Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008353.1 Hibiscus syriacus cultivar Beakdansim tig00111088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2583621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 4 of 13
Found at i:812831 original size:4 final size:4
Alignment explanation
Indices: 812824--818386 Score: 9946
Period size: 4 Copynumber: 1415.8 Consensus size: 4
812814 TACGTGCGTG
812824 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
812872 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TA-C
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
812919 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
812967 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813015 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
813063 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATA TCATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC T-ATC
813112 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813160 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813208 TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT- TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813255 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813303 TATC TA-C TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813350 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813398 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
813446 TATC TATA TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813494 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813542 TATC TATC TATC TATC TATC TATC TATC TATC TA-- TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
813588 TATC TATC TATC TCTC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813636 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813684 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813732 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813780 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813828 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813876 TATC TATC TATC TAATC --TC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC T-ATC TATC TATC TATC TATC TATC TATC TATC TATC
813923 TATC TATC TATC TATC TATC TATC TATC TATC TA-C TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
813970 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814018 TATC TAT- TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814065 TATC TATC TATC TA-- TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814111 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814159 TATC TATC TATC TATC TATC TATC TA-- TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814205 TATC TATC TATC TA-- TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814251 TATC TATC TATC TA-- TATC TATC TATC TATC TATC TA-C TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814296 TATC TATC TATC TATC TATC TATC TATC TATC TA-- TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814342 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814390 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814438 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* *
814486 TATC TATA TCTC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
814534 TATC TATC TATA TATC TATC TATC TATC TA-C TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
814581 TATC TATC TATC TATC --TC TATC TATC TATC TATC TATC TATC TATA
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
814627 TATC TATC TATC TA-- TATC TATC -ATC TATC TATC TATC TATA TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814672 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814720 TA-C TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814767 TATC TATC TATC TATC TATC TTATC TAT- TATC TATC TATC TAT- TATC
1 TATC TATC TATC TATC TATC -TATC TATC TATC TATC TATC TATC TATC
814814 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814862 TATC TATC TATC TATC TATC -ATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814909 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
814957 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815005 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TA-C TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815052 TA-- TATC TATC TATC TAATC --TC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC T-ATC TATC TATC TATC TATC TATC TATC TATC
815097 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TA--
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815143 TATC TATC TATC -ATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815190 TA-- TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815236 TATC TATC TATC TATC TA-- TATC TATC TATC -ATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815281 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815329 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
815377 TATC TATC TATC TATC TCTC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815425 TATC TATC TATC TATC TATC TATC TATC TATC TAT- TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815472 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815520 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
815568 TATC TATC TATA TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815616 TATC TATC TATC TATC TATC TATC TATC TAT- TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815663 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC -ATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815710 TATC TATC TATC TATC TATC TATC TATC --TC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815756 TATC TATC TATC TATC TATC TATC TATC TATC TAT- TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
815803 TATC TATC TATC TATC TATC TATC TATC TATC TATC TA-- TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
815849 TATC TATC TATC TATC TATC TATC TATC TCTC TATC TATC TATC TA--
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
815895 TATC TTATC TATC TATC TATC TATC TATC TA-C TCTC TATC TATC TATC
1 TATC -TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* *
815943 TATC TATC TATC TATA TATC TATC TATC TATC TATC TATC TATC TATA
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
815991 TATC TATC TAT- TATC TATC TATC TATC TATC TATC TATC TATC TATA
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816038 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC -ATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816085 TATC TATC TATC TAT- TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816132 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* * *
816180 TATC TA-- TATC TATC TATC TATC --TC TATC TATC TATC TATA TCTA
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
816224 TATC TATC TATC TATC TATC TATC TATC TCTC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816272 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816320 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TA-- TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
816366 TATC TATC TATC TATA TATC TATC TATC TATC TAT- TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* *
816413 TATC TCTA TATC TATC TCATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC T-ATC TATC TATC TATC TATC TATC TATC TATC
816462 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816510 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TA--
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816556 TATC TATC TATC TAT- TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816603 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816651 TATC TATC TA-- TATC TATC TATC TATC TATC --TC TATC TATC TAT-
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816694 TATC TATC TATC TATC TATC TATC TATC --TC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816740 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816788 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816836 TATC TATC TATC TATC TATC TA-- TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
816882 TATC TA-- TATC TATC TATC TATC TATC TATC TATC TATC TATC TATA
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* *
816928 TCTA TATC TATC TA-- TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
816974 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817022 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817070 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817118 TATC TATC TAT- TATC TATC TATC TA-C TATC TATC TATC TATC TA--
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817162 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817210 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817258 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817306 TATC TATC TATC TATC TATC TATC TAT- TATC TA-C TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817352 TATC TATC TATC TATC TATC --TC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817398 TATC TATC TATC TATC TATC TATC TATC TATC TATC TA-- TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817444 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC T-ATC
817493 TA-- TATC TATC TATC TATC TAT- TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
817538 TATC TATC TATC TATC TATC TATC TATC TATC TATAT TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TAT-C TATC TATC TATC
817587 TATC TATC TAT- TATC TATC TAT- TATC TATC TATC TATC TATC -ATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817632 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817680 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
817728 TATC TATC TATC TATC TATC TATC TATC TATC TATTA TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TA-TC TATC TATC TATC
817777 TATC TATC TATC TATC TTATC TATC TATC --TC TATC TATC TATC TATC
1 TATC TATC TATC TATC -TATC TATC TATC TATC TATC TATC TATC TATC
817824 TATC TATC TAT- TATC TATC TATC TATC --TC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817869 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
817917 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
817965 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT- TATA
