Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008345.1 Hibiscus syriacus cultivar Beakdansim tig00111073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  297766

Tables:   1   2   

This is table  2  of  2  ( 170 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
193083--193461
116
3.2
117
82
4
300
36
11
22
29
1.90
193075--193548
59
8.1
59
78
6
333
35
12
22
29
1.90
193638--193773
44
3.1
44
92
2
218
40
6
22
30
1.79
193645--193776
45
3.0
45
94
1
221
40
6
21
31
1.80
195031--195075
19
2.4
18
86
13
65
68
4
8
17
1.32
195031--195081
19
2.7
19
85
11
61
64
5
9
19
1.44
195847--195891
19
2.4
18
85
7
63
46
13
8
31
1.74
199016--199048
2
17.0
2
93
6
59
48
0
0
51
1.00
204426--204507
21
3.9
21
66
13
60
41
2
1
54
1.21
204415--204515
42
2.4
40
80
18
109
45
1
0
51
1.19
211322--211358
2
18.5
2
100
0
74
51
0
0
48
1.00
211714--211739
12
2.2
12
100
0
52
42
0
0
57
0.98
211726--211760
18
1.9
18
100
0
70
37
5
5
51
1.50
221994--222073
32
2.5
32
91
0
133
37
20
13
28
1.91
222435--222523
44
2.0
44
100
0
178
43
2
13
40
1.56
222643--222676
2
17.0
2
100
0
68
50
0
0
50
1.00
224659--224756
39
2.5
39
88
4
137
47
2
0
50
1.12
228687--228735
2
24.5
2
91
0
80
46
2
2
48
1.25
236230--236258
3
9.7
3
100
0
58
31
0
0
68
0.89
242865--242964
27
3.7
27
87
2
148
22
48
5
25
1.70
243136--243197
24
2.6
23
82
10
70
16
62
4
16
1.48
245202--245375
84
2.1
84
92
0
294
35
25
30
8
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
245178--245387
30
7.2
30
87
7
281
35
26
29
9
1.88
245177--245387
114
1.9
114
88
2
325
35
26
29
9
1.88
249395--249424
4
7.8
4
92
7
53
23
0
0
76
0.78
249580--249673
42
2.2
42
96
0
170
26
25
25
22
2.00
261605--261664
22
2.6
24
79
15
72
46
3
1
48
1.28
264406--264444
2
19.5
2
100
0
78
51
0
0
48
1.00
265684--265723
6
6.7
6
94
0
71
50
17
0
32
1.47
268386--268432
22
2.1
23
84
4
60
72
2
10
14
1.21
268461--268526
31
2.2
30
84
10
82
74
1
7
16
1.12
268481--268585
44
2.4
42
74
20
99
71
0
11
16
1.19
268516--268564
25
2.0
25
84
8
64
73
0
12
14
1.10
268830--268882
20
2.6
21
75
22
58
66
0
3
30
1.10
268901--268935
3
11.7
3
100
0
70
65
0
0
34
0.93
269322--269429
37
2.9
37
97
0
198
36
9
12
41
1.76
272201--272728
261
2.0
261
96
0
975
39
14
18
27
1.89
273040--273074
2
17.5
2
100
0
70
48
0
0
51
1.00
273857--273966
31
3.4
31
72
14
105
21
22
20
35
1.96
273841--273965
66
1.9
66
89
0
196
20
22
23
34
1.97
275690--275723
15
2.3
15
89
0
50
2
23
0
73
0.97
282579--282641
18
3.5
18
84
0
90
23
19
31
25
1.98
282579--282653
18
4.2
17
80
10
78
25
18
32
24
1.97
283095--283120
13
2.0
13
100
0
52
46
0
7
46
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
284022--284088
21
3.5
20
66
29
56
13
32
29
23
1.93
284015--284086
36
2.0
36
97
0
135
16
30
31
20
1.95
284692--284725
15
2.3
15
94
0
59
17
23
29
29
1.97
290401--290472
36
2.0
37
94
2
128
16
31
30
20
1.95
291058--291092
15
2.3
15
95
0
61
17
22
31
28
1.96
297337--297383
19
2.4
19
82
7
58
29
14
34
21
1.93

Tables:   1   2

The End!