Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 32 of 56
Found at i:6883866 original size:2 final size:2
Alignment explanation
Indices: 6883859--6883964 Score: 212
Period size: 2 Copynumber: 53.0 Consensus size: 2
6883849 TCGTAAAACA
6883859 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6883901 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6883943 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
6883965 GAAATCATAG
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 104 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6884626 original size:60 final size:60
Alignment explanation
Indices: 6884525--6884759 Score: 312
Period size: 60 Copynumber: 3.9 Consensus size: 60
6884515 TCAGAACAAA
* * * *
6884525 CATCCATAAGGACTTACCATAGACCCCT-AGAACCTAGGAGTCCACTATGGAAGATACATG
1 CATCCATAAGGACTTACCCTAGACCACTAAG-ATCTAGGAGTCCACTATAGAAGATACATG
*
6884585 CATCCATAAGGACTTACCCTAGACCACTAAGATCTATGAGTCCACTATAGAAGATACATG
1 CATCCATAAGGACTTACCCTAGACCACTAAGATCTAGGAGTCCACTATAGAAGATACATG
* * * *
6884645 CATCCGTAAGGACTTACCCTAGACCAGTAAGATATAGGAGTCAACTAT-GTAAGATACATG
1 CATCCATAAGGACTTACCCTAGACCACTAAGATCTAGGAGTCCACTATAG-AAGATACATG
* * * * *
6884705 CATCCATAAGGAGTTACCCTATACTACTAAGATCTAGGAGTTCATTATAGAAGAT
1 CATCCATAAGGACTTACCCTAGACCACTAAGATCTAGGAGTCCACTATAGAAGAT
6884760 CAAAACAGTC
Statistics
Matches: 153, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
59 1 0.01
60 149 0.97
61 3 0.02
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (60 bp):
CATCCATAAGGACTTACCCTAGACCACTAAGATCTAGGAGTCCACTATAGAAGATACATG
Found at i:6886080 original size:3 final size:3
Alignment explanation
Indices: 6886066--6886095 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
6886056 ATAAATCAAT
*
6886066 TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6886096 ATTATTTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:6894306 original size:21 final size:20
Alignment explanation
Indices: 6894280--6894323 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
6894270 CATAATTAGT
6894280 AATAAAA-AAAATATCCTCATA
1 AATAAAAGAAAA-A-CCTCATA
6894301 AATAAAAGGAAAAACCTCATA
1 AATAAAA-GAAAAACCTCATA
6894322 AA
1 AA
6894324 ACACTTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 16 0.76
22 1 0.05
23 4 0.19
ACGTcount: A:0.64, C:0.14, G:0.05, T:0.18
Consensus pattern (20 bp):
AATAAAAGAAAAACCTCATA
Found at i:6894685 original size:15 final size:15
Alignment explanation
Indices: 6894643--6894687 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
6894633 GTTTTATTTC
*
6894643 TTTTGTTTTTTTCAAT
1 TTTTGTTTTTTT-ATT
*
6894659 TTTT-TATTTTTATT
1 TTTTGTTTTTTTATT
6894673 TTTTGTTTTTTTATT
1 TTTTGTTTTTTTATT
6894688 AACACGGGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 6 0.24