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
818012 TATC TATC TATC TATC TATC TATC TATC TATC TATC -ATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
818059 TATC TATC TAT- TATC TCTC TATC TATC TATC TATC TA-C TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
818105 TATC TATC TATC TATC TTATC TAT- TAT- TATC TATC TATC TATC TATA
1 TATC TATC TATC TATC -TATC TATC TATC TATC TATC TATC TATC TATC
*
818152 TATC TA-- TATC TAT- TATA TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
818197 TATC TATTC TATC TA-- TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TA-TC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
*
818244 TATC TATC TATC TATC TATC TATC TATA TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
818292 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
818340 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
818387 AGAATCCTTA
Statistics
Matches: 5378, Mismatches: 58, Indels: 246
0.95 0.01 0.04
Matches are distributed among these distances:
2 70 0.01
3 125 0.02
4 5140 0.96
5 43 0.01
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (4 bp):
TATC
Found at i:818722 original size:6 final size:6
Alignment explanation
Indices: 818711--818740 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
818701 TAAATATATT
818711 AAATTA AAATTA AAATTA AAATT- AAATTA A
1 AAATTA AAATTA AAATTA AAATTA AAATTA A
818741 TAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATTA
Found at i:818760 original size:3 final size:3
Alignment explanation
Indices: 818738--818777 Score: 55
Period size: 3 Copynumber: 13.0 Consensus size: 3
818728 AAAATTAAAT
818738 TAA TAA -AA TATA TAAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A T-AA TAA TAA TAA TAA TAA TAA TAA TAA
818778 ATTATTTAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 2 0.06
3 27 0.79
4 4 0.12
5 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:822973 original size:40 final size:40
Alignment explanation
Indices: 822918--823001 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
822908 TCTTGTCCAA
* *
822918 AAAATGTAGGAATTTCCAAGTAAGATATAAAGATGATCCC-
1 AAAAGGTAGAAATTTCCAAGTAAGATATAAAGATGA-CCCT
*
822958 AAAAGGTAGAAATTTCCAAGTAAGATATCAAGATGACCCT
1 AAAAGGTAGAAATTTCCAAGTAAGATATAAAGATGACCCT
822998 AAAA
1 AAAA
823002 AAGGCTAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.23
Consensus pattern (40 bp):
AAAAGGTAGAAATTTCCAAGTAAGATATAAAGATGACCCT
Found at i:823926 original size:22 final size:22
Alignment explanation
Indices: 823898--823939 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
823888 GTCAAATCAA
823898 TTTAGGAACTAATTTTAAAAAG
1 TTTAGGAACTAATTTTAAAAAG
823920 TTTAGGAACTAATTTTAAAA
1 TTTAGGAACTAATTTTAAAA
823940 CCTAGATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (22 bp):
TTTAGGAACTAATTTTAAAAAG
Found at i:824007 original size:60 final size:58
Alignment explanation
Indices: 823941--824056 Score: 144
Period size: 60 Copynumber: 1.9 Consensus size: 58
823931 ATTTTAAAAC
* * *
823941 CTAGATCT-AAAAAAGTCTAAATTTAAGGACTAGATCTAAAAAAAATTCTAAATTTAAGGA
1 CTAGATCTAAAAAAAGTATAAA-TTAAGGACTA-AACTAAAAAAAA-TCTAAAATTAAGGA
* *
824001 CTAGATCTAAAAAAAAGTATTAATTAAGGACTAAACTATAAAAAATCTAAAATTAA
1 CTAGATCT-AAAAAAAGTATAAATTAAGGACTAAACTAAAAAAAATCTAAAATTAA
824057 TTGTACCACT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
59 10 0.20
60 18 0.37
61 10 0.20
62 11 0.22
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.28
Consensus pattern (58 bp):
CTAGATCTAAAAAAAGTATAAATTAAGGACTAAACTAAAAAAAATCTAAAATTAAGGA
Found at i:824028 original size:30 final size:31
Alignment explanation
Indices: 823941--824056 Score: 143
Period size: 31 Copynumber: 3.9 Consensus size: 31
823931 ATTTTAAAAC
823941 CTAGATCT--AAAAAAGTCTAAATTTAAGGA
1 CTAGATCTAAAAAAAAGTCTAAATTTAAGGA
*
823970 CTAGATCTAAAAAAAATTCTAAATTTAAGGA
1 CTAGATCTAAAAAAAAGTCTAAATTTAAGGA
* *
824001 CTAGATCTAAAAAAAAGTATTAA-TTAAGGA
1 CTAGATCTAAAAAAAAGTCTAAATTTAAGGA
* * *
824031 CTA-AACTATAAAAAA-TCTAAAATTAA
1 CTAGATCTAAAAAAAAGTCTAAATTTAA
824057 TTGTACCACT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 4 0.05
29 22 0.29
30 10 0.13
31 40 0.53
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.28
Consensus pattern (31 bp):
CTAGATCTAAAAAAAAGTCTAAATTTAAGGA
Found at i:825269 original size:25 final size:26
Alignment explanation
Indices: 825217--825269 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
825207 TTTTTTAATT
*
825217 AAAATATATTAAATTATAAGATAAATA
1 AAAATACATTAAA-TATAAGATAAATA
*
825244 AAAATACATTAAA-ATTAGATAAATA
1 AAAATACATTAAATATAAGATAAATA
825269 A
1 A
825270 TCATACTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 12 0.50
27 12 0.50
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (26 bp):
AAAATACATTAAATATAAGATAAATA
Found at i:825301 original size:20 final size:20
Alignment explanation
Indices: 825278--825324 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
825268 AATCATACTA
825278 ATTTTTTTGTAATTTTTCGG
1 ATTTTTTTGTAATTTTTCGG
* **
825298 ATTTTTTTGTATTTTTTTTG
1 ATTTTTTTGTAATTTTTCGG
825318 ATTTTTT
1 ATTTTTT
825325 ATATTTGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.13, C:0.02, G:0.11, T:0.74
Consensus pattern (20 bp):
ATTTTTTTGTAATTTTTCGG
Found at i:833062 original size:2 final size:2
Alignment explanation
Indices: 833055--833086 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
833045 AGTAATTTTA
833055 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
833087 TGTGTAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:835878 original size:22 final size:21
Alignment explanation
Indices: 835852--835894 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
835842 AATAATAGAT
*
835852 AACAATAAGTATAATGTAAAAG
1 AACAATAAATATAAT-TAAAAG
*
835874 AACAATAAATATACTTAAAAG
1 AACAATAAATATAATTAAAAG
835895 GATGTACTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.60, C:0.07, G:0.09, T:0.23
Consensus pattern (21 bp):
AACAATAAATATAATTAAAAG
Found at i:839297 original size:20 final size:20
Alignment explanation
Indices: 839252--839297 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
839242 GACCAACAAA
*
839252 ATCGCAATGCGATCGCTAAT
1 ATCGCAACGCGATCGCTAAT
* *
839272 -TCGCAACGCGATCTCTATT
1 ATCGCAACGCGATCGCTAAT
839291 ATCGCAA
1 ATCGCAA
839298 ATTCGCGTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATCGCTAAT
Found at i:839442 original size:20 final size:19
Alignment explanation
Indices: 839417--839543 Score: 92
Period size: 20 Copynumber: 6.3 Consensus size: 19
839407 TTGGGAAAAT
*
839417 CAATGCGATGCTTACTATCG
1 CAATGCGATAC-TACTATCG
839437 CAATGCGATACTACTATCG
1 CAATGCGATACTACTATCG
* *
839456 CAATGCGATAATACAAAATCG
1 CAATGCGATACTAC--TATCG
* * *
839477 CAACGAGATACTAACTTTCG
1 CAATGCGATACT-ACTATCG
* * *
839497 CAACGCGATTCTGACTTTCG
1 CAATGCGATACT-ACTATCG
* *
839517 CAACGCGATAATACATAATCG
1 CAATGCGATACTAC-T-ATCG
839538 CAATGC
1 CAATGC
839544 AATTTTCAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
19 23 0.26
20 41 0.47
21 21 0.24
22 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (19 bp):
CAATGCGATACTACTATCG
Found at i:839479 original size:21 final size:19
Alignment explanation
Indices: 839433--839471 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
839423 GATGCTTACT
* *
839433 ATCGCAATGCGATACTACT
1 ATCGCAATGCGATAATACA
839452 ATCGCAATGCGATAATACA
1 ATCGCAATGCGATAATACA
839471 A
1 A
839472 AATCGCAACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (19 bp):
ATCGCAATGCGATAATACA
Found at i:839739 original size:22 final size:22
Alignment explanation
Indices: 839711--839754 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
839701 CACTCTCTCA
839711 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
839733 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
839755 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:840053 original size:20 final size:20
Alignment explanation
Indices: 840014--840072 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
840004 GCGATTCTCT
* **
840014 CGTTGCAATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
840034 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
840054 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
840073 AGAAACTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:841357 original size:18 final size:18
Alignment explanation
Indices: 841336--841380 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
841326 TCCACTTCGG
*
841336 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
841354 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
841372 GAGCCATCA
1 GAGCCATCA
841381 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:841855 original size:20 final size:20
Alignment explanation
Indices: 841832--841875 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
841822 AGTTTACTTT
841832 GCAACACGAAAATGACTATC
1 GCAACACGAAAATGACTATC
* * * *
841852 GCAACGCGGAAATGGCTATT
1 GCAACACGAAAATGACTATC
841872 GCAA
1 GCAA
841876 TGCGAAATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.16
Consensus pattern (20 bp):
GCAACACGAAAATGACTATC
Found at i:841884 original size:19 final size:20
Alignment explanation
Indices: 841841--841896 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
841831 TGCAACACGA
841841 AAATGACTATCGCAACGCGG
1 AAATGACTATCGCAACGCGG
* * *
841861 AAATGGCTATTGCAATGC-G
1 AAATGACTATCGCAACGCGG
**
841880 AAATGAAAATCGCAACG
1 AAATGACTATCGCAACG
841897 ACAAAATCGC
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGG
Found at i:841904 original size:14 final size:14
Alignment explanation
Indices: 841885--841943 Score: 73
Period size: 14 Copynumber: 3.9 Consensus size: 14
841875 ATGCGAAATG
841885 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
841899 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
841915 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
841931 AAAATCGCAACGA
1 AAAATCGCAACGA
841944 AATGAAAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 22 0.56
16 8 0.21
18 9 0.23
ACGTcount: A:0.49, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:841927 original size:32 final size:33
Alignment explanation
Indices: 841872--841957 Score: 151
Period size: 32 Copynumber: 2.7 Consensus size: 33
841862 AATGGCTATT
