Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000834.1 Hibiscus syriacus cultivar Beakdansim tig00001612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64004

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3733--3791
19
3.1
19
75
4
57
69
0
6
23
1.12
3734--3807
27
2.8
26
76
11
62
70
0
8
21
1.13
3830--3871
17
2.4
18
92
4
68
71
0
7
21
1.09
4362--4390
12
2.5
12
94
5
51
65
3
24
6
1.33
4554--4686
44
3.3
43
67
28
128
57
14
0
27
1.43
4494--4701
76
2.8
75
94
2
348
59
12
1
27
1.42
6648--6717
36
1.9
36
94
0
122
38
15
20
25
1.92
9638--9706
20
3.3
20
76
15
68
0
24
2
72
0.98
9661--9709
18
2.6
19
80
6
55
0
26
4
69
1.06
12627--12681
27
2.0
28
82
7
67
41
1
10
45
1.50
13486--13529
15
3.1
15
75
24
51
54
11
9
25
1.65
14489--14534
23
2.0
23
87
8
67
6
17
2
73
1.14
17152--17211
11
5.6
11
74
18
56
40
0
0
60
0.97
17321--17355
17
2.0
18
88
5
54
51
2
2
42
1.31
17855--17887
15
2.1
17
88
11
52
48
6
12
33
1.65
19326--19357
15
2.0
17
88
11
50
46
6
15
31
1.71
22212--22291
42
1.9
41
94
2
142
25
22
5
47
1.71
24714--24752
20
2.0
20
85
10
53
38
10
0
51
1.36
25288--25312
2
12.5
2
100
0
50
0
48
0
52
1.00
28712--28765
28
2.0
26
82
7
63
59
18
7
14
1.58
37774--37848
29
2.6
29
93
0
132
42
25
10
21
1.85
45117--45190
29
2.6
29
100
0
148
43
25
10
20
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45191--45220
13
2.3
13
100
0
60
13
23
46
16
1.82
50810--50869
14
4.3
14
74
4
50
56
21
11
10
1.64
52188--52221
14
2.5
14
90
4
52
17
38
20
23
1.93
52189--52232
13
3.3
13
87
3
52
18
34
22
25
1.96
54482--54551
12
5.8
12
73
9
54
17
14
17
51
1.77
54482--54553
24
3.0
24
84
8
101
18
13
16
51
1.77
54445--54553
48
2.3
49
85
6
143
20
16
15
47
1.82
54843--54882
20
2.0
20
95
0
71
20
32
20
27
1.97
55369--55531
65
2.5
64
80
10
188
32
19
24
23
1.97
55519--55576
20
2.6
22
89
10
84
31
20
22
25
1.98
56255--56306
25
2.0
27
82
14
65
46
1
23
28
1.63

Tables:   1

The End!