Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008339.1 Hibiscus syriacus cultivar Beakdansim tig00111061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1048908
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 7
Found at i:834604 original size:34 final size:32
Alignment explanation
Indices: 834565--834634 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
834555 TTTTGTAAAG
* *
834565 GGGAAAGGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
834599 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
834631 GGGA
1 GGGA
834635 GTTGTAAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:839284 original size:45 final size:47
Alignment explanation
Indices: 839212--839321 Score: 152
Period size: 45 Copynumber: 2.3 Consensus size: 47
839202 CCATGCTTTG
*
839212 TTATTCACAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGC-
1 TTATTCAAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
* *
839258 TTATTCAAAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCA
1 TTATTCAAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
*
839304 TTTATTCGAAAAACGAAA
1 -TTATTC-AAAAAAGAAA
839322 ATAAATGACT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
45 28 0.50
46 14 0.25
47 6 0.11
48 8 0.14
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (47 bp):
TTATTCAAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
Found at i:843706 original size:40 final size:40
Alignment explanation
Indices: 843654--843741 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
843644 TGTGAATAGT
*
843654 AAAAATCGCAACGCGAATAGTAAAATCGCAACGCGAATTG
1 AAAAATCGCAACGCGAATAGAAAAATCGCAACGCGAATTG
* * *
843694 AAAAATTGCAACGCGAATTGAAAAATCGCAACGCGAATTT
1 AAAAATCGCAACGCGAATAGAAAAATCGCAACGCGAATTG
843734 AGAAAATC
1 A-AAAATC
843742 ATAAAATCGC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 37 0.88
41 5 0.12
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.17
Consensus pattern (40 bp):
AAAAATCGCAACGCGAATAGAAAAATCGCAACGCGAATTG
Found at i:843732 original size:20 final size:20
Alignment explanation
Indices: 843654--843732 Score: 131
Period size: 20 Copynumber: 4.0 Consensus size: 20
843644 TGTGAATAGT
*
843654 AAAAATCGCAACGCGAATAG
1 AAAAATCGCAACGCGAATTG
*
843674 TAAAATCGCAACGCGAATTG
1 AAAAATCGCAACGCGAATTG
*
843694 AAAAATTGCAACGCGAATTG
1 AAAAATCGCAACGCGAATTG
843714 AAAAATCGCAACGCGAATT
1 AAAAATCGCAACGCGAATT
843733 TAGAAAATCA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.16
Consensus pattern (20 bp):
AAAAATCGCAACGCGAATTG
Found at i:844150 original size:21 final size:21
Alignment explanation
Indices: 844095--844202 Score: 136
Period size: 21 Copynumber: 5.4 Consensus size: 21
844085 CATATAGATT
*
844095 CGTTGCGA-TTTTAC--GTCA
1 CGTTGCGATTTTTACTATTCA
*
844113 CGTTGCGA-TTGTACTATTCA
1 CGTTGCGATTTTTACTATTCA
*
844133 CATTGCGATTTTTACTATTCA
1 CGTTGCGATTTTTACTATTCA
* *
844154 CATTACGATTTTTACTATTCA
1 CGTTGCGATTTTTACTATTCA
844175 CGTTGCGATTTTT-CTATTCA
1 CGTTGCGATTTTTACTATTCA
844195 CGTTGCGA
1 CGTTGCGA
844203 AATTAGAATT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
18 13 0.16
20 25 0.31
21 42 0.52
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (21 bp):
CGTTGCGATTTTTACTATTCA
Found at i:844234 original size:20 final size:20
Alignment explanation
Indices: 844211--844288 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 20
844201 GAAATTAGAA
844211 TTCGTGTTGCGAATTTGACT
1 TTCGTGTTGCGAATTTGACT
*
844231 TTCGCGTTCTCGTTGAGAATTTGACT
1 TT--CG---T-GTTGCGAATTTGACT
*
844257 TTCGCGTTGCGAATTTGAC-
1 TTCGTGTTGCGAATTTGACT
844276 TTCTGTGTTGCGA
1 TTC-GTGTTGCGA
844289 TTTACAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
19 3 0.06
20 23 0.49
22 2 0.04
24 2 0.04
25 1 0.02
26 16 0.34
ACGTcount: A:0.14, C:0.18, G:0.26, T:0.42
Consensus pattern (20 bp):
TTCGTGTTGCGAATTTGACT
Found at i:845431 original size:20 final size:19
Alignment explanation
Indices: 845382--845496 Score: 81
Period size: 20 Copynumber: 5.8 Consensus size: 19
845372 ATAATCAACG
* *
845382 AATTCGCAACTCG-ATTTCG
1 AATTCGCAACACGAATTT-A
845401 AATTCGCAACACGAACTTTA
1 AATTCGCAACACGAA-TTTA
* *
845421 ATTTCGTAACAC-AATTTCTA
1 AATTCGCAACACGAA-TT-TA
845441 AATTCGCAACACGAATTTGA
1 AATTCGCAACACGAATTT-A
* * *
845461 AATTCGTAACACAGAAGTCA
1 AATTCGCAACAC-GAATTTA
* *
845481 AATTTGCAACTCGAAT
1 AATTCGCAACACGAAT
845497 GACATTATTT
Statistics
Matches: 76, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
19 20 0.26
20 47 0.62
21 9 0.12
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (19 bp):
AATTCGCAACACGAATTTA
Found at i:845484 original size:40 final size:39
Alignment explanation
Indices: 845401--845496 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 39
845391 CTCGATTTCG
* **
845401 AATTCGCAACACGAACTTTAATTTCGTAACACAATTTCTA
1 AATTCGCAACACGAA-TTTAAATTCGTAACACAAAGTCTA
845441 AATTCGCAACACGAATTTGAAATTCGTAACACAGAAGTC-A
1 AATTCGCAACACGAATTT-AAATTCGTAACACA-AAGTCTA
* *
845481 AATTTGCAACTCGAAT
1 AATTCGCAACACGAAT
845497 GACATTATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.06
40 43 0.88
41 3 0.06
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (39 bp):
AATTCGCAACACGAATTTAAATTCGTAACACAAAGTCTA
Found at i:845693 original size:20 final size:19
Alignment explanation
Indices: 845602--845693 Score: 53
Period size: 20 Copynumber: 4.8 Consensus size: 19
845592 AGCGCGTTTC
* *
845602 AATTTCGCAACGCGAATTTT
1 AATTTCACAACAC-AATTTT
* * *
845622 ATTTTCGCAACTCAA-TTT
1 AATTTCACAACACAATTTT
* *
845640 -CTTTCCCAACACGAATTTT
1 AATTTCACAACAC-AATTTT
** *
845659 AATTTTGCAAAACAACTTTT
1 AATTTCACAACACAA-TTTT
845679 AATTTCACAACACAA
1 AATTTCACAACACAA
845694 ATGTAAATAG
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
17 9 0.16
18 5 0.09
19 7 0.12
20 35 0.62
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.36
Consensus pattern (19 bp):
AATTTCACAACACAATTTT
Found at i:847230 original size:20 final size:20
Alignment explanation
Indices: 847205--847242 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
847195 TCAAAAATGA
847205 AATTCGCAA-GTCGAATTTTG
1 AATTCGCAACG-CGAATTTTG
847225 AATTCGCAACGCGAATTT
1 AATTCGCAACGCGAATTT
847243 CTTTTTCGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (20 bp):
AATTCGCAACGCGAATTTTG
Found at i:847659 original size:22 final size:22
Alignment explanation
Indices: 847621--847689 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 22
847611 TGTGAGAGAT
* *
847621 GGAGATGGAG--GGGTGTCACC
1 GGAGATGGAGACGGATGTCGCC
* *
847641 GGATATGGGGACGGATGTCGCC
1 GGAGATGGAGACGGATGTCGCC
847663 GGAGATGGAGACGGATGTCGCC
1 GGAGATGGAGACGGATGTCGCC
847685 GGAGA
1 GGAGA
847690 GAGTGAGAGA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.20
22 33 0.80
ACGTcount: A:0.22, C:0.16, G:0.48, T:0.14
Consensus pattern (22 bp):
GGAGATGGAGACGGATGTCGCC
Found at i:847820 original size:20 final size:20
Alignment explanation
Indices: 847774--847988 Score: 84
Period size: 20 Copynumber: 10.7 Consensus size: 20
847764 ATTTATATTT
* *
847774 GTGTTGAGAAATTAAAA-GC
1 GTGTTGCGAAATTAAAATTC
*
847793 TGTTTTGCGAAATTAAAATTC
1 -GTGTTGCGAAATTAAAATTC
*
847814 GTGTTGCG-AATTCAAAAATC
1 GTGTTGCGAAATT-AAAATTC
* * * *
847834 GAGTTGCCAAAATAAATTTC
1 GTGTTGCGAAATTAAAATTC
** * **
847854 GCATTGC-ATAATTGAAACGC
1 GTGTTGCGA-AATTAAAATTC
*
847874 GCT-TTGCG-AATTAGAAAATC
1 G-TGTTGCGAAATTA-AAATTC
* *** *
847894 TTGTTGCGAAAAGGAAATTT
1 GTGTTGCGAAATTAAAATTC
*
847914 GTGTTGC-AAATTTAAAAATC
1 GTGTTGCGAAA-TTAAAATTC
* *
847934 GAGTTGCGAAA-AAGAAATTC
1 GTGTTGCGAAATTA-AAATTC
* *
847954 GTGTTGCGAAATTGTCAAATTT
1 GTGTTGCGAAA-T-TAAAATTC
847976 GTGTTGCGAAATT
1 GTGTTGCGAAATT
847989 GTCAAATTCA
Statistics
Matches: 140, Mismatches: 40, Indels: 30
0.67 0.19 0.14
Matches are distributed among these distances:
19 14 0.10
20 100 0.71
21 10 0.07
22 16 0.11
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
GTGTTGCGAAATTAAAATTC
Found at i:847979 original size:22 final size:22
Alignment explanation
Indices: 847948--848027 Score: 101
Period size: 22 Copynumber: 3.7 Consensus size: 22
847938 TGCGAAAAAG
847948 AAATTCGTGTTGCGAAATTGTC
1 AAATTCGTGTTGCGAAATTGTC
*
847970 AAATTTGTGTTGCGAAATTGTC
1 AAATTCGTGTTGCGAAATTGTC
* * *
847992 AAATTCATGTTGTG-AATT-CC
1 AAATTCGTGTTGCGAAATTGTC
*
848012 AAATTCGAGTTGCGAA
1 AAATTCGTGTTGCGAA
848028 TTTGGAAACT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
20 12 0.24
21 5 0.10
22 32 0.65
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (22 bp):
AAATTCGTGTTGCGAAATTGTC
Found at i:849131 original size:20 final size:20
Alignment explanation
Indices: 849083--849134 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
849073 TTTTCCGACT
*
849083 ATCGCAATACGAATATGTAA
1 ATCGCAATGCGAATATGTAA
*
849103 ATCGCAATGCGAATATGTGA
1 ATCGCAATGCGAATATGTAA
849123 ATCGCAATGCGA
1 ATCGCAATGCGA
849135 TTCTGACTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:849146 original size:20 final size:20
Alignment explanation
Indices: 849123--849210 Score: 140
Period size: 20 Copynumber: 4.4 Consensus size: 20
849113 GAATATGTGA
*
849123 ATCGCAATGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
849143 ATCGCAATGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
849163 ATCGCAACGAGATTCTGACT
1 ATCGCAACGCGATTCTGACT
849183 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
*
849203 GTCGCAAC
1 ATCGCAAC
849211 ACTGAATTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:849147 original size:40 final size:40
Alignment explanation
Indices: 849103--849210 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 40
849093 GAATATGTAA
* * *
849103 ATCGCAATGCGAATATGTGA-ATCGCAATGCGATTCTGACT
1 ATCGCAATGCGAAT-TCTGACATCGCAACGAGATTCTGACT
849143 ATCGCAATGCG-ATTCTGACTATCGCAACGAGATTCTGACT
1 ATCGCAATGCGAATTCTGAC-ATCGCAACGAGATTCTGACT
* *
849183 ATCGCAACGCG-ATTCTGACTGTCGCAAC
1 ATCGCAATGCGAATTCTGAC-ATCGCAAC
849211 ACTGAATTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 4 0.07
39 2 0.03
40 55 0.90
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
ATCGCAATGCGAATTCTGACATCGCAACGAGATTCTGACT
Found at i:850078 original size:24 final size:24
Alignment explanation
Indices: 850046--850123 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
850036 TATTCGAAAT
850046 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
850070 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
850094 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
850118 TTTGAT
1 TTTGAT
850124 GATGTTTCAG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:852404 original size:18 final size:18
Alignment explanation
Indices: 852381--852415 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
852371 AGAAAAAGGC
*
852381 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
852399 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
852416 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:852727 original size:140 final size:140
Alignment explanation
Indices: 852475--852744 Score: 522
Period size: 140 Copynumber: 1.9 Consensus size: 140
852465 AAACGTTGTA
852475 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
852540 TGATCTGTTCAGTTGTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
852605 TATGTGTATT
131 TATGTGTATT
852615 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
852680 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
852745 CGCAACGCGA
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.42
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:852740 original size:20 final size:20
Alignment explanation
Indices: 852715--852770 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
852705 TTACACATTC
852715 ATTTGAATATCGCAACGCGA
1 ATTTGAATATCGCAACGCGA
*
852735 ATTTGACTATCGCAACGCGA
1 ATTTGAATATCGCAACGCGA
*
852755 ATTTGATTATCGCAAC
1 ATTTGAATATCGCAAC
852771 TCAAAATTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (20 bp):
ATTTGAATATCGCAACGCGA
Found at i:853324 original size:15 final size:15
Alignment explanation
Indices: 853297--853338 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