841872 GCAATGCGAAATGAAAATCGCAACGACAAAATC
1 GCAATGCGAAATGAAAATCGCAACGACAAAATC
841905 GCAATGCGAAATG-AAATCGCAACGACAAAATC
1 GCAATGCGAAATGAAAATCGCAACGACAAAATC
841937 GCAA--CGAAATGAAAATCGCAA
1 GCAATGCGAAATGAAAATCGCAA
841958 TGCGATTTGT
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
30 7 0.13
31 9 0.17
32 23 0.44
33 13 0.25
ACGTcount: A:0.49, C:0.21, G:0.19, T:0.12
Consensus pattern (33 bp):
GCAATGCGAAATGAAAATCGCAACGACAAAATC
Found at i:842055 original size:33 final size:32
Alignment explanation
Indices: 841969--842078 Score: 186
Period size: 33 Copynumber: 3.4 Consensus size: 32
841959 GCGATTTGTG
*
841969 TTTCGCGTTGCGATTTGTCGTTGCGA-TTTCA
1 TTTCGCATTGCGATTTGTCGTTGCGATTTTCA
*
842000 TTTCGCATTGTGATTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTGTCGTTGCGATTTTCA
842032 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGA-TTTGTCGTTGCGATTTTCA
842065 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
842079 AGCCATTTCC
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
31 24 0.32
32 18 0.24
33 32 0.43
ACGTcount: A:0.12, C:0.18, G:0.23, T:0.47
Consensus pattern (32 bp):
TTTCGCATTGCGATTTGTCGTTGCGATTTTCA
Found at i:842097 original size:20 final size:19
Alignment explanation
Indices: 842063--842118 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
842053 TTGCGATTTT
*
842063 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
842082 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
842102 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
842119 TTAAGTTTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:844137 original size:14 final size:14
Alignment explanation
Indices: 844118--844171 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
844108 GAAACTGACT
844118 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
844132 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
844151 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
844165 ATCGCAA
1 ATCGCAA
844172 TGCGATTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 11 0.31
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:844194 original size:19 final size:19
Alignment explanation
Indices: 844166--844219 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
844156 AACGAGAAAA
*
844166 TCGCAATGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
844185 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
844204 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
844220 TAGTTGCGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:844245 original size:20 final size:20
Alignment explanation
Indices: 844222--844289 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
844212 CGATTTTCTA
844222 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
* *** *
844242 GTTGCGTTTTTTCA-TTTCGA
1 GTTGCG-ATAGCCATTTTCGC
*
844262 ATTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
844282 GTTGCGAT
1 GTTGCGAT
844290 TTCCCCGTTG
Statistics
Matches: 34, Mismatches: 12, Indels: 4
0.68 0.24 0.08
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.41
Consensus pattern (20 bp):
GTTGCGATAGCCATTTTCGC
Found at i:844247 original size:34 final size:34
Alignment explanation
Indices: 844202--844305 Score: 100
Period size: 40 Copynumber: 2.9 Consensus size: 34
844192 GCGATTTTCA
*
844202 TTTCGCATTGCGATTTTCTAGTTGCGATAGCCAT
1 TTTCGCGTTGCGATTTTCTAGTTGCGATAGCCAT
* *
844236 TTTCGCGTTGCGTTTTTTCATTTCGAATTGCGATAGCCAT
1 TTTCGCGTTGCG-ATTTTC---T--AGTTGCGATAGCCAT
* **
844276 TTTCGCGTTGCGATTTCCCCGTTGCGATAG
1 TTTCGCGTTGCGATTTTCTAGTTGCGATAG
844306 TCAAATGAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
34 20 0.36
35 5 0.09
38 1 0.02
39 4 0.07
40 26 0.46
ACGTcount: A:0.14, C:0.22, G:0.22, T:0.41
Consensus pattern (34 bp):
TTTCGCGTTGCGATTTTCTAGTTGCGATAGCCAT
Found at i:844521 original size:20 final size:20
Alignment explanation
Indices: 844496--844586 Score: 74
Period size: 20 Copynumber: 4.5 Consensus size: 20
844486 TTGAAGATGA
844496 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
844516 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
* **
844536 TTGCGATTTTGTATTATCTCG
1 TTGCGATTTT-CAGAATCTCG
** * * *
844557 TTGCGATAGTCAGTATCGCA
1 TTGCGATTTTCAGAATCTCG
844577 TTGCGATTTT
1 TTGCGATTTT
844587 TCAAATTCGC
Statistics
Matches: 53, Mismatches: 17, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
20 38 0.72
21 15 0.28
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:844890 original size:20 final size:20
Alignment explanation
Indices: 844865--844918 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
844855 GATTTTGTAT
844865 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
844885 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
844905 TATCGCATTGCGAT
1 TATCGCATTGCGAT
844919 TTTCCCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:844937 original size:61 final size:61
Alignment explanation
Indices: 844825--844939 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 61
844815 CGCTATGTAA
* * * ** *
844825 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAATATCGCATTGCGATAGTAAGT
* *
844886 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT-TCGCGTTGCGAT
1 ATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAATATCGCATTGCGAT
844940 TTACTTATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
61 43 0.96
62 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (61 bp):
ATCGCATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAATATCGCATTGCGATAGTAAGT
Found at i:845416 original size:17 final size:17
Alignment explanation
Indices: 845394--845465 Score: 94
Period size: 17 Copynumber: 4.4 Consensus size: 17
845384 TACCCGATTA
845394 CCGGGTACCCGCAAAAT
1 CCGGGTACCCGCAAAAT
845411 CCGGGTACCCGCAAAAT
1 CCGGGTACCCGCAAAAT
**
845428 CCGGGTACCCG-ATTA-
1 CCGGGTACCCGCAAAAT
* *
845443 CCGGGTACCCGTAACAT
1 CCGGGTACCCGCAAAAT
845460 CCGGGT
1 CCGGGT
845466 CGGGACACGG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.22
16 4 0.08
17 34 0.69
ACGTcount: A:0.24, C:0.35, G:0.26, T:0.15
Consensus pattern (17 bp):
CCGGGTACCCGCAAAAT
Found at i:845539 original size:16 final size:16
Alignment explanation
Indices: 845501--845543 Score: 79
Period size: 15 Copynumber: 2.8 Consensus size: 16
845491 ACCCGGAAGT
845501 TCCGGGTACCCGAAAA
1 TCCGGGTACCCGAAAA
845517 T-CGGGTACCCGAAAA
1 TCCGGGTACCCGAAAA
845532 TCCGGGTACCCG
1 TCCGGGTACCCG
845544 GATTTGCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.26, C:0.33, G:0.28, T:0.14
Consensus pattern (16 bp):
TCCGGGTACCCGAAAA
Found at i:845609 original size:21 final size:21
Alignment explanation
Indices: 845569--845609 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
845559 ACTGTAGACC
**
845569 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
845590 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
845610 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:864261 original size:21 final size:21
Alignment explanation
Indices: 864228--864294 Score: 98
Period size: 21 Copynumber: 3.2 Consensus size: 21
864218 ATTCTGACTA
*
864228 TCGCATTGCGATTTCCCAAAT
1 TCGCGTTGCGATTTCCCAAAT
*
864249 TCGCGTTGTGATTTCCCAAAT
1 TCGCGTTGCGATTTCCCAAAT
* *
864270 TCGCGTTGCGATTTTCCTAAT
1 TCGCGTTGCGATTTCCCAAAT
864291 TCGC
1 TCGC
864295 AATGCGAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (21 bp):
TCGCGTTGCGATTTCCCAAAT
Found at i:864334 original size:21 final size:20
Alignment explanation
Indices: 864291--864419 Score: 195
Period size: 20 Copynumber: 6.4 Consensus size: 20
864281 TTTTCCTAAT
*
864291 TCGCAATGCGAATACGTAAA
1 TCGCAACGCGAATACGTAAA
** *
864311 TCGCAACGCGAATTTGAAAAA
1 TCGCAACGCGAATACG-TAAA
864332 TCGCAACGCGAATACGTAAA
1 TCGCAACGCGAATACGTAAA
864352 TCGCAACGCGAATACGTAAA
1 TCGCAACGCGAATACGTAAA
*
864372 TCGCAACGCGATTACGTAAA
1 TCGCAACGCGAATACGTAAA
*
864392 TCGCAACGCGATTACGTAAA
1 TCGCAACGCGAATACGTAAA
864412 TCGCAACG
1 TCGCAACG
864420 AGATTCTAAC
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
20 83 0.83
21 17 0.17
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (20 bp):
TCGCAACGCGAATACGTAAA
Found at i:865306 original size:24 final size:24
Alignment explanation
Indices: 865279--865332 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
865269 GTATTCGAAA
865279 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
865303 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
865327 TTTGAT
1 TTTGAT
865333 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:867900 original size:33 final size:33
Alignment explanation
Indices: 867850--867942 Score: 107
Period size: 33 Copynumber: 2.8 Consensus size: 33
867840 CTTAATGTCT
* * * *
867850 ATCGCAACGTGGAAATGAAAATCGTAACGAGAGA
1 ATCGCAACG-CGAAATGAAAATCGCAACGACAAA
* *
867884 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
867917 ATCGCAACGCGAAACT-AAAATCGCAA
1 ATCGCAACGCGAAA-TGAAAATCGCAA
867943 TGCGAAATGA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
33 42 0.82
34 9 0.18
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.14
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:867907 original size:19 final size:19
Alignment explanation
Indices: 867883--868052 Score: 120
Period size: 19 Copynumber: 9.7 Consensus size: 19
867873 GTAACGAGAG
867883 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
867902 AATCGCAAT--G--A-CAA
1 AATCGCAATGCGAAATGAA
*
867916 AATCGCAACGCGAAACT-AA
1 AATCGCAATGCGAAA-TGAA
867935 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
867954 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
* *
867968 AATTGCATTGCGAAATGAA
1 AATCGCAATGCGAAATGAA
**
867987 AATCGCAAT--G--A-GGG
1 AATCGCAATGCGAAATGAA
*
868001 AATCGCAAAGCGAAATGAA
1 AATCGCAATGCGAAATGAA
* *
868020 AATCGCAAAGCGAAATAAA
1 AATCGCAATGCGAAATGAA
*
868039 AATCGCAACGCGAA
1 AATCGCAATGCGAA
868053 TTTAGTTTCG
Statistics
Matches: 118, Mismatches: 16, Indels: 34
0.70 0.10 0.20
Matches are distributed among these distances:
14 27 0.23
15 3 0.03
16 4 0.03
17 4 0.03
18 4 0.03
19 76 0.64
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:867958 original size:85 final size:85
Alignment explanation
Indices: 867861--868048 Score: 279
Period size: 85 Copynumber: 2.2 Consensus size: 85
867851 TCGCAACGTG
* *
867861 GAAATGAAAATCGTAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGACAAAATCGCAACG
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGACAAAATCGCAAAG
*
867926 CGAAACT-AAAATCGCAATGC
66 CGAAA-TGAAAATCGCAAAGC
* * ***
867946 GAAATGAAAATCGCAACGAGAGAATTGCATTGCGAAATGAAAATCGCAATGAGGGAATCGCAAAG
1 GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGACAAAATCGCAAAG
868011 CGAAATGAAAATCGCAAAGC
66 CGAAATGAAAATCGCAAAGC
*
868031 GAAATAAAAATCGCAACG
1 GAAATGAAAATCGCAACG
868049 CGAATTTAGT
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
84 1 0.01
85 92 0.99
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.14
Consensus pattern (85 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGACAAAATCGCAAAG
CGAAATGAAAATCGCAAAGC
Found at i:867985 original size:33 final size:33
Alignment explanation
Indices: 867935--868027 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 33
867925 GCGAAACTAA
867935 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
* * * *
867968 AATTGCATTGCGAAATGAAAATCGCAATGAGGG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
*
868001 AATCGCAAAGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAA
868028 AGCGAAATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.45, C:0.16, G:0.24, T:0.15
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAG
Found at i:868090 original size:19 final size:19
Alignment explanation
Indices: 868053--868093 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
868043 GCAACGCGAA
* *
868053 TTTAGTTTCGTGTTGCGAT
1 TTTAGTTTCGCGTTACGAT
868072 TTTAGTTTCGCGTTACGAT
1 TTTAGTTTCGCGTTACGAT
868091 TTT
1 TTT
868094 GTCGTTGCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.12, G:0.22, T:0.54
Consensus pattern (19 bp):
TTTAGTTTCGCGTTACGAT
Found at i:868122 original size:19 final size:19
Alignment explanation
Indices: 868098--868153 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
868088 GATTTTGTCG
868098 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
868117 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
868131 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
868150 TTGC
1 TTGC
868154 AATAGTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 6 0.20
16 7 0.23
17 7 0.23
19 10 0.33
ACGTcount: A:0.12, C:0.23, G:0.18, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:868152 original size:33 final size:33
Alignment explanation
Indices: 868064--868153 Score: 128
Period size: 33 Copynumber: 2.7 Consensus size: 33
868054 TTAGTTTCGT
* * * *
868064 GTTGCGATTTT-AGTTTCGCGTTACGATTTTGTC
1 GTTGCGATTTTCA-TTTCGCATTGCGATTCTCTC
868097 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
868130 GTTGCGATTTTCATTTCGCATTGC
1 GTTGCGATTTTCATTTCGCATTGC
868154 AATAGTCATT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
33 51 0.98
34 1 0.02
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.47
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
Found at i:868282 original size:14 final size:14
Alignment explanation
Indices: 868263--868299 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
868253 CATCAATTAA
868263 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
868277 ACAAATCATCTTTT
1 ACAAATCAACTTTT
868291 ACAAATCAA
1 ACAAATCAA
868300 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:869719 original size:21 final size:21
Alignment explanation
Indices: 869653--869719 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
869643 TTGAATCGGG
*
869653 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
869673 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
869695 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
869716 CTCT
1 CTCT
869720 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:871652 original size:14 final size:14
Alignment explanation
Indices: 871633--871693 Score: 50
Period size: 14 Copynumber: 4.0 Consensus size: 14
871623 GAGAATGACT
*
871633 ATCGCAACGAGAGA
1 ATCGCAACGAGAAA
871647 ATCGCAACGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
*
871666 ATCGCAACGAGATA
1 ATCGCAACGAGAAA
*
871680 ATCGCAACGCGAAA
1 ATCGCAACGAGAAA
871694 TGAAAATCGC
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.44, C:0.23, G:0.23, T:0.10
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:871670 original size:19 final size:19
Alignment explanation
Indices: 871604--871710 Score: 81
Period size: 19 Copynumber: 6.1 Consensus size: 19
871594 TCTTTTGGTT
*
871604 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
**
871623 GAGAATGACTATCGCAA--C
1 GA-AATGAAAATCGCAACGC
*
871641 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
871657 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
871674 G--A-GATAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
871690 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
871709 GA
1 GA
871711 TTTTGGTTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
14 19 0.28
15 2 0.03
16 4 0.06
17 2 0.03
18 3 0.04
19 26 0.38
20 12 0.18
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:871670 original size:33 final size:33
Alignment explanation
Indices: 871612--871705 Score: 143
Period size: 33 Copynumber: 2.8 Consensus size: 33
871602 TTGAAATGAA
* **
871612 AATCGCAACGAGAGAATGACTATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAACGAGAG
*
871646 AATCGCAACGCGAAATGAAAATCGCAACGAGAT
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
871679 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
871706 TGCGATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
33 44 0.79
34 12 0.21
ACGTcount: A:0.45, C:0.21, G:0.22, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:871754 original size:33 final size:33
Alignment explanation
Indices: 871706--871786 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
871696 AAAATCGCAA
**
871706 TGCGATTTTGGTTTCGCGTTACGATTATCTCGT
1 TGCGATTTTCATTTCGCGTTACGATTATCTCGT
* *
871739 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTACGATTATCTCGT
871772 TGCGATTTTCATTTC
1 TGCGATTTTCATTTC
871787 TCTCGTTGCG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTACGATTATCTCGT
Found at i:871789 original size:21 final size:20
Alignment explanation
Indices: 871770--871841 Score: 92
Period size: 20 Copynumber: 3.5 Consensus size: 20
871760 CGATTCTCTC
871770 GTTGCGATTTTCATTTCTC-T
1 GTTGCGATTTTCATTT-TCAT
** *
871790 CGTTGCGATAGTCATTTTCGT
1 -GTTGCGATTTTCATTTTCAT
871811 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTCAT
871831 GTTGCGATTTT
1 GTTGCGATTTT
871842 AAGTTTAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
20 30 0.67
21 15 0.33
ACGTcount: A:0.12, C:0.17, G:0.19, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCAT
Found at i:872424 original size:20 final size:20
Alignment explanation
Indices: 872399--872550 Score: 171
Period size: 20 Copynumber: 7.5 Consensus size: 20
872389 CTTTAAAAAT
872399 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
872419 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
872439 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
* * *
872460 CGCATTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
* * *
872480 CTCGTTACGATTTACAGATA
1 CGCGTTGCGATTTACGGATA
* *
872500 CGCGTTGCGATTTACGTATT
1 CGCGTTGCGATTTACGGATA
*
872520 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
872540 CTCGTTGCGAT
1 CGCGTTGCGAT
872551 AGTCAGAATC
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
20 91 0.84
21 17 0.16
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:872485 original size:40 final size:40
Alignment explanation
Indices: 872401--872550 Score: 246
Period size: 40 Copynumber: 3.7 Consensus size: 40
872391 TTAAAAATCG
*
872401 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGA-TTTACGTATTCT
*
872442 CGTTGCGATTTACGGATACGCATTGCGATTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTACGTATTCT
* *
872482 CGTTACGATTTACAGATACGCGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTACGTATTCT
*
872522 CGTTGCGATTTACGGATACTCGTTGCGAT
1 CGTTGCGATTTACGGATACGCGTTGCGAT
872551 AGTCAGAATC
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 74 0.73
41 27 0.27
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.37
Consensus pattern (40 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTACGTATTCT
Found at i:872564 original size:60 final size:58
Alignment explanation
Indices: 872398--872591 Score: 190
Period size: 60 Copynumber: 3.2 Consensus size: 58
872388 GCTTTAAAAA
* * * *
872398 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGTCGTTGCGATTTACGGAT
1 TCGCGTTGCGATTTACGGATACTCGTTGCGATTTCA-G-ATCG-CGTTGCGATTTACGTAT
* * * * *
872459 ACGCATTGCGATTTACGTATTCTCGTTACGATTTACAGATACGCGTTGCGATTTACGTAT
1 TCGCGTTGCGATTTACGGATACTCGTTGCGATTT-CAGAT-CGCGTTGCGATTTACGTAT
* * * ** *
872519 TCTCGTTGCGATTTACGGATACTCGTTGCGATAGTCAGAATCGCGTTGCAATTTATATGT
1 TCGCGTTGCGATTTACGGATACTCGTTGCGAT-TTCAG-ATCGCGTTGCGATTTACGTAT
872579 TCGCGTTGCGATT
1 TCGCGTTGCGATT
872592 ATGGAAAATC
Statistics
Matches: 108, Mismatches: 21, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
60 74 0.69
61 33 0.31
62 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (58 bp):
TCGCGTTGCGATTTACGGATACTCGTTGCGATTTCAGATCGCGTTGCGATTTACGTAT
Found at i:872690 original size:20 final size:20
Alignment explanation
Indices: 872639--872694 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
872629 CAGTTCTTAA
872639 TAATCGCGTTGCGATTCTGG
1 TAATCGCGTTGCGATTCTGG
**
872659 TAA-CTGATTTGCGATTCTGG
1 TAATC-GCGTTGCGATTCTGG
872679 -AGATCGCGTTGCGATT
1 TA-ATCGCGTTGCGATT
872695 TGTATTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 2 0.07
20 26 0.90
21 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.36
Consensus pattern (20 bp):
TAATCGCGTTGCGATTCTGG
Found at i:873787 original size:14 final size:14
Alignment explanation
Indices: 873757--873804 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
873747 CACTAACTTA
*
873757 AAACCCTAAATTAT
1 AAACCCTAAACTAT
* **
873771 AAACCATAAACCCT
1 AAACCCTAAACTAT
873785 AAACCTCTAAACTAT
1 AAACC-CTAAACTAT
873800 AAACC
1 AAACC
873805 TTAATTCCTA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCCTAAACTAT
Found at i:887112 original size:35 final size:35
Alignment explanation
Indices: 887041--887113 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
