genome.fa.s8350.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008350.1 Hibiscus syriacus cultivar Beakdansim tig00111084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  573897

Tables:   1   2   

This is table  2  of  2  ( 209 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389519--389579	31	2.0	31	90	0	95	40	4	9	44	1.59
389603--389645	22	2.0	22	100	0	86	51	9	0	39	1.34
389605--389653	22	2.2	22	88	3	71	55	10	0	34	1.34
389625--389758	30	4.3	30	76	18	114	50	6	0	43	1.28
389676--389735	15	4.0	15	86	0	84	48	1	0	50	1.11
392980--393030	2	25.5	2	100	0	102	50	0	0	49	1.00
397665--397745	32	2.6	31	75	14	85	34	9	4	50	1.57
398936--398972	19	1.9	20	94	5	67	51	0	0	48	1.00
398941--398975	17	2.0	17	88	5	52	51	0	0	48	1.00
407507--407550	20	2.1	21	87	8	63	61	6	2	29	1.34
417226--417329	49	2.1	49	98	0	199	23	25	17	34	1.96
435343--435419	21	3.7	21	75	3	84	18	19	28	33	1.95
435537--435563	6	4.5	6	100	0	54	33	51	14	0	1.43
436201--436286	19	4.4	19	73	9	75	43	19	19	17	1.89
444973--445047	36	2.1	36	100	0	150	26	45	2	25	1.67
445583--445619	13	2.8	13	87	0	56	16	45	21	16	1.84
445561--445606	18	2.6	18	96	0	83	17	50	17	15	1.79
445561--445634	18	4.4	18	75	16	77	17	47	18	16	1.83
445565--445643	31	2.5	31	87	0	113	17	44	20	17	1.87
446929--446963	18	1.9	18	88	0	52	54	0	17	28	1.43
453664--453702	2	19.5	2	100	0	78	48	0	0	51	1.00
454237--454395	60	2.7	60	92	0	273	32	20	13	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458996--459055	24	2.5	24	91	2	95	45	15	15	25	1.84
458988--459118	59	2.2	58	89	2	208	45	16	13	23	1.83
459063--459136	23	3.2	24	80	5	89	47	16	12	24	1.80
461584--461716	60	2.2	60	80	7	146	35	14	14	36	1.86
462550--462879	20	16.6	20	73	16	228	15	21	23	39	1.92
462633--462704	22	3.4	21	73	11	76	18	16	25	40	1.91
462656--462722	19	3.4	19	70	11	62	19	17	22	40	1.92
462613--462839	41	5.7	41	82	12	294	18	19	23	38	1.93
462610--462882	116	2.3	117	92	3	449	17	20	23	38	1.93
462749--462820	22	3.4	22	72	18	80	19	19	25	36	1.95
462770--462865	19	4.8	19	76	12	95	16	21	19	41	1.90
464801--464836	2	19.5	2	83	16	51	47	0	0	52	1.00
481489--481554	2	33.0	2	100	0	132	50	0	0	50	1.00
482125--482163	21	1.9	20	84	5	51	28	0	30	41	1.57
490778--490874	50	1.9	50	95	0	176	37	2	12	48	1.53
503609--503643	10	3.4	10	88	4	52	77	0	0	22	0.78
503608--503664	23	2.3	25	79	11	73	71	0	0	28	0.86
503626--503677	18	2.9	17	83	13	61	67	0	0	32	0.91
503637--503677	17	2.3	19	87	12	68	65	0	0	34	0.93
511219--511243	5	5.0	5	100	0	50	20	0	20	60	1.37
514827--514851	4	6.2	4	100	0	50	52	24	0	24	1.48
519026--519050	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523477--523550	38	1.9	38	86	5	105	39	6	6	47	1.57
523477--523553	33	2.2	37	82	15	92	38	7	7	45	1.62
527755--527806	22	2.4	22	96	3	97	21	30	34	13	1.92
527852--527910	29	2.0	29	90	0	91	22	32	33	11	1.90
533028--533103	36	2.1	36	97	0	143	31	10	14	43	1.79
533525--533554	15	2.0	15	100	0	60	13	26	46	13	1.80
538028--538103	36	2.1	36	97	0	143	31	10	14	43	1.79
539150--539201	15	3.1	16	89	10	70	71	0	0	28	0.87
539150--539200	8	6.4	8	74	17	52	72	0	0	27	0.85
539146--539201	21	2.8	19	81	7	67	69	0	0	30	0.89
547363--547450	45	2.0	45	100	0	176	46	18	6	28	1.74
548533--548571	16	2.4	16	95	0	69	41	25	12	20	1.88
549586--549630	19	2.3	19	88	11	65	35	20	4	40	1.72
558552--558609	2	31.5	2	78	16	63	44	0	0	55	0.99
558572--558634	25	2.6	25	73	16	60	38	0	0	61	0.96
558560--558647	34	2.5	34	94	3	149	40	0	0	59	0.98
558636--558687	25	2.0	27	92	7	90	21	3	30	44	1.70
560026--560056	6	5.3	6	96	3	55	29	0	0	70	0.87
561191--561268	31	2.6	30	76	10	86	39	10	11	38	1.76
561527--561629	15	6.5	15	79	15	109	44	0	1	53	1.11
561527--561586	30	2.0	30	100	0	120	50	0	0	50	1.00
561572--561676	22	4.7	22	68	12	61	39	0	8	52	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561594--561629	14	2.5	14	95	4	63	38	0	0	61	0.96
561609--561760	32	5.4	32	70	28	155	36	0	11	52	1.37
561527--561684	69	2.3	67	84	6	203	41	0	5	52	1.25
561609--562201	54	11.1	54	77	14	592	33	0	13	52	1.43
561686--561728	22	2.0	22	100	0	86	34	0	13	51	1.42
561785--561836	18	3.1	18	71	21	58	28	0	13	57	1.36
561708--562093	80	4.9	80	94	2	683	32	0	14	52	1.44
561713--562093	157	2.4	159	95	3	680	32	0	14	52	1.44
562056--562098	22	2.0	22	95	0	77	34	2	11	51	1.51
562078--562184	32	3.7	32	74	23	126	32	0	14	53	1.41
562110--562152	22	2.0	22	100	0	86	34	0	13	51	1.42
562132--562281	80	1.9	80	94	0	264	32	0	14	53	1.42
561868--562295	134	3.2	134	80	10	581	33	0	13	52	1.43
566852--566926	18	4.4	18	77	16	97	18	49	18	13	1.79
566856--566926	31	2.3	31	87	0	115	18	47	19	14	1.82
566905--566948	12	3.3	13	84	12	54	15	40	25	18	1.90
566923--566956	7	4.7	7	85	7	50	17	32	26	23	1.97
566925--566955	15	2.1	15	93	0	53	16	35	22	25	1.94
568241--568275	18	1.9	18	88	0	52	54	0	17	28	1.43
571978--572023	9	4.9	9	79	10	56	13	19	32	34	1.90
572028--572102	18	4.4	18	75	14	88	18	50	18	12	1.77
572099--572132	7	4.7	7	85	7	50	17	32	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572101--572131	15	2.1	15	93	0	53	16	35	22	25	1.94

Tables:   1   2

The End!