCGATTACGTATTCGCATTGCGATTTACGAAAATC
*
107345 GCATTGCGATTTACGT-AATCGCATTGCGATTTACGTATTCGCATTGCGATTT
1 GCATTGCGATTTACGTAAATCGCAATGCGA-TTACGTATTCGCATTGCGATTT
107397 TGTAAATCGC
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
59 23 0.24
60 43 0.45
61 21 0.22
62 8 0.08
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (61 bp):
GCATTGCGATTTACGTAAATCGCAATGCGATTACGTATTCGCATTGCGATTTACGAAAATC
Found at i:108296 original size:24 final size:24
Alignment explanation
Indices: 108269--108322 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
108259 GTATTCGAAA
108269 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
108293 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
108317 TTTGAT
1 TTTGAT
108323 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:110599 original size:12 final size:12
Alignment explanation
Indices: 110577--110613 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
110567 TGGTGTTAAG
110577 CAAAA-CGCAAT
1 CAAAATCGCAAT
110588 CAAAATCGCAAT
1 CAAAATCGCAAT
110600 CAAAATCGCAAT
1 CAAAATCGCAAT
110612 CA
1 CA
110614 TCTTTAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.51, C:0.27, G:0.08, T:0.14
Consensus pattern (12 bp):
CAAAATCGCAAT
Found at i:110895 original size:19 final size:19
Alignment explanation
Indices: 110870--110994 Score: 82
Period size: 19 Copynumber: 7.4 Consensus size: 19
110860 GGAAATGACT
110870 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
110889 ATTGCAA--CG--A-GATA
1 ATCGCAATGCGAAATGAAA
110903 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
110922 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
110936 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* **
110955 ATCACAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
*
110969 ATCGCAAAGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
110988 ATCGCAA
1 ATCGCAA
110995 CGTGAATTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 30
0.65 0.10 0.25
Matches are distributed among these distances:
14 27 0.34
15 3 0.04
16 6 0.08
17 6 0.08
18 3 0.04
19 34 0.43
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:110912 original size:33 final size:33
Alignment explanation
Indices: 110870--110996 Score: 209
Period size: 33 Copynumber: 3.8 Consensus size: 33
110860 GGAAATGACT
* *
110870 ATCGCAATGCGAAATGAAAATTGCAACGAGATA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
110903 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
110936 ATCGCAATGCGAAATGAAAATCACAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
110969 ATCGCAAAGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
110997 TGAATTTAGT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:111023 original size:19 final size:19
Alignment explanation
Indices: 111001--111041 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
110991 GCAACGTGAA
111001 TTTAGTTTCGCGTTGCGAT
1 TTTAGTTTCGCGTTGCGAT
*
111020 TTTAGTTTCGCGTTGTGAT
1 TTTAGTTTCGCGTTGCGAT
111039 TTT
1 TTT
111042 GTCGTTGCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.12, G:0.24, T:0.54
Consensus pattern (19 bp):
TTTAGTTTCGCGTTGCGAT
Found at i:111053 original size:14 final size:14
Alignment explanation
Indices: 111025--111070 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
111015 GCGATTTTAG
* *
111025 TTTCGCGTTGTGAT
1 TTTCTCGTTGCGAT
*
111039 TTTGTCGTTGCGAT
1 TTTCTCGTTGCGAT
*
111053 TCTCTCGTTGCGAT
1 TTTCTCGTTGCGAT
111067 TTTC
1 TTTC
111071 ATTTCGCATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.07, C:0.20, G:0.24, T:0.50
Consensus pattern (14 bp):
TTTCTCGTTGCGAT
Found at i:111211 original size:14 final size:14
Alignment explanation
Indices: 111192--111228 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
111182 CATCAATTAA
111192 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
111206 ACAAATCATCTTTT
1 ACAAATCAACTTTT
111220 ACAAATCAA
1 ACAAATCAA
111229 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:112649 original size:21 final size:21
Alignment explanation
Indices: 112583--112649 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
112573 GTGAATCAGG
* *
112583 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGAGAGGGGA
* * * * *
112603 CTTCTTCAACGATGAAAGTGGC
1 C-TCTTGAACGGTGAGAGGGGA
112625 CTCTTGAACGGTGAGAGGGGA
1 CTCTTGAACGGTGAGAGGGGA
112646 CTCT
1 CTCT
112650 CGAGGAATGA
Statistics
Matches: 33, Mismatches: 12, Indels: 3
0.69 0.25 0.06
Matches are distributed among these distances:
20 1 0.03
21 29 0.88
22 3 0.09
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.25
Consensus pattern (21 bp):
CTCTTGAACGGTGAGAGGGGA
Found at i:113142 original size:19 final size:19
Alignment explanation
Indices: 113102--113247 Score: 140
Period size: 19 Copynumber: 7.8 Consensus size: 19
113092 TCTGGAACTT
*
113102 AAAATCGCAACGTGAAAAATG
1 AAAATCGCAACGCG--AAATG
**
113123 ACTATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
113142 AAAATCGCAACGAGAGAATG
1 AAAATCGCAACGCGA-AATG
* *
113162 AAAATCGCAACACGAAACG
1 AAAATCGCAACGCGAAATG
113181 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