887031 TGCAATAAAC
*
887041 TTACAATAAGAATTAAATGGTAAATGATAACCAAA
1 TTACAATAAGAATTAAATGGTAAATGATAACAAAA
887076 TTACAATAACTGATATTAAATGGT-AAT-A-AACAAAA
1 TTACAATAA--GA-ATTAAATGGTAAATGATAACAAAA
887111 TTA
1 TTA
887114 ACTAAAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
35 18 0.53
36 1 0.03
37 5 0.15
38 10 0.29
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (35 bp):
TTACAATAAGAATTAAATGGTAAATGATAACAAAA
Found at i:887726 original size:18 final size:18
Alignment explanation
Indices: 887703--887742 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
887693 AAAGGCGATG
887703 GCGGCATCATATATGGCT
1 GCGGCATCATATATGGCT
887721 GCGGCATCATATATGGCT
1 GCGGCATCATATATGGCT
887739 GCGG
1 GCGG
887743 TGGCTGCTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.25
Consensus pattern (18 bp):
GCGGCATCATATATGGCT
Found at i:889009 original size:111 final size:111
Alignment explanation
Indices: 888877--889098 Score: 381
Period size: 111 Copynumber: 2.0 Consensus size: 111
888867 ATTACAAAAA
* * * *
888877 TTAATTCTTAATCTAATAATCATGCATTAAATGAATTAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAAATAAATATTACTAATAATTTAAATTA
* *
888942 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAATGTCGAGATAT
66 AATTAAAACATTAAAATGTTACCGTATCAGCAAAATGTAGAGATAT
888988 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAAATAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAAATAAATATTACTAATAATTTAAATTA
*
889053 AATTAAAACATTAAAATGTTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACATTAAAATGTTACCGTATCAGCAAAATGTAGAGATAT
889099 ATGATTTTCA
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
111 104 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAAATAAATATTACTAATAATTTAAATTA
AATTAAAACATTAAAATGTTACCGTATCAGCAAAATGTAGAGATAT
Found at i:890083 original size:20 final size:19
Alignment explanation
Indices: 890060--890106 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
890050 CGATATACCA
890060 GGTAAAAATATGATAAAATC
1 GGTAAAAA-ATGATAAAATC
*
890080 GGTATCAAAATGATAAAATC
1 GGTA-AAAAATGATAAAATC
890100 GGTAAAA
1 GGTAAAA
890107 CGTTACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.23
Consensus pattern (19 bp):
GGTAAAAAATGATAAAATC
Found at i:890093 original size:181 final size:179
Alignment explanation
Indices: 889847--890320 Score: 678
Period size: 181 Copynumber: 2.6 Consensus size: 179
889837 TCGATCCAAA
* * * * **
889847 TTAAAAATGTGTCGATCCAAAACGATATAACAAGTAAAACTATGACAAAACCGGTATTGAAATGA
1 TTAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGA
* * * * *
889912 TAAAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAAGATCGACACT
66 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT-ATATAAAGATCGACACT
*
889977 TCGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTT
130 TCGTGAATTTAAAAGAGAAGCAG-TTTAAAGCCTATAAAGTGTCGATACTT
* *
890028 TTAAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAATCGGTATCAAAATGA
1 TTAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGA
* * * *
890093 TAAAATCGGTAAAACGTTACTGGATATATTGAAAGTGTCGATACTTTATATAAGGATCGACACTT
66 TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTATATAAAGATCGACACTT
* ** *
890158 TGTGAATTTAAAAGAGAAGCAGTTTAGCGCCTATAATGTGTCGATACTT
131 CGTGAATTTAAAAGAGAAGCAGTTTAAAGCCTATAAAGTGTCGATACTT
* ** *
890207 TAAAAAAAAATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATG
1 T-TAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATG
890272 ATAAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
65 AT-AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTT
890321 CGTAAGTATG
Statistics
Matches: 261, Mismatches: 30, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
179 24 0.09
180 97 0.37
181 140 0.54
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (179 bp):
TTAAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGA
TAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTATATAAAGATCGACACTT
CGTGAATTTAAAAGAGAAGCAGTTTAAAGCCTATAAAGTGTCGATACTT
Found at i:890263 original size:20 final size:20
Alignment explanation
Indices: 890240--890287 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
890230 CGATATAACA
890240 GGTAAAAATATGAT-AAAACC
1 GGTAAAAA-ATGATAAAAACC
*
890260 GGTATCAAAATGATAAAAACC
1 GGTA-AAAAATGATAAAAACC
890281 GGTAAAA
1 GGTAAAA
890288 CGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.54, C:0.10, G:0.17, T:0.19
Consensus pattern (20 bp):
GGTAAAAAATGATAAAAACC
Found at i:892525 original size:21 final size:21
Alignment explanation
Indices: 892499--892563 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
892489 AAGACAATCA
*
892499 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
892520 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
892541 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
892562 AG
1 AG
892564 GCATAAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:892652 original size:33 final size:33
Alignment explanation
Indices: 892597--892662 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
892587 AAATAGATAG
* *
892597 AGTGGTAAAATAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTAAAAGAAGTAGAGGTGTTAAGGGGTGA
* * *
892630 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTAAAAGAAGTAGAGGTGTTAAGGGGTGA
892663 TATTAAGATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.45, T:0.24
Consensus pattern (33 bp):
AGTGGTAAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:894469 original size:19 final size:19
Alignment explanation
Indices: 894445--894493 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
894435 AATGTAGGGT
894445 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
894464 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
894483 TAATTTTGTAT
1 TAATTTTGTAT
894494 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:895607 original size:200 final size:200
Alignment explanation
Indices: 894682--895588 Score: 1550
Period size: 200 Copynumber: 4.5 Consensus size: 200
894672 AGGGTATGTA
* *
894682 CCATAAACATTGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTA
1 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
**
894747 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTAT--TTACTTTTGTAGTTTGTGTCGATATT
66 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
894810 TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
131 TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
894875 CGATC
196 CGATC
* *
894880 CGATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
1 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
894945 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
66 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
*
895010 TTTGGTCCAGAATGAATGGCAAATAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
131 TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
*
895075 CCATC
196 CGATC
* *
895080 CTATAAACATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
1 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
* **
895145 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTGTTTACACTTTTGTAGTTTGTGTCGATATT
66 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
*
895210 TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCTATATATAAAAAGTGT
131 TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
895275 CGATC
196 CGATC
895280 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
1 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
* * * *
895345 TACCAGTTTTATGAGAGAATAAGTCTAAATAATGTGTCGACACTTTTATAGTTTGTGTCGATATT
66 TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
* **
895410 TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACCATAAAGTGTCGATTTATATATAAAAAGTGT
131 TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
895475 CGATC
196 CGATC
* *
895480 CCATAAACATCGAAACCCAAAAGTATAATGTATTAGGTAATTTTTCAATCTAACCGGTATAAGTA
1 CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
* * *
895545 TACCGGTTTTATGGGAGAATTGGTATATAAT-ATGTATCGACACT
66 TACCGGTTTTATGAGAGAATAGGTCTA-AATAATGTATCGACACT
895589 GTTTAATGTT
Statistics
Matches: 674, Mismatches: 32, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
198 98 0.15
200 573 0.85
201 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (200 bp):
CCATAAACATCGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTA
TACCGGTTTTATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATT
TTTGGTCCAGAATGAATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGT
CGATC
Found at i:897095 original size:6 final size:6
Alignment explanation
Indices: 897084--897141 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
897074 CAAGCTGTCA
* * * * *
897084 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGACG ATGATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
*
897132 ATGATG ATGA
1 ATGAAG ATGA
897142 TGATCCAAAC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.21
Consensus pattern (6 bp):
ATGAAG
Found at i:897098 original size:18 final size:18
Alignment explanation
Indices: 897075--897111 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
897065 GTGGACAACC
*
897075 AAGCTGTCAATGAAGATG
1 AAGCTGACAATGAAGATG
*
897093 AAGCTGACGATGAAGATG
1 AAGCTGACAATGAAGATG
897111 A
1 A
897112 CGATGAAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.11, G:0.30, T:0.19
Consensus pattern (18 bp):
AAGCTGACAATGAAGATG
Found at i:897133 original size:3 final size:3
Alignment explanation
Indices: 897101--897145 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
897091 TGAAGCTGAC
* * * *
897101 GAT GAA GAT GAC GAT GAA GAT GAC GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
897146 CCAAACAAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.38, C:0.04, G:0.33, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:897145 original size:12 final size:12
Alignment explanation
Indices: 897084--897141 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
897074 CAAGCTGTCA
*
897084 ATGAAGATGAAG
1 ATGACGATGAAG
*
897096 CTGACGATGAAG
1 ATGACGATGAAG
897108 ATGACGATGAAG
1 ATGACGATGAAG
*
897120 ATGACGATGATG
1 ATGACGATGAAG
*
897132 ATGATGATGA
1 ATGACGATGA
897142 TGATCCAAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 41 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.21
