genome.fa.s835.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000835.1 Hibiscus syriacus cultivar Beakdansim tig00001616_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113730

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4363--4515	45	3.7	40	72	22	122	32	13	26	28	1.93
4351--4558	78	2.6	77	85	3	263	34	12	24	28	1.92
6186--6362	64	2.8	64	85	0	228	26	19	21	32	1.97
6186--6410	64	3.5	64	80	6	197	27	20	20	31	1.98
10416--10569	45	3.7	42	71	21	121	31	12	27	28	1.93
10413--10612	78	2.5	78	87	3	267	33	12	25	30	1.92
11161--11194	2	17.0	2	100	0	68	50	0	0	50	1.00
24717--24754	18	2.1	18	90	9	60	21	7	0	71	1.11
28349--28389	16	2.6	15	85	11	55	80	2	0	17	0.82
28331--28390	22	2.7	22	89	5	86	73	6	0	20	1.05
28420--28475	21	2.5	23	82	8	62	62	0	10	26	1.28
28572--28618	18	2.5	19	80	19	62	80	4	8	6	1.00
29821--29886	18	3.2	21	72	20	68	72	1	0	25	0.93
29835--29894	3	21.7	3	73	21	51	70	1	0	28	0.97
29836--29894	5	10.8	5	83	8	55	71	1	0	27	0.96
30207--30777	86	6.7	86	83	3	609	24	16	21	36	1.94
31923--32150	95	2.6	83	76	16	242	32	18	17	31	1.94
31971--32171	95	2.1	95	88	0	294	33	15	14	35	1.89
36068--36092	5	5.0	5	100	0	50	80	0	0	20	0.72
36047--36088	18	2.4	18	80	11	52	76	7	0	16	1.00
36357--36409	19	2.8	19	97	0	97	22	28	16	32	1.96
36460--36592	21	6.4	21	70	3	117	24	18	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36505--36612	20	5.3	20	66	4	81	19	21	23	36	1.95
36478--36615	41	3.4	41	95	0	249	21	20	23	34	1.97
36604--36656	22	2.4	22	93	0	97	16	16	28	37	1.91
36768--36804	6	6.2	6	100	0	74	35	48	16	0	1.46
36801--36847	5	9.6	5	97	2	87	38	21	40	0	1.53
37327--37366	5	7.6	5	91	2	53	2	20	52	25	1.59
37464--37516	22	2.4	22	93	0	97	37	28	16	16	1.91
37505--37605	41	2.5	41	93	0	166	34	21	21	21	1.97
37536--37601	21	3.2	20	65	4	51	33	22	21	22	1.97
37760--37817	26	2.2	26	78	3	62	74	5	8	12	1.21
37852--37886	3	11.7	3	93	0	61	65	0	2	31	1.07
37887--37918	2	16.5	2	93	6	57	50	0	0	50	1.00
41218--41242	4	6.2	4	100	0	50	24	0	0	76	0.80
42709--42747	14	2.8	14	88	0	51	58	2	0	38	1.12
47007--47077	29	2.4	29	76	0	79	39	15	21	23	1.91
51524--51573	21	2.4	21	82	0	55	22	10	28	40	1.86
51567--51676	23	4.9	23	74	11	111	21	22	23	31	1.98
51546--51676	44	2.9	44	76	12	131	22	20	24	32	1.98
53070--53208	72	1.9	72	94	0	242	30	17	18	33	1.95
59041--59072	12	2.7	12	90	0	55	46	6	18	28	1.73
62563--62883	175	1.8	175	93	1	554	19	22	16	41	1.90
64678--64719	20	2.1	20	86	0	57	69	2	14	14	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64853--64945	45	2.1	45	81	0	105	38	13	17	30	1.89
64958--65062	43	2.5	42	83	7	131	27	16	22	33	1.95
75986--76061	38	2.0	38	100	0	152	65	10	0	23	1.23
78544--78593	21	2.4	21	86	6	66	70	10	0	20	1.16
81283--81316	15	2.3	15	94	0	59	52	14	8	23	1.69
81428--81507	40	2.0	40	95	0	142	36	16	16	31	1.91
82827--82880	15	3.6	15	82	9	65	42	24	7	25	1.80
89237--89289	20	2.7	20	81	0	61	26	16	28	28	1.97
90873--90936	29	2.2	30	88	8	96	43	15	1	39	1.56
93710--93781	21	3.4	21	98	0	135	31	12	19	36	1.89
96276--96370	2	50.5	2	68	22	55	52	3	0	44	1.17
96275--96370	24	4.0	25	71	15	76	53	3	0	43	1.16
96313--96468	18	8.3	18	67	18	86	47	5	2	44	1.38
96314--96480	49	3.4	49	73	12	171	46	4	2	45	1.39
96318--96511	98	2.0	98	95	0	352	46	5	4	43	1.48
96288--96531	13	18.3	13	68	18	103	47	5	4	43	1.45
96521--96560	18	2.2	18	100	0	80	60	5	5	30	1.40
96521--96614	18	5.2	18	72	19	63	53	4	3	39	1.37
96535--96652	54	2.2	54	87	3	166	47	2	5	44	1.38
96771--96816	2	22.0	2	86	8	65	45	2	2	50	1.26
96765--96834	20	3.9	19	77	17	69	41	4	5	48	1.46
97133--97206	19	3.9	19	89	5	107	25	31	0	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97133--97206	36	2.0	38	86	7	107	25	31	0	43	1.55
97297--97336	12	3.2	12	82	3	53	55	2	2	40	1.27
98117--98173	20	2.8	20	91	0	96	22	28	10	38	1.87
98385--98455	2	35.5	2	91	5	117	46	1	1	50	1.18
98536--98598	27	2.3	27	83	5	74	42	0	30	26	1.56
98566--98603	19	2.0	20	94	5	69	42	0	31	26	1.56
98522--98623	46	2.2	47	81	10	120	43	0	29	27	1.55
99293--99351	16	3.7	16	95	0	100	47	6	20	25	1.74

Tables:   1

The End!