113200 AAAATCACAA--C--AA-G
1 AAAATCGCAACGCGAAATG
* * *
113214 AGAATCGCAATGCAAAATG
1 AAAATCGCAACGCGAAATG
113233 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
113248 TTATAGTTTC
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
14 9 0.09
15 2 0.02
16 1 0.01
17 1 0.01
18 2 0.02
19 59 0.58
20 17 0.17
21 11 0.11
ACGTcount: A:0.49, C:0.21, G:0.19, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:113171 original size:39 final size:38
Alignment explanation
Indices: 113102--113211 Score: 130
Period size: 39 Copynumber: 2.8 Consensus size: 38
113092 TCTGGAACTT
* ** * *
113102 AAAATCGCAACGTGAAAAATGACTATCGCAACGCGAAATG
1 AAAATCGCAAC--GAGAAATGAAAATCGCAACACGAAACG
113142 AAAATCGCAACGAGAGAATGAAAATCGCAACACGAAACG
1 AAAATCGCAACGAGA-AATGAAAATCGCAACACGAAACG
* *
113181 AAAATCGCAACGCGAAATGAAAATCACAACA
1 AAAATCGCAACGAGAAATGAAAATCGCAACA
113212 AGAGAATCGC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
38 18 0.29
39 33 0.53
40 11 0.18
ACGTcount: A:0.50, C:0.21, G:0.18, T:0.11
Consensus pattern (38 bp):
AAAATCGCAACGAGAAATGAAAATCGCAACACGAAACG
Found at i:113280 original size:20 final size:19
Alignment explanation
Indices: 113255--113311 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 19
113245 CGATTATAGT
113255 TTCGCGTTGCGATATTTGGC
1 TTCGCGTTGCGAT-TTTGGC
*
113275 TTCGCGTTGCGATTTTTGGT
1 TTCGCGTTGCGA-TTTTGGC
113295 TTCGCGTTGCGATTTTG
1 TTCGCGTTGCGATTTTG
113312 TCGTTGCGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
19 5 0.14
20 29 0.83
21 1 0.03
ACGTcount: A:0.07, C:0.18, G:0.30, T:0.46
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTGGC
Found at i:113336 original size:33 final size:33
Alignment explanation
Indices: 113279--113377 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
113269 TTTGGCTTCG
* *
113279 CGTTGCGATTTTTGGTTTCGCGTTGCGATTTTGT
1 CGTTGCGA-TTTTCGTTTCGCGTTGCGATTTTCT
* *
113313 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATTTTCGTTTCGCGTTGCGATTTTCT
*
113346 CGTTGCGATTTTCGTTTCGAGTTGCGATTTTC
1 CGTTGCGATTTTCGTTTCGCGTTGCGATTTTC
113378 ATTTCAACCA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
33 50 0.86
34 8 0.14
ACGTcount: A:0.08, C:0.19, G:0.25, T:0.47
Consensus pattern (33 bp):
CGTTGCGATTTTCGTTTCGCGTTGCGATTTTCT
Found at i:113337 original size:19 final size:19
Alignment explanation
Indices: 113253--113382 Score: 109
Period size: 19 Copynumber: 7.3 Consensus size: 19
113243 CGCGATTATA
*
113253 GTTTCGCGTTGCGATATTTG
1 GTTTCGCGTTGCGAT-TTTC
* *
113273 GCTTCGCGTTGCGATTTTTG
1 GTTTCGCGTTGCGA-TTTTC
113293 GTTTCGCGTTGCGATTTT-
1 GTTTCGCGTTGCGATTTTC
113311 G--T--CGTTGCGATTTTC
1 GTTTCGCGTTGCGATTTTC
*
113326 ATTTCGCGTTGCGA--TTC
1 GTTTCGCGTTGCGATTTTC
*
113343 ---TCTCGTTGCGATTTTC
1 GTTTCGCGTTGCGATTTTC
*
113359 GTTTCGAGTTGCGATTTTC
1 GTTTCGCGTTGCGATTTTC
*
113378 ATTTC
1 GTTTC
113383 AACCAAAAGA
Statistics
Matches: 92, Mismatches: 7, Indels: 23
0.75 0.06 0.19
Matches are distributed among these distances:
14 22 0.24
16 4 0.04
17 4 0.04
18 1 0.01
19 30 0.33
20 30 0.33
21 1 0.01
ACGTcount: A:0.08, C:0.19, G:0.25, T:0.47
Consensus pattern (19 bp):
GTTTCGCGTTGCGATTTTC
Found at i:113585 original size:94 final size:93
Alignment explanation
Indices: 113473--113774 Score: 532
Period size: 94 Copynumber: 3.2 Consensus size: 93
113463 ATGGATTGCA
* *
113473 TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGTT
1 TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
* *
113538 TAACAGAATTGGCAGCAAACGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
113566 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
113631 TTAGTAGAATTGGCAGCAACCGAACAAAT
65 TTAGCAGAATTGGCAGCAACCGAACAAAT
113660 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
113725 TTAGCAGAATTGGCAGCAACCGAATAAAT
65 TTAGCAGAATTGGCAGCAACCGAACAAAT
113754 TTACTTCAACCAAAAGACAAA
1 TTACTTCAACCAAAAGACAAA
113775 TACTAACTTC
Statistics
Matches: 201, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
93 21 0.10
94 180 0.90
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.21
Consensus pattern (93 bp):
TTACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:113827 original size:78 final size:79
Alignment explanation
Indices: 113684--113836 Score: 254
Period size: 78 Copynumber: 1.9 Consensus size: 79
113674 AAGACAAAAC
*
113684 AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAA
1 AAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGCAGAATTGGCAGCAACCGAA
113749 TAAATTTACTTCAACCA
63 TAAATTTACTTCAACCA
*
113766 AAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAGCAGTATTGGCAGCAACCGAATAA
1 AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGAATTGGCAGCAACCGAATAA
113830 ATTTACT
66 ATTTACT
113837 AAGCAATCTA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
78 42 0.61
82 27 0.39
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.25
Consensus pattern (79 bp):
AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGAATTGGCAGCAACCGAATAA
ATTTACTTCAACCA
Found at i:115548 original size:20 final size:20
Alignment explanation