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:898699 original size:183 final size:183
Alignment explanation
Indices: 898354--899105 Score: 1346
Period size: 183 Copynumber: 4.1 Consensus size: 183
898344 AAGTTTTCAT
*
898354 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTTTCA
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
* * * *
898419 AAAAGTGTCG--ATTGAAAAAACATCGGAACCCATAATTATAATGTAATAGATAATTTTTTAATA
66 AAAAGTGTCGACATT---TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
* *
898482 TAATCGGTATAAATATATCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
128 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
898538 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
898603 AAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
66 AAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
*
898668 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAG
131 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
*
898721 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGAAAGAAAAATGTGTCGATACCTTGTCA
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
*
898786 AAAAGTATCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
66 AAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
898851 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
131 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
* *
898904 ACTTTTTAATATTGTGTCGGTAATTTATGTCCAGAATAGAAGAAAAATGTGTCGATACCTTGTCA
1 ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
*
898969 AAAAGTGTAGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
66 AAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
899034 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
131 CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
899087 ACTTTTTAATATTGTGTCG
1 ACTTTTTAATATTGTGTCG
899106 CTAATTTTAA
Statistics
Matches: 550, Mismatches: 16, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
183 473 0.86
184 74 0.13
186 3 0.01
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (183 bp):
ACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGTCA
AAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAA
CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGAC
Found at i:902555 original size:87 final size:87
Alignment explanation
Indices: 902454--902616 Score: 299
Period size: 87 Copynumber: 1.9 Consensus size: 87
902444 AAATAGGTCA
*
902454 ATATAAGCGCTATCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATATTT
902519 CCCGTTAAATACCTATTTTATT
66 CCCGTTAAATACCTATTTTATT
*
902541 ATATAAGCGCTATCTATTACATTATATAAGCATTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTATCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATATTT
*
902606 CCGGTTAAATA
66 CCCGTTAAATA
902617 ATATAACATA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTATCTATTACATTATATAAGCACTACCTAATATGTTATTGTACTTGATAATATTT
CCCGTTAAATACCTATTTTATT
Found at i:903087 original size:50 final size:50
Alignment explanation
Indices: 903023--903121 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
903013 CGTATTTTTG
*
903023 CTGAGTTTGATGCCACGTGTGGAAGGCGCATCCCCGGGGACGCGCCTTCA
1 CTGAGTTTGATGCCACGTGTGGAAAGCGCATCCCCGGGGACGCGCCTTCA
*
903073 CTGA-TTTGACTGCCACGTGTGGAAAGCGCATCCCCGGGGACGCGTCTTC
1 CTGAGTTTGA-TGCCACGTGTGGAAAGCGCATCCCCGGGGACGCGCCTTC
903122 CATTAAATGC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 5 0.11
50 41 0.89
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.21
Consensus pattern (50 bp):
CTGAGTTTGATGCCACGTGTGGAAAGCGCATCCCCGGGGACGCGCCTTCA
Found at i:903359 original size:20 final size:19
Alignment explanation
Indices: 903310--903404 Score: 64
Period size: 20 Copynumber: 5.3 Consensus size: 19
903300 TTTATGTTAG
*
903310 TATTTTTTAAATAGTTATTA
1 TATTTATTAAATA-TTATTA
903330 TA-TT-TT--ATATTATTA
1 TATTTATTAAATATTATTA
*
903345 TATTTATGTAAATATTATTT
1 TATTTAT-TAAATATTATTA
*
903365 TTTTTATTAAA-A-TA--A
1 TATTTATTAAATATTATTA
*
903380 TATTTATATAATTATTATT-
1 TATTTAT-TAAATATTATTA
903399 TATTTA
1 TATTTA
903405 GAATTATTAA
Statistics
Matches: 60, Mismatches: 5, Indels: 21
0.70 0.06 0.24
Matches are distributed among these distances:
15 14 0.23
16 8 0.13
17 4 0.07
18 6 0.10
19 12 0.20
20 16 0.27
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATTTATTAAATATTATTA
Found at i:903363 original size:35 final size:35
Alignment explanation
Indices: 903317--903403 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
903307 TAGTATTTTT
** * *
903317 TAAATAGTTATTATATTTTA-TATTATTATATTTATG
1 TAAATA-TTATT-TATTTTATTAAAATAATATTTATA
*
903353 TAAATATTATTTTTTTTATTAAAATAATATTTATA
1 TAAATATTATTTATTTTATTAAAATAATATTTATA
*
903388 TAATTATTATTTATTT
1 TAAATATTATTTATTT
903404 AGAATTATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 6 0.14
35 31 0.72
36 6 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (35 bp):
TAAATATTATTTATTTTATTAAAATAATATTTATA
Found at i:905155 original size:21 final size:21
Alignment explanation
Indices: 905125--905172 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
905115 GCAGGGGTAC
* *
905125 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
*
905146 ATGCCAAGCCCACCAGTTCAT
1 ATGCCAAGCCCACCACTTCAT
905167 ATGCCA
1 ATGCCA
905173 TCTCTGCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.42, G:0.12, T:0.21
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:905208 original size:21 final size:21
Alignment explanation
Indices: 905182--905248 Score: 100
Period size: 21 Copynumber: 3.2 Consensus size: 21
905172 ATCTCTGCAT
*
905182 GGTTACATTCCGAGCCCGCAG
1 GGTTACATTCCTAGCCCGCAG
905203 GGTTACATTCCTAGCCCGCCA-
1 GGTTACATTCCTAGCCCG-CAG
*
905224 GGTTACATGCCTAGCCCGCAG
1 GGTTACATTCCTAGCCCGCAG
905245 GGTT
1 GGTT
905249 TTATACCATA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.05
21 38 0.90
22 2 0.05
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.22
Consensus pattern (21 bp):
GGTTACATTCCTAGCCCGCAG
Found at i:905819 original size:32 final size:34
Alignment explanation
Indices: 905760--905864 Score: 142
Period size: 34 Copynumber: 3.1 Consensus size: 34
905750 ATAAATGTTT
*
905760 TTAAAATATAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
* *
905794 -TAAAA-AAAAATAATATTATTTGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
* * *
905826 TTAAAATATAAATTATAGTATTCGAAATTTAACA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAAA
905860 TTAAA
1 TTAAA
905865 TTTCAACTTA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
32 24 0.39
33 10 0.16
34 27 0.44
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (34 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAAA
Found at i:906488 original size:128 final size:128
Alignment explanation
Indices: 906260--906866 Score: 1133
Period size: 128 Copynumber: 4.7 Consensus size: 128
906250 ACAATCCATC
906260 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
* *
906325 GGAAGACGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATATGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
* *
906388 TAGTGTCCCCAAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGATAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
906453 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCTTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
906516 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
906581 GGAAGGCGCGCCCCCGGGAATGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
*
906644 TAGTGTCTCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
906709 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
*
906772 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATATTCTCTGACAAAATAAT
1 TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
*
906837 GGAAGGCGCACCCCCGGGAACGCGCCTTCA
66 GGAAGGCGCGCCCCCGGGAACGCGCCTTCA
906867 TATGAATAGT
Statistics
Matches: 465, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 465 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (128 bp):
TAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACAAAATAAT
GGAAGGCGCGCCCCCGGGAACGCGCCTTCAAGTCCCCTGAGAAATAATAGGTACTGATATGAA
Found at i:914932 original size:18 final size:19
Alignment explanation
Indices: 914890--914929 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
914880 TTTGGTTCAT
*
914890 GGAATGTAAGATTACTAGTG
1 GGAATGTAAGATTACCAG-G
914910 GGAATGTAAGATTACCAGG
1 GGAATGTAAGATTACCAGG
914929 G
1 G
914930 AATAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.35, C:0.07, G:0.33, T:0.25
Consensus pattern (19 bp):
GGAATGTAAGATTACCAGG
Found at i:915155 original size:37 final size:39
Alignment explanation
Indices: 915085--915157 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 39
915075 TGGAAAATAT
* * * *
915085 TTATATATTTTCTTTAAAAATTTAAATTCATAAAAAAAA
1 TTATATATTATCTTAAAAAATTGAAAATCATAAAAAAAA
915124 TTATATATTAT-TTAAAAAATTGAAAAT-ATAAAAA
1 TTATATATTATCTTAAAAAATTGAAAATCATAAAAA
915158 GGTTTAATGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 7 0.23
38 13 0.43
39 10 0.33
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (39 bp):
TTATATATTATCTTAAAAAATTGAAAATCATAAAAAAAA
Found at i:925358 original size:20 final size:20
Alignment explanation
Indices: 925322--925359 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
925312 ATCGTATTCC
**
925322 CTGATAATCTTTTATTCCCA
1 CTGATAATCTTACATTCCCA
925342 CTGATAATCTTACATTCC
1 CTGATAATCTTACATTCC
925360 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (20 bp):
CTGATAATCTTACATTCCCA
Found at i:926464 original size:20 final size:21
Alignment explanation
Indices: 926439--926490 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
926429 TTTTCCCAAT
*
926439 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
926459 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
926480 TCGCAATGCGA
1 TCGCAATGCGA
926491 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:926504 original size:20 final size:20
Alignment explanation
Indices: 926479--926572 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
926469 AATTGGGAAA
*
926479 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
926499 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
926520 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
