Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008348.1 Hibiscus syriacus cultivar Beakdansim tig00111079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57471
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Found at i:2826 original size:20 final size:20
Alignment explanation
Indices: 2801--2840 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
2791 AGCAACAGAA
*
2801 TAAAAATGATTCTATCTAAT
1 TAAAAATGATCCTATCTAAT
2821 TAAAAATGATCCTATCTAAT
1 TAAAAATGATCCTATCTAAT
2841 AACTAATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (20 bp):
TAAAAATGATCCTATCTAAT
Found at i:2869 original size:53 final size:53
Alignment explanation
Indices: 2797--2947 Score: 270
Period size: 53 Copynumber: 2.9 Consensus size: 53
2787 AATTAGCAAC
2797 AGAAT-AAAAA-TGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
1 AGAATAAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
2848 AGAATAAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
1 AGAATAAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
* *
2901 AGAATAAAAAACTGATTCTATCTAATTAAAACTGATCCAATCTAATA
1 AGAATAAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATA
2948 TTTAATTTAG
Statistics
Matches: 96, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
51 5 0.05
52 5 0.05
53 86 0.90
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (53 bp):
AGAATAAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
Found at i:2883 original size:20 final size:21
Alignment explanation
Indices: 2854--2893 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
2844 TAATAGAATA
*
2854 AAAAACTGATTCTATCTAATT
1 AAAAACTGATCCTATCTAATT
2875 AAAAA-TGATCCTATCTAAT
1 AAAAACTGATCCTATCTAAT
2894 AACTAATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (21 bp):
AAAAACTGATCCTATCTAATT
Found at i:2933 original size:20 final size:20
Alignment explanation
Indices: 2908--2946 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2898 AATAGAATAA
* *
2908 AAAACTGATTCTATCTAATT
1 AAAACTGATCCAATCTAATT
2928 AAAACTGATCCAATCTAAT
1 AAAACTGATCCAATCTAAT
2947 ATTTAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.18, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAACTGATCCAATCTAATT
Found at i:3326 original size:126 final size:128
Alignment explanation
Indices: 3100--3354 Score: 374
Period size: 126 Copynumber: 2.0 Consensus size: 128
3090 CTCTACCAAG
* * *
3100 CAAGGTATGGAAAGAAAATTACTTTTTCTCTCTAGTTTTTTCATCTTTCCTACCTAGCTCCTCAA
1 CAAGGCATGGAAAGAAAATTACTTTTTCTCTCTAG--TTTTCATCTTTCCTACCAAGCACCTCAA
* * *
3165 TGGAAAAAATATATGAACTCTCAATCTTTTACTAATCTCCTCTAATTTTTCATCTTTCCAATTTT
64 TGGAAAAAATATATGAACTCTCAAACCTTTACTAATCTCCTCTAATTTTTCATCATTCCAATTTT
3230 CAAGGCATGGAAAGAAAATTAC-TTTT-TCTCTAG-TTT-ATCTTTCCTACCAAGCACACCTCAA
1 CAAGGCATGGAAAGAAAATTACTTTTTCTCTCTAGTTTTCATCTTTCCTACCAAG--CACCTCAA
* *
3291 TGGAAAAAATATATGCACTTTCAAACCTTTACTAATCTCCTCTAATTTTTCATCATTCCAATTT
64 TGGAAAAAATATATGAACTCTCAAACCTTTACTAATCTCCTCTAATTTTTCATCATTCCAATTT
3355 CCTTTATGTT
Statistics
Matches: 115, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
124 14 0.12
125 3 0.03
126 66 0.57
128 7 0.06
129 4 0.03
130 21 0.18
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (128 bp):
CAAGGCATGGAAAGAAAATTACTTTTTCTCTCTAGTTTTCATCTTTCCTACCAAGCACCTCAATG
GAAAAAATATATGAACTCTCAAACCTTTACTAATCTCCTCTAATTTTTCATCATTCCAATTTT
Found at i:6349 original size:57 final size:57
Alignment explanation
Indices: 6256--6370 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