Indices: 115523--115585 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
115513 TTTTGGTTGA
115523 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
*
115543 AATGAAAATCGCAACGCG-G
1 AATGAAAATCGCAACGAGAG
** *
115562 AAATGACTATTGCAACGAGAG
1 -AATGAAAATCGCAACGAGAG
115583 AAT
1 AAT
115586 CGCAACGCGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 34 0.94
21 1 0.03
ACGTcount: A:0.46, C:0.16, G:0.24, T:0.14
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:115565 original size:40 final size:35
Alignment explanation
Indices: 115521--115613 Score: 100
Period size: 33 Copynumber: 2.6 Consensus size: 35
115511 TCTTTTGGTT
115521 GAAATGAAAATCGCAACGAGAGAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAG-A-G--AATCGCAACGC
** *
115560 GGAAATGACTATTGCAAC--GAGAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAGAGAATCGCAACGC
115594 GAAATGAAAATCGCAACGAG
1 GAAATGAAAATCGCAACGAG
115614 TTTCGCGTTG
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
33 14 0.31
34 11 0.24
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.07
40 14 0.31
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.12
Consensus pattern (35 bp):
GAAATGAAAATCGCAACGAGAGAGAATCGCAACGC
Found at i:115637 original size:19 final size:19
Alignment explanation
Indices: 115614--115799 Score: 195
Period size: 19 Copynumber: 9.9 Consensus size: 19
115604 TCGCAACGAG
**
115614 TTTCGCGTTGCGATTTTGG
1 TTTCGCGTTGCGATTTTCA
*
115633 TTTCGCATTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTCA
*
115651 TTTCGTGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
115670 TTTCGCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
115689 TTTCGCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
115708 TTTCGCGTTGCGA--TTC-
1 TTTCGCGTTGCGATTTTCA
*
115724 --TCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
* **
115741 TTTCTCTCGTTGCGATAGTCA
1 -TT-TCGCGTTGCGATTTTCA
*
115762 TTTTCGTGTTGCGATTTTCA
1 -TTTCGCGTTGCGATTTTCA
**
115782 TTTTCATGTTGCGATTTT
1 -TTTCGCGTTGCGATTTT
115800 AAGTTTAGAA
Statistics
Matches: 145, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
14 10 0.07
16 3 0.02
17 3 0.02
18 14 0.10
19 67 0.46
20 30 0.21
21 18 0.12
ACGTcount: A:0.11, C:0.19, G:0.21, T:0.49
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:115747 original size:21 final size:20
Alignment explanation
Indices: 115728--115799 Score: 92
Period size: 20 Copynumber: 3.5 Consensus size: 20
115718 CGATTCTCTC
115728 GTTGCGATTTTCATTTCTC-T
1 GTTGCGATTTTCATTT-TCAT
** *
115748 CGTTGCGATAGTCATTTTCGT
1 -GTTGCGATTTTCATTTTCAT
115769 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTCAT
115789 GTTGCGATTTT
1 GTTGCGATTTT
115800 AAGTTTAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
20 30 0.67
21 15 0.33
ACGTcount: A:0.12, C:0.17, G:0.19, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCAT
Found at i:116373 original size:20 final size:20
Alignment explanation
Indices: 116350--116443 Score: 143
Period size: 20 Copynumber: 4.7 Consensus size: 20
116340 CGATAGTCAG
116350 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
116370 ATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGT
*
116390 AATTCGCATTGTGATTTACGT
1 -ATTCGCATTGCGATTTACGT
*
116411 AATCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
116431 ATTCGCATTGCGA
1 ATTCGCATTGCGA
116444 ATTAGGAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
20 48 0.74
21 17 0.26
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:116406 original size:41 final size:40
Alignment explanation
Indices: 116350--116443 Score: 143
Period size: 41 Copynumber: 2.3 Consensus size: 40
116340 CGATAGTCAG
* *
116350 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
* *
116390 AATTCGCATTGTGATTTACGTAATCGCATTGCGATTTACGT
1 -ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
116431 ATTCGCATTGCGA
1 ATTCGCATTGCGA
116444 ATTAGGAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 12 0.25
41 36 0.75
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
Found at i:116456 original size:41 final size:39
Alignment explanation
Indices: 116329--116458 Score: 127
Period size: 41 Copynumber: 3.2 Consensus size: 39
116319 GGCGCTATGT
*
116329 AAATCGCATTGCGATAGTCAG-ATTCGCATTGCGATTTACG
1 AAATCGCATTGCGAT-TTC-GTATTCGCATTGCGATTTACG
* * * *
116369 TATTCGCATTGCGATTTTCCTAATTCGCATTGTGATTTACG
1 AAATCGCATTGCGA-TTTCGT-ATTCGCATTGCGATTTACG
* * *
116410 TAATCGCATTGCGATTTACGTATTCGCATTGCGAATTAGG
1 AAATCGCATTGCGATTT-CGTATTCGCATTGCGATTTACG
116450 AAAATCGCA
1 -AAATCGCA
116459 ACGCGAATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
40 33 0.45
41 41 0.55
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (39 bp):
AAATCGCATTGCGATTTCGTATTCGCATTGCGATTTACG
Found at i:116464 original size:21 final size:21
Alignment explanation
Indices: 116440--116485 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
116430 TATTCGCATT
116440 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
116461 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
116482 GCGA
1 GCGA
116486 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:118327 original size:30 final size:30
Alignment explanation
Indices: 118292--118350 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
118282 AATAAATTAG
*
118292 CATAATTATATATTTGGTCCTTAATATTTC
1 CATAATTATACATTTGGTCCTTAATATTTC
118322 CATAATTATACATTTGGTCCTTAATATTT
1 CATAATTATACATTTGGTCCTTAATATTT
118351 ATATATTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.49
Consensus pattern (30 bp):
CATAATTATACATTTGGTCCTTAATATTTC
Found at i:118913 original size:168 final size:169
Alignment explanation
Indices: 118704--119034 Score: 495
Period size: 169 Copynumber: 2.0 Consensus size: 169
118694 TTATTTGTTT
* * *
118704 AAATAAATTATTTTTTCTTTAACCGTTAATCGAATCAAAATTTATTTGAAAATTATTAACCGAAC
1 AAATAAATTATTTTTTCCTTAACCGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCAAAC
* * * *
118769 CAAATAAACC-GATTTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACTGTTAATCGAAT
66 CAAATAAACCAAATTTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGATAATCGAAC
* * *
118833 CGAAATTTATTTGAAAATCATTAATCGAATTAACCGAATA
131 CAAAATTTATTTAAAAATCATTAACCG-ATTAACCGAATA
* *
118873 AAATAAATTA-TTTTTCCTTAACTGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCAAAT
1 AAATAAATTATTTTTTCCTTAACCGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCAAAC
* * *
118937 CGAATTAACCAAATTTTTTTCTTTAACCATTAATCGAACCGAAATTATTTGACCGATAATCGAAC
66 CAAATAAACCAAATTTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGATAATCGAAC
*
119002 CAAAATTTATTTAAAAATTATTAACCGATTAAC
131 CAAAATTTATTTAAAAATCATTAACCGATTAAC
119035 GGTTAATTTG
Statistics
Matches: 145, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
168 63 0.43
169 82 0.57
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (169 bp):
AAATAAATTATTTTTTCCTTAACCGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCAAAC
CAAATAAACCAAATTTTTTTCTTTAACCATTAATCGAACCAAAATTATTTGACCGATAATCGAAC
CAAAATTTATTTAAAAATCATTAACCGATTAACCGAATA
Found at i:118971 original size:69 final size:73
Alignment explanation
Indices: 118823--118988 Score: 189
Period size: 74 Copynumber: 2.3 Consensus size: 73
118813 TATTTGACTG
* *
118823 TTAATCGAATCGAAATTTATTTGAAAATCATTAATCGAATTAACCGAATAAAATAAATTATTTTT
1 TTAATCGAACCGAAATTTATTTGAAAATCATTAATCGAA-TAACCGAATAAAACAAATTATTTTT
**
118888 CCTTAACTG
65 CCTTAACCA
* * * * * *
118897 TTAATCGAACCAAAATTTATTTGAAAATTATTAA-C-CA-AATCGAATTAACCAAATT-TTTTTC
1 TTAATCGAACCGAAATTTATTTGAAAATCATTAATCGAATAACCGAATAAAACAAATTATTTTTC
*
118958 TTTAACCA
66 CTTAACCA
118966 TTAATCGAACCGAAA-TTATTTGA
1 TTAATCGAACCGAAATTTATTTGA
118989 CCGATAATCG
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
68 8 0.10
69 25 0.31
70 14 0.17
72 1 0.01
73 1 0.01
74 31 0.39
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (73 bp):
TTAATCGAACCGAAATTTATTTGAAAATCATTAATCGAATAACCGAATAAAACAAATTATTTTTC
CTTAACCA
Found at i:119119 original size:17 final size:17
Alignment explanation
Indices: 119097--119129 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
119087 GTTAAAGAAA
119097 AAATAATTTATTTAAAC
1 AAATAATTTATTTAAAC
*
119114 AAATAATTTGTTTAAA
1 AAATAATTTATTTAAA
119130 TTTTTTTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (17 bp):
AAATAATTTATTTAAAC
Found at i:120058 original size:35 final size:35
Alignment explanation
Indices: 119987--120076 Score: 92
Period size: 35 Copynumber: 2.5 Consensus size: 35
119977 AATCCTTTTC
* *
119987 TTATTATTATTTATTATTTATTTATTGTTTATTTTAT
1 TTATT-TTATTTATT-TTTATCTAATGTTTATTTTAT
*
120024 TTATTTTATTTCTTTTTATCTAATGTTTCA-TTTAT
1 TTATTTTATTTATTTTTATCTAATGTTT-ATTTTAT
* *
120059 ATGTTTTACTTTATTTTT
1 TTATTTTA-TTTATTTTT
120077 TTTATTATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
35 23 0.51
36 17 0.38
37 5 0.11
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.71
Consensus pattern (35 bp):
TTATTTTATTTATTTTTATCTAATGTTTATTTTAT
Found at i:120115 original size:43 final size:41
Alignment explanation
Indices: 120062--120141 Score: 97
Period size: 43 Copynumber: 1.9 Consensus size: 41
120052 CATTTATATG
* * * *
120062 TTTTACTTTATTTTTTTTATTATATATGTATATTTTTTACTTT
1 TTTTAATTTATTATTATTAATAT-TAT-TATATTTTTTACTTT
*
120105 TTTTAATTTATTATTATTAATATTATTTTATTTTTTA
1 TTTTAATTTATTATTATTAATATTATTATATTTTTTA
120142 TTATGTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 10 0.31
42 3 0.09
43 19 0.59
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (41 bp):
TTTTAATTTATTATTATTAATATTATTATATTTTTTACTTT
Found at i:120139 original size:33 final size:34
Alignment explanation
Indices: 120056--120140 Score: 97
Period size: 34 Copynumber: 2.5 Consensus size: 34
120046 ATGTTTCATT
* *
120056 TATATGTTTTACTTTATTTT-TTTTATTATATATG
1 TATATTTTTTACTTT-TTTTAATTTATTATATATG
120090 TATATTTTTTACTTTTTTTAATTTATTAT-TAT-
1 TATATTTTTTACTTTTTTTAATTTATTATATATG
120122 TAATATTATTTTA-TTTTTT
1 T-ATATT-TTTTACTTTTTT
120141 ATTATGTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
32 1 0.02
33 18 0.39
34 27 0.59
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (34 bp):
TATATTTTTTACTTTTTTTAATTTATTATATATG
Found at i:120550 original size:21 final size:22