926540 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
926560 TTCGCAACGCGAT
1 ATCGCAACGCGAT
926573 TTACATAGCG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 2 0.03
20 45 0.73
21 13 0.21
22 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:927128 original size:19 final size:19
Alignment explanation
Indices: 927090--927156 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
927080 TTCGAGAATG
927090 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
927110 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
* *
927129 AAAAACGCAACGCGAAACA
1 AAAATCGCAACGCGAAATA
927148 AAAATCGCA
1 AAAATCGCA
927157 TTACGATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 29 0.73
20 11 0.28
ACGTcount: A:0.51, C:0.24, G:0.16, T:0.09
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:927174 original size:19 final size:19
Alignment explanation
Indices: 927160--927336 Score: 149
Period size: 19 Copynumber: 9.7 Consensus size: 19
927150 AATCGCATTA
927160 CGATTTTCATTTCGCGTTG
1 CGATTTTCATTTCGCGTTG
927179 CGATTTTCATTTCGCGTTG
1 CGATTTTCATTTCGCGTTG
*
927198 CGATTTTTATTTCGCGGTTG
1 CGATTTTCATTTCGC-GTTG
*
927218 CGATTTTCATTTCACGTTG
1 CGATTTTCATTTCGCGTTG
* *
927237 CGATTGTC---T-G-GTCG
1 CGATTTTCATTTCGCGTTG
**
927251 CGATAGTCATTTCGCGTTG
1 CGATTTTCATTTCGCGTTG
*
927270 CGA--TTC---TCTCGTTG
1 CGATTTTCATTTCGCGTTG
**
927284 CGATAGTCATTTCCGCGTTG
1 CGATTTTCATTT-CGCGTTG
* * *
927304 CGATTCTAATTATCTCGTTG
1 CGATTTTCATT-TCGCGTTG
927324 CGATTTTCATTTC
1 CGATTTTCATTTC
927337 AACCAAAAGA
Statistics
Matches: 127, Mismatches: 18, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
14 20 0.16
16 3 0.02
17 3 0.02
18 1 0.01
19 53 0.42
20 46 0.36
21 1 0.01
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.44
Consensus pattern (19 bp):
CGATTTTCATTTCGCGTTG
Found at i:927228 original size:39 final size:38
Alignment explanation
Indices: 927160--927241 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 38
927150 AATCGCATTA
*
927160 CGATTTTCATTTCGCGTTGCGATTTTCATTTCGCGTTG
1 CGATTTTCATTTCGCGTTGCGATTTTCATTTCACGTTG
*
927198 CGATTTTTATTTCGCGGTTGCGATTTTCATTTCACGTTG
1 CGATTTTCATTTCGC-GTTGCGATTTTCATTTCACGTTG
927237 CGATT
1 CGATT
927242 GTCTGGTCGC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 14 0.34
39 27 0.66
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.48
Consensus pattern (38 bp):
CGATTTTCATTTCGCGTTGCGATTTTCATTTCACGTTG
Found at i:927252 original size:39 final size:39
Alignment explanation
Indices: 927171--927252 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
927161 GATTTTCATT
* * **
927171 TCGC-GTTGCGATTTTCATTTCGCGTTGCGATTTTTATT
1 TCGCGGTTGCGATTTTCATTTCACGTTGCGATTTCTAGG
927209 TCGCGGTTGCGATTTTCATTTCACGTTGCGATTGTCT-GG
1 TCGCGGTTGCGATTTTCATTTCACGTTGCGATT-TCTAGG
927248 TCGCG
1 TCGCG
927253 ATAGTCATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
38 4 0.11
39 32 0.84
40 2 0.05
ACGTcount: A:0.10, C:0.21, G:0.26, T:0.44
Consensus pattern (39 bp):
TCGCGGTTGCGATTTTCATTTCACGTTGCGATTTCTAGG
Found at i:927261 original size:33 final size:33
Alignment explanation
Indices: 927224--927310 Score: 129
Period size: 33 Copynumber: 2.6 Consensus size: 33
927214 GTTGCGATTT
* * *
927224 TCATTTCACGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
927257 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
927290 TCATTTCCGCGTTGCGATTCT
1 TCATTT-CGCGTTGCGATTCT
927311 AATTATCTCG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 35 0.71
34 14 0.29
ACGTcount: A:0.13, C:0.24, G:0.24, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:929420 original size:21 final size:21
Alignment explanation
Indices: 929396--929462 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
929386 TCATTCCTCG
929396 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
929417 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
929438 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
929459 AGAG
1 AGAG
929463 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:929420 original size:42 final size:42
Alignment explanation
Indices: 929344--929462 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
929334 GACTCGCCTG
* * * * * * *
929344 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
929386 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
929428 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
929463 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:930450 original size:14 final size:14
Alignment explanation
Indices: 930431--930464 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
930421 TGTTTAATTA
930431 ATTTGTAAAAGGTG
1 ATTTGTAAAAGGTG
*
930445 ATTTGTAAAAGTTG
1 ATTTGTAAAAGGTG
930459 ATTTGT
1 ATTTGT
930465 TTAATTGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (14 bp):
ATTTGTAAAAGGTG
Found at i:930628 original size:20 final size:19
Alignment explanation
Indices: 930571--930638 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 19
930561 AAAAAGTACT
930571 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
930590 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
930604 ATCGCAATGCGAAAATGAAA
1 ATCGCAATGCG-AAATGAAA
*
930624 ATCGCAACGCGAAAT
1 ATCGCAATGCGAAAT
930639 TAAATTCGCG
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
19 12 0.30
20 13 0.32
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:930683 original size:33 final size:33
Alignment explanation
Indices: 930640--930739 Score: 157
Period size: 33 Copynumber: 3.0 Consensus size: 33
930630 ACGCGAAATT
930640 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
*
930673 AAATTAGCGTTGCGATTTTCATTTCGCATTGCG
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
* *
930706 -ATTCTCTCGTTGCGATTTTCATTTCGCATTGCG
1 AAAT-TCGCGTTGCGATTTTCATTTCGCATTGCG
930739 A
1 A
930740 TAGTAATTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
32 2 0.03
33 59 0.97
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (33 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
Found at i:930706 original size:19 final size:19
Alignment explanation
Indices: 930643--930740 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
930633 CGAAATTAAA
*
930643 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
*
930662 TTCGCATTGCGA-----AA
1 TTCGCATTGCGATTTTCAT
* *
930676 TTAGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
930695 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
930711 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
930728 TTCGCATTGCGAT
1 TTCGCATTGCGAT
930741 AGTAATTTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 20
0.67 0.10 0.22
Matches are distributed among these distances:
14 17 0.28
16 7 0.12
17 7 0.12
19 29 0.48
ACGTcount: A:0.15, C:0.21, G:0.20, T:0.43
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:933049 original size:12 final size:12
Alignment explanation
Indices: 933032--933056 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
933022 TCTTCGGGGA
933032 CTTTTTCTTCTT
1 CTTTTTCTTCTT
933044 CTTTTTCTTCTT
1 CTTTTTCTTCTT
933056 C
1 C
933057 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:933265 original size:24 final size:24
Alignment explanation
Indices: 933231--933284 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
933221 CTGAAACATC
*
933231 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAT
*
933255 ATCAAAGTCCGGGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAT
933279 ATCAAA
1 ATCAAA
933285 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAT
Found at i:933298 original size:24 final size:24
Alignment explanation
Indices: 933247--933298 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
933237 ATCCGTGTAT
** *
933247 TGACCAATATCAAAGTCCGGGTAT
1 TGACCAATATCAAAGTCCGAATAC
* *
933271 TGACCAATATCAAATTTCGAATAC
1 TGACCAATATCAAAGTCCGAATAC
933295 TGAC
1 TGAC
933299 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (24 bp):
TGACCAATATCAAAGTCCGAATAC
Found at i:934366 original size:20 final size:20
Alignment explanation
Indices: 934341--934378 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
934331 ATTCATTTGA
934341 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
934361 CTATCGCAACGCGAAAAT
1 CTATCGCAACGCGAAAAT
934379 CGCAATGCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:934441 original size:19 final size:19
Alignment explanation
Indices: 934398--934484 Score: 128
Period size: 19 Copynumber: 4.8 Consensus size: 19
934388 AAATGAAAAA
934398 CGCATTGCGATTTT--TTT
1 CGCATTGCGATTTTCATTT
934415 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
934432 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
934451 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
* *
934470 TGCATTGCAATTTTC
1 CGCATTGCGATTTTC
934485 TCGTTGCGAT
Statistics
Matches: 64, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
15 10 0.16
17 7 0.11
19 47 0.73
ACGTcount: A:0.15, C:0.20, G:0.16, T:0.49
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:934468 original size:38 final size:35
Alignment explanation
Indices: 934398--934513 Score: 130
Period size: 38 Copynumber: 3.3 Consensus size: 35
934388 AAATGAAAAA
934398 CGCATTGCGATTTT-TTTCGTTGCGATTTTCATTT
1 CGCATTGCGATTTTCTTTCGTTGCGATTTTCATTT
934432 CGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTC-TTTCG--TTGCGATTTTCATTT
* * ***
934470 TGCATTGCAATTTTC--TCGTTGCGATAGCCATTT
1 CGCATTGCGATTTTCTTTCGTTGCGATTTTCATTT
*
934503 CGCGTTGCGAT
1 CGCATTGCGAT
934514 AGTCTGTTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
33 20 0.29
34 14 0.20
35 3 0.04
36 5 0.07
38 28 0.40
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.46
Consensus pattern (35 bp):
CGCATTGCGATTTTCTTTCGTTGCGATTTTCATTT
Found at i:934620 original size:14 final size:14
Alignment explanation
Indices: 934601--934637 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
934591 CATCAATTAA
934601 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
934615 ACAAATCATCTTTT
1 ACAAATCAACATTT
934629 ACAAATCAA
1 ACAAATCAA
934638 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:936528 original size:20 final size:20
Alignment explanation
Indices: 936505--936577 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 20
936495 GAAACTTAAA
936505 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* * * *