15 15 0.60
16 4 0.16
ACGTcount: A:0.11, C:0.02, G:0.04, T:0.82
Consensus pattern (15 bp):
TTTTGTTTTTTTATT
Found at i:6906319 original size:33 final size:33
Alignment explanation
Indices: 6906282--6906371 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 33
6906272 AAGGTTTATA
*
6906282 TCTTCACCAAAGGGTCCCTTCAAAACT-TATGTC
1 TCTTCACCAAAGGGTCCCTCCAAAACTCT-TGTC
* * *
6906315 TCTTC-GCAAAGGTTTCCTCCAAAACTCTTGTC
1 TCTTCACCAAAGGGTCCCTCCAAAACTCTTGTC
* * * *
6906347 TTTTAACCAAAGTGTGCCTCCAAAA
1 TCTTCACCAAAGGGTCCCTCCAAAA
6906372 GTCATGTTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
32 24 0.53
33 21 0.47
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (33 bp):
TCTTCACCAAAGGGTCCCTCCAAAACTCTTGTC
Found at i:6907125 original size:22 final size:22
Alignment explanation
Indices: 6907100--6907152 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
6907090 TTGGATGAAA
6907100 GCATGAAATAGGAAATTAAGCT
1 GCATGAAATAGGAAATTAAGCT
* *
6907122 GCATGAAATAGGAAGTTAATCT
1 GCATGAAATAGGAAATTAAGCT
6907144 GCATGAAAT
1 GCATGAAAT
6907153 TCTCTATCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.43, C:0.09, G:0.23, T:0.25
Consensus pattern (22 bp):
GCATGAAATAGGAAATTAAGCT
Found at i:6910333 original size:2 final size:2
Alignment explanation
Indices: 6910326--6910375 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
6910316 TCTTTAAATA
6910326 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6910368 AT AT AT AT
1 AT AT AT AT
6910376 GAGAGAGAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6911978 original size:54 final size:50
Alignment explanation
Indices: 6911794--6912037 Score: 127
Period size: 50 Copynumber: 4.6 Consensus size: 50
6911784 AATTTGTTTC
* ** * **
6911794 TATACTCGACAAAATGTCCGTTATTTTATCAACACAAAACAA-TATATCCA
1 TATACTCGAAAAAATGTTTGTTATTTTATC-ACACAAAAAAATTATATTTA
** * * *
6911844 TATACTCGAAACTCGATAAAGTGTTCATTATTTTATCAACGACAAAAAGAGTCT-TTT-
1 TATACTCG-AA----A-AAA-TGTTTGTTATTTTATC-AC-ACAAAAAAATTATATTTA
* * ** *
6911901 TATACTAGATAAAATGTCCGTTATTTTATCTACACAAAAGAA-TATATTTA
1 TATACTCGAAAAAATGTTTGTTATTTTATC-ACACAAAAAAATTATATTTA
* * * *
6911951 TATAGTCGACATAAAAAATGTTTGTTATTTTAGTACAGACAAAAAAATTCTTTTTA
1 TATACTCG----AAAAAATGTTTGTTATTTTA-T-CACACAAAAAAATTATATTTA
6912007 TATACTCGAAAAAATGTTTGTTATTTTATCA
1 TATACTCGAAAAAATGTTTGTTATTTTATCA
6912038 AGGACAACAT
Statistics
Matches: 150, Mismatches: 26, Indels: 36
0.71 0.12 0.17
Matches are distributed among these distances:
48 2 0.01
49 10 0.07
50 32 0.21
51 5 0.03
52 21 0.14
54 17 0.11
55 11 0.07
56 18 0.12
57 24 0.16
58 8 0.05
59 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (50 bp):
TATACTCGAAAAAATGTTTGTTATTTTATCACACAAAAAAATTATATTTA
Found at i:6912044 original size:52 final size:51
Alignment explanation