6246 ATACTAAATC
* *
6256 TGTTCAAGTTTTACATTTAGCAAGTCCTGACCATCAGCATCTCTTACAACACCCATT
1 TGTTCAAGTTTTACATTTAGCAACTCCTAACCATCAGCATCTCTTACAACACCCATT
*
6313 TGTTCAAGTTTTACATTTAGCAACTCCTAACTATCAGCATCTCTTACAACACCCATT
1 TGTTCAAGTTTTACATTTAGCAACTCCTAACCATCAGCATCTCTTACAACACCCATT
6370 T
1 T
6371 CTCTATCTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.35
Consensus pattern (57 bp):
TGTTCAAGTTTTACATTTAGCAACTCCTAACCATCAGCATCTCTTACAACACCCATT
Found at i:16937 original size:2 final size:2
Alignment explanation
Indices: 16930--16955 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
16920 AGCTTAATAA
16930 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
16956 TTTTATTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20081 original size:6 final size:6
Alignment explanation
Indices: 20070--20108 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
20060 ACTGTGATTG
* * *
20070 GCACTA GCACTA GCACTA GCACTA CCATTA CCACTA GCA
1 GCACTA GCACTA GCACTA GCACTA GCACTA GCACTA GCA
20109 ATATGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.33, C:0.36, G:0.13, T:0.18
Consensus pattern (6 bp):
GCACTA
Found at i:22613 original size:3 final size:3
Alignment explanation
Indices: 22605--22691 Score: 102
Period size: 3 Copynumber: 29.0 Consensus size: 3
22595 TATATATATT
* * * * *
22605 TAA TAA TAA TAA TAA TAA TTA TAT TTA TAA TAA TAA TAA TAT TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
22653 TAA TAA TAA TAA TAA TAT TTA TAG TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22692 ATAAATCAAA
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:22639 original size:24 final size:24
Alignment explanation
Indices: 22594--22691 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
22584 TTATGTATAT
*
22594 ATATATATATTTAATAATAATAATA
1 ATATTTATA-TTAATAATAATAATA
* *
22619 ATAATTATATTTATAATAATAATA
1 ATATTTATATTAATAATAATAATA
*
22643 ATATTTATAATAATAATAATAATA
1 ATATTTATATTAATAATAATAATA
*
22667 ATATTTATAGTAATAATAATAATA
1 ATATTTATATTAATAATAATAATA
22691 A
1 A
22692 ATAAATCAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 59 0.89
25 7 0.11
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (24 bp):
ATATTTATATTAATAATAATAATA
Found at i:23065 original size:89 final size:90
Alignment explanation
Indices: 22965--23151 Score: 236
Period size: 92 Copynumber: 2.1 Consensus size: 90
22955 ATGAACTTCC
* * *
22965 TCTTCTTCAGAT-GAGTTCTTCTCATTATGAACT-TTCTCT-GTAAAAGTTGATCCATCGAGTGA
1 TCTTCTTCAGATAGAGTTATTCTCATTATGAACTCTTC-CTAG-AAAAGTTAATCCATCAAGTGA
* * *
23027 TGGATTTGAGCAAAAGGTTGAACAAAT
64 TGAATTTAAACAAAAGGTTGAACAAAT
* * *
23054 TCTTCTTCAGATGACGAGTTATTCTCATTATGAACTCTTCCTAGCAATGTTAATCCATCAATTGA
1 TCTTCTTCAGAT-A-GAGTTATTCTCATTATGAACTCTTCCTAGAAAAGTTAATCCATCAAGTGA
23119 TGAATTTAAACAAAAGGTTGAACAAAT
64 TGAATTTAAACAAAAGGTTGAACAAAT
23146 TCTTCT
1 TCTTCT
23152 CATTATGAAC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
89 12 0.14
92 68 0.81
93 4 0.05
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (90 bp):
TCTTCTTCAGATAGAGTTATTCTCATTATGAACTCTTCCTAGAAAAGTTAATCCATCAAGTGATG
AATTTAAACAAAAGGTTGAACAAAT
Found at i:23267 original size:113 final size:112
Alignment explanation
Indices: 23055--23655 Score: 927
Period size: 113 Copynumber: 5.3 Consensus size: 112
23045 TGAACAAATT
* * * * * * *
23055 CTTCTTCAGATGACGAGTTATTCTCATTATGAACTCTTC-CTAGCAATGTTAATCCATCAATTGA
1 CTTCTTCAGAT---GAGTTCTTCTCATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAGTGA
**
23119 TGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTT-TTCTTC
62 TGAA-TTAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTC
*
23171 CTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA
23236 TTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
66 TT-AGGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
*
23284 CTTCTTCAGATGAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA
23349 TTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
66 TT-AGGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
* * *
23397 CTTCTTCAGATGAGTTCTTCTTATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAATGATGGA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA
*
23462 TTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
66 TTAG-GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
* * *
23510 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGA
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA
*
23575 TTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
66 TTAG-GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
23623 CTTCTTCAGATGAGTTCTTCTCATTATGAACTT
1 CTTCTTCAGATGAGTTCTTCTCATTATGAACTT
23656 AACTGACATT
Statistics
Matches: 462, Mismatches: 19, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
112 9 0.02
113 442 0.96
116 11 0.02
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (112 bp):
CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA
TTAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTC
Found at i:24589 original size:84 final size:84
Alignment explanation
Indices: 24490--24816 Score: 600
Period size: 84 Copynumber: 3.9 Consensus size: 84
24480 CTATGAGCGA
*
24490 ATTCATCTTTTAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
1 ATTCATCTTTCAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
* *
24555 AGAAGATGCTATGAGGCAT
66 AGAAGATGCTATGGGGCAC
24574 ATTCATCTTTCAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
1 ATTCATCTTTCAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
*
24639 AGAAGATGCTATGGGGCGC
66 AGAAGATGCTATGGGGCAC
24658 ATTCATCTTTCAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
1 ATTCATCTTTCAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
24723 AGAAGATGCTATGGGGCAC
66 AGAAGATGCTATGGGGCAC
* *
24742 ATTCATCTTTCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAAGAACACTTCC
1 ATTCATCTTTCAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
24807 AGAAGATGCT
66 AGAAGATGCT
24817 TTTCCATTGA
Statistics
Matches: 236, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 236 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (84 bp):
ATTCATCTTTCAAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCC
AGAAGATGCTATGGGGCAC
Found at i:33039 original size:15 final size:15
Alignment explanation
Indices: 33016--33047 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
33006 TGAAATGAAT
33016 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
33031 AATGCATGTATGCAA
1 AATGAATGTATGCAA
33046 AA
1 AA
33048 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:36358 original size:27 final size:28
Alignment explanation
Indices: 36328--36410 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 28
36318 AAATACTTGT
36328 AAATAA-AA-TAAACATATAAATATATGA
1 AAATAAGAAGTAAA-ATATAAATATATGA
* * *
36355 AAATAATAAGT-AAATATAAAAATTTTGA
1 AAATAAGAAGTAAAATATAAATA-TATGA
* *
36383 AAAAAAGAATTAAAAT-TAAATATATGA
1 AAATAAGAAGTAAAATATAAATATATGA
36410 A
1 A
36411 CTTTTAATTA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
27 19 0.42
28 21 0.47
29 5 0.11
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.28
Consensus pattern (28 bp):
AAATAAGAAGTAAAATATAAATATATGA
Found at i:38393 original size:3 final size:3
Alignment explanation
Indices: 38385--38467 Score: 89
Period size: 3 Copynumber: 28.0 Consensus size: 3
38375 TATATATATT
* * * *
38385 TAA TAA TAA TAA TAA TAA TAA T-A TAT TTA TAA TAA TAA TAT TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
38432 TAA TAA TAA TAA TATA TAG TAA TAA T-A TAA AAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
38468 ATCAAAATGG
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
2 4 0.06
3 58 0.89
4 3 0.05
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:39478 original size:23 final size:23
Alignment explanation
Indices: 39451--39507 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
39441 AAATTTATTC
* *
39451 GTTCGGTTAATATTTAAAA-AAC
1 GTTCGGTTAATAGTTAAAAGAAA
*
39473 GATTCGGTTAACAGTTAAAAGAAA
1 G-TTCGGTTAATAGTTAAAAGAAA
39497 GTTCGGTTAAT
1 GTTCGGTTAAT
39508 TCAATTAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 1 0.03
23 25 0.86
24 3 0.10
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (23 bp):
GTTCGGTTAATAGTTAAAAGAAA
Found at i:41235 original size:9 final size:10
Alignment explanation
Indices: 41215--41240 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
41205 AAAATTAAAA
41215 TTTAATTTTT
1 TTTAATTTTT
41225 TTTAATTTTT
1 TTTAATTTTT
41235 TTTAAT
1 TTTAAT
41241 ATATTGCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTAATTTTT
Found at i:43554 original size:15 final size:15
Alignment explanation
Indices: 43530--43560 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
43520 AAAAGTTTGA
*
43530 GAGTCGGTTACGTGT
1 GAGTCAGTTACGTGT
43545 GAGTCAGTTACGTGT
1 GAGTCAGTTACGTGT
43560 G
1 G
43561 GGGAAGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.13, G:0.39, T:0.32
Consensus pattern (15 bp):
GAGTCAGTTACGTGT
Found at i:44331 original size:28 final size:29
Alignment explanation
Indices: 44266--44373 Score: 78
Period size: 28 Copynumber: 3.7 Consensus size: 29
44256 AACAGAAGTT
* *
44266 TAAAGGACTAAACTAG-TAAAAAAAAGAAAC
1 TAAAGGAC-AAAATAGAT-AAAAACAGAAAC
* *
44296 TTAAAAGGCCAAAATA-ATAAAAACATAAAC
1 -T-AAAGGACAAAATAGATAAAAACAGAAAC
* * * *
44326 TTAAGGTCTAAATAGA-AAATACAGAAAC
1 TAAAGGACAAAATAGATAAAAACAGAAAC
*
44354 TAAAGGACAAAATATATAAA
1 TAAAGGACAAAATAGATAAA
44374 CAGTAACATA
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
28 32 0.53
29 5 0.08
30 10 0.17
31 7 0.12
32 6 0.10
ACGTcount: A:0.61, C:0.10, G:0.11, T:0.18
Consensus pattern (29 bp):
TAAAGGACAAAATAGATAAAAACAGAAAC
Found at i:45787 original size:3 final size:3
Alignment explanation
Indices: 45779--45842 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
45769 TGTATCATTG
* *
45779 TAA TAA TAA TAA T-A TAA TAA TAA TATT TAA T-A TTA TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA T-AA TAA TAA
45824 TAAA TAA T-A TAAA TAA TAA
1 T-AA TAA TAA T-AA TAA TAA
45843 AAAAAAGGAT
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
2 6 0.12
3 36 0.71
4 9 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:45822 original size:22 final size:20
Alignment explanation
Indices: 45779--45842 Score: 78
Period size: 19 Copynumber: 3.1 Consensus size: 20
45769 TGTATCATTG
45779 TAATAATAATAATAT-AATAA
1 TAAT-ATAATAATATAAATAA
*
45799 TAATATTTAATATTATAAATAA
1 TAATA--TAATAATATAAATAA
45821 TAATA-AATAATATAAATAA
1 TAATATAATAATATAAATAA
45840 TAA
1 TAA
45843 AAAAAAGGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 17 0.44
20 4 0.10
21 8 0.21
22 10 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TAATATAATAATATAAATAA
Found at i:46346 original size:127 final size:128
Alignment explanation
Indices: 46113--46354 Score: 328
Period size: 127 Copynumber: 1.9 Consensus size: 128
46103 ATCTTTAGGA
* *
46113 AGGGTGATAACTCGATTCCTATGTGATGAGGACGACTGGTTATATAGGGGTGACACGAATCCTAC
1 AGGGTGATAACTCGATTCCTACGTGATGAGGACGACTGGTTATACAGGGGTGACACGAATCCTAC
*
46178 GTGATGAGGAGGTCTGGTTGGGGGATGACACGGTTCCTACGTGATGAGGATGGTAGGCCATCTTT
66 --GATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACGTGATGAGGATGGTAGGCCATCTTT
* * * * *
46243 AGGGATGATAACTTGGTTCCTACGTGATGAGGATTG-CTGGTTAT-CAGGGGTGACATGACTCCT
1 AGGG-TGATAACTCGATTCCTACGTGATGAGGA-CGACTGGTTATACAGGGGTGACACGAATCCT
* * *
46306 AC-ATGAGGAGGTCTGGTCGGTGGATGACATGGTTCTTACGTGATGAGGA
64 ACGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACGTGATGAGGA
46355 CGTAAACATC
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
127 43 0.43
130 22 0.22
131 33 0.33
132 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.28
Consensus pattern (128 bp):
AGGGTGATAACTCGATTCCTACGTGATGAGGACGACTGGTTATACAGGGGTGACACGAATCCTAC
GATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACGTGATGAGGATGGTAGGCCATCTTT
Found at i:46483 original size:31 final size:31
Alignment explanation
Indices: 46439--46590 Score: 98
Period size: 31 Copynumber: 4.8 Consensus size: 31
46429 AGACAAATTC
* *
46439 GTTTCAAGCGAAACGACTCAAAGATGATTTT
1 GTTTCAAGAGAAACAACTCAAAGATGATTTT
* * * * *
46470 GTTTTAAGAGAAACTATCTC-AAGATACAAAATTA
1 GTTTCAAGAGAAAC-AACTCAAAGAT---GATTTT
* *
46504 GTTTCAAGGGAAACAACTCAAAGATTGGTTTCT
1 GTTTCAAGAGAAACAACTCAAAGA-TGATTT-T
* *
46537 -TTT-AATAGAAACAGACTCAAAG--GCTTTT
1 GTTTCAAGAGAAACA-ACTCAAAGATGATTTT
46565 GTTTCAAGAGAAACAAACTCAAAGAT
1 GTTTCAAGAGAAAC-AACTCAAAGAT
46591 ACTGTCTCAT
Statistics
Matches: 90, Mismatches: 18, Indels: 25
0.68 0.14 0.19
Matches are distributed among these distances:
28 1 0.01
29 7 0.08
30 16 0.18
31 26 0.29
32 16 0.18
33 4 0.04
34 19 0.21
35 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (31 bp):
GTTTCAAGAGAAACAACTCAAAGATGATTTT
Found at i:46540 original size:65 final size:65
Alignment explanation
Indices: 46377--46548 Score: 197
Period size: 65 Copynumber: 2.6 Consensus size: 65
46367 CAGGGAATGC
* * * * *
46377 TTCAAGGGAAACAGACTCAAAGAT-GATTGTTTCAATAG-AACTGTCTCAAGAGAGACAAATTCG
1 TTCAAGGGAAACA-ACTCAAAGATGGTTTGTTTTAATAGAAACTATCTCAAGAGACACAAATTAG
46440 T
65 T
* * * * *
46441 TTCAAGCGAAACGACTCAAAGATGATTTTGTTTTAAGAGAAACTATCTCAAGATACA-AAATTAG
1 TTCAAGGGAAACAACTCAAAGATG-GTTTGTTTTAATAGAAACTATCTCAAGAGACACAAATTAG
46505 T
65 T
*
46506 TTCAAGGGAAACAACTCAAAGATTGGTTTCTTTTAATAGAAAC
1 TTCAAGGGAAACAACTCAAAGA-TGGTTTGTTTTAATAGAAAC
46549 AGACTCAAAG
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
63 10 0.11
64 11 0.12
65 52 0.58
66 16 0.18
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (65 bp):
TTCAAGGGAAACAACTCAAAGATGGTTTGTTTTAATAGAAACTATCTCAAGAGACACAAATTAGT
Found at i:46737 original size:38 final size:38
Alignment explanation
Indices: 46695--46782 Score: 149
Period size: 38 Copynumber: 2.3 Consensus size: 38
46685 AAAGAAATAA
*
46695 ACTCAAAGATTTTTTTCATTTTGTTTCAAGTGAAACAG
1 ACTCAAAGATTTTTTTCATTTCGTTTCAAGTGAAACAG
**
46733 ACTCAAAGATTTTTTTTGTTTCGTTTCAAGTGAAACAG
1 ACTCAAAGATTTTTTTCATTTCGTTTCAAGTGAAACAG
46771 ACTCAAAGATTT
1 ACTCAAAGATTT
46783 CTCAAGAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (38 bp):
ACTCAAAGATTTTTTTCATTTCGTTTCAAGTGAAACAG
Found at i:46855 original size:35 final size:36
Alignment explanation
Indices: 46814--46918 Score: 142
Period size: 35 Copynumber: 2.9 Consensus size: 36
46804 GAGACAAAAC
* *
46814 TTTGTTTCAAGAGAAACATACTCAAGATTTTTCAT-
1 TTTGTTTCAAGTGAAACAGACTCAAGATTTTTCATG
* *
46849 TTTGTTTCAAGTGAAACAGACTCAAAATTTTT-TTG
1 TTTGTTTCAAGTGAAACAGACTCAAGATTTTTCATG
*
46884 TTTGTTTCAACTGAAACAGACTCAAAGATTTTTCA
1 TTTGTTTCAAGTGAAACAGACTC-AAGATTTTTCA
46919 AAAGAAACTG
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
34 1 0.02
35 51 0.85
36 8 0.13
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (36 bp):
TTTGTTTCAAGTGAAACAGACTCAAGATTTTTCATG
Found at i:47743 original size:20 final size:20
Alignment explanation
Indices: 47714--47751 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47704 CATAACATAC
* *
47714 AAATATATACATACAAATTG
1 AAATAAATACAAACAAATTG
47734 AAATAAATACAAACAAAT
1 AAATAAATACAAACAAAT
47752 ATTGCAACCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.24
Consensus pattern (20 bp):
AAATAAATACAAACAAATTG
Found at i:47960 original size:30 final size:30
Alignment explanation
Indices: 47909--48019 Score: 84
Period size: 30 Copynumber: 3.7 Consensus size: 30
47899 AAACAGAAGT
* *
47909 TTAAAGGACTAAACTAG-TAAAAAAAGAAAC
1 TTAAAGG-CCAAAATAGATAAAAAAAGAAAC
* *
47939 TTAAAAGGCCAAAATA-ATAAAAATATAAAC
1 TT-AAAGGCCAAAATAGATAAAAAAAGAAAC
* * * * *
47969 TTAAGGGTCTAAATAGA-AAATACAGAAAC
1 TTAAAGGCCAAAATAGATAAAAAAAGAAAC
*
47998 TTAAAGGACCAAAATATATAAA
1 TTAAAGG-CCAAAATAGATAAA
48020 CAGTAACATA
Statistics
Matches: 62, Mismatches: 14, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
29 25 0.40
30 29 0.47
31 8 0.13
ACGTcount: A:0.59, C:0.10, G:0.12, T:0.20
Consensus pattern (30 bp):
TTAAAGGCCAAAATAGATAAAAAAAGAAAC
Found at i:48022 original size:29 final size:29
Alignment explanation
Indices: 47797--48033 Score: 124
Period size: 29 Copynumber: 8.1 Consensus size: 29
47787 TTAAAATTAC
* *
47797 AAGGACCAAAAT-G-AAAATAGTAACTTA
1 AAGGACCAAAATAGAAAAACAGAAACTTA
* *
47824 AAGGACCAAAATAGTACAAACA-AGAATTTA
1 AAGGACCAAAATAG-AAAAACAGA-AACTTA
* * ** *
47854 AAGAACTAAAATAGCCAAACAGAAACTCA
1 AAGGACCAAAATAGAAAAACAGAAACTTA
* * * ** **
47883 AAGGGCTAAAACAGCCAAACAGAAGTTTA
1 AAGGACCAAAATAGAAAAACAGAAACTTA
* * *
47912 AAGGACTAAACTAGTAAAAAAAGAAACTTAA
1 AAGGACCAAAATAG-AAAAACAGAAACTT-A
* * *
47943 AAGG-CCAAAATAATAAAAATATAAACTT-
1 AAGGACCAAAAT-AGAAAAACAGAAACTTA
** *
47971 AAGGGTCTAAATAGAAAATACAGAAACTTA
1 AAGGACCAAAATAGAAAA-ACAGAAACTTA
* * * *
48001 AAGGACCAAAATATATAAACAGTAACATA
1 AAGGACCAAAATAGAAAAACAGAAACTTA
48030 AAGG
1 AAGG
48034 GCCTAACAAT
Statistics
Matches: 159, Mismatches: 40, Indels: 20
0.73 0.18 0.09
Matches are distributed among these distances:
27 12 0.08
28 10 0.06
29 70 0.44
30 61 0.38
31 6 0.04
ACGTcount: A:0.57, C:0.13, G:0.14, T:0.16
Consensus pattern (29 bp):
AAGGACCAAAATAGAAAAACAGAAACTTA
Found at i:49504 original size:13 final size:13
Alignment explanation
Indices: 49486--49511 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49476 AATAATATAA
49486 TAATAATTAATAT
1 TAATAATTAATAT
49499 TAATAATTAATAT
1 TAATAATTAATAT
49512 AAAATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAATAATTAATAT
Found at i:50168 original size:31 final size:32
Alignment explanation
Indices: 50125--50264 Score: 76
Period size: 31 Copynumber: 4.4 Consensus size: 32
50115 ATAAAATTCA
*
50125 TTTCAAGCGAAAC-GATTCAAAGACAATTTTG
1 TTTCAAGAGAAACAGATTCAAAGACAATTTTG
* * * *
50156 TTTTAAGAGAAACTG-TCTCAAGAGACAAAATTCG
1 TTTCAAGAGAAACAGAT-TCAA-AGAC-AATTTTG
* ***
50190 TTTCAAGGGAAAC-GACTT-AAAGATTGTTTTG
1 TTTCAAGAGAAACAGA-TTCAAAGACAATTTTG
* * ** *
50221 TTTTAATAGAAACAGGCTCAAATAC--TTTTG
1 TTTCAAGAGAAACAGATTCAAAGACAATTTTG
50251 TTTCAAGAGAAACA
1 TTTCAAGAGAAACA
50265 AACTCGAAGA
Statistics
Matches: 81, Mismatches: 20, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
30 17 0.21
31 26 0.32
32 13 0.16
33 7 0.09
34 17 0.21
35 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (32 bp):
TTTCAAGAGAAACAGATTCAAAGACAATTTTG
Found at i:50173 original size:67 final size:67
Alignment explanation
Indices: 50086--50242 Score: 194
Period size: 65 Copynumber: 2.4 Consensus size: 67
50076 TCAATGATGA
* *
50086 TTGTTTCAATAGAAACTGTCTCAAAAGAGATAAAATTCATTTCAAGCGAAACGA-TTCAAAGACA
1 TTGTTTTAATAGAAACTGTCTCAAAAGAGACAAAATTCATTTCAAGCGAAACGACTT-AAAGACA
50150 ATT
65 ATT
* * * ***
50153 TTGTTTTAAGAGAAACTGTCTC--AAGAGACAAAATTCGTTTCAAGGGAAACGACTTAAAGATTG
1 TTGTTTTAATAGAAACTGTCTCAAAAGAGACAAAATTCATTTCAAGCGAAACGACTTAAAGACAA
50216 TT
66 TT
* *
50218 TTGTTTTAATAGAAACAGGCTCAAA
1 TTGTTTTAATAGAAACTGTCTCAAA
50243 TACTTTTGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
65 53 0.70
66 2 0.03
67 21 0.28
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (67 bp):
TTGTTTTAATAGAAACTGTCTCAAAAGAGACAAAATTCATTTCAAGCGAAACGACTTAAAGACAA
TT
Found at i:50375 original size:63 final size:63
Alignment explanation
Indices: 50271--50393 Score: 192
Period size: 63 Copynumber: 2.0 Consensus size: 63
50261 AACAAACTCG
* * * *
50271 AAGATATTGTCTCAAGAGAGACAAAATTTTGTTTCCAAAGAAACAGACTCATAGATTTTTCAA
1 AAGAAATTGTCTCAAAAGAGACAAAATTTTGTTACCAAAGAAACAGACTCAAAGATTTTTCAA
* *
50334 AAGAAATTGTCTCAAAAGAGACAAAATTTTGTTACCAAAGAAATAGACTCAAAGTTTTTT
1 AAGAAATTGTCTCAAAAGAGACAAAATTTTGTTACCAAAGAAACAGACTCAAAGATTTTT
50394 TTTCATTTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (63 bp):
AAGAAATTGTCTCAAAAGAGACAAAATTTTGTTACCAAAGAAACAGACTCAAAGATTTTTCAA
Found at i:50445 original size:38 final size:39
Alignment explanation
Indices: 50373--50465 Score: 125
Period size: 38 Copynumber: 2.4 Consensus size: 39
50363 TGTTACCAAA
* ** *
50373 GAAATAGACTCAAAGTTTTTTTTTCATTTTGTTTCAAGT
1 GAAAAAGACTCAAAGAATTTTTTTCATTTCGTTTCAAGT
*
50412 GAAAAAGACTCAAAGAATTTTTTT-GTTTCGTTTCAAGT
1 GAAAAAGACTCAAAGAATTTTTTTCATTTCGTTTCAAGT
*
50450 GAAACAGACTCAAAGA
1 GAAAAAGACTCAAAGA
50466 TTTCTCAAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 27 0.56
39 21 0.44
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (39 bp):
GAAAAAGACTCAAAGAATTTTTTTCATTTCGTTTCAAGT
Found at i:50539 original size:35 final size:36
Alignment explanation
Indices: 50500--50599 Score: 134
Period size: 35 Copynumber: 2.9 Consensus size: 36
50490 GAGACAAAAC
* *
50500 TTGTTTCAAGGGAAACATACTCAAAGATTTTCAT-T
1 TTGTTTCAAGTGAAACAGACTCAAAGATTTTCATGT
**
50535 TTGTTTCAAGTGAAACAGACTCAAAGATTTTTTTGT
1 TTGTTTCAAGTGAAACAGACTCAAAGATTTTCATGT
*
50571 TTTTTTCAAGTG-AACAGACTC-AAGATTTT
1 TTGTTTCAAGTGAAACAGACTCAAAGATTTT
50600 TCAAAAGAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
34 8 0.14
35 39 0.66
36 12 0.20
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (36 bp):
TTGTTTCAAGTGAAACAGACTCAAAGATTTTCATGT
Found at i:51873 original size:13 final size:13
Alignment explanation
Indices: 51853--51889 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
51843 GCCTCTATGA
51853 TCTTTGTTTTTGC
1 TCTTTGTTTTTGC
51866 GT-TTTGTTTTTGC
1 -TCTTTGTTTTTGC
51879 TCTTTGTTTTT
1 TCTTTGTTTTT
51890 TTCTTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.00, C:0.11, G:0.16, T:0.73
Consensus pattern (13 bp):
TCTTTGTTTTTGC
Found at i:51900 original size:18 final size:20
Alignment explanation
Indices: 51879--51915 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51869 TTGTTTTTGC
51879 TCTTTG-TT-TTTTTCTTTT
1 TCTTTGTTTCTTTTTCTTTT
51897 TCTTTGTTTCTTTTTCTTT
1 TCTTTGTTTCTTTTTCTTT
51916 GCTTTTCTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.00, C:0.14, G:0.05, T:0.81
Consensus pattern (20 bp):
TCTTTGTTTCTTTTTCTTTT
Found at i:51906 original size:14 final size:15
Alignment explanation
Indices: 51889--51949 Score: 62
Period size: 14 Copynumber: 4.5 Consensus size: 15
51879 TCTTTGTTTT
51889 TTTCTTTT-TCTTTG
1 TTTCTTTTATCTTTG
51903 TTTCTTTT-TCTTTG
1 TTTCTTTTATCTTTG
*
51917 ---CTTTTCTCTTTG
1 TTTCTTTTATCTTTG
*
51929 TTTCTTTTATCTCT-
1 TTTCTTTTATCTTTG
51943 TTTCTTT
1 TTTCTTT
51950 CTGCTTTGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
11 5 0.12
12 6 0.15
14 21 0.51
15 9 0.22
ACGTcount: A:0.02, C:0.18, G:0.05, T:0.75
Consensus pattern (15 bp):
TTTCTTTTATCTTTG
Found at i:51908 original size:26 final size:26
Alignment explanation
Indices: 51885--51936 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
51875 TTGCTCTTTG
51885 TTTT-TTT-CTTTT-TCTTTGTTTCT
1 TTTTCTTTGCTTTTCTCTTTGTTTCT
51908 TTTTCTTTGCTTTTCTCTTTGTTTCT
1 TTTTCTTTGCTTTTCTCTTTGTTTCT
51934 TTT
1 TTT
51937 ATCTCTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 4 0.15
24 3 0.12
25 5 0.19
26 14 0.54
ACGTcount: A:0.00, C:0.15, G:0.06, T:0.79
Consensus pattern (26 bp):
TTTTCTTTGCTTTTCTCTTTGTTTCT
Found at i:51969 original size:41 final size:40
Alignment explanation
Indices: 51889--51969 Score: 92
Period size: 41 Copynumber: 2.0 Consensus size: 40
51879 TCTTTGTTTT
* * * **
51889 TTTCTTTTTCTTTGTTTCTTTTTCTTTGCTTTTCTCTTTG
1 TTTCTTTTTCTCTGTTTCTTTTGCTTTGATTTGATCTTTG
51929 TTTCTTTTATCTCT-TTTCTTTCTGCTTTGATTTGATCTTTG
1 TTTCTTTT-TCTCTGTTTCTTT-TGCTTTGATTTGATCTTTG
51970 CACTCTGTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
40 15 0.44
41 19 0.56
ACGTcount: A:0.04, C:0.17, G:0.09, T:0.70
Consensus pattern (40 bp):
TTTCTTTTTCTCTGTTTCTTTTGCTTTGATTTGATCTTTG
Found at i:55539 original size:19 final size:19
Alignment explanation
Indices: 55509--55558 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
55499 AGATAAACAT
**
55509 ATTAATTACATATGATACAA
1 ATTAA-TACATAACATACAA
55529 ATTAATACATAACATACAA
1 ATTAATACATAACATACAA
55548 A-TATATACATA
1 ATTA-ATACATA
55559 CAGATTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 2 0.07
19 20 0.74
20 5 0.19
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32
Consensus pattern (19 bp):
ATTAATACATAACATACAA
Found at i:55689 original size:30 final size:28
Alignment explanation
Indices: 55624--55689 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
55614 TAAATTTTTA
* *
55624 AATTAAAAGGACCAAAATGAAAAACAGT
1 AATTTAAAGGACCAAAATGAAAAACAGG
* *
55652 AACTTAAAGGACCAAAATAGTACAAACAGG
1 AATTTAAAGGACCAAAAT-G-AAAAACAGG
55682 AATTTAAA
1 AATTTAAA
55690 AAACTAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 16 0.52
29 1 0.03
30 14 0.45
ACGTcount: A:0.58, C:0.12, G:0.14, T:0.17
Consensus pattern (28 bp):
AATTTAAAGGACCAAAATGAAAAACAGG
Done.