936525 ATCGTAACGTGGAAATGGCT
1 ATCGCAACGCGAAAATGACT
* * **
936545 ATCACAATGCG-AAATGAAA
1 ATCGCAACGCGAAAATGACT
936564 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
936578 CACAAATCGC
Statistics
Matches: 39, Mismatches: 13, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.41, C:0.21, G:0.22, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:936575 original size:19 final size:19
Alignment explanation
Indices: 936486--936577 Score: 58
Period size: 20 Copynumber: 4.7 Consensus size: 19
936476 TAGTTTACTT
* *
936486 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
936506 TCGCAACGCGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
* * ***
936526 TCGTAACGTGGAAATGGCTA
1 TCGCAACG-CGAAATGAAAA
* *
936546 TCACAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
936565 TCGCAACGCGAAA
1 TCGCAACGCGAAA
936578 CACAAATCGC
Statistics
Matches: 54, Mismatches: 16, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
19 18 0.33
20 32 0.59
21 4 0.07
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:936626 original size:14 final size:14
Alignment explanation
Indices: 936607--936663 Score: 69
Period size: 14 Copynumber: 3.8 Consensus size: 14
936597 TTCATTTCGT
936607 GTTGCGATTTTGTC
1 GTTGCGATTTTGTC
*
936621 GTTGCGATTTCATTTC
1 GTTGCGATTT--TGTC
936637 GCATTGCGATTTTGTC
1 G--TTGCGATTTTGTC
936653 GTTGCGATTTT
1 GTTGCGATTTT
936664 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.11, C:0.16, G:0.25, T:0.49
Consensus pattern (14 bp):
GTTGCGATTTTGTC
Found at i:936670 original size:33 final size:33
Alignment explanation
Indices: 936589--936679 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
936579 ACAAATCGCA
**
936589 TTGCGATTTTCATTTCGTGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
936622 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
936654 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
936680 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:936698 original size:20 final size:19
Alignment explanation
Indices: 936664--936718 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
936654 TTGCGATTTT
*
936664 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
936683 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
936703 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
936719 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:937226 original size:18 final size:18
Alignment explanation
Indices: 937200--937244 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
937190 GTCGATCAGA
*
937200 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
937218 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
937236 TGATGGCTC
1 TGATGGCTC
937245 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:938589 original size:20 final size:20
Alignment explanation
Indices: 938564--938601 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
938554 AATAGTTTCT
938564 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
938584 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
938602 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:938892 original size:22 final size:21
Alignment explanation
Indices: 938858--938906 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
938848 TCTGAGAGAT
938858 GGAGAT-AGACGGATTTCGCC
1 GGAGATGAGACGGATTTCGCC
*
938878 GGAGATGAGGACGGATTTCGTC
1 GGAGATGA-GACGGATTTCGCC
938900 GGAGATG
1 GGAGATG
938907 GGTGAGAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 6 0.23
21 1 0.04
22 19 0.73
ACGTcount: A:0.24, C:0.14, G:0.41, T:0.20
Consensus pattern (21 bp):
GGAGATGAGACGGATTTCGCC
Found at i:939122 original size:20 final size:20
Alignment explanation
Indices: 939096--939165 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
939086 GATTATGTAT
939096 TATCGCGTTGCGAAAGTCAGA
1 TATCGCGTTGCGAAAGTCA-A
939117 -ATCGCGTTGCGAAAGTCAA
1 TATCGCGTTGCGAAAGTCAA
939136 TATCGCGTTGCGAAAGT-AA
1 TATCGCGTTGCGAAAGTCAA
*
939155 GTATCTCGTTG
1 -TATCGCGTTG
939166 TGATTTTGTA
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
19 3 0.07
20 43 0.93
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAA
Found at i:939202 original size:20 final size:20
Alignment explanation
Indices: 939096--939210 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
939086 GATTATGTAT
*
939096 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
939116 AATCGCGTTGCGAAAGTCAA
1 TATCGCGTTGCGATAGTCAG
* *
939136 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGATAGTCAG
* * * *
939156 TATCTCGTTGTGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
*
939177 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
939197 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
939211 TTTCCTAATT
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
19 3 0.04
20 61 0.79
21 11 0.14
22 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:939213 original size:41 final size:41
Alignment explanation
Indices: 939076--939211 Score: 150
Period size: 41 Copynumber: 3.3 Consensus size: 41
939066 CGCTTTGAAA
*
939076 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
* * * *
939117 ATCGCGTTGCGA--AAGTCAATATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATTATGT-ATTATCGCGTTGCGAAAGTCAGT
* * * * * *
939157 ATCTCGTTGTGATTTTGTATTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
939198 ATCGCATTGCGATT
1 ATCGCATTGCGATT
939212 TTCCTAATTC
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.04
40 30 0.39
41 41 0.54
42 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (41 bp):
ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGT
Found at i:939229 original size:41 final size:41
Alignment explanation
Indices: 939076--939272 Score: 143
Period size: 41 Copynumber: 4.8 Consensus size: 41
939066 CGCTTTGAAA
* * * * *
939076 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATTTTCTAATATCGCGTTGCGATAGTCAGT
* *** * *
939117 ATCGCGTTGCGAAAGTC-AATATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATTTTCTAATATCGCGTTGCGATAGTCAGT
* * * * * *
939157 ATCTCGTTGTGATTTTGTATTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTTTCTAATATCGCGTTGCGATAGTCAGT
* *
939198 ATCGCATTGCGATTTTCCTAAT-TCGCGTTGCGAT-TTGC-TT
1 ATCGCATTGCGATTTT-CTAATATCGCGTTGCGATAGT-CAGT
*
939238 ATTCGCATTGCGATTTTCCGAAT-TCGCGTTGCGAT
1 A-TCGCATTGCGATTTT-CTAATATCGCGTTGCGAT
939273 TTACTTATTC
Statistics
Matches: 125, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
40 34 0.27
41 88 0.70
42 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (41 bp):
ATCGCATTGCGATTTTCTAATATCGCGTTGCGATAGTCAGT
Found at i:939243 original size:20 final size:21
Alignment explanation
Indices: 939199--939274 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
939189 ATAGTCAGTA
939199 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCTAAT
* * *
939220 TCGCGTTGCGA-TTTGCTTAT
1 TCGCATTGCGATTTTCCTAAT
*
939240 TCGCATTGCGATTTTCCGAAT
1 TCGCATTGCGATTTTCCTAAT
*
939261 TCGCGTTGCGATTT
1 TCGCATTGCGATTT
939275 ACTTATTCGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.37
21 29 0.63
ACGTcount: A:0.14, C:0.22, G:0.21, T:0.42
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCTAAT
Found at i:939273 original size:41 final size:41
Alignment explanation
Indices: 939199--939283 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
939189 ATAGTCAGTA
* *
939199 TCGCATTGCGATTTTCCTAATTCGCGTTGCGATTTGCTTAT
1 TCGCATTGCGATTTTCCGAATTCGCGTTGCGATTTACTTAT
939240 TCGCATTGCGATTTTCCGAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCGAATTCGCGTTGCGATTTACTTAT
939281 TCG
1 TCG
939284 TAATCGCAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.42
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCGAATTCGCGTTGCGATTTACTTAT
Found at i:939715 original size:27 final size:29
Alignment explanation
Indices: 939675--939730 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 29
939665 TATATTTTAA
*
939675 GTTAAATTTTGATATTTAA-TTTTTTTTG
1 GTTAAATTTAGATATTTAACTTTTTTTTG
939703 GTTAAA-TTAGATATTTAACGTTTTTTTT
1 GTTAAATTTAGATATTTAAC-TTTTTTTT
939731 ACACTTTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 11 0.44
28 6 0.24
29 8 0.32
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.61
Consensus pattern (29 bp):
GTTAAATTTAGATATTTAACTTTTTTTTG
Found at i:939749 original size:29 final size:28
Alignment explanation
Indices: 939709--939767 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
939699 TTTGGTTAAA
* *
939709 TTAGATATTTAACGTTTTTT-TTACACTT
1 TTAGATAATTAACATTTTTTATTACA-TT
*
939737 TTAGATAAATTAATATTTTTTATTACATT
1 TTAGAT-AATTAACATTTTTTATTACATT
939766 TT
1 TT
939768 CAAGTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 6 0.23
29 15 0.58
30 5 0.19
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.58
Consensus pattern (28 bp):
TTAGATAATTAACATTTTTTATTACATT
Found at i:955486 original size:6 final size:6
Alignment explanation
Indices: 955475--955544 Score: 70
Period size: 6 Copynumber: 11.5 Consensus size: 6
955465 GACACGTATT
* * * *
955475 ACCACG ACCACG ACCACG ACCACG ACCACCA ACCTC- ACCTCG ACCTCG
1 ACCACG ACCACG ACCACG ACCACG ACCA-CG ACCACG ACCACG ACCACG
*
955523 ACCACG ACCGACC ACCACG ACC
1 ACCACG ACC-ACG ACCACG ACC
955545 CGCCGAGCCG
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
5 5 0.09
6 42 0.75
7 9 0.16
ACGTcount: A:0.30, C:0.53, G:0.13, T:0.04
Consensus pattern (6 bp):
ACCACG
Found at i:958499 original size:32 final size:32
Alignment explanation
Indices: 958463--958525 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
958453 ACTCCAGCTT
958463 CTTGGTTCTAGTCTTCTAGACCTGCGATTTTA
1 CTTGGTTCTAGTCTTCTAGACCTGCGATTTTA
958495 CTTGGTTCTAGTCTTCTAGACCTGCGATTTT
1 CTTGGTTCTAGTCTTCTAGACCTGCGATTTT
958526 TACCGATTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.44
Consensus pattern (32 bp):
CTTGGTTCTAGTCTTCTAGACCTGCGATTTTA
Found at i:982012 original size:16 final size:16
Alignment explanation
Indices: 981982--982020 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
981972 TTTTACTTCA
*
981982 AAATGA-TTAAGTGCT
1 AAATGATTTAAATGCT
981997 AAATGATTTAAATGCT
1 AAATGATTTAAATGCT
*
982013 GAATGATT
1 AAATGATT
982021 CAGAGGCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (16 bp):
AAATGATTTAAATGCT
Done.