Indices: 6911658--6912044 Score: 207
Period size: 52 Copynumber: 7.4 Consensus size: 51
6911648 CGTTATTTTT
* * * *
6911658 GTTATTTTATCAACGACAACAACAA-TCT-TATTATATTCTCCATAAAATTTTC
1 GTTATTTTATCAA-GACAA-AAAAATTCTAT-TTATATACTCGATAAAATGTTC
* * * * *
6911710 GATATTTTATCAACGA-AATAAAATTCTATTTCTATACTCGACAAAATATTC
1 GTTATTTTATCAA-GACAAAAAAATTCTATTTATATACTCGATAAAATGTTC
* * * * * * *
6911761 ATTATTATT-TCAATGATGAAAATAATT-TGTTTCTATACTCGACAAAATGTCC
1 GTTATT-TTATCAA-GA-CAAAAAAATTCTATTTATATACTCGATAAAATGTTC
* * * * *
6911813 GTTATTTTATCAACACAAAACAATATATCCATATACTCGAAACTCGATAAAGTGTTC
1 GTTATTTTATCAAGACAAAA-AA-AT-TCTATTTA-T--ATACTCGATAAAATGTTC
* * * * *
6911870 ATTATTTTATCAACGACAAAAAGAGTCT-TTT-TATACTAGATAAAATGTCC
1 GTTATTTTATCAA-GACAAAAAAATTCTATTTATATACTCGATAAAATGTTC
* * * * * *
6911920 GTTATTTTATCTACACAAAAGAA-TATATTTATATAGTCGACATAAAAAATGTTT
1 GTTATTTTATCAAGACAAAAAAATTCTATTTATATACTCG--AT--AAAATGTTC
* * *
6911974 GTTATTTTAGT-ACAGACAAAAAAATTCTTTTTATATACTCGAAAAAATGTTT
1 GTTATTTTA-TCA-AGACAAAAAAATTCTATTTATATACTCGATAAAATGTTC
6912026 GTTATTTTATCAAGGACAA
1 GTTATTTTATCAA-GACAA
6912045 CATAATTTGT
Statistics
Matches: 255, Mismatches: 55, Indels: 50
0.71 0.15 0.14
Matches are distributed among these distances:
48 2 0.01
49 10 0.04
50 38 0.15
51 38 0.15
52 78 0.31
53 8 0.03
54 21 0.08
55 13 0.05
56 14 0.05
57 27 0.11
58 6 0.02
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.38
Consensus pattern (51 bp):
GTTATTTTATCAAGACAAAAAAATTCTATTTATATACTCGATAAAATGTTC
Found at i:6912289 original size:49 final size:49
Alignment explanation
Indices: 6912229--6912341 Score: 208
Period size: 49 Copynumber: 2.3 Consensus size: 49
6912219 CATTAATGAA
* *
6912229 CATATGTAGTTTCATCGGTGATTTCATATATTAATGTATAATTTCGTAC
1 CATATGGAGTTTCATCAGTGATTTCATATATTAATGTATAATTTCGTAC
6912278 CATATGGAGTTTCATCAGTGATTTCATATATTAATGTATAATTTCGTAC
1 CATATGGAGTTTCATCAGTGATTTCATATATTAATGTATAATTTCGTAC
6912327 CATATGGAGTTTCAT
1 CATATGGAGTTTCAT
6912342 TTGGAATATT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (49 bp):
CATATGGAGTTTCATCAGTGATTTCATATATTAATGTATAATTTCGTAC
Found at i:6915128 original size:35 final size:35
Alignment explanation
Indices: 6915088--6915170 Score: 166
Period size: 35 Copynumber: 2.4 Consensus size: 35
6915078 TTCTTTAGAT
6915088 TTGTTTTCTCCTTTTTTATCGAGAGAGAATTATCA
1 TTGTTTTCTCCTTTTTTATCGAGAGAGAATTATCA
6915123 TTGTTTTCTCCTTTTTTATCGAGAGAGAATTATCA
1 TTGTTTTCTCCTTTTTTATCGAGAGAGAATTATCA
6915158 TTGTTTTCTCCTT
1 TTGTTTTCTCCTT
6915171 GGTAGATCGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (35 bp):
TTGTTTTCTCCTTTTTTATCGAGAGAGAATTATCA
Found at i:6916121 original size:2 final size:2
Alignment explanation
Indices: 6916114--6916148 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6916104 TAAAACAAAG