Alignment explanation
Indices: 120524--120597 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 22
120514 CTTTTATTTA
120524 TTTATTTATT-TTGTTTCTGTT
1 TTTATTTATTCTTGTTTCTGTT
*
120545 TTTATTTAATTCCATTTTTTCT-TT
1 TTTATTT-ATT-C-TTGTTTCTGTT
*
120569 GTT-TTTATTCTTGTTT-TGTT
1 TTTATTTATTCTTGTTTCTGTT
120589 TTTATTTAT
1 TTTATTTAT
120598 GTTACCATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
19 1 0.02
20 9 0.21
21 13 0.30
22 6 0.14
23 3 0.07
24 4 0.09
25 7 0.16
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.74
Consensus pattern (22 bp):
TTTATTTATTCTTGTTTCTGTT
Found at i:124860 original size:99 final size:99
Alignment explanation
Indices: 124684--124879 Score: 322
Period size: 99 Copynumber: 2.0 Consensus size: 99
124674 ATATTTTATA
* * * *
124684 TATACAATAAAGCTTGAGTTATCCCTTTAGAGCAATTGGTTAAACGTCCTGGCTTTATGGATAAG
1 TATACAATAAAGCTTGAGTTATCCCTTAAGAGCAATTGGTTAAACGTCCCGACTTTATGGACAAG
124749 ATTCAGCCAGCCTGATAAAGGTGATTATAATACC
66 ATTCAGCCAGCCTGATAAAGGTGATTATAATACC
124783 TATACAATAAAGCTTGAGTTATCCCTCTAAG-GCAATTGGTTAAACGTCCCGACTTTATGGACAA
1 TATACAATAAAGCTTGAGTTATCCCT-TAAGAGCAATTGGTTAAACGTCCCGACTTTATGGACAA
* *
124847 GATTCAGCTAGCCTGATAAAGTTGATTATAATA
65 GATTCAGCCAGCCTGATAAAGGTGATTATAATA
124880 TTGAGTTGTC
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
99 87 0.97
100 3 0.03
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Consensus pattern (99 bp):
TATACAATAAAGCTTGAGTTATCCCTTAAGAGCAATTGGTTAAACGTCCCGACTTTATGGACAAG
ATTCAGCCAGCCTGATAAAGGTGATTATAATACC
Found at i:126060 original size:121 final size:120
Alignment explanation
Indices: 125886--126234 Score: 547
Period size: 121 Copynumber: 2.9 Consensus size: 120
125876 GGACTCGAAA
*
125886 CAATGCAACCCTTGGATTTCAACTTCATGAC-AAAGGATATCCAATTCAAAGCTCAACTTCACAA
1 CAATGCAACCCTTGGATTTCAACTTCACGACGAAA-GATATCCAATTCAAAGCTCAACTTCACAA
125950 CGAAGGAGCCATCCACGATTTCAACTTCATAACGAAGGATATCGTGCCCACAAGCAG
65 CGAAGGAGCCATCCACGATTTCAACTTCA-AACGAAGGATATCGTGCCCACAAGCAG
* * * *
126007 CAATGCAACCCTTAGATTTCAACTTCACAACGAATGATATACAATTCAAAGCTCAACTTCACAAC
1 CAATGCAACCCTTGGATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCAACTTCACAAC
*
126072 GAAGGAGTCATCCACGATTTCAACTTCAAGACGAAGGATATCGTGCCCACAAGCAG
66 GAAGGAGCCATCCACGATTTCAACTTCAA-ACGAAGGATATCGTGCCCACAAGCAG
* * * *
126128 CAATACAACCCTTGGATTTCAACTTCACGATGAAAGATATCCAATTCAAAGCTCAACTTCCCAAT
1 CAATGCAACCCTTGGATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCAACTTCACAAC
* *
126193 GAAGGAGCCATCCACTATTTCAACTTCACGACGAAGGATATC
66 GAAGGAGCCATCCACGATTTCAACTTCA-AACGAAGGATATC
126235 CAATTCAAAG
Statistics
Matches: 208, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
120 1 0.00
121 205 0.99
122 2 0.01
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (120 bp):
CAATGCAACCCTTGGATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCAACTTCACAAC
GAAGGAGCCATCCACGATTTCAACTTCAAACGAAGGATATCGTGCCCACAAGCAG
Found at i:126259 original size:66 final size:66
Alignment explanation
Indices: 126142--126487 Score: 251
Period size: 66 Copynumber: 5.4 Consensus size: 66
126132 ACAACCCTTG
* ** *
126142 GATTTCAACTTCACGATGAAAGATATCCAATTCAAAGCTCAACTTCCCAATGAAGGAGCCATCCA
1 GATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCAACTTAACAATGAAGGAGACATCCA
126207 CT
66 -T
* * * *
126209 -ATTTCAACTTCACGACGAAGGATATCCAATTCAAAG-TTACTCTTAACAATGAAGGATACATCC
1 GATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCA-ACTTAACAATGAAGGAGACATCC
126272 AT
65 AT
* * * * * *
126274 GATTTCAACTTCATGACGAATGATAT-C--GT----GC-CCAC--AAGCAGT-AATGCA-AC--C
1 GATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCAACTTAA-CAATGAA-GGAGACATC
*
126325 CTT
64 CAT
* * *
126328 GGATTTCAACTTCACGACG-AAGAATATCCAATTCAAAGCTCAACTTCACAACGAATGA-ACCAT
1 -GATTTCAACTTCACGACGAAAG-ATATCCAATTCAAAGCTCAACTTAACAATGAAGGAGA-CAT
*
126391 CCAC
63 CCAT
* * * * * * *
126395 GATTTCAACTTCACGACGAATGATATCTAATTCAAAGCTCAACTTTATAATGAATGAGCCATCAA
1 GATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCAACTTAACAATGAAGGAGACATCCA
126460 T
66 T
* *
126461 GATTTCAACTTTACGATGAAAGATATC
1 GATTTCAACTTCACGACGAAAGATATC
126488 GTGCCTAATG
Statistics
Matches: 217, Mismatches: 39, Indels: 47
0.72 0.13 0.16
Matches are distributed among these distances:
54 5 0.02
55 21 0.10
56 7 0.03
57 5 0.02
58 2 0.01
59 1 0.00
62 2 0.01
63 4 0.02
64 4 0.02
65 8 0.04
66 154 0.71
67 4 0.02
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (66 bp):
GATTTCAACTTCACGACGAAAGATATCCAATTCAAAGCTCAACTTAACAATGAAGGAGACATCCA
T
Found at i:126281 original size:187 final size:185
Alignment explanation
Indices: 126021--126492 Score: 599
Period size: 187 Copynumber: 2.5 Consensus size: 185
126011 GCAACCCTTA
* * * * *
126021 GATTTCAACTTCACAACGAATGATATACAATTCAAAGCTCAACT-TCACAACGAAGGAGTCATCC
1 GATTTCAACTTCACGACGAATGATATCCAATTCAAAG-T-TACTCTTACAATGAAGGA-TCATCC
* *
126085 ACGATTTCAACTTCAAGACGAAGGATATCGTGCCCACAAGCAGCAATACAACCCTTGGATTTCAA
63 ATGATTTCAACTTCAAGACGAAAGATATCGTGCCCACAAGCAGCAATACAACCCTTGGATTTCAA
* * * *
126150 CTTCACGATGAA-AGATATCCAATTCAAAGCTCAACTTCCCAATGAAGGAGCCATCCAC
128 CTTCACGACGAAGA-ATATCCAATTCAAAGCTCAACTTCACAACGAAGGAACCATCCAC
* *
126208 TATTTCAACTTCACGACGAAGGATATCCAATTCAAAGTTACTCTTAACAATGAAGGATACATCCA
1 GATTTCAACTTCACGACGAATGATATCCAATTCAAAGTTACTCTT-ACAATGAAGGAT-CATCCA
* * * *
126273 TGATTTCAACTTCATGACGAATGATATCGTGCCCACAAGCAGTAATGCAACCCTTGGATTTCAAC
64 TGATTTCAACTTCAAGACGAAAGATATCGTGCCCACAAGCAGCAATACAACCCTTGGATTTCAAC
*
126338 TTCACGACGAAGAATATCCAATTCAAAGCTCAACTTCACAACGAATGAACCATCCAC
129 TTCACGACGAAGAATATCCAATTCAAAGCTCAACTTCACAACGAAGGAACCATCCAC
* * * * * *
126395 GATTTCAACTTCACGACGAATGATATCTAATTCAAAGCTCAACT-TTATAATGAATGAGCCATCA
1 GATTTCAACTTCACGACGAATGATATCCAATTCAAAG-T-TACTCTTACAATGAAGGA-TCATCC
* * *
126459 ATGATTTCAACTTTACGATGAAAGATATCGTGCC
63 ATGATTTCAACTTCAAGACGAAAGATATCGTGCC
126493 TAATGGATCG
Statistics
Matches: 249, Mismatches: 29, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
185 3 0.01
186 3 0.01
187 236 0.95
188 4 0.02
189 3 0.01
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (185 bp):
GATTTCAACTTCACGACGAATGATATCCAATTCAAAGTTACTCTTACAATGAAGGATCATCCATG
ATTTCAACTTCAAGACGAAAGATATCGTGCCCACAAGCAGCAATACAACCCTTGGATTTCAACTT
CACGACGAAGAATATCCAATTCAAAGCTCAACTTCACAACGAAGGAACCATCCAC
Found at i:126376 original size:34 final size:34
Alignment explanation
Indices: 126333--126439 Score: 114
Period size: 34 Copynumber: 3.2 Consensus size: 34
126323 CCCTTGGATT
126333 TCAACTTCACGACGAA-GAATATCCAATTCAAAGC
1 TCAACTTCACGACGAATG-ATATCCAATTCAAAGC
* * * **
126367 TCAACTTCACAACGAATGA-A-CC-ATCCACGATT
1 TCAACTTCACGACGAATGATATCCAATTCA-AAGC
*
126399 TCAACTTCACGACGAATGATATCTAATTCAAAGC
1 TCAACTTCACGACGAATGATATCCAATTCAAAGC
126433 TCAACTT
1 TCAACTT
126440 TATAATGAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
31 4 0.07
32 21 0.37
33 2 0.04
34 25 0.44
35 5 0.09
ACGTcount: A:0.38, C:0.27, G:0.10, T:0.24
Consensus pattern (34 bp):
TCAACTTCACGACGAATGATATCCAATTCAAAGC
Found at i:126770 original size:12 final size:12
Alignment explanation
Indices: 126753--126782 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
126743 ATACGCTATG
126753 AACAGTACCATA
1 AACAGTACCATA
*
126765 AACAGTACCATG
1 AACAGTACCATA
126777 AACAGT
1 AACAGT
126783 GAAAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.23, G:0.13, T:0.17
Consensus pattern (12 bp):
AACAGTACCATA
Found at i:127572 original size:31 final size:31
Alignment explanation
Indices: 127550--127720 Score: 288
Period size: 31 Copynumber: 5.5 Consensus size: 31
127540 ATAGATTCCT
* *
127550 AAGAACCTAGGTAAACAGTCCATATGTCCTG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
127581 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
127612 AAGAACATAGGTAAACAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
*
127643 AAGAACATAGGTAAACAGTCCATATGTCCCA
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
* *
127674 AAGAATATAGGTAAAAAGTCCATATGTCCCG
1 AAGAACATAGGTAAACAGTCCATATGTCCCG
*
127705 AATAACATAGGTAAAC
1 AAGAACATAGGTAAAC
127721 CCTCGACCCT
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 131 1.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.20
Consensus pattern (31 bp):
AAGAACATAGGTAAACAGTCCATATGTCCCG
Found at i:129414 original size:85 final size:85
Alignment explanation
Indices: 129263--129451 Score: 243
Period size: 85 Copynumber: 2.2 Consensus size: 85
129253 GGATGTTACA
* * * * *
129263 AGAAAGGTTACCTGTCAACCATGACCCTCGAGTTCAATTACAGTCAGCTCAAAGGCACATCCAAT
1 AGAAGGGTTATCTGTCAACCAAGACCCTCGAGTTCAATTACACTCAGCTCAAAGGCACATCAAAT
* *
129328 TTACAGCATAACTCAAGGTG
66 TTACAGCATAACTAAAGGCG
* ** * *
129348 AGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTTGATTACACTTAGCTTAAAGGCACATCAAAT
1 AGAAGGGTTATCTGTCAACCAAGACCCTCGAGTTCAATTACACTCAGCTCAAAGGCACATCAAAT
* *
129413 TTACATCATAGCTAAAGGCG
66 TTACAGCATAACTAAAGGCG
*
129433 AGAAGGGCTATCTGTCAAC
1 AGAAGGGTTATCTGTCAAC
129452 GAAATACCTT
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (85 bp):
AGAAGGGTTATCTGTCAACCAAGACCCTCGAGTTCAATTACACTCAGCTCAAAGGCACATCAAAT
TTACAGCATAACTAAAGGCG
Found at i:131165 original size:16 final size:17
Alignment explanation
Indices: 131146--131184 Score: 64
Period size: 15 Copynumber: 2.4 Consensus size: 17
131136 TTCTTATTAT
131146 TTTTTATTT-TTATTTA
1 TTTTTATTTATTATTTA
131162 -TTTTATTTATTATTTA
1 TTTTTATTTATTATTTA
131178 TTTTTAT
1 TTTTTAT
131185 CTAATGTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.38
16 7 0.33
17 6 0.29
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTATTTATTATTTA
Found at i:131245 original size:29 final size:29
Alignment explanation
Indices: 131204--131260 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
131194 CATTTATACG
131204 TTATATATATATA-TATACTTTATTTTTTA
1 TTATATATATATATTAT-CTTTATTTTTTA
* *
131233 TTATATATGTATATTATTTTTATTTTTT
1 TTATATATATATATTATCTTTATTTTTT
131261 TACTTTTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 22 0.88
30 3 0.12
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (29 bp):
TTATATATATATATTATCTTTATTTTTTA
Found at i:131249 original size:23 final size:25
Alignment explanation
Indices: 131204--131253 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
131194 CATTTATACG
131204 TTATATATATATATATACTTTATTTT
1 TTATATATATATATATAC-TTATTTT
*
131230 TTAT-TATATATGTATA-TTATTTT
1 TTATATATATATATATACTTATTTT
131253 T
1 T
131254 ATTTTTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 8 0.35
25 11 0.48
26 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (25 bp):
TTATATATATATATATACTTATTTT
Found at i:131365 original size:13 final size:14
Alignment explanation
Indices: 131347--131379 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
131337 TATTACTTTA
131347 TTTTATC-TTTTTG
1 TTTTATCTTTTTTG
131360 TTTTATCTTTTTTG
1 TTTTATCTTTTTTG
131374 TTTTAT
1 TTTTAT
131380 TTATTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (14 bp):
TTTTATCTTTTTTG
Found at i:131413 original size:13 final size:13
Alignment explanation
Indices: 131381--131405 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
131371 TTGTTTTATT
131381 TATTTATATTTTA
1 TATTTATATTTTA
131394 TATTTATATTTT
1 TATTTATATTTT
131406 TTTCTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTATATTTTA
Found at i:131687 original size:5 final size:5
Alignment explanation
Indices: 131677--131824 Score: 85
Period size: 5 Copynumber: 29.6 Consensus size: 5
131667 TTTTTACTAT
* ** *
131677 TTTTA TTTTA TTTTA TTTTA TTTTTG TTTTA TTTT- TGTTCC TGTT- TTTTA
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA T-TTTA TTTTA TTTTA
* ** * *
131727 TTTAA TTCCA TTTT- TTTCT- TTGT- TTTTA TTCTTG TTTTA TTTTA TTTTTTA
1 TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA TT-TTA TTTTA TTTTA --TTTTA
* *
131778 TTTTA TTTT- TTTTA TTTTA TTTT- TTTTG TTTTG TTTTA TTTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA TTT
131825 ATGTTACCAT
Statistics
Matches: 115, Mismatches: 16, Indels: 24
0.74 0.10 0.15
Matches are distributed among these distances:
4 19 0.17
5 77 0.67
6 14 0.12
7 5 0.04
ACGTcount: A:0.12, C:0.04, G:0.05, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:131740 original size:40 final size:41
Alignment explanation
Indices: 131682--131764 Score: 96
Period size: 40 Copynumber: 2.0 Consensus size: 41
131672 ACTATTTTTA
* ** *
131682 TTTTATTTTATTTTATTTTTGT-TTTATTTTTGTTCCTGTT
1 TTTTATTTAATTCCATTTTTGTCTTTATTTTTATTCCTGTT
* * *
131722 TTTTATTTAATTCCATTTTTTTCTTTGTTTTTATTCTTGTT
1 TTTTATTTAATTCCATTTTTGTCTTTATTTTTATTCCTGTT
131763 TT
1 TT
131765 ATTTTATTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
40 18 0.51
41 17 0.49
ACGTcount: A:0.11, C:0.07, G:0.06, T:0.76
Consensus pattern (41 bp):
TTTTATTTAATTCCATTTTTGTCTTTATTTTTATTCCTGTT
Found at i:131777 original size:51 final size:51
Alignment explanation
Indices: 131720--131824 Score: 124
Period size: 51 Copynumber: 2.1 Consensus size: 51
131710 TTTGTTCCTG
*
131720 TTTTTTATTTAATTCCATTT-TTTTCTTTGTTTTTATTCTTGTTTTA-TTTTA
1 TTTTTTATTTAATTCCATTTATTTTATTT-TTTTTATT-TTGTTTTATTTTTA
* *** *
131771 TTTTTTATTTTATTTTTTTTATTTTATTTTTTTTGTTTTGTTTTATTTTTA
1 TTTTTTATTTAATTCCATTTATTTTATTTTTTTTATTTTGTTTTATTTTTA
131822 TTT
1 TTT
131825 ATGTTACCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
50 8 0.17
51 31 0.67
52 7 0.15
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.80
Consensus pattern (51 bp):
TTTTTTATTTAATTCCATTTATTTTATTTTTTTTATTTTGTTTTATTTTTA
Found at i:131819 original size:33 final size:32
Alignment explanation
Indices: 131761--131865 Score: 106
Period size: 33 Copynumber: 3.2 Consensus size: 32
131751 TTTATTCTTG
*
131761 TTTTATTTTATTT-TTTATTTTATTTTT-TTTA
1 TTTTATTTT-TTTGTTTTTTTTATTTTTATTTA
131792 TTTTATTTTTTTTGTTTTGTTTTATTTTTATTTA
1 TTTTA-TTTTTTTGTTTT-TTTTATTTTTATTTA
* *** *
131826 TGTTACCATTTTGTTTATTTTTATTTTTACTTA
1 TTTTATTTTTTTGTTT-TTTTTATTTTTATTTA
131859 TTTTATT
1 TTTTATT
131866 ATTAGTTTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
31 8 0.13
32 7 0.12
33 36 0.60
34 9 0.15
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.78
Consensus pattern (32 bp):
TTTTATTTTTTTGTTTTTTTTATTTTTATTTA
Found at i:132321 original size:6 final size:6
Alignment explanation
Indices: 132310--132352 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
132300 AAACCTTTAC
*
132310 GGTGGA GGTGGA GGTGGA GGTGGA GG-GG- GGTGGG GGTGG- GGTG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTG
132353 TGGAAGAGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
4 2 0.06
5 8 0.23
6 25 0.71
ACGTcount: A:0.09, C:0.00, G:0.74, T:0.16
Consensus pattern (6 bp):
GGTGGA
Found at i:138865 original size:33 final size:33
Alignment explanation
Indices: 138818--138889 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
138808 TCTTTTTCTG
*
138818 GTAATATGTTGTTTTCTCTCTTCAAATAATAAA
1 GTAAGATGTTGTTTTCTCTCTTCAAATAATAAA
138851 GTAAGATGTTGTTTTCTCTCTTCAAATAATAAA
1 GTAAGATGTTGTTTTCTCTCTTCAAATAATAAA
138884 GTAAGA
1 GTAAGA
138890 GTATTTATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (33 bp):
GTAAGATGTTGTTTTCTCTCTTCAAATAATAAA
Found at i:141095 original size:22 final size:22
Alignment explanation
Indices: 141070--141111 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
141060 GTACCGAATC
141070 GCGATTTTGAAACGATCCGATT
1 GCGATTTTGAAACGATCCGATT
*
141092 GCGATTTTGAAATGATCCGA
1 GCGATTTTGAAACGATCCGA
141112 ACGCGTTCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (22 bp):
GCGATTTTGAAACGATCCGATT
Found at i:148620 original size:27 final size:27
Alignment explanation
Indices: 148583--148647 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
148573 AGAGGCTGCT
*
148583 GCAGCAGCTGCTCGAGCAGTTGAAGAA
1 GCAGAAGCTGCTCGAGCAGTTGAAGAA
148610 GCAGAAGCTGCTCGAGCAGTTGAAGAA
1 GCAGAAGCTGCTCGAGCAGTTGAAGAA
148637 GCAGAAGCTGC
1 GCAGAAGCTGC
148648 AATTGCAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.31, C:0.22, G:0.34, T:0.14
Consensus pattern (27 bp):
GCAGAAGCTGCTCGAGCAGTTGAAGAA
Found at i:149517 original size:62 final size:62
Alignment explanation
Indices: 149420--149544 Score: 214
Period size: 62 Copynumber: 2.0 Consensus size: 62
149410 TAGAAATGAA
* *
149420 TTGATTTGATGTTGTTTCCGTGTCAAATCTGTTGTATAATTAGATCTGGATCTTTATACTTC
1 TTGATTTGATGTAGTTTCCGTGTCAAATCTGTTGTATAATTAGATATGGATCTTTATACTTC
* *
149482 TTGATTTGCTGTAGTTTCTGTGTCAAATCTGTTGTATAATTAGATATGGATCTTTATACTTC
1 TTGATTTGATGTAGTTTCCGTGTCAAATCTGTTGTATAATTAGATATGGATCTTTATACTTC
149544 T
1 T
149545 ACAAGCAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.49
Consensus pattern (62 bp):
TTGATTTGATGTAGTTTCCGTGTCAAATCTGTTGTATAATTAGATATGGATCTTTATACTTC
Found at i:154184 original size:38 final size:38
Alignment explanation
Indices: 154142--154256 Score: 212
Period size: 38 Copynumber: 3.0 Consensus size: 38
154132 ATAAGTAACA
*
154142 TTTATTTATTATTGTTTTCAATCTTACAATTATATTCT
1 TTTATTTATTATTGTTTTCAATCTTACAATTAGATTCT
*
154180 TTTATTTATTATTGTTTTTAATCTTACAATTAGATTCT
1 TTTATTTATTATTGTTTTCAATCTTACAATTAGATTCT
154218 TTTATTTATTATTGTTTTCAATCTTACAATTAGATTCT
1 TTTATTTATTATTGTTTTCAATCTTACAATTAGATTCT
154256 T
1 T
154257 ACTTTTTATA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 74 1.00
ACGTcount: A:0.26, C:0.10, G:0.04, T:0.60
Consensus pattern (38 bp):
TTTATTTATTATTGTTTTCAATCTTACAATTAGATTCT
Found at i:154520 original size:13 final size:13
Alignment explanation
Indices: 154502--154531 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
154492 TTTCTGTTTC
*
154502 CAAATTTGAGTAG
1 CAAATTTAAGTAG
154515 CAAATTTAAGTAG
1 CAAATTTAAGTAG
154528 CAAA
1 CAAA
154532 AAACAAGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.27
Consensus pattern (13 bp):
CAAATTTAAGTAG
Found at i:164265 original size:19 final size:19
Alignment explanation
Indices: 164241--164277 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
164231 AGTATGTTCA
164241 GGGGGTATCGATTCCCCTG
1 GGGGGTATCGATTCCCCTG
164260 GGGGGTATCGATTCCCCT
1 GGGGGTATCGATTCCCCT
164278 CTAAATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.27, G:0.35, T:0.27
Consensus pattern (19 bp):
GGGGGTATCGATTCCCCTG
Found at i:164903 original size:31 final size:31
Alignment explanation
Indices: 164865--165018 Score: 274
Period size: 31 Copynumber: 5.0 Consensus size: 31
164855 GGGTCGAGGG
164865 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
164896 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
164927 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
164958 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
164989 TTACCTAGGTTCTTCGGAATC-TATGGACTG
1 TTACCTATGTTCTTCGGGA-CATATGGACTG
165019 GTCCTTCGGG
Statistics
Matches: 120, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
31 119 0.99
32 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:170296 original size:16 final size:16
Alignment explanation
Indices: 170275--170311 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
170265 GTATTGGATT
170275 GCAATACTTCGACCAA
1 GCAATACTTCGACCAA
*
170291 GCAATACTTCGATCAA
1 GCAATACTTCGACCAA
170307 GCAAT
1 GCAAT
170312 GCTTTCCACG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.22
Consensus pattern (16 bp):
GCAATACTTCGACCAA
Found at i:170520 original size:4 final size:4
Alignment explanation
Indices: 170511--170538 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
170501 GTTCTTTATG
170511 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT
170539 GAGATCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:171797 original size:16 final size:16
Alignment explanation
Indices: 171778--171810 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
171768 CGAATGGATC
171778 TCGGTTCTTTTTTTCT
1 TCGGTTCTTTTTTTCT
171794 TCGGTTCTTTTTTTCT
1 TCGGTTCTTTTTTTCT
171810 T
1 T
171811 TTATTGATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.18, G:0.12, T:0.70
Consensus pattern (16 bp):
TCGGTTCTTTTTTTCT
Found at i:172298 original size:3 final size:3
Alignment explanation
Indices: 172285--172346 Score: 56
Period size: 3 Copynumber: 20.7 Consensus size: 3
172275 ATAATATGTA
** *
172285 AAT AA- AAT AAT AAT AAT AAT GCT AAT AAT AAT AATT AA- AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
*
172329 GAT AAT AAT AAT ATAT AA
1 AAT AAT AAT AAT A-AT AA
172347 AAAAGACCCG
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
2 4 0.09
3 37 0.79
4 6 0.13
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Done.