Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008354.1 Hibiscus syriacus cultivar Beakdansim tig00111091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54563

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2710--2770
20
2.9
20
80
7
59
16
26
32
24
1.96
10373--10408
18
2.0
18
94
0
63
22
27
30
19
1.98
13717--13744
7
4.0
7
100
0
56
28
28
14
28
1.95
15266--15297
15
2.1
15
100
0
64
46
0
0
53
1.00
19378--19419
6
7.2
6
83
2
50
47
2
4
45
1.36
19419--19463
22
2.0
22
82
0
54
48
2
2
46
1.26
26496--26535
18
2.3
18
83
8
57
25
5
2
67
1.23
26776--26825
16
3.2
16
83
10
52
42
2
0
56
1.11
26790--26823
16
2.1
17
94
5
61
41
0
0
58
0.98
26790--26829
8
5.2
8
80
19
50
40
0
0
60
0.97
27008--27038
2
15.5
2
100
0
62
48
0
0
51
1.00
31514--31569
18
3.2
16
77
18
58
78
7
12
1
1.02
32604--32639
18
2.0
18
88
0
54
19
8
30
41
1.81
33129--33195
34
1.9
35
93
3
118
28
25
13
32
1.93
33372--33443
37
1.9
37
83
5
92
27
20
12
38
1.89
33960--34928
106
9.0
106
88
3
1363
34
24
18
22
1.96
33960--34935
431
2.3
428
87
5
1409
34
24
18
22
1.96
36145--36184
18
2.3
18
83
8
57
25
5
2
67
1.23
36716--36756
2
20.5
2
100
0
82
48
0
0
51
1.00
36796--36847
21
2.4
21
80
3
59
19
5
0
75
1.01
36807--36846
4
9.5
4
91
8
62
22
2
0
75
0.93
37805--37833
10
2.9
10
100
0
58
17
0
0
82
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49330--49373
19
2.4
19
80
3
54
54
22
0
22
1.45
52414--52468
2
29.0
2
87
10
80
52
0
0
47
1.00
52414--52468
17
3.4
17
90
5
87
52
0
0
47
1.00
52423--52468
19
2.4
19
92
0
74
52
0
0
47
1.00
52414--52467
15
3.6
15
87
7
83
53
0
0
46
1.00

Tables:   1

The End!