6916114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6916149 TACACCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6918973 original size:41 final size:41
Alignment explanation
Indices: 6918926--6919055 Score: 145
Period size: 41 Copynumber: 3.2 Consensus size: 41
6918916 TATTGCAGCT
* * * * *
6918926 TTTGTTTAAAAATGCAATTAAAGAACGATTTTGTTGTGGCG
1 TTTGTTTAAAAATGCCACTAAAGAACGATTCTGTTGCGGCA
* * * * *
6918967 TTTGTTTAGAAACGCCACTAAAGTTA-GATTCTGTGGCGGCC
1 TTTGTTTAAAAATGCCACTAAAG-AACGATTCTGTTGCGGCA
*
6919008 TTTGTTTAAACATGCCACTAAAGAACGATTCTGTTGCGGCA
1 TTTGTTTAAAAATGCCACTAAAGAACGATTCTGTTGCGGCA
6919049 TTTGTTT
1 TTTGTTT
6919056 GGAAACACCA
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
40 1 0.01
41 70 0.97
42 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (41 bp):
TTTGTTTAAAAATGCCACTAAAGAACGATTCTGTTGCGGCA
Found at i:6919067 original size:41 final size:40
Alignment explanation
Indices: 6918944--6919071 Score: 134
Period size: 41 Copynumber: 3.1 Consensus size: 40
6918934 AAAATGCAAT
* * * *
6918944 TAAAGAACGATTTTGTTGTGGCGTTTGTTTAGAAACGCCAC
1 TAAAGAACGATTCTGTTGCGGCATTTGTTT-GAAACACCAC
* * *
6918985 TAAAGTTA-GATTCTGTGGCGGCCTTTGTTT-AAACATGCCAC
1 TAAAG-AACGATTCTGTTGCGGCATTTGTTTGAAACA--CCAC
6919026 TAAAGAACGATTCTGTTGCGGCATTTGTTTGGAAACACCAC
1 TAAAGAACGATTCTGTTGCGGCATTTGTTT-GAAACACCAC
6919067 TAAAG
1 TAAAG
6919072 TTAGATTATG
Statistics
Matches: 72, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
39 4 0.06
40 1 0.01
41 61 0.85
42 1 0.01
43 5 0.07
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (40 bp):
TAAAGAACGATTCTGTTGCGGCATTTGTTTGAAACACCAC
Found at i:6919094 original size:41 final size:40
Alignment explanation
Indices: 6918963--6919095 Score: 135
Period size: 41 Copynumber: 3.2 Consensus size: 40
6918953 ATTTTGTTGT
*
6918963 GGCGTTTGTTTAGAAACGCCACTAAAGTTAGATTCTGTGGC
1 GGCGTTTGTTT-GAAACACCACTAAAGTTAGATTCTGTGGC
* * *
6919004 GGCCTTTGTTT-AAACATGCCACTAAAG-AACGATTCTGTTGC
1 GGCGTTTGTTTGAAACA--CCACTAAAGTTA-GATTCTGTGGC
* *
6919045 GGCATTTGTTTGGAAACACCACTAAAGTTAGATTATGTGGC
1 GGCGTTTGTTT-GAAACACCACTAAAGTTAGATTCTGTGGC
* *
6919086 TGTGTTTGTT
1 GGCGTTTGTT
6919096 CAAAATCTAC
Statistics
Matches: 75, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
39 4 0.05
40 1 0.01
41 64 0.85
42 1 0.01
43 5 0.07
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (40 bp):
GGCGTTTGTTTGAAACACCACTAAAGTTAGATTCTGTGGC
Found at i:6919095 original size:82 final size:82
Alignment explanation
Indices: 6918926--6919085 Score: 239
Period size: 82 Copynumber: 2.0 Consensus size: 82
6918916 TATTGCAGCT
* * * * *
6918926 TTTGTTTAAAAATGCAATTAAAGAACGATTTTGTTGTGGCGTTTGTTTAGAAACGCCACTAAAGT
1 TTTGTTTAAAAATGCAACTAAAGAACGATTCTGTTGCGGCATTTGTTTAGