genome.fa.s8352.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008352.1 Hibiscus syriacus cultivar Beakdansim tig00111086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217463

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194--266	36	2.0	36	94	0	128	32	23	20	23	1.98
1135--1213	41	2.0	40	92	2	131	18	17	13	49	1.80
12342--12469	60	2.2	59	83	7	152	28	15	14	42	1.86
27165--27200	15	2.3	16	85	4	56	66	11	5	16	1.40
29519--29545	2	13.5	2	100	0	54	48	0	0	51	1.00
29545--29584	2	20.0	2	100	0	80	0	0	50	50	1.00
35141--35185	21	2.1	21	88	8	65	48	28	0	22	1.50
43217--43318	23	4.5	23	78	8	93	43	1	1	52	1.23
43477--43562	24	3.7	23	73	14	70	44	1	1	53	1.15
43540--43638	37	2.7	37	95	4	175	45	0	6	48	1.27
45268--45327	2	30.0	2	100	0	120	0	50	0	50	1.00
49857--49882	2	13.0	2	100	0	52	50	0	0	50	1.00
52723--52760	12	3.2	12	81	3	51	76	2	0	21	0.91
52985--53048	6	10.7	6	96	0	119	34	1	48	15	1.55
53354--53399	24	1.9	24	86	8	67	23	4	10	60	1.47
53994--54050	30	1.9	30	85	7	80	50	3	12	33	1.57
55668--55693	2	13.0	2	100	0	52	50	0	0	50	1.00
56108--56166	28	2.2	26	78	18	68	33	0	15	50	1.44
57882--57948	30	2.3	30	82	10	84	32	2	0	64	1.09
63204--63527	42	7.9	41	79	9	322	28	20	18	32	1.96
63199--63521	164	2.0	163	92	1	540	29	19	18	32	1.96
67795--68145	43	8.2	43	93	0	553	24	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76821--76855	2	17.5	2	100	0	70	51	0	0	48	1.00
77640--77675	16	2.2	17	90	5	56	41	8	19	30	1.81
77639--77677	17	2.3	18	82	13	55	43	7	17	30	1.77
78159--78608	182	2.5	181	92	1	742	28	15	12	43	1.82
78479--78832	112	3.2	112	93	0	566	28	15	11	44	1.81
78918--78965	20	2.4	20	79	6	62	18	20	10	50	1.76
78591--79125	293	1.8	293	89	1	840	28	14	12	44	1.81
78884--79238	112	3.2	112	89	2	525	26	15	12	45	1.82
79291--79568	111	2.5	112	90	0	432	25	16	13	44	1.84
78297--79568	405	3.1	404	90	1	1994	27	15	12	44	1.82
79466--79658	90	2.1	90	92	0	314	25	14	12	47	1.79
79354--79769	201	2.1	201	93	0	715	25	14	12	47	1.80
79557--79837	111	2.5	111	91	1	447	25	13	12	49	1.76
80318--80378	16	3.8	16	95	0	113	55	22	13	8	1.64
81416--81471	14	4.3	14	82	17	84	51	26	14	7	1.67
81409--81456	10	4.4	10	78	19	51	54	25	12	8	1.65
81409--81470	24	2.6	24	97	0	115	53	25	12	8	1.66
81698--81841	2	73.0	2	67	22	74	4	46	4	45	1.41
81709--81840	55	2.4	55	98	1	255	4	46	4	44	1.44
91450--91508	24	2.4	25	82	5	75	49	1	6	42	1.39
110984--111013	15	2.0	15	93	0	51	26	16	13	43	1.85
120696--120735	2	20.0	2	100	0	80	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125761--125799	15	2.7	15	84	4	53	53	0	2	43	1.14
126336--126382	22	2.1	22	84	0	58	53	0	4	42	1.20
127042--127068	14	1.9	14	100	0	54	37	3	7	51	1.48
127089--127777	344	2.0	343	93	2	1188	28	12	18	41	1.86
131295--131328	11	2.9	12	86	4	52	50	0	5	44	1.26
131691--131726	14	2.6	14	90	0	54	16	13	11	58	1.63
131771--131797	13	2.1	13	100	0	54	22	7	25	44	1.79
131995--132034	14	2.9	14	88	3	55	2	10	25	62	1.39
132101--132133	16	2.1	16	94	0	57	6	9	24	60	1.49
132961--133005	23	2.0	23	100	0	90	35	53	6	4	1.47
147772--147810	18	2.2	18	95	4	71	64	2	0	33	1.08
148504--148533	14	2.2	13	94	5	51	33	16	33	16	1.92
156700--156769	29	2.3	30	78	4	79	47	1	15	35	1.55
157287--157338	23	2.2	24	82	3	61	46	5	3	44	1.45
162526--162563	10	3.8	10	89	0	58	78	5	0	15	0.91
162520--162564	20	2.2	21	84	11	67	77	4	0	17	0.92
163153--163339	63	3.0	63	92	0	329	40	12	9	37	1.76
168165--168224	5	12.4	5	75	19	56	18	3	0	78	0.89
168157--168237	13	6.2	12	78	18	74	17	3	1	77	0.97
168165--168237	24	3.1	22	79	16	76	17	2	1	78	0.95
168163--168229	8	8.5	8	80	19	70	17	2	0	79	0.86
168157--168239	21	4.0	21	75	21	79	18	3	1	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168157--168246	39	2.3	39	79	9	105	16	4	1	77	0.98
168181--168248	34	2.0	34	83	11	86	17	4	1	76	1.03
171240--171312	15	4.8	15	75	14	60	80	5	12	1	0.93
171237--171312	26	2.9	25	79	13	66	80	6	11	1	0.96
171234--171298	11	5.8	11	82	13	62	80	6	13	0	0.90
171240--171312	7	9.7	7	73	26	53	80	5	12	1	0.93
171237--171286	25	2.0	26	84	11	68	82	6	12	0	0.85
172360--172394	18	1.9	18	88	0	52	20	8	28	42	1.81
172907--173969	106	10.0	106	94	0	1739	34	25	17	22	1.96
174103--174619	165	3.1	164	85	5	673	30	25	19	24	1.98
174087--174628	249	2.2	247	78	5	556	30	26	19	23	1.98
174074--174628	84	6.7	83	76	8	513	30	25	20	23	1.98
175589--175652	5	13.6	5	78	15	66	20	3	0	76	0.92
175589--175652	19	3.4	18	83	12	85	20	3	0	76	0.92
175592--175652	14	4.8	13	82	13	74	19	3	0	77	0.91
175589--175665	24	3.3	23	78	21	90	19	2	1	76	0.97
175597--175657	7	7.9	8	79	20	60	19	3	0	77	0.91
175589--175667	30	2.7	28	83	13	81	20	2	1	75	0.98
181441--181499	30	2.0	28	83	6	73	69	6	3	20	1.26
182684--182987	152	2.0	152	97	0	572	25	14	25	34	1.94
182836--183419	170	3.4	170	99	0	1132	24	17	25	33	1.96
183286--183401	46	2.6	45	82	10	123	25	18	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184151--184290	76	1.9	75	80	7	167	10	19	9	60	1.56
190948--191027	39	2.1	39	88	4	117	21	21	27	30	1.98
194735--194794	30	2.0	29	83	3	75	70	6	3	20	1.25
200211--200261	16	3.1	16	72	13	50	17	25	35	21	1.95
200723--200761	20	1.9	20	84	5	51	41	7	7	43	1.62
201647--201675	2	14.5	2	100	0	58	48	0	51	0	1.00
206173--206211	19	2.1	19	85	0	51	41	17	17	23	1.91
210975--211043	30	2.3	30	85	7	88	40	21	1	36	1.63
212363--212439	35	2.2	35	86	6	104	44	20	0	35	1.52
213360--213452	35	2.7	35	84	1	116	27	1	27	43	1.62

Tables:   1

The End!