853287 CAGAATTTGG
853297 ATATATG-TATTCAA
1 ATATATGTTATTCAA
*
853311 GTATATGTTATTCAA
1 ATATATGTTATTCAA
*
853326 ATATGTGTTATTC
1 ATATATGTTATTC
853339 GGATCAGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 6 0.25
15 18 0.75
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATATGTTATTCAA
Found at i:854891 original size:19 final size:19
Alignment explanation
Indices: 854830--854893 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 19
854820 TCATTACTGC
*
854830 TCATACAGTAGCAATACTAT
1 TCATACAGTA-CAGTACTAT
* *
854850 TTATACATTACATGTACTAT
1 TCATACAGTACA-GTACTAT
*
854870 TCATACAGTACAGTAATAT
1 TCATACAGTACAGTACTAT
854889 TCATA
1 TCATA
854894 AAAACATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
19 13 0.35
20 24 0.65
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (19 bp):
TCATACAGTACAGTACTAT
Found at i:855152 original size:18 final size:19
Alignment explanation
Indices: 855105--855161 Score: 71
Period size: 18 Copynumber: 2.9 Consensus size: 19
855095 ATGTTTAATG
*
855105 AAAAATATATCAATTGTTA
1 AAAAAGATATCAATTGTTA
855124 ACAAAAGGATATCAATTGTT-
1 A-AAAA-GATATCAATTGTTA
*
855144 AAAAAGATACCAATTGTT
1 AAAAAGATATCAATTGTT
855162 GTAAAATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 12 0.35
19 5 0.15
20 5 0.15
21 12 0.35
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (19 bp):
AAAAAGATATCAATTGTTA
Found at i:856998 original size:64 final size:66
Alignment explanation
Indices: 856928--857068 Score: 196
Period size: 65 Copynumber: 2.2 Consensus size: 66
856918 TTTTTCCTTT
* * * * * *
856928 AGGGGGTATTGATACCCTACT-GTGGGTATCGGTACCCTTATGACATTCTGTAATTTT-TCGTTC
1 AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTC
856991 A
66 A
*
856992 AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTT
1 AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTC
857057 A
66 A
*
857058 AGAGGGTATCG
1 AGGGGGTATCG
857069 GTACCTGTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 19 0.28
65 32 0.48
66 16 0.24
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (66 bp):
AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTC
A
Found at i:860812 original size:23 final size:23
Alignment explanation
Indices: 860786--860869 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
860776 CTCGTATAAA
860786 TGCACCAAAGTGCCACGTAGAAT
1 TGCACCAAAGTGCCACGTAGAAT
*
860809 TGCACTAAAGTGCCACGTAGAAT
1 TGCACCAAAGTGCCACGTAGAAT
* *
860832 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCAAAGTGCCACGTAGAAT
*
860855 TGCACCGAAGTGCCA
1 TGCACCAAAGTGCCA
860870 TATAAAATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 56 1.00
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (23 bp):
TGCACCAAAGTGCCACGTAGAAT
Found at i:864438 original size:19 final size:20
Alignment explanation
Indices: 864393--864443 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
864383 AGCAGTGTTG
*
864393 ATACTATTTATACAATATCA
1 ATACTATTCATACAATATCA
* *
864413 TTACTATTCATACAGTA-CA
1 ATACTATTCATACAATATCA
864432 ATACTATTCATA
1 ATACTATTCATA
864444 AAAACATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (20 bp):
ATACTATTCATACAATATCA
Found at i:870074 original size:31 final size:32
Alignment explanation
Indices: 870036--870098 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
870026 TTCGAATAGT
* *
870036 ATGAATGATATATA-TTTTCAAGTCGGGTCGG
1 ATGAATGATATAAAGTTTTCAAGTAGGGTCGG
* *
870067 ATGAATGATGTAAAGTTTTCAGGTAGGGTCGG
1 ATGAATGATATAAAGTTTTCAAGTAGGGTCGG
870099 GTTGGCCGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 12 0.44
32 15 0.56
ACGTcount: A:0.29, C:0.08, G:0.30, T:0.33
Consensus pattern (32 bp):
ATGAATGATATAAAGTTTTCAAGTAGGGTCGG
Found at i:872458 original size:13 final size:13
Alignment explanation
Indices: 872440--872469 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
872430 TGCATATAGT
872440 TTTATTTATCTTA
1 TTTATTTATCTTA
*
872453 TTTATTTATTTTA
1 TTTATTTATCTTA
872466 TTTA
1 TTTA
872470 ATGTAAGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTATTTATCTTA
Found at i:882281 original size:21 final size:21
Alignment explanation
Indices: 882235--882278 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 21
882225 GCCCTAAATT
882235 GAAAAAAGAAAAAGAAAAAGA
1 GAAAAAAGAAAAAGAAAAAGA
882256 GAAAAAAGAACGAAAGAAAAAGA
1 GAAAAAAGAA--AAAGAAAAAGA
882279 AAAGAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.48
23 11 0.52
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.00
Consensus pattern (21 bp):
GAAAAAAGAAAAAGAAAAAGA
Found at i:882285 original size:15 final size:15
Alignment explanation
Indices: 882239--882285 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
882229 TAAATTGAAA
882239 AAAGAAAAAGAAAA-
1 AAAGAAAAAGAAAAG
* *
882253 AGAGAAAAA-AGAACG
1 AAAGAAAAAGA-AAAG
882268 AAAGAAAAAGAAAAG
1 AAAGAAAAAGAAAAG
882283 AAA
1 AAA
882286 ATAAGGTGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
13 1 0.04
14 10 0.38
15 14 0.54
16 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAAAG
Found at i:882360 original size:16 final size:16
Alignment explanation
Indices: 882339--882370 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
882329 ACAAGGATGG
882339 GTCCAAGTTGAAAACC
1 GTCCAAGTTGAAAACC
882355 GTCCAAGTTGAAAACC
1 GTCCAAGTTGAAAACC
882371 CGGAAAGGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (16 bp):
GTCCAAGTTGAAAACC
Found at i:883893 original size:106 final size:106
Alignment explanation
Indices: 883410--884144 Score: 969
Period size: 105 Copynumber: 6.9 Consensus size: 106
883400 TTGTCAACAA
* *
883410 CAATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
883475 TTCACGACGAAGGGACCGCTGGTTGTCAAC-AACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
883515 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* *
883580 TTCACGATGAAGGGACCGCTGGTTGGCAAC-AACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
** * *
883620 CAATTTTGGAGCCAATTTCAACTTCACAGTGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
883685 TTCACGACGAAGGGACCGCTGGTTGTCAAC-AACAACTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* *
883725 CAATTTCAGAGCCAATTTTAACTTCACAGCGAAGGATATTGGACTCCAGACAATGCAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
*
883790 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * *
883831 CAATTTCAGAGCCAATTTCAACTTCACAGCAAAGGATATTGGACTCGAGACAACACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * * * **
883896 TTCACAACGAAGGGACGGCTGGTTGTCAATAAATAACTTTT
66 TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* ** * * * ** * *
883937 CAGTTTCA-CCCGCGATTTCAACTCCAC-GACGGAGGATATCGTATCACTCGAGACAACACAAGT
1 CAATTTCAGAGC-CAATTTCAACTTCACAG-CGAAGGATAT--T-GGACTCCAGACAACGCAAGT
* * * * *
884000 TCAACTTTACAATGAAGGGACGGCTGGTTGTCAACAAACAATTTCC
61 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
* * * * * * *
884046 CAATTTCAGAGCTAATTTCAACTTCACAGCGAATGATATTGGAATCAAGGCAGCACAAGTTCAAC
1 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
* * *
884111 TTCACAATGAAGGGACGGCT-GTCTGTCAACAAAC
66 TTCACGACGAAGGGACCGCTGGT-TGTCAACAAAC
884145 TTTTGGTTTT
Statistics
Matches: 563, Mismatches: 58, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
105 295 0.52
106 180 0.32
107 1 0.00
108 1 0.00
109 84 0.15
110 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (106 bp):
CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAAC
TTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCC
Found at i:885982 original size:13 final size:13
Alignment explanation
Indices: 885964--885993 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
885954 TGCATATACT
885964 TTTATTTATCTTA
1 TTTATTTATCTTA
*
885977 TTTATTTATTTTA
1 TTTATTTATCTTA
885990 TTTA
1 TTTA
885994 ATGTAAGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTATTTATCTTA
Found at i:887264 original size:21 final size:20
Alignment explanation
Indices: 887240--887299 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
887230 AAAATAATGA
*
887240 AAATAAATAAATAGTATAAAT
1 AAATATATAAATA-TATAAAT
*
887261 AAATATA-AAATATATATAT
1 AAATATATAAATATATAAAT
* *
887280 ATATATATAAATATAAAAAT
1 AAATATATAAATATATAAAT
887300 GTATGTATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
19 12 0.36
20 15 0.45
21 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
AAATATATAAATATATAAAT
Found at i:887298 original size:28 final size:27
Alignment explanation
Indices: 887239--887320 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
887229 TAAAATAATG
* * *
887239 AAAATAAATAAATAGTATAAATAAATAT
1 AAAATATATATATA-TATATATAAATAT
887267 AAAATATATATATATATATATAAATAT
1 AAAATATATATATATATATATAAATAT
* *
887294 AAAA-ATGTATGTATAATATAATAAATA
1 AAAATATATATATAT-ATAT-ATAAATA
887321 CTAACTAGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 8 0.17
27 20 0.43
28 19 0.40
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (27 bp):
AAAATATATATATATATATATAAATAT
Found at i:888862 original size:83 final size:83
Alignment explanation
Indices: 888565--888913 Score: 380
Period size: 83 Copynumber: 4.2 Consensus size: 83
888555 ATTTTGATGG
* * * * * * * *
888565 CAGATAACCCTTCTCGTCTTGAGTTATACTGTAAATTTGATTTGCCTCT-GAGTTGAATGTAATC
1 CAGATAGCCCTTCTAGCCTTGAGTTATGCTGCAAA--TGATGTGCCT-TGGAGTTGAGTGTAGTC
*
888629 GAACTCGAAGGTCTTTGATGA
63 GAACTCGAAGGTCTTTGTTGA
* * *
888650 CAGATCA-CCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGCCTTGGAGTTAAGCGTAGTCGA
1 CAGAT-AGCCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGTTGAGTGTAGTCGA
* *
888714 ACTTGAAGGTCTTTTGTTGG
65 ACTCGAAGGTC-TTTGTTGA
* * ** * *
888734 CAAATAGCCCTTCTTGCCTTGAGTTATTTTGCAAATGATGTGCCTTGGAGCTGAGTGTAGTCAAA
1 CAGATAGCCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGTTGAGTGTAGTCGAA
*
888799 CTCGAAGGTCTTTGCTGA
66 CTCGAAGGTCTTTGTTGA
* * * * * *
888817 CAGATAGTCCTTCTAGCCTTGAGCTATGCTGTAAATGATGCGCCTTGGAGTTGAATGTAATCGAA
1 CAGATAGCCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGTTGAGTGTAGTCGAA
888882 CTCGAAGGTCTTTGTTGA
66 CTCGAAGGTCTTTGTTGA
888900 CAGATA-CTCCTTCT
1 CAGATAGC-CCTTCT
888914 TTGAGTTGGA
Statistics
Matches: 221, Mismatches: 38, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
82 1 0.00
83 121 0.55
84 69 0.31
85 29 0.13
86 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (83 bp):
CAGATAGCCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCTTGGAGTTGAGTGTAGTCGAA
CTCGAAGGTCTTTGTTGA
Found at i:889283 original size:106 final size:106
Alignment explanation
Indices: 889109--889768 Score: 954
Period size: 106 Copynumber: 6.3 Consensus size: 106
889099 ATCCCTCCGC
* * * * *
889109 GTGAAGTTGAAATTGGTTCTGGAACTGGG-ATTTGTTTGTTGACAACCAG-TGTCCCTTCGTTGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
889172 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
66 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
* * *
889213 GTGAAGATGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
*
889278 GAAGTTGAACTTGTGTTGTCCCGAGTCCAATATCCTTCGCT
66 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
* * * * *
889319 GTGAAGTTAAAATTAGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
* * *
889384 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGAT
66 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
*
889425 GT-AAG-TGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCA-TCGTCCCTTCGTTGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
*
889487 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCATTTCGCT
66 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATC-CTTCGCT
* * *
889529 GTGAAGTTGAAATTGGCTCTGAAA-TGGGAAGTT-TTTGTTGACAACCAGCGGTCCCTTCGTCGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
** *
889592 GAAGTTGAACTTACGTTGTCTGGAGTCCAATATCC-T--C-
66 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
* *
889629 GTGAAGTTGAAATTGGCTCTG-AATTGGGAAATTGTTTGTTGACAACCAG-CAT-CCTTCATTGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
889691 GAAGTTGAACTTGTGTTGTCTCGAGTCC-ATATCCTTCGCT
66 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
889731 GTGAAGTTGAAATTGGCTCTAGAAATTGGGAAATTGTT
1 GTGAAGTTGAAATTGGCTCT-GAAATTGGGAAATTGTT
889769 ATAAGTTGAA
Statistics
Matches: 496, Mismatches: 46, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
98 6 0.01
99 36 0.07
100 30 0.06
101 17 0.03
102 20 0.04
103 46 0.09
104 99 0.20
105 76 0.15
106 166 0.33
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (106 bp):
GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
Found at i:889529 original size:210 final size:209
Alignment explanation
Indices: 889109--889768 Score: 998
Period size: 210 Copynumber: 3.2 Consensus size: 209
889099 ATCCCTCCGC
* * * * * *
889109 GTGAAGTTGAAATTGGTTCTGGAACTGGG-ATTTGTTTGTTGACAACCAG-TGTCCCTTCGTTGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGT
* *
889172 GAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGGCTCTGAAA
66 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG-TGT-AAGATGAAATTGGCTCTGAAA
* * *
889237 TTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCCCGA
129 TTGGGAAATTGTTTGTTGACAACCA-CCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGA
889302 GTCCAATATCCTTCGCT
193 GTCCAATATCCTTCGCT
* * *
889319 GTGAAGTTAAAATTAGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGT
889384 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTAAG-TGAAATTGGCTCTGAAAT
66 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG-TGTAAGATGAAATTGGCTCTGAAAT
*
889448 TGGGAAATTGTTTGTTGACAACCATCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
130 TGGGAAATTGTTTGTTGACAACCACCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
*
889513 CCAATATCATTTCGCT
195 CCAATATC-CTTCGCT
*
889529 GTGAAGTTGAAATTGGCTCTGAAA-TGGGAAGTT-TTTGTTGACAACCAGCGGTCCCTTCGTCGT
1 GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGT
* *
889592 GAAGTTGAACTTACGTTGTCTGGAGTCCAATATCC-TCGTG-AAGTTGAAATTGGCTCTG-AATT
66 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTGTAAGATGAAATTGGCTCTGAAATT
* * *
889654 GGGAAATTGTTTGTTGACAACCAGCAT-CCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTC
131 GGGAAATTGTTTGTTGACAACCACCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTC
889718 C-ATATCCTTCGCT
196 CAATATCCTTCGCT
889731 GTGAAGTTGAAATTGGCTCTAGAAATTGGGAAATTGTT
1 GTGAAGTTGAAATTGGCTCT-GAAATTGGGAAATTGTT
889769 ATAAGTTGAA
Statistics
Matches: 416, Mismatches: 27, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
202 26 0.06
203 9 0.02
204 45 0.11
205 34 0.08
206 16 0.04
207 3 0.01
208 63 0.15
209 55 0.13
210 92 0.22
211 21 0.05
212 52 0.12
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (209 bp):
GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGT
GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTGTAAGATGAAATTGGCTCTGAAATT
GGGAAATTGTTTGTTGACAACCACCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTC
CAATATCCTTCGCT
Found at i:889804 original size:36 final size:37
Alignment explanation
Indices: 889734--889804 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
889724 CTTCGCTGTG
*
889734 AAGTTGAAATTGGCTCTAGAAATTGGGAAATTGTTAT
1 AAGTTGAAATTGGCTCTAGAAACTGGGAAATTGTTAT
* * *
889771 AAGTTGAAATTGGTTCT-GGAACTGGGAATTTGTT
1 AAGTTGAAATTGGCTCTAGAAACTGGGAAATTGTT
889805 TGTTGACAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 14 0.47
37 16 0.53
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (37 bp):
AAGTTGAAATTGGCTCTAGAAACTGGGAAATTGTTAT
Found at i:889848 original size:142 final size:139
Alignment explanation
Indices: 889632--889910 Score: 443
Period size: 142 Copynumber: 2.0 Consensus size: 139
889622 TATCCTCGTG
*
889632 AAGTTGAAATTGGCTCTGAATTGGGAAATTGTTTGTTGACAACCAGCATCCTTCATTGTGAAGTT
1 AAGTTGAAATTGGCTCTGAACTGGGAAATTGTTTGTTGACAACCAGCATCCTTCATTGTGAAGTT
* *
889697 GAACTTGTGTTGTCTCGAGTCC-ATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAGAAATTGGG
66 GAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGGCTCT-GAAATTGAG
889761 AAATTGTTAT
130 AAATTGTTAT
* * * *
889771 AAGTTGAAATTGGTTCTGGAACTGGGAATTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCT-GAACTGGGAAATTGTTTGTTGACAACCAG-CAT-CCTTCATTGTGAA
889836 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGGCTCTGAAATTG
63 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGGCTCTGAAATTG
*
889901 AGAAGTTGTT
128 AGAAATTGTT
889911 TGTTGACAAC
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
139 16 0.12
140 27 0.21
141 2 0.02
142 52 0.41
143 31 0.24
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (139 bp):
AAGTTGAAATTGGCTCTGAACTGGGAAATTGTTTGTTGACAACCAGCATCCTTCATTGTGAAGTT
GAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGGCTCTGAAATTGAGA
AATTGTTAT
Found at i:889915 original size:106 final size:106
Alignment explanation
Indices: 889771--890601 Score: 1331
Period size: 106 Copynumber: 7.8 Consensus size: 106
889761 AAATTGTTAT
* * * *
889771 AAGTTGAAATTGGTTCTGGAACTGGGAATTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
889836 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
* * *
889877 AAGATGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
889942 GTTGAACTTGTGTTGTC-CTGAGTCCAATATCCTTCGCTGTG
66 GTTGAACTTGTGTTGTCTC-GAGTCCAATATCCTTCGCTGTG
* * * * *
889983 AAGTTAAAATTGGCTCTGAAATTGGGAAATTATTTATTGACAACCAGCGGTCCCTTCGTCGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
* * *
890048 GTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
* *
890089 AAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACAACCAGTCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
*
890154 GTTGAACTTGTGTTGTCTCGAGTCCAATATCATTCGCTGTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
* *
890195 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGTCATCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
*
890260 GTTGAACTTGTGTTGTCTCGAGTCCAATATCTTTCGCTGTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
* * *
890301 AAGTTGAAATTGGCTCTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGA
1 AAGTTGAAATTGGCTC-TGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGA
* * * *
890366 AGTTGAACTTGCGTTGTCTGGATTCCAATATCCTTCGATGTG
65 AGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
* *
890408 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTAACAACAAGCCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
890473 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
* * * *
890514 AAGTTAAAATTGGCTCTGAAATTGGGGAGTTATTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
890579 GTTGAACTTGTGTTGTCTCGAGT
66 GTTGAACTTGTGTTGTCTCGAGT
890602 GGCACGATAT
Statistics
Matches: 668, Mismatches: 54, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
105 1 0.00
106 571 0.85
107 96 0.14
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (106 bp):
AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTG
Found at i:890502 original size:319 final size:318
Alignment explanation
Indices: 889771--890601 Score: 1448
Period size: 319 Copynumber: 2.6 Consensus size: 318
889761 AAATTGTTAT
* * * *
889771 AAGTTGAAATTGGTTCTGGAACTGGGAATTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
*
889836 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGATGAAATTGGCTCTGAAATTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
*
889901 AGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTC-CTGAGT
131 GGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC-GAGT
889965 CCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTATTTATTGACAACCAG
195 CCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTATTTATTGACAACCAG
890030 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTG
260 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTG
* *
890089 AAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGTTGACAACCAGTCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
*
890154 GTTGAACTTGTGTTGTCTCGAGTCCAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
* * *
890219 GGAAATTGTTTGTTGACAACCAGTCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTC
131 GGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTC
* * *
890284 CAATATCTTTCGCTGTGAAGTTGAAATTGGCTCTTGAAATTGGGAAATTGTTTATTGACAACCAG
196 CAATATCCTTCGCTGTGAAGTTAAAATTGGCTC-TGAAATTGGGAAATTATTTATTGACAACCAG
*
890349 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGATTCCAATATCCTTCGATGTG
260 CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTG
* *
890408 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTAACAACAAGCCGTCCCTTCGTTGTGAA
1 AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
*
890473 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTG
66 GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
* *
890538 GGGAGTTATTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
131 GGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT
890602 GGCACGATAT
Statistics
Matches: 484, Mismatches: 27, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
318 212 0.44
319 272 0.56
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (318 bp):
AAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAA
GTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
GGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTC
CAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAAATTGGGAAATTATTTATTGACAACCAGC
GGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGATGTG
Found at i:891590 original size:22 final size:21
Alignment explanation
Indices: 891541--891596 Score: 85
Period size: 22 Copynumber: 2.6 Consensus size: 21
891531 ATTGTGTTTG
891541 GTCAAAGGTTTGGCATTTGAT
1 GTCAAAGGTTTGGCATTTGAT
891562 GTCCAAAGGTTTGGCATTTGAT
1 GT-CAAAGGTTTGGCATTTGAT
*
891584 GCTCAAAGATTTG
1 G-TCAAAGGTTTG
891597 ATGGGGTAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 2 0.06
22 29 0.91
23 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.36
Consensus pattern (21 bp):
GTCAAAGGTTTGGCATTTGAT
Found at i:892288 original size:25 final size:25
Alignment explanation
Indices: 892244--892293 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
892234 TCTTCTTTTG
892244 TTCTTTTGCTTTCCCATTTTGCTTCTT
1 TTCTTTT-CTTTCCCATTTTG-TTCTT
*
892271 TTCTTTT-TTTCCCTTTTTGTTCT
1 TTCTTTTCTTTCCCATTTTGTTCT
892294 GATTGAATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 4 0.18
25 11 0.50
27 7 0.32
ACGTcount: A:0.02, C:0.24, G:0.06, T:0.68
Consensus pattern (25 bp):
TTCTTTTCTTTCCCATTTTGTTCTT
Found at i:895122 original size:16 final size:16
Alignment explanation
Indices: 895089--895194 Score: 55
Period size: 16 Copynumber: 6.6 Consensus size: 16
895079 ATATAATGAA
*
895089 AAATAAATAAATAGTAT
1 AAATAAAT-AATAATAT
895106 AAATAAATAATAATAT
1 AAATAAATAATAATAT
*
895122 --ATATAT-AT-ATAT
1 AAATAAATAATAATAT
* * *
895134 AAATATAAAAATGTATGT
1 AAATA-AATAAT-AATAT
895152 ATAATATAATAA-AATACT
1 A-AATA-AATAATAATA-T
895170 AAAT-AATAATAATA-
1 AAATAAATAATAATAT
895184 ATAATAAATAA
1 A-AATAAATAA
895195 ATGAAAATAA
Statistics
Matches: 70, Mismatches: 8, Indels: 23
0.69 0.08 0.23
Matches are distributed among these distances:
12 4 0.06
13 2 0.03
14 9 0.13
15 9 0.13
16 18 0.26
17 13 0.19
18 6 0.09
19 9 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
AAATAAATAATAATAT
Found at i:895269 original size:2 final size:2
Alignment explanation
Indices: 895262--895298 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
895252 TGAAGCAAGA
895262 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
895299 ATGTTAGGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:895359 original size:2 final size:2
Alignment explanation
Indices: 895352--895384 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
895342 GATAAAATAA
895352 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
895385 ATAGGAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:895985 original size:37 final size:37
Alignment explanation
Indices: 895932--896025 Score: 113
Period size: 34 Copynumber: 2.6 Consensus size: 37
895922 ATGCTTGCGG
* * * * *
895932 ATCCTATCTTTGGGAGTTTGAATTATCGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATAATCCTAAAACTCT
*
895969 ATCCTATTTTTAGGAGTTT---TAATCCTAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATAATCCTAAAACTCT
896003 ATCCTATTTTTAGGAGTTTGAAT
1 ATCCTATTTTTAGGAGTTTGAAT
896026 CCTAGTAGGA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
34 30 0.62
37 18 0.38
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.45
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATAATCCTAAAACTCT
Found at i:899177 original size:44 final size:44
Alignment explanation
Indices: 899109--899193 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
899099 GTGAAGGTGC
*
899109 GTTATCATTACCCTATTATATCACTCATGTCCCTCGGGGGCTAT
1 GTTATCATTACCCTATTATATCACTCATATCCCTCGGGGGCTAT
*
899153 GTTATCATTACCCTATTATGTCACTCATATCCCTCGGGGGC
1 GTTATCATTACCCTATTATATCACTCATATCCCTCGGGGGC
899194 ATTATTCATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.35
Consensus pattern (44 bp):
GTTATCATTACCCTATTATATCACTCATATCCCTCGGGGGCTAT
Found at i:899303 original size:20 final size:20
Alignment explanation
Indices: 899280--899347 Score: 50
Period size: 20 Copynumber: 3.2 Consensus size: 20
899270 GTTATCATTG
899280 CCCTATTATGTCACTCATGT
1 CCCTATTATGTCACTCATGT
* *
899300 CCCTCAGGGGCTATGTTA-TCAT-T
1 CCCT-A----TTATGTCACTCATGT
899323 ACCCTATTATGTCACTCATGT
1 -CCCTATTATGTCACTCATGT
899344 CCCT
1 CCCT
899348 CAGGGGTACT
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
19 6 0.17
20 12 0.33
21 2 0.06
23 2 0.06
24 8 0.22
25 6 0.17
ACGTcount: A:0.19, C:0.31, G:0.13, T:0.37
Consensus pattern (20 bp):
CCCTATTATGTCACTCATGT
Found at i:899330 original size:44 final size:44
Alignment explanation
Indices: 899267--899353 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
899257 TATCATAGAA
*
899267 TATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCAGGGGC
1 TATGTTATCATTACCCTATTATGTCACTCATGTCCCTCAGGGGC
899311 TATGTTATCATTACCCTATTATGTCACTCATGTCCCTCAGGGG
1 TATGTTATCATTACCCTATTATGTCACTCATGTCCCTCAGGGG
899354 TACTATTCAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (44 bp):
TATGTTATCATTACCCTATTATGTCACTCATGTCCCTCAGGGGC
Found at i:899377 original size:161 final size:161
Alignment explanation
Indices: 899109--899463 Score: 548
Period size: 161 Copynumber: 2.2 Consensus size: 161
899099 GTGAAGGTGC
* * *
899109 GTTATCATTACCCTATTATATCACTCATGTCCCTCGGGGGCTATGTTATCATTACCCTATTATGT
1 GTTATCATTGCCCTATTATGTCACTCATGTCCCTCAGGGGCTATGTTATCATTACCCTATTATGT
* * * * * *
899174 CACTCATATCCCTCGGGGGCATTATTCATGTCAGTGCCCAAAGTGGTGAAAGCGCGTTCCCGATA
66 CACTCATATCCCTCAGGGGCACTATTCATGTCAGTACCCAAAGTGGTGAAAGAGCATTCCCGAGA
*
899239 ACGCGCCTTCCATTATTTTATCATAGAATAT
131 ACGCGCCTTCCATTATTTTATCAGAGAATAT
899270 GTTATCATTGCCCTATTATGTCACTCATGTCCCTCAGGGGCTATGTTATCATTACCCTATTATGT
1 GTTATCATTGCCCTATTATGTCACTCATGTCCCTCAGGGGCTATGTTATCATTACCCTATTATGT
* * * * *
899335 CACTCATGTCCCTCAGGGGTACTATTCATGTCAGTACCCAAAGTGGTGAAAGAGCATTCTCGGGG
66 CACTCATATCCCTCAGGGGCACTATTCATGTCAGTACCCAAAGTGGTGAAAGAGCATTCCCGAGA
** *
899400 GTGCGCCTTCCATTATTTTGTCAGAGAATAT
131 ACGCGCCTTCCATTATTTTATCAGAGAATAT
899431 GTTATCATTGCCCTATTATGTCACTCATGTCCC
1 GTTATCATTGCCCTATTATGTCACTCATGTCCC
899464 CCGGAGAACT
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
161 176 1.00
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (161 bp):
GTTATCATTGCCCTATTATGTCACTCATGTCCCTCAGGGGCTATGTTATCATTACCCTATTATGT
CACTCATATCCCTCAGGGGCACTATTCATGTCAGTACCCAAAGTGGTGAAAGAGCATTCCCGAGA
ACGCGCCTTCCATTATTTTATCAGAGAATAT
Found at i:909728 original size:43 final size:43
Alignment explanation
Indices: 909658--909765 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
909648 TTAGAACCAA
* * * * *
909658 AAACGCCGCAATAGGTCAAGATCTATAGCGACGTTTTTGGAAC
1 AAACGCCACAAAAGGTCGATATTTATAGCGACGTTTTTGGAAC
* * * * *
909701 AAAGGTCGCAAAAGGTCGATATTTATAGCGGCGTTTTTGGTAC
1 AAACGCCACAAAAGGTCGATATTTATAGCGACGTTTTTGGAAC
*
909744 AAACGCCACAAAAGGTTGATAT
1 AAACGCCACAAAAGGTCGATAT
909766 AAAAACGCAG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (43 bp):
AAACGCCACAAAAGGTCGATATTTATAGCGACGTTTTTGGAAC
Found at i:909832 original size:67 final size:67
Alignment explanation
Indices: 909708--909833 Score: 166
Period size: 66 Copynumber: 1.9 Consensus size: 67
909698 AACAAAGGTC
* * * *
909708 GCAAAAGGTCGATATTTATAGCGGCGTTTTTGGTACAAACGCCACAAAAGGTTGATATAAAAACG
1 GCAAAAGGTCGATATCTATAGCAGCGTTTTTGGTAAAAACGCCACAAAAGGTAGATATAAAAACG
909773 CA
66 CA
* *
909775 GCAAAAGGTC-ATATCTATAGCAGCGGTTTTTGG-AAAAACGTCGCAAAAGGTCAGATATA
1 GCAAAAGGTCGATATCTATAGCAGC-GTTTTTGGTAAAAACGCCACAAAAGGT-AGATATA
909834 TAGCGGCATA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
66 27 0.53
67 24 0.47
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (67 bp):
GCAAAAGGTCGATATCTATAGCAGCGTTTTTGGTAAAAACGCCACAAAAGGTAGATATAAAAACG
CA
Found at i:909856 original size:109 final size:109
Alignment explanation
Indices: 909656--909857 Score: 277
Period size: 109 Copynumber: 1.8 Consensus size: 109
909646 TTTTAGAACC
* * *
909656 AAAAACGCCGCAATAGGTCAAGATCTATAGCGACGTTTTTGGAACAAAGGTCGCAAAAGGTCGAT
1 AAAAACGCAGCAAAAGGTCAAGATCTATAGCGACGTTTTTGGAACAAACGTCGCAAAAGGTCGAT
* *
909721 ATTTATAGCGGCGTTTTTGGTACAAACGCCACAAAAGGTTGATAT
66 A-TTATAGCGGCATATTTGGTACAAACGCCACAAAAGGTTGATAT
*
909766 AAAAACGCAGCAAAAGGTC-ATATCTATAGC-AGCGGTTTTTGGAA-AAACGTCGCAAAAGGTCA
1 AAAAACGCAGCAAAAGGTCAAGATCTATAGCGA-C-GTTTTTGGAACAAACGTCGCAAAAGGTC-
909828 GATA-TATAGCGGCATATTTGGATACAAACG
63 GATATTATAGCGGCATATTTGG-TACAAACG
909858 TCGCTAATTT
Statistics
Matches: 82, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
108 16 0.20
109 35 0.43
110 31 0.38
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (109 bp):
AAAAACGCAGCAAAAGGTCAAGATCTATAGCGACGTTTTTGGAACAAACGTCGCAAAAGGTCGAT
ATTATAGCGGCATATTTGGTACAAACGCCACAAAAGGTTGATAT
Found at i:912426 original size:21 final size:21
Alignment explanation
Indices: 912402--912456 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
912392 AGACTCTATC
912402 AATCCTACCACCACTACTGAA
1 AATCCTACCACCACTACTGAA
*
912423 AATCCTA-CAGCCACTGCTGAA
1 AATCCTACCA-CCACTACTGAA
* *
912444 AGTCCTACAACCA
1 AATCCTACCACCA
912457 TTTTAATTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.07
21 26 0.90
22 1 0.03
ACGTcount: A:0.36, C:0.36, G:0.09, T:0.18
Consensus pattern (21 bp):
AATCCTACCACCACTACTGAA
Found at i:916251 original size:21 final size:21
Alignment explanation
Indices: 916224--916282 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
916214 ATCCGAATTA
916224 CCCGCGACGACCGCAATAGCG
1 CCCGCGACGACCGCAATAGCG
*
916245 TCCGCGAC-AGCCGCAATAGCG
1 CCCGCGACGA-CCGCAATAGCG
* *
916266 CCCACGACGGCCGCAAT
1 CCCGCGACGACCGCAAT
916283 CACGGTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.24, C:0.42, G:0.27, T:0.07
Consensus pattern (21 bp):
CCCGCGACGACCGCAATAGCG
Found at i:922581 original size:91 final size:91
Alignment explanation
Indices: 922478--922660 Score: 339
Period size: 91 Copynumber: 2.0 Consensus size: 91
922468 TAAAAGCTAT
*
922478 CAAGTGACAACAATTCAACGAAAATAAAAGAGATGAAATTTAAATTTCTTTATAAAAATAAGAAG
1 CAAGTGACAACAATTCAACGAAAATAAAAGAGATGAAATTTAAATTTCTTTATAAAAAGAAGAAG
922543 CTTCCACTTCAAAAATATCTATTTAA
66 CTTCCACTTCAAAAATATCTATTTAA
922569 CAAGTGACAACAATTCAACGAAAATAAAAGAGATGAAATTTAAATTTCTTTATAAAAAGAAGAAG
1 CAAGTGACAACAATTCAACGAAAATAAAAGAGATGAAATTTAAATTTCTTTATAAAAAGAAGAAG
* *
922634 CTTTCACTTCAAAAATATCTCTTTAA
66 CTTCCACTTCAAAAATATCTATTTAA
922660 C
1 C
922661 CCATTCAAAT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (91 bp):
CAAGTGACAACAATTCAACGAAAATAAAAGAGATGAAATTTAAATTTCTTTATAAAAAGAAGAAG
CTTCCACTTCAAAAATATCTATTTAA
Found at i:924212 original size:15 final size:15
Alignment explanation
Indices: 924192--924229 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
924182 AATATCTTTT
*
924192 AAAATAATTTCAAGG
1 AAAATAATTTAAAGG
*
924207 AAAATATTTTAAAGG
1 AAAATAATTTAAAGG
924222 AAAA-AATT
1 AAAATAATT
924230 GATCTATGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 3 0.15
15 17 0.85
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.29
Consensus pattern (15 bp):
AAAATAATTTAAAGG
Found at i:924703 original size:29 final size:29
Alignment explanation
Indices: 924665--924739 Score: 116
Period size: 29 Copynumber: 2.6 Consensus size: 29
924655 TATCTAACAA
* *
924665 ATAAGTAAATAAAATAAAACTAAACGATG
1 ATAAATAAATAAAATAAAACTAAACAATG
*
924694 ATGAATAAATAAAATAAAACTAAACAATG
1 ATAAATAAATAAAATAAAACTAAACAATG
924723 ATAAATAAAT-AAATAAA
1 ATAAATAAATAAAATAAA
924740 TGAACATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 7 0.17
29 35 0.83
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (29 bp):
ATAAATAAATAAAATAAAACTAAACAATG
Found at i:927788 original size:12 final size:13
Alignment explanation
Indices: 927765--927794 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
927755 GGGTCGGGTA
927765 TCGGGGATTTTTT
1 TCGGGGATTTTTT
927778 TCGGGGA-TTTTT
1 TCGGGGATTTTTT
927790 TCGGG
1 TCGGG
927795 TCGGGTTCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.07, C:0.10, G:0.37, T:0.47
Consensus pattern (13 bp):
TCGGGGATTTTTT
Found at i:927870 original size:9 final size:9
Alignment explanation
Indices: 927856--927938 Score: 52
Period size: 9 Copynumber: 9.7 Consensus size: 9
927846 ATATATTATT
927856 TTATATTAA
1 TTATATTAA
927865 TTATA-TATA
1 TTATATTA-A
*
927874 TAATATT--
1 TTATATTAA
**
927881 TTATATTTT
1 TTATATTAA
927890 TTATATTAA
1 TTATATTAA
927899 TTATA-TATA
1 TTATATTA-A
*
927908 TAATATT--
1 TTATATTAA
**
927915 TTATATTTT
1 TTATATTAA
927924 TTATATTAA
1 TTATATTAA
927933 TTATAT
1 TTATAT
927939 ATAAAATATT
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
7 12 0.21
8 4 0.07
9 40 0.69
10 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
TTATATTAA
Found at i:927871 original size:25 final size:25
Alignment explanation
Indices: 927841--927950 Score: 108
Period size: 25 Copynumber: 4.7 Consensus size: 25
927831 TATATATATA
927841 TATATATATATTATTTTATATTAAT
1 TATATATATATTATTTTATATTAAT
* **
927866 TATATATATAATATTTTATATTTTT
1 TATATATATATTATTTTATATTAAT
*
927891 TATAT-TA-ATTA-TATATA-TAA-
1 TATATATATATTATTTTATATTAAT
*
927911 TAT-TTTATATT-TTTTATATTAAT
1 TATATATATATTATTTTATATTAAT
* *
927934 TATATATAAAATATTTT
1 TATATATATATTATTTT
927951 CGGGTTCGGG
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
19 1 0.01
20 5 0.07
21 9 0.13
22 8 0.12
23 6 0.09
24 7 0.10
25 31 0.46
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TATATATATATTATTTTATATTAAT
Found at i:927897 original size:34 final size:34
Alignment explanation
Indices: 927829--927950 Score: 201
Period size: 34 Copynumber: 3.6 Consensus size: 34
927819 CCCCGCCCCG
*
927829 ATTATATATAT-ATATATATATATTATTTTATATTA
1 ATTATATATATAATAT-TTTATATT-TTTTATATTA
927864 ATTATATATATAATATTTTATATTTTTTATATTA
1 ATTATATATATAATATTTTATATTTTTTATATTA
927898 ATTATATATATAATATTTTATATTTTTTATATTA
1 ATTATATATATAATATTTTATATTTTTTATATTA
*
927932 ATTATATATAAAATATTTT
1 ATTATATATATAATATTTT
927951 CGGGTTCGGG
Statistics
Matches: 84, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
34 62 0.74
35 18 0.21
36 4 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (34 bp):
ATTATATATATAATATTTTATATTTTTTATATTA
Found at i:943196 original size:12 final size:12
Alignment explanation
Indices: 943179--943228 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
943169 CTTCAAGAGG
943179 TTTTATATTTAA
1 TTTTATATTTAA
943191 TTTTATA-TT-A
1 TTTTATATTTAA
* *
943201 TATTATATTTGA
1 TTTTATATTTAA
943213 TTTTA-ATTTTAA
1 TTTTATA-TTTAA
943225 TTTT
1 TTTT
943229 TTAAATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
10 7 0.22
11 5 0.16
12 20 0.62
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (12 bp):
TTTTATATTTAA
Found at i:943315 original size:16 final size:18
Alignment explanation
Indices: 943274--943319 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
943264 TATAGATATT
*
943274 TAATTTTATATCATATAA
1 TAATTTTATATTATATAA
*
943292 TTATTTTATATTAT-TAA
1 TAATTTTATATTATATAA
943309 -AATTTTATATT
1 TAATTTTATATT
943320 TATTTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 10 0.40
17 3 0.12
18 12 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TAATTTTATATTATATAA
Found at i:944309 original size:44 final size:42
Alignment explanation
Indices: 944044--944513 Score: 287
Period size: 43 Copynumber: 11.0 Consensus size: 42
944034 CTTAATTATA
* ** *
944044 GTAGAAATTGAGATTGAAAAAAAATTA-GGGTATCAATTATATAG
1 GTAGAAAGTGAGATT---AAAAAATTAGGGGCCTCAATTATAAAG
* *
944088 GTA-TAA-TCGAGATTGAAAAAAATTAGGGGCCTAAATTATAAAG
1 GTAGAAAGT-GAGATT--AAAAAATTAGGGGCCTCAATTATAAAG
** * * *
944131 GTAGAATTTGAGATTGAAAAAACTTAGAGGTCTC-GTTATAAAG
1 GTAGAAAGTGAGATT-AAAAAA-TTAGGGGCCTCAATTATAAAG
* * *
944174 GTAGAAAGTGGGATTGAAAAACTTAAGGGCCTCAATTATAAAG
1 GTAGAAAGTGAGATT-AAAAAATTAGGGGCCTCAATTATAAAG
* *
944217 TTAGAAAGTGAGATTAAAAAATTAGGGGCTTCAATTATAAAG
1 GTAGAAAGTGAGATTAAAAAATTAGGGGCCTCAATTATAAAG
*
944259 GTAGAAATTGAGATTCAGAAAAATTAGGGGCCTCAATTGTAAAGATAGAAAAG
1 GTAGAAAGTGAGATT-A-AAAAATTAGGGGCCTCAA-T-T----AT---AAAG
* *
944312 GTAGAAAGTGAGATTGAAAAAACTTAAGGGCTTCAATTATAAA-
1 GTAGAAAGTGAGATT-AAAAAA-TTAGGGGCCTCAATTATAAAG
*
944355 GT-----G-G-GATT-AAAAATTAGGGGCCTCAATTGTAAAG
1 GTAGAAAGTGAGATTAAAAAATTAGGGGCCTCAATTATAAAG
* * * *
944389 GTA-AAGAG-G-GATTGAAAAATTAGAGACTTCAATTATAAAG
1 GTAGAA-AGTGAGATTAAAAAATTAGGGGCCTCAATTATAAAG
* *
944429 AT-GAAAAGTGAGATTAAATAAATTAGGAG-CTCAATTATAAAG
1 GTAG-AAAGTGAGATTAAA-AAATTAGGGGCCTCAATTATAAAG
* * *
944471 GTAAAAAAATAAGATTTAAAAAAGTTA-GGGCCT-AATTATAAAG
1 GT-AGAAAGTGAGA-TTAAAAAA-TTAGGGGCCTCAATTATAAAG
944514 ATGAAAAAAA
Statistics
Matches: 340, Mismatches: 51, Indels: 71
0.74 0.11 0.15
Matches are distributed among these distances:
33 17 0.05
34 7 0.02
36 4 0.01
37 1 0.00
38 1 0.00
39 6 0.02
40 25 0.07
41 3 0.01
42 75 0.22
43 109 0.32
44 48 0.14
45 2 0.01
46 1 0.00
47 2 0.01
50 2 0.01
51 1 0.00
52 6 0.02
53 30 0.09
ACGTcount: A:0.46, C:0.06, G:0.22, T:0.26
Consensus pattern (42 bp):
GTAGAAAGTGAGATTAAAAAATTAGGGGCCTCAATTATAAAG
Found at i:944318 original size:53 final size:53
Alignment explanation
Indices: 944255--944355 Score: 141
Period size: 53 Copynumber: 1.9 Consensus size: 53
944245 CTTCAATTAT
* * *
944255 AAAGGTAGAAATTGAGATTCAGAAAAA-TTAGGGGCCTCAATTGTAAAGATAGA
1 AAAGGTAGAAAGTGAGATTCA-AAAAACTTAAGGGCCTCAATTATAAAGATAGA
* *
944308 AAAGGTAGAAAGTGAGATTGAAAAAACTTAAGGGCTTCAATTATAAAG
1 AAAGGTAGAAAGTGAGATTCAAAAAACTTAAGGGCCTCAATTATAAAG
944356 TGGGATTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
52 5 0.12
53 37 0.88
ACGTcount: A:0.47, C:0.07, G:0.24, T:0.23
Consensus pattern (53 bp):
AAAGGTAGAAAGTGAGATTCAAAAAACTTAAGGGCCTCAATTATAAAGATAGA
Found at i:944356 original size:36 final size:33
Alignment explanation
Indices: 944316--944388 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
944306 GAAAAGGTAG
*
944316 AAAGTGAGATTGAAAAAACTTAAGGGCTTCAATTAT
1 AAAGTGAGATT--AAAAA-TTAAGGGCCTCAATTAT
* * *
944352 AAAGTGGGATTAAAAATTAGGGGCCTCAATTGT
1 AAAGTGAGATTAAAAATTAAGGGCCTCAATTAT
944385 AAAG
1 AAAG
944389 GTAAAGAGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 18 0.55
34 5 0.15
36 10 0.30
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.26
Consensus pattern (33 bp):
AAAGTGAGATTAAAAATTAAGGGCCTCAATTAT
Found at i:944421 original size:40 final size:37
Alignment explanation
Indices: 944351--944475 Score: 108
Period size: 40 Copynumber: 3.1 Consensus size: 37
944341 GCTTCAATTA
* * *
944351 TAAAGTGGGATTAAAAATTAGGGGCCTCAATTGTAAAGG
1 TAAAGAGGGATTAAAAATTA--GGACTCAATTATAAAGG
*
944390 TAAAGAGGGATTGAAAAATTAGAGACTTCAATTATAAAGA
1 TAAAGAGGGATT-AAAAATTAG-GAC-TCAATTATAAAGG
944430 TGAAA-AGTGAGATTAAATAAATTAGGAGCTCAATTATAAAGG
1 T-AAAGAG-G-GATT-AA-AAATTAGGA-CTCAATTATAAAGG
944472 TAAA
1 TAAA
944476 AAAATAAGAT
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
38 1 0.01
39 13 0.18
40 22 0.31
41 7 0.10
42 21 0.29
43 8 0.11
ACGTcount: A:0.46, C:0.06, G:0.22, T:0.26
Consensus pattern (37 bp):
TAAAGAGGGATTAAAAATTAGGACTCAATTATAAAGG
Found at i:944521 original size:44 final size:44
Alignment explanation
Indices: 944417--944524 Score: 120
Period size: 43 Copynumber: 2.5 Consensus size: 44
944407 ATTAGAGACT
* *
944417 TCAATTATAAAGATG--AAAAGTGAGATTAAATAAATTAGGAGC
1 TCAATTATAAAGATGAAAAAAATAAGATTAAATAAATTAGGAGC
*
944459 TCAATTATAAAGGT-AAAAAAATAAGATTTAAA-AAAGTTAGG-GC
1 TCAATTATAAAGATGAAAAAAATAAGA-TTAAATAAA-TTAGGAGC
944502 -CTAATTATAAAGATGAAAAAAAT
1 TC-AATTATAAAGATGAAAAAAAT
944525 GGGGGTCTGT
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
42 14 0.25
43 24 0.43
44 18 0.32
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.26
Consensus pattern (44 bp):
TCAATTATAAAGATGAAAAAAATAAGATTAAATAAATTAGGAGC
Found at i:947122 original size:64 final size:64
Alignment explanation
Indices: 947016--947140 Score: 214
Period size: 64 Copynumber: 2.0 Consensus size: 64
947006 TCGGATTTGA
* * *
947016 GCAAAAATTCTAGAATGCAAAGAGGGTACCGATACCCTCCAGGGGTATCCATACCCCCTGGAAG
1 GCAAAAATTCCAGAATACAAAGAGGGTACCGATACCCCCCAGGGGTATCCATACCCCCTGGAAG
*
947080 GCAAAAATTCCAGAATACAAATAGGGTACCGATACCCCCCAGGGGTATCCATACCCCCTGG
1 GCAAAAATTCCAGAATACAAAGAGGGTACCGATACCCCCCAGGGGTATCCATACCCCCTGG
947141 CTGCAACGGC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.17
Consensus pattern (64 bp):
GCAAAAATTCCAGAATACAAAGAGGGTACCGATACCCCCCAGGGGTATCCATACCCCCTGGAAG
Found at i:961637 original size:45 final size:45
Alignment explanation
Indices: 961586--961687 Score: 132
Period size: 45 Copynumber: 2.3 Consensus size: 45
961576 TATATTTCAT
** * *
961586 CCTATGTGATTATATGAAAAGGTGATATAAACTATGTGGTATTGG
1 CCTATGTGATTATATGAAAAGGTGATATAAACTATGTGACAATGA
* * * *
961631 CCTATGTGACTATATGAAAATGTGGTATAAGCTATGTGACAATGA
1 CCTATGTGATTATATGAAAAGGTGATATAAACTATGTGACAATGA
961676 CCTATGTGATTA
1 CCTATGTGATTA
961688 CATGTCTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (45 bp):
CCTATGTGATTATATGAAAAGGTGATATAAACTATGTGACAATGA
Found at i:961823 original size:23 final size:23
Alignment explanation
Indices: 961792--961846 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
961782 TCGAGGGTTT
* *
961792 TACGCGGTCCTTTAGGACAATTC
1 TACGTGGTCCTTCAGGACAATTC
* * *
961815 TACGTGGTCCTTCGGGATATTTC
1 TACGTGGTCCTTCAGGACAATTC
961838 TACGTGGTC
1 TACGTGGTC
961847 TTTCGGGGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (23 bp):
TACGTGGTCCTTCAGGACAATTC
Found at i:961888 original size:23 final size:22
Alignment explanation
Indices: 961806--961885 Score: 61
Period size: 23 Copynumber: 3.5 Consensus size: 22
961796 CGGTCCTTTA
*
961806 GGACAATTCTACGTGGTCCTTCG
1 GGACAATTCTACGT-GTTCTTCG
* * *
961829 GGATATTTCTACGTGGTCTTTCG
1 GGACAATTCTACGTGTTC-TTCG
* * *
961852 GGGCAATACTATGTAGTTCTTCG
1 GGACAATTCTACGT-GTTCTTCG
*
961875 GGACATTTCTA
1 GGACAATTCTA
961886 TGTGGCACTT
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
22 2 0.05
23 37 0.88
24 3 0.07
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (22 bp):
GGACAATTCTACGTGTTCTTCG
Found at i:961914 original size:24 final size:24
Alignment explanation
Indices: 961879--961924 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
961869 TCTTCGGGAC
*
961879 ATTTCTATGTGGCACTTCGGTGCA
1 ATTTCTACGTGGCACTTCGGTGCA
961903 ATTTCTACGTGGCACTTCGGTG
1 ATTTCTACGTGGCACTTCGGTG
961925 AAAATTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (24 bp):
ATTTCTACGTGGCACTTCGGTGCA
Found at i:966347 original size:22 final size:22
Alignment explanation
Indices: 966286--966347 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
966276 GTGAAATTTA
* * *
966286 TCCCGAAAAACCTATGAATTTG
1 TCCCGAAAGACCTATGTATATG
* * *
966308 TCTCGAATGACCTCTGTATATG
1 TCCCGAAAGACCTATGTATATG
*
966330 TCCCGAAGGACCTATGTA
1 TCCCGAAAGACCTATGTA
966348 ACCCTCGACT
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (22 bp):
TCCCGAAAGACCTATGTATATG
Found at i:966870 original size:24 final size:19
Alignment explanation
Indices: 966805--966853 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
966795 ATTTGGAGTA
*
966805 GTATCGGTACCCCCATAGG
1 GTATCGGTACCCCTATAGG
966824 GTATCGGTACCCCTATAGG
1 GTATCGGTACCCCTATAGG
966843 GTATCGGTACC
1 GTATCGGTACC
966854 TCCCTAGCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (19 bp):
GTATCGGTACCCCTATAGG
Found at i:975672 original size:20 final size:21
Alignment explanation
Indices: 975629--975673 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
975619 GGGATGGAAA
*
975629 TATCAATACTCGTTCATGTGG
1 TATCAATACTCGTTCATGTAG
975650 TATCAATAC-CGTTCAATG-AG
1 TATCAATACTCGTTC-ATGTAG
975670 TATC
1 TATC
975674 GATATTCAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (21 bp):
TATCAATACTCGTTCATGTAG
Found at i:986189 original size:95 final size:95
Alignment explanation
Indices: 986021--986219 Score: 305
Period size: 95 Copynumber: 2.1 Consensus size: 95
986011 AGATTATAAT
986021 ATTAT-ATATACAATAAAGCTTGAGTTGTCCCTATAAAACAATTGGTTAAACACCCCAGATTTAT
1 ATTATAATATACAATAAAGCTTGAGTTGTCCCTATAAAACAATTGGTTAAACACCCCAGATTTAT
986085 GGATAAGATTCAGCTAGCCTGATAAAGGTG
66 GGATAAGATTCAGCTAGCCTGATAAAGGTG
* * ** **
986115 AATT-TAATATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAA-TGCCTTGACTTT
1 -ATTATAATATACAATAAAGCTTGAGTTGTCCCTATAAAACAATTGGTTAAACACCCCAGA-TTT
986178 ATGGATAAGATTCAGCTAGCCTGATAAAGGTG
64 ATGGATAAGATTCAGCTAGCCTGATAAAGGTG
986210 ATTATAATAT
1 ATTATAATAT
986220 TGAGTTGTCC
Statistics
Matches: 95, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
94 8 0.08
95 87 0.92
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (95 bp):
ATTATAATATACAATAAAGCTTGAGTTGTCCCTATAAAACAATTGGTTAAACACCCCAGATTTAT
GGATAAGATTCAGCTAGCCTGATAAAGGTG
Found at i:986674 original size:25 final size:25
Alignment explanation
Indices: 986646--986704 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
986636 GACATTTGTC
* *
986646 AAAGGGCTATAACTCTGAAAGCATT
1 AAAGAGCTATAAATCTGAAAGCATT
986671 AAAGAGCTATAAATCTGAAAGCATT
1 AAAGAGCTATAAATCTGAAAGCATT
986696 AAAGAGCTA
1 AAAGAGCTA
986705 CTGATTCCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.22
Consensus pattern (25 bp):
AAAGAGCTATAAATCTGAAAGCATT
Found at i:986932 original size:12 final size:12
Alignment explanation
Indices: 986915--986944 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
986905 CATGGTCGAA
986915 GCCCAATTCCGG
1 GCCCAATTCCGG
986927 GCCCAATTCCGG
1 GCCCAATTCCGG
986939 GCCCAA
1 GCCCAA
986945 ACGAAAGACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.20, C:0.43, G:0.23, T:0.13
Consensus pattern (12 bp):
GCCCAATTCCGG
Found at i:988705 original size:20 final size:20
Alignment explanation
Indices: 988663--988709 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
988653 GAATATGTAA
*
988663 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTCACT
*
988683 ATCGCAACGCGA-TCTCCAGT
1 ATCGCAACGCGATTCT-CACT
988703 ATCGCAA
1 ATCGCAA
988710 ATCAGTTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (20 bp):
ATCGCAACGCGATTCTCACT
Found at i:988836 original size:20 final size:20
Alignment explanation
Indices: 988785--988836 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
988775 ATTTTAGAAT
*
988785 ATCGCAATGCAAATATGTAA
1 ATCGCAATGCGAATATGTAA
*
988805 ATCGTAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
*
988825 ATCGCAACGCGA
1 ATCGCAATGCGA
988837 TAATACAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.23
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:988870 original size:41 final size:41
Alignment explanation
Indices: 988825--989050 Score: 373
Period size: 41 Copynumber: 5.5 Consensus size: 41
988815 GAATATGTAA
988825 ATCGCAACGCGATAATACAAAATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAATACAAAATCGCAACGCGATTCTGACT
* *
988866 ATCGCAACGC-ATTAATACAAAATTGCAATGCGATTCTGACT
1 ATCGCAACGCGA-TAATACAAAATCGCAACGCGATTCTGACT
*
988907 ATCGCAACGCGATAATACAAAACCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAATACAAAATCGCAACGCGATTCTGACT
* *
988948 ATCGCAATGCGATAATACATAATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAATACAAAATCGCAACGCGATTCTGACT
* *
988989 ATCGCAACCCGATAATACAAATTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAATACAAAATCGCAACGCGATTCTGACT
989030 ATCGCAACGCGATAATACAAA
1 ATCGCAACGCGATAATACAAA
989051 TTTACGTTAG
Statistics
Matches: 170, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 1 0.01
41 168 0.99
42 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (41 bp):
ATCGCAACGCGATAATACAAAATCGCAACGCGATTCTGACT
Found at i:989466 original size:19 final size:19
Alignment explanation
Indices: 989442--989550 Score: 101
Period size: 19 Copynumber: 5.4 Consensus size: 19
989432 TTATTTTGGA
989442 TTTTTCACTATCGCAACAC
1 TTTTTCACTATCGCAACAC
989461 TTTTTCACTATCGCAACAACAC
1 TTTTTCACTATCG---CAACAC
*
989483 GTTTTTCAAACTCTCGCAACAC
1 -TTTTTC--ACTATCGCAACAC
* * *
989505 ATTTTAACTATCGCAATAC
1 TTTTTCACTATCGCAACAC
* *
989524 ATTTTAACTATCGCAACAC
1 TTTTTCACTATCGCAACAC
989543 ATTTTTCA
1 -TTTTTCA
989551 AAATCGCGTT
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
19 42 0.56
20 5 0.07
21 4 0.05
22 12 0.16
23 6 0.08
25 6 0.08
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.36
Consensus pattern (19 bp):
TTTTTCACTATCGCAACAC
Found at i:992932 original size:30 final size:30
Alignment explanation
Indices: 992851--992932 Score: 119
Period size: 30 Copynumber: 2.7 Consensus size: 30
992841 AAATGAAACG
*
992851 CTCTCACCCCGTAAACATTCACACAACAATC
1 CTCTCAACCCGTAAACA-TCACACAACAATC
*
992882 CTCTCAACCCGAAAACATCACACAACAATC
1 CTCTCAACCCGTAAACATCACACAACAATC
* *
992912 CTCTCAACCTGTAAATATCAC
1 CTCTCAACCCGTAAACATCAC
992933 CCGATAATCC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 31 0.67
31 15 0.33
ACGTcount: A:0.38, C:0.39, G:0.04, T:0.20
Consensus pattern (30 bp):
CTCTCAACCCGTAAACATCACACAACAATC
Found at i:996899 original size:15 final size:14
Alignment explanation
Indices: 996875--996916 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
996865 TGAAAGTAAG
*
996875 TTTCTCTTCTTTCTT
1 TTTCTTTTCTTTC-T
996890 TTTCTTTTCTTTCT
1 TTTCTTTTCTTTCT
996904 TTTCTGTTTCTTT
1 TTTCT-TTTCTTT
996917 GTATCTCTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTCTTTTCTTTCT
Found at i:996907 original size:20 final size:20
Alignment explanation
Indices: 996875--996916 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
996865 TGAAAGTAAG
*
996875 TTTCTCTTCTTTCTTTTTCT
1 TTTCTCTTCTTTCTGTTTCT
996895 TTTCT-TTCTTTTCTGTTTCT
1 TTTCTCTTC-TTTCTGTTTCT
996915 TT
1 TT
996917 GTATCTCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTCTCTTCTTTCTGTTTCT
Found at i:997402 original size:14 final size:15
Alignment explanation
Indices: 997383--997417 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
997373 GGTCTGTAAT
997383 TATTTATTT-ATATA
1 TATTTATTTAATATA
997397 TATTTATTTAATATA
1 TATTTATTTAATATA
997412 TATTTA
1 TATTTA
997418 ATAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTTATTTAATATA
Found at i:997424 original size:3 final size:3
Alignment explanation
Indices: 997416--997507 Score: 148
Period size: 3 Copynumber: 30.7 Consensus size: 3
997406 AATATATATT
*
997416 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
997464 TAA TAA TCA TCA TCA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
997508 TGGATAAAAA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 85 1.00
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:998036 original size:93 final size:92
Alignment explanation
Indices: 997860--998050 Score: 319
Period size: 93 Copynumber: 2.1 Consensus size: 92
997850 TATGAACTTC
* *
997860 TTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGATAATCCATCAATTG
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGATAATCCATCAAATG
997925 ATGAATTCAGGTAAAAGGTTGAACAAA
66 ATGAATTCAGGTAAAAGGTTGAACAAA
* * *
997952 TTCTTCCTTCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCTCTGGAAAAGATAATCCATCAAAT
*
998017 GATGGATTCAGGTAAAAGGTTGAACAAA
65 GATGAATTCAGGTAAAAGGTTGAACAAA
998045 TTCTTC
1 TTCTTC
998051 TCATTATGAA
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
92 35 0.38
93 57 0.62
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (92 bp):
TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAGATAATCCATCAAATG
ATGAATTCAGGTAAAAGGTTGAACAAA
Found at i:998349 original size:227 final size:226
Alignment explanation
Indices: 997952--998473 Score: 850
Period size: 227 Copynumber: 2.3 Consensus size: 226
997942 GTTGAACAAA
*
997952 TTCTTCCTTCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
* *
998017 GATGGATTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
66 GATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
* * *
998082 GAGTTCTTCTCATTATGAACTTTTTATGGAAAAACTGATCCATCAAATGATGGATTCAG-GTAAA
131 GAGTTCTTCTCATTATGAACTTTCTATGGAAAAACTGATCCATCAAATGATAGATT-AGAGCAAA
*
998146 AGGTTGAACAAATTCTTCTCATTATGAACTTC
195 AGGTTGAACAAACTCTTCTCATTATGAACTTC
* * * *
998178 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCAATT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAA-A
*
998243 TGATGAATT-TGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
65 TGATGAATTCAG-GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* * *
998307 ATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATAGATTTGAGCAA
129 ATGAGTTCTTCTCATTATGAACTTTCTATGGAAAAACTGATCCATCAAATGATAGATTAGAGCAA
*
998372 AAGGTTGAACAAGCTCTTCTCATTATGAACTTC
194 AAGGTTGAACAAACTCTTCTCATTATGAACTTC
*
998405 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTACGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
998470 GATG
66 GATG
998474 GATTTAAATC
Statistics
Matches: 272, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
226 66 0.24
227 206 0.76
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (226 bp):
TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
GATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT
GAGTTCTTCTCATTATGAACTTTCTATGGAAAAACTGATCCATCAAATGATAGATTAGAGCAAAA
GGTTGAACAAACTCTTCTCATTATGAACTTC
Found at i:998478 original size:113 final size:114
Alignment explanation
Indices: 997952--998478 Score: 864
Period size: 113 Copynumber: 4.6 Consensus size: 114
997942 GTTGAACAAA
*
997952 TTCTTCCTTCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
*
998017 GATGGA-TTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
66 GATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
* * *
998065 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTATGGAAAAACTGATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
*
998130 GATGGA-TTCAGGTAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
66 GATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
* * * *
998178 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCAATT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAA-A
* *
998243 TGATGAATTTGA-GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
65 TGATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
998292 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
* * **
998357 GATAGATTTGA-GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTC
66 GATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
*
998405 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTACGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
998470 GATGGATTT
66 GATGGATTT
998479 AAATCTTTGC
Statistics
Matches: 388, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
113 283 0.73
114 102 0.26
115 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (114 bp):
TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAAT
GATGGATTTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTC
Found at i:999345 original size:83 final size:83
Alignment explanation
Indices: 999209--999502 Score: 502
Period size: 83 Copynumber: 3.5 Consensus size: 83
999199 GTTCCTACCA
* * * *
999209 AACCAGATCAGATAACTCAAAGAACATTTCCAGAAGATGCTA-TGAACACATTCATCTTCCAAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCTAAAT
999273 TCAATGATTGGTTCTG-CC
65 TCAATGATTGGTTCTGTCC
999291 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAAT
1 -AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAAT
*
999356 TCAATGATTGGTTCTGTTC
65 TCAATGATTGGTTCTGTCC
999375 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
*
999440 CAATGATTGGTTCTGTTC
66 CAATGATTGGTTCTGTCC
999458 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG
999503 AGTCTCTTTC
Statistics
Matches: 204, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
83 201 0.99
84 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (83 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
CAATGATTGGTTCTGTCC
Found at i:1011777 original size:2 final size:2
Alignment explanation
Indices: 1011770--1011795 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1011760 GTCTCTAAAA
1011770 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1011796 TTAATTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1012056 original size:17 final size:18
Alignment explanation
Indices: 1012034--1012071 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1012024 TATTTATTAT
1012034 ATATTTA-TAATATAAAA
1 ATATTTATTAATATAAAA
*
1012051 ATATTTATTCATATAAAA
1 ATATTTATTAATATAAAA
1012069 ATA
1 ATA
1012072 AAATATACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATTTATTAATATAAAA
Found at i:1013409 original size:14 final size:15
Alignment explanation
Indices: 1013390--1013424 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
1013380 GGTCTGTAAT
1013390 TATTTATTT-ATATA
1 TATTTATTTAATATA
1013404 TATTTATTTAATATA
1 TATTTATTTAATATA
1013419 TATTTA
1 TATTTA
1013425 ATAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTTATTTAATATA
Found at i:1013431 original size:3 final size:3
Alignment explanation
Indices: 1013423--1013523 Score: 184
Period size: 3 Copynumber: 33.7 Consensus size: 3
1013413 AATATATATT
*
1013423 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
1013471 TAA TAA TCA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1013519 TAA TA
1 TAA TA
1013524 TGGATAAAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 94 1.00
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1016881 original size:29 final size:31
Alignment explanation
Indices: 1016848--1016909 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 31
1016838 GCAAAAAAAT
*
1016848 TAATTAAATAAAATACTAA-AATAT-TTAAA
1 TAATTAAATAAAATACTAACAAAATATTAAA
1016877 TAATTAAATAAAATACTAACAAAATATTAAA
1 TAATTAAATAAAATACTAACAAAATATTAAA
1016908 TA
1 TA
1016910 GAATAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 19 0.63
30 4 0.13
31 7 0.23
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (31 bp):
TAATTAAATAAAATACTAACAAAATATTAAA
Found at i:1016973 original size:20 final size:20
Alignment explanation
Indices: 1016950--1016988 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
1016940 ACGAGATGTG
1016950 AGAGAATTT-AAGAGGATTTA
1 AGAGAATTTGAA-AGGATTTA
1016970 AGAGAATTTGAAAGGATTT
1 AGAGAATTTGAAAGGATTT
1016989 GGTGTGGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.31
Consensus pattern (20 bp):
AGAGAATTTGAAAGGATTTA
Found at i:1019313 original size:36 final size:38
Alignment explanation
Indices: 1019243--1019313 Score: 110
Period size: 36 Copynumber: 1.9 Consensus size: 38
1019233 ATATAGTTTG
**
1019243 AAATCATTTTGAAAATTATATAATATATGGTTTTTTTT
1 AAATCATTTTGAAAATTATATAATATATAATTTTTTTT
1019281 AAAT-ATTTTGAAAA-TATATAATATATAATTTTT
1 AAATCATTTTGAAAATTATATAATATATAATTTTT
1019314 AAAAACATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 17 0.55
37 10 0.32
38 4 0.13
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (38 bp):
AAATCATTTTGAAAATTATATAATATATAATTTTTTTT
Found at i:1019326 original size:36 final size:37
Alignment explanation
Indices: 1019249--1019565 Score: 234
Period size: 35 Copynumber: 8.8 Consensus size: 37
1019239 TTTGAAATCA
* ***
1019249 TTTTGAAAATTATATAATATATGGTTTTTTTTAAATA--
1 TTTTGAAAA-TATATAATATATAG-TTTTGAAAAATAGT
* * *
1019286 TTTTGAAAATATATAATATATAATTTTTAAAAACA-T
1 TTTTGAAAATATATAATATATAGTTTTGAAAAATAGT
* * * *
1019322 TTTTGAAAATACATATTATATTGTTTTG-AAAA-CGT
1 TTTTGAAAATATATAATATATAGTTTTGAAAAATAGT
* *
1019357 TTTTTAAATATATATAATATATAGCTTTT-AAAAACA--
1 TTTTGAAA-ATATATAATATATAG-TTTTGAAAAATAGT
* * *
1019393 TTTTGAAAA-ACAT-ATATATAATTTTGAAAATTAGT
1 TTTTGAAAATATATAATATATAGTTTTGAAAAATAGT
* * * *
1019428 TTCT--AAATATATATTATATAATTTTGAAAATTAGT
1 TTTTGAAAATATATAATATATAGTTTTGAAAAATAGT
*
1019463 TTTT-AAAATATATATATTATATAGTTTTGAAAATTAGT
1 TTTTGAAAATATATA-A-TATATAGTTTTGAAAAATAGT
* * *
1019501 TTTT-AAAAAAGTATATTATATAGTTTTGAAAATTAGT
1 TTTTGAAAATA-TATAATATATAGTTTTGAAAAATAGT
*
1019538 TTTT-AAAA-ATATATTATATAGTTTTGAA
1 TTTTGAAAATATATAATATATAGTTTTGAA
1019566 TTTTTTTTTT
Statistics
Matches: 236, Mismatches: 29, Indels: 32
0.79 0.10 0.11
Matches are distributed among these distances:
32 4 0.02
33 15 0.06
34 6 0.03
35 68 0.29
36 64 0.27
37 46 0.19
38 29 0.12
39 4 0.02
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.47
Consensus pattern (37 bp):
TTTTGAAAATATATAATATATAGTTTTGAAAAATAGT
Found at i:1019342 original size:72 final size:70
Alignment explanation
Indices: 1019286--1019495 Score: 191
Period size: 72 Copynumber: 3.0 Consensus size: 70
1019276 TTTTTAAATA
*
1019286 TTTTGAAA-ATATATAATATATAATTTTTAAAAACATTTTTGAAAATACATATTATATTGTTTTG
1 TTTTGAAATATATATAATATATAACTTTTAAAAACA-TTTTGAAAATACATATTATATTGTTTTG
1019350 AAAACGT
65 AAAAC-T
* * **
1019357 TTTTTAAATATATATAATATATAGCTTTTAAAAACATTTTGAAAA-ACATA-TATATAATTTTGA
1 TTTTGAAATATATATAATATATAACTTTTAAAAACATTTTGAAAATACATATTATATTGTTTTGA
1019420 AAA-T
66 AAACT
* ** * * *
1019424 TAGTTTCTAAATATATAT--TATATAA-TTTTGAAAATTAGTTTTTAAAATATATATATTATATA
1 T--TTT-GAAATATATATAATATATAACTTTT-AAAA--ACATTTTGAAA-ATACATATTATATT
1019486 GTTTTGAAAA
59 GTTTTGAAAA
1019496 TTAGTTTTTA
Statistics
Matches: 118, Mismatches: 11, Indels: 18
0.80 0.07 0.12
Matches are distributed among these distances:
67 6 0.05
68 10 0.08
69 17 0.14
70 24 0.20
71 17 0.14
72 29 0.25
73 15 0.13
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (70 bp):
TTTTGAAATATATATAATATATAACTTTTAAAAACATTTTGAAAATACATATTATATTGTTTTGA
AAACT
Found at i:1019525 original size:37 final size:36
Alignment explanation
Indices: 1019334--1019648 Score: 269
Period size: 37 Copynumber: 8.9 Consensus size: 36
1019324 TTGAAAATAC
* * *
1019334 ATATTATATTGTTTTGAAAA--CGTTTTTTAAATATAT
1 ATATTATATAGTTTTGAAAATTAG-TTTTTAAA-AAAT
* ** * *
1019370 ATAATATATAGCTTTT-AAAAACA-TTTTGAAAAACAT
1 ATATTATATAG-TTTTGAAAATTAGTTTT-TAAAAAAT
* *
1019406 ATAT-ATA-A-TTTTGAAAATTAGTTTCT-AAATAT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAAT
*
1019438 ATATTATATAATTTTGAAAATTAGTTTTTAAAATATAT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAA-A-AT
1019476 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAAGT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAA-T
1019513 ATATTATATAGTTTTGAAAATTAGTTTTT-AAAAAT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAAT
** * *
1019548 ATATTATATAGTTTTG--AATTTTTTTTTTAAATAT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAAT
* * * *
1019582 ATGTTATGTGGTTTTGAAAATTATTTTTTTAAAAACAT
1 ATATTATATAGTTTTGAAAATTA-GTTTTTAAAAA-AT
* *
1019620 ATATTGTATAGTTTT-AAAAAT-GTTTTTAA
1 ATATTATATAGTTTTGAAAATTAGTTTTTAA
1019649 TTAATTTATT
Statistics
Matches: 232, Mismatches: 29, Indels: 37
0.78 0.10 0.12
Matches are distributed among these distances:
32 13 0.06
33 17 0.07
34 23 0.10
35 44 0.19
36 36 0.16
37 52 0.22
38 47 0.20
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (36 bp):
ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAAT
Found at i:1019558 original size:35 final size:35
Alignment explanation
Indices: 1019334--1019648 Score: 277
Period size: 35 Copynumber: 8.9 Consensus size: 35
1019324 TTGAAAATAC
* *
1019334 ATATTATATTGTTTTGAAAA--CGTTTTTTAAATATAT
1 ATATTATATAGTTTTGAAAATTAG-TTTTTAAA-A-AT
* ** * *
1019370 ATAATATATAGCTTTT-AAAAACA-TTTTGAAAAAC
1 ATATTATATAG-TTTTGAAAATTAGTTTTTAAAAAT
* * *
1019404 ATA-TATATAATTTTGAAAATTAGTTTCTAAATAT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAT
*
1019438 ATATTATATAATTTTGAAAATTAGTTTTTAAAATATAT
1 ATATTATATAGTTTTGAAAATTAGTTTTT-AAA-A-AT
1019476 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAAGT
1 ATATTATATAGTTTTGAAAATTAGTTTTT-AAAAA-T
1019513 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAT
* ** *
1019548 ATATTATATAGTTTTG-AATTTTTTTTTTAAATAT
1 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAT
* * * *
1019582 ATGTTATGTGGTTTTGAAAATTATTTTTTTAAAAACAT
1 ATATTATATAGTTTTGAAAATTA-GTTTTT-AAAA-AT
* *
1019620 ATATTGTATAGTTTT-AAAAAT-GTTTTTAA
1 ATATTATATAGTTTTGAAAATTAGTTTTTAA
1019649 TTAATTTATT
Statistics
Matches: 234, Mismatches: 31, Indels: 30
0.79 0.11 0.10
Matches are distributed among these distances:
32 4 0.02
33 11 0.05
34 43 0.18
35 51 0.22
36 35 0.15
37 43 0.18
38 47 0.20
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (35 bp):
ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAT
Found at i:1019596 original size:34 final size:35
Alignment explanation
Indices: 1019334--1019634 Score: 204
Period size: 38 Copynumber: 8.4 Consensus size: 35
1019324 TTGAAAATAC
* *
1019334 ATATTATATTGTTTTGAAA--ACGTTTTTTAAATATAT
1 ATATTATATAGTTTTGAAATTA-TTTTTTTAAA-A-AT
* * ** * *
1019370 ATAATATATAGCTTTT-AAA-AACATTTTGAAAAAC
1 ATATTATATAG-TTTTGAAATTATTTTTTTAAAAAT
* * * *
1019404 ATA-TATATAATTTTGAAAATTA-GTTTCTAAATAT
1 ATATTATATAGTTTTG-AAATTATTTTTTTAAAAAT
* * *
1019438 ATATTATATAATTTTGAAAATTAGTTTTTAAAATATAT
1 ATATTATATAGTTTTG-AAATTATTTTTTTAAA-A-AT
* *
1019476 ATATTATATAGTTTTGAAAATTAGTTTTTAAAAAAGT
1 ATATTATATAGTTTTG-AAATTATTTTTTTAAAAA-T
*
1019513 ATATTATATAGTTTTGAAAATTA-GTTTTTAAAAAT
1 ATATTATATAGTTTTG-AAATTATTTTTTTAAAAAT
* *
1019548 ATATTATATAGTTTTG-AATTTTTTTTTTAAATAT
1 ATATTATATAGTTTTGAAATTATTTTTTTAAAAAT
* * *
1019582 ATGTTATGTGGTTTTGAAAATTATTTTTTTAAAAACAT
1 ATATTATATAGTTTTG-AAATTATTTTTTT-AAAA-AT
*
1019620 ATATTGTATAGTTTT
1 ATATTATATAGTTTT
1019635 AAAAATGTTT
Statistics
Matches: 218, Mismatches: 32, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
32 4 0.02
33 10 0.05
34 40 0.18
35 38 0.17
36 46 0.21
37 33 0.15
38 47 0.22
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (35 bp):
ATATTATATAGTTTTGAAATTATTTTTTTAAAAAT
Found at i:1019603 original size:144 final size:141
Alignment explanation
Indices: 1019292--1019648 Score: 357
Period size: 144 Copynumber: 2.5 Consensus size: 141
1019282 AATATTTTGA
* * ** * * * *
1019292 AAATATATAATATATAATTTTTAAAA--ACATTTTTGAAAATACATATTATATTGTTTTGAAAAC
1 AAATATATATTATATAATTTTGAAAATTATGTTTTTAAAAATATATATTATATAGTTTTGAAAAT
*
1019355 GTTTTTTAAATATATATAATATATAGCTTTTAAAAACATTTTGAAAAACATATATATAATTTTGA
66 G-TTTTTAAATAAATATAATATATAGCTTTTAAAAACATTTTGAAAAACATATATATAATTTTGA
1019420 AAATTAGTTTCT
130 AAATTAGTTTCT
1019432 AAATATATATTATATAATTTTGAAAATTA-GTTTTTAAAATATATATATTATATAGTTTTGAAAA
1 AAATATATATTATATAATTTTGAAAATTATGTTTTTAAAA-ATATATATTATATAGTTTTGAAAA
* ** * * *
1019496 TTAGTTTTTAAA-AAAGTATATTATATAG-TTTTGAAAATTAGTTTTTAAAAATATATTATATAG
65 -T-GTTTTTAAATAAA-TATAATATATAGCTTTT-AAAAACA-TTTTGAAAAACATA-TATATAA
* ** *
1019559 TTTTG-AATTTTTTTTTT
124 TTTTGAAAATTAGTTTCT
* * ** * * * *
1019576 AAATATATGTTATGTGGTTTTGAAAATTATTTTTTTAAAAACATATATTGTATAGTTTTAAAAAT
1 AAATATATATTATATAATTTTGAAAATTATGTTTTTAAAAATATATATTATATAGTTTTGAAAAT
1019641 GTTTTTAA
66 GTTTTTAA
1019649 TTAATTTATT
Statistics
Matches: 181, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
140 24 0.13
141 8 0.04
142 37 0.20
143 25 0.14
144 67 0.37
145 20 0.11
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (141 bp):
AAATATATATTATATAATTTTGAAAATTATGTTTTTAAAAATATATATTATATAGTTTTGAAAAT
GTTTTTAAATAAATATAATATATAGCTTTTAAAAACATTTTGAAAAACATATATATAATTTTGAA
AATTAGTTTCT
Found at i:1019676 original size:4 final size:4
Alignment explanation
Indices: 1019652--1019714 Score: 85
Period size: 4 Copynumber: 16.0 Consensus size: 4
1019642 TTTTTAATTA
* *
1019652 ATTT ATTA ATTT ATCT ATTT ATTT ATTT ATTT ATTT ATTT -TTT CATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT -ATTT
1019700 ATTT ATTT A-TT ATTT
1 ATTT ATTT ATTT ATTT
1019715 GTTTCAGGTC
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
3 6 0.12
4 43 0.83
5 3 0.06
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:1019883 original size:16 final size:15
Alignment explanation
Indices: 1019862--1019892 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
1019852 GGCCGGCCGG
1019862 CATCCCGGGACTGACC
1 CATCCCGGGA-TGACC
1019878 CATCCCGGGATGACC
1 CATCCCGGGATGACC
1019893 GGTCATACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.19, C:0.42, G:0.26, T:0.13
Consensus pattern (15 bp):
CATCCCGGGATGACC
Found at i:1021148 original size:21 final size:22
Alignment explanation
Indices: 1021102--1021149 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
1021092 TTTCTTGCAA
1021102 CTTTT-ATTTTTATTTTTCATT
1 CTTTTAATTTTTATTTTTCATT
*
1021123 TTTTTAATTTGTTA-TTTT-ATT
1 CTTTTAATTT-TTATTTTTCATT
1021144 CTTTTA
1 CTTTTA
1021150 TTTACTCTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 12 0.52
22 8 0.35
23 3 0.13
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (22 bp):
CTTTTAATTTTTATTTTTCATT
Found at i:1021184 original size:12 final size:13
Alignment explanation
Indices: 1021163--1021208 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
1021153 ACTCTTGATC
1021163 TATTTATTTA-TT
1 TATTTATTTATTT
*
1021175 TATTTGTTTATTT
1 TATTTATTTATTT
*
1021188 TATTT-TATATTTT
1 TATTTATTTA-TTT
1021201 TATTTATT
1 TATTTATT
1021209 GTCGCTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 12 0.43
13 15 0.54
14 1 0.04
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (13 bp):
TATTTATTTATTT
Found at i:1022295 original size:16 final size:17
Alignment explanation
Indices: 1022274--1022305 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
1022264 TTCGCTAACC
1022274 CTTTTATTTT-TGTTCT
1 CTTTTATTTTGTGTTCT
1022290 CTTTTATTTTGTGTTC
1 CTTTTATTTTGTGTTC
1022306 ATCGTTTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.06, C:0.12, G:0.09, T:0.72
Consensus pattern (17 bp):
CTTTTATTTTGTGTTCT
Found at i:1026584 original size:164 final size:163
Alignment explanation
Indices: 1026336--1027674 Score: 1402
Period size: 164 Copynumber: 8.1 Consensus size: 163
1026326 GCTCAAGGCC
* *
1026336 AGAAGGGCTATCTGTCC-ACCAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGCTATCTG-CCAACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * * * *
1026400 TGCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTTGAGTTTGACTACGCTCAGCT
65 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGACTACACTCAGCT
* *
1026465 CCAAGGCACATCATTTGCAGTATAACTTAAGTCA
130 CCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * *
1026499 AGAAGGGTTATCTGCTAACAAAAGACCTTTGAGTTTGACTACACTCAGCTCCAAGGCACATCATT
1 AGAAGGGCTATCTGCCAAC-AAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
* * *
1026564 TGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACTAAAGACCCTTAAGTTCGATTACACTC
65 TGCAGCATAACTTAAGTCGAGAAGGGCTATCTG-C--C-AAAGACCCTTGAGTTCGACTACACTC
* * * * * *
1026629 AGCTTCAAGGGCATATCATTTACAGCATAACTCAAGGCT
126 AGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCG
* * *
1026668 AGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 AGAAGGGCTATCTGCCAACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * **
1026733 GCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTT--TCTACGTTCAGCTT
66 GCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGACTACACTCAGC-T
* * *
1026796 CGAAGGCACATCATTTGCAGTATAACTTAAGTCA
130 CCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * * * *
1026830 AGAAGGGTTATCTGCCAACTAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCAT
1 AGAAGGGCTATCTGCCAAC-AAAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCAT
* * * * * *
1026895 TTACAGCATAGCTCAAGGCCAGAAGGGCTATCTGTCCACCAAGA-CCTTCGAGTTCGACTACGCT
64 TTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG-CCA--AAGACCCTT-GAGTTCGACTACACT
* * *
1026959 CAGCTCCAAGGTACATCATTTGCAGAATAGCTTAAGTCG
125 CAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
1026998 AGAAGGGCTATCTG-C--CAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 AGAAGGGCTATCTGCCAACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * *
1027060 GCAGTATAACTTAAGTCAAGAAGGGTTATCTGCTAACAAAAGACCTTTGAGTTCGACTACACTCA
66 GCAGCATAACTTAAGTCGAGAAGGGCTATCTGC---C-AAAGACCCTTGAGTTCGACTACACTCA
*
1027125 GGTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
127 GCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * * * *
1027162 AGAAGGGTTATCTGCCAACTAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATATCAT
1 AGAAGGGCTATCTGCCAAC-AAAGACCTTTGAGTTCGACTACGCTCAGCTCCAA-GGCACATCAT
* * * * * * *
1027227 TTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTC
64 TTGCAGCATAACTTAAGTCGAGAAGGGCTATCTG---CCAAAGACCCTTGAGTTCGACTACACTC
* *
1027292 AGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCG
126 AGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCG
* * * * * *
1027330 AGAAAGGCTATCTG-C--CAAAGACCCTCGAGTTCGACTACGTTCAGCTTCGAAGGCACATTATT
1 AGAAGGGCTATCTGCCAACAAAGACCTTTGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATT
* * * * * *
1027392 TGCAGTATAACTTAAGTCAAGAAGGGTTATCTACCAACTAAAGACCCTTAAGTTCGATTACACTC
65 TGCAGCATAACTTAAGTCGAGAAGGGCTATCT-GC--C-AAAGACCCTTGAGTTCGACTACACTC
* * * * * * * *
1027457 AGCTTCAAGGGCATATCATTTACAACATAGCTCAAGGCC
126 AGCTCCAA-GGCACATCATTTGCAGCATAACTTAAGTCG
* * *
1027496 AGAAGGGCTATCTGCCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 AGAAGGGCTATCTGCCAACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * *** *
1027561 GCAGTATAGCTTAAGTCGAGAAGAGCTATCTGCCAAAGACCCCCAAGTTCGATTACACTCAGCTT
66 GCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGACTACACTCAGC-T
* * *
1027626 CGAGGGCACATCATTTGCAGCATAGCTTAAGTCG
130 CCAAGGCACATCATTTGCAGCATAACTTAAGTCG
1027660 AGAAGGGCTATCTGC
1 AGAAGGGCTATCTGC
1027675 TAAAGACCTT
Statistics
Matches: 986, Mismatches: 151, Indels: 77
0.81 0.12 0.06
Matches are distributed among these distances:
162 52 0.05
163 83 0.08
164 344 0.35
165 47 0.05
166 40 0.04
167 16 0.02
168 287 0.29
169 116 0.12
172 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (163 bp):
AGAAGGGCTATCTGCCAACAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
GCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGACTACACTCAGCTC
CAAGGCACATCATTTGCAGCATAACTTAAGTCG
Found at i:1027184 original size:332 final size:326
Alignment explanation
Indices: 1026336--1027693 Score: 1578
Period size: 332 Copynumber: 4.1 Consensus size: 326
1026326 GCTCAAGGCC
1026336 AGAAGGGCTATCTGTCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 AGAAGGGCTATCTG-CCA--AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * *
1026401 GCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCTTTGAGTTTGACTACGCTCAGCTC
63 GCAGAATAACTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGACTACACTCAGCTC
* * * * *
1026466 CAAGGCACATCATTTGCAGTATAACTTAAGTCAAGAAGGGTTATCTGCTAACAAAAGACCTTTGA
128 CAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAAAGACCCTTAA
* * * * *
1026531 GTTTGACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCT
193 GTTCGACTACACTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGCTATCT
* * * * * * *
1026596 GCCAACTAAAGACCCTT-AAGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAAC
258 GCC-AC-CAAGA-CCTTCAAGTTCGACTACACTCAGCTCCAA-GGCACATCATTTGCAGAATAGC
* * *
1026660 TCAAGGCT
319 TTAAGTCG
* *
1026668 AGAAGGGTTATCTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
1 AGAAGGGCTATCTG---CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTT
* * * * **
1026733 GCAGAATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTT--TCTACGTTCAGCTT
63 GCAGAATAACTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGACTACACTCAGC-T
* *
1026796 CGAAGGCACATCATTTGCAGTATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAAAGACCCTTA
127 CCAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAAAGACCCTTA
* * * * *
1026861 AGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAGCTCAAGGCCAGAAGGGCTAT
192 AGTTCGACTACACTCAGCTCCAA-GGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGCTAT
* * *
1026926 CTGTCCACCAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTTGCAGAATAGCT
256 CTG-CCACCAAGACCTTCAAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGAATAGCT
1026991 TAAGTCG
320 TAAGTCG
*
1026998 AGAAGGGCTATCTGCCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCA
1 AGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCA
* * * *
1027063 GTATAACTTAAGTCAAGAAGGGTTATCTGCTAACAAAAGACCTTTGAGTTCGACTACACTCAGGT
66 GAATAACTTAAGTCAAGAAGGGCTATCTGC---C-AAAGACCCTTGAGTTCGACTACACTCAGCT
*
1027128 CCAAGGCACATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTGCCAACTAAAGACCCTTA
127 CCAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAAAGACCCTTA
* * * * *
1027193 AGTTCGATTACACTCAGCTTCAAGGGCATATCATTTACAGCATAACTCAAGGCTAGAAGGGTTAT
192 AGTTCGACTACACTCAGCTCCAA-GGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGCTAT
* ** *
1027258 CTGTCACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCT
256 CTGCCACC-AAGACCTTCAAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGAATAGCT
1027323 TAAGTCG
320 TAAGTCG
* * * * *
1027330 AGAAAGGCTATCTGCCAAAGACCCTCGAGTTCGACTACGTTCAGCTTCGAAGGCACATTATTTGC
1 AGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGC
* * * * *
1027395 AGTATAACTTAAGTCAAGAAGGGTTATCTACCAACTAAAGACCCTTAAGTTCGATTACACTCAGC
65 AGAATAACTTAAGTCAAGAAGGGCTATCT-GC--C-AAAGACCCTTGAGTTCGACTACACTCAGC
* * * * * * * * * * *
1027460 TTCAAGGGCATATCATTTACAACATAGCTCAAGGCCAGAAGGGCTATCTGCCCAC-CAAGA-CCT
126 TCCAA-GGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAAAGACCCT
* * * * * * * *
1027523 TCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGAGAAGAGCT
190 T-AAGTTCGACTACACTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGCT
** * * * *
1027588 ATCTGCCA--AAGACCCCCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAG
254 ATCTGCCACCAAGACCTTCAAGTTCGACTACACTCAGC-TCCAAGGCACATCATTTGCAGAATAG
1027651 CTTAAGTCG
318 CTTAAGTCG
*
1027660 AGAAGGGCTATCTGCTAAAGACCTTCGAGTTCGA
1 AGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGA
1027694 TTATATTCAA
Statistics
Matches: 904, Mismatches: 104, Indels: 38
0.86 0.10 0.04
Matches are distributed among these distances:
327 77 0.09
329 22 0.02
330 113 0.12
331 122 0.13
332 414 0.46
333 112 0.12
334 44 0.05
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (326 bp):
AGAAGGGCTATCTGCCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCA
GAATAACTTAAGTCAAGAAGGGCTATCTGCCAAAGACCCTTGAGTTCGACTACACTCAGCTCCAA
GGCACATCATTTGCAGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACTAAAGACCCTTAAGTT
CGACTACACTCAGCTCCAAGGCACATCATTTACAGCATAACTCAAGGCGAGAAGGGCTATCTGCC
ACCAAGACCTTCAAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTC
G
Found at i:1028391 original size:33 final size:33
Alignment explanation
Indices: 1028327--1028545 Score: 108
Period size: 34 Copynumber: 6.6 Consensus size: 33
1028317 TTTATAGTTG
** **
1028327 AAATCATTTTGAAAAT-TATATATATGGTTTTTTT
1 AAAT-ATTTTGAAAATATATA-ATATAATTTTTAA
1028361 AAATATTTTGAAAATATATAATATAATTTTTAA
1 AAATATTTTGAAAATATATAATATAATTTTTAA
* * * *
1028394 AAACATTTTTGAAAATACATATTATATTGTTTTGAA
1 AAATA-TTTTGAAAATATATAATATAAT-TTTT-AA
* ** **
1028430 AACT-TTTTTTAAATATATATATATAGCTTTT-A
1 AAATATTTTGAAAATATATA-ATATAATTTTTAA
* ** *
1028462 AAACATTTTGAAAACGTAT-ATAT-ATTTTGAA
1 AAATATTTTGAAAATATATAATATAATTTTTAA
* * ** * *
1028493 AATTAGTTT-CTAATATATATTATAATTTTGAA
1 AAATATTTTGAAAATATATAATATAATTTTTAA
* *
1028525 AATTAGTTTTTAAAATATATA
1 AAATA-TTTTGAAAATATATA
1028546 TTTATAGTTT
Statistics
Matches: 138, Mismatches: 36, Indels: 22
0.70 0.18 0.11
Matches are distributed among these distances:
30 8 0.06
31 14 0.10
32 16 0.12
33 37 0.27
34 51 0.37
35 8 0.06
36 4 0.03
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.47
Consensus pattern (33 bp):
AAATATTTTGAAAATATATAATATAATTTTTAA
Found at i:1028558 original size:35 final size:36
Alignment explanation
Indices: 1028366--1028714 Score: 269
Period size: 34 Copynumber: 10.2 Consensus size: 36
1028356 TTTTTAAATA
* * * **
1028366 TTTTGAAAATATATA--ATATAATTTTTAAAAACA-
1 TTTTTAAAATATATATTATATAGTTTTGAAAATTAG
* *
1028399 TTTTTGAAAATACATATTATATTGTTTTGAAAACTT--
1 TTTTT-AAAATATATATTATATAGTTTTGAAAA-TTAG
*
1028435 TTTTT-AAATATATA-TATATAGCTTTT-AAAA-CA-
1 TTTTTAAAATATATATTATATAG-TTTTGAAAATTAG
* **
1028467 -TTTTGAAA-ACGTA-TATATA-TTTTGAAAATTAG
1 TTTTTAAAATATATATTATATAGTTTTGAAAATTAG
*
1028499 TTTCT--AATATATATTATA-A-TTTTGAAAATTAG
1 TTTTTAAAATATATATTATATAGTTTTGAAAATTAG
1028531 TTTTTAAAATATATATT-TATAGTTTTGAAAATTAG
1 TTTTTAAAATATATATTATATAGTTTTGAAAATTAG
*
1028566 TTTTTAAAAAAGTATATTATATAGTTTTGAAAATTAG
1 TTTTTAAAATA-TATATTATATAGTTTTGAAAATTAG
**
1028603 TTTTTAAAA-ATATATTATATAGTTTTG--AATTTT
1 TTTTTAAAATATATATTATATAGTTTTGAAAATTAG
* * * * *
1028636 TTTTTTAAATATATGTTATGTGGTTTTGAAAATTATT
1 TTTTTAAAATATATATTATATAGTTTTGAAAATTA-G
* * *
1028673 TTTTTAAAAACATATATTGTATAGTTTT-AAAAAT-G
1 TTTTT-AAAATATATATTATATAGTTTTGAAAATTAG
1028708 TTTTTAA
1 TTTTTAA
1028715 TTAATTTATT
Statistics
Matches: 259, Mismatches: 33, Indels: 47
0.76 0.10 0.14
Matches are distributed among these distances:
29 4 0.02
30 4 0.02
31 16 0.06
32 24 0.09
33 35 0.14
34 49 0.19
35 45 0.17
36 28 0.11
37 38 0.15
38 16 0.06
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (36 bp):
TTTTTAAAATATATATTATATAGTTTTGAAAATTAG
Found at i:1028662 original size:34 final size:35
Alignment explanation
Indices: 1028507--1028700 Score: 184
Period size: 36 Copynumber: 5.5 Consensus size: 35
1028497 AGTTTCTAAT
*
1028507 ATATATTATA-A-TTTTGAAAATTA-GTTTTTAAAA
1 ATATATTATATAGTTTTG-AAATTATTTTTTTAAAA
* *
1028540 TATATATT-TATAGTTTTGAAAATTAGTTTTTAAAAA
1 -ATATATTATATAGTTTTG-AAATTATTTTTTTAAAA
*
1028576 AGTATATTATATAGTTTTGAAAATTA-GTTTTTAAAA
1 A-TATATTATATAGTTTTG-AAATTATTTTTTTAAAA
* *
1028612 ATATATTATATAGTTTTG-AATTTTTTTTTTAAAT
1 ATATATTATATAGTTTTGAAATTATTTTTTTAAAA
* * *
1028646 ATATGTTATGTGGTTTTGAAAATTATTTTTTTAAAAA
1 ATATATTATATAGTTTTG-AAATTATTTTTTT-AAAA
*
1028683 CATATATTGTATAGTTTT
1 -ATATATTATATAGTTTT
1028701 AAAAATGTTT
Statistics
Matches: 134, Mismatches: 16, Indels: 16
0.81 0.10 0.10
Matches are distributed among these distances:
33 6 0.04
34 31 0.23
35 30 0.22
36 34 0.25
37 20 0.15
38 13 0.10
ACGTcount: A:0.38, C:0.01, G:0.09, T:0.52
Consensus pattern (35 bp):
ATATATTATATAGTTTTGAAATTATTTTTTTAAAA
Found at i:1028696 original size:72 final size:70
Alignment explanation
Indices: 1028508--1028714 Score: 226
Period size: 72 Copynumber: 2.9 Consensus size: 70
1028498 GTTTCTAATA
1028508 TATATTATA-A-TTTTGAAAATTAGTTTTTAAAATATATATTTATAGTTTTGAAAATTAGTTTTT
1 TATATTATATAGTTTTGAAAATTAGTTTTTAAAA-ATATATTTATAGTTTTG-AAATTAGTTTTT
1028571 AAAAAAG
64 AAAAAAG
** *
1028578 TATATTATATAGTTTTGAAAATTAGTTTTTAAAAATATATTATATAGTTTTG-AATTTTTTTTTT
1 TATATTATATAGTTTTGAAAATTAGTTTTTAAAAATATATT-TATAGTTTTGAAATTAGTTTTTA
*
1028642 AAATA-
65 AAAAAG
* * * * * *
1028647 TATGTTATGTGGTTTTGAAAATTATTTTTTTAAAAACATATATTGTATAGTTTTAAAAAT-GTTT
1 TATATTATATAGTTTTGAAAATTA-GTTTTT-AAAA-ATATATT-TATAGTTTTGAAATTAGTTT
1028711 TTAA
62 TTAA
1028715 TTAATTTATT
Statistics
Matches: 117, Mismatches: 13, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
69 21 0.18
70 27 0.23
71 12 0.10
72 54 0.46
73 3 0.03
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (70 bp):
TATATTATATAGTTTTGAAAATTAGTTTTTAAAAATATATTTATAGTTTTGAAATTAGTTTTTAA
AAAAG
Found at i:1028726 original size:12 final size:12
Alignment explanation
Indices: 1028711--1028770 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
1028701 AAAAATGTTT
*
1028711 TTAATTAATTTA
1 TTAATTTATTTA
*
1028723 TTAATTTATCTA
1 TTAATTTATTTA
*
1028735 TTTATTTATTTA
1 TTAATTTATTTA
*
1028747 TTTATTTTCATTTA
1 -TTAATTT-ATTTA
*
1028761 TTTATTTATT
1 TTAATTTATT
1028771 ATTTGTTTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
12 23 0.61
13 10 0.26
14 5 0.13
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.68
Consensus pattern (12 bp):
TTAATTTATTTA
Done.