Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008342.1 Hibiscus syriacus cultivar Beakdansim tig00111069_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1228932

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 636 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1172487--1172516
14
2.1
14
100
0
60
40
13
20
26
1.89
1182155--1182206
2
26.0
2
96
0
95
51
0
0
48
1.00
1182276--1182346
27
2.7
26
78
6
72
33
15
11
39
1.83
1181819--1184090
388
5.9
389
94
4
4040
39
12
8
38
1.74
1182543--1182592
2
25.0
2
95
0
91
52
0
0
48
1.00
1182928--1182958
2
16.0
2
93
6
55
51
0
0
48
1.00
1183293--1183336
2
22.0
2
100
0
88
50
0
0
50
1.00
1183671--1183723
2
27.0
2
96
3
99
50
0
0
49
1.00
1185796--1185826
12
2.6
12
89
0
53
19
22
0
58
1.40
1187917--1187965
24
2.0
24
84
7
64
16
8
44
30
1.76
1189339--1189397
21
2.8
21
80
10
75
33
30
6
28
1.83
1189339--1189418
42
1.9
42
82
5
99
35
28
7
28
1.84
1189688--1189712
12
2.1
12
100
0
50
32
12
32
24
1.91
1193365--1193431
18
3.7
18
95
0
116
11
8
50
28
1.69
1193374--1193440
18
4.0
16
86
7
64
10
10
49
29
1.70
1197605--1197755
64
2.3
63
84
6
178
35
19
16
28
1.94
1198239--1198274
17
2.0
19
89
10
58
44
5
11
38
1.63
1198406--1198470
31
2.1
31
82
0
76
24
16
23
35
1.95
1198456--1198527
29
2.4
30
86
2
92
20
20
29
29
1.98
1201759--1201905
64
2.3
64
84
6
192
34
20
17
27
1.95
1202558--1202622
31
2.1
31
85
0
85
24
18
23
33
1.96
1202581--1202656
30
2.5
30
82
2
80
22
21
25
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1202608--1202679
29
2.4
30
86
2
92
20
20
29
29
1.98
1204810--1204874
27
2.4
27
97
0
121
29
27
10
32
1.90
1208090--1208153
20
3.4
20
66
29
59
45
18
4
31
1.70
1208045--1208160
35
3.2
36
90
4
173
43
18
5
31
1.72
1212627--1212717
34
2.6
36
86
8
125
42
20
4
31
1.72
1216752--1216784
16
2.0
17
94
5
59
42
18
0
39
1.50
1217191--1217241
27
1.9
27
84
4
68
43
21
1
33
1.64
1217215--1217297
35
2.3
37
93
6
152
44
18
6
31
1.73
1217210--1217324
35
3.3
35
85
8
128
42
18
6
32
1.77
1219896--1219921
13
2.0
13
100
0
52
38
38
0
23
1.55
1222766--1222792
6
4.5
6
100
0
54
14
33
14
37
1.88
1225500--1226151
228
2.9
226
88
0
957
16
24
30
28
1.96
1225330--1226151
453
1.8
452
83
1
1101
18
25
28
27
1.98
1227115--1227175
23
2.5
24
76
15
63
39
3
3
54
1.33

Tables:   1   2   3   4   5   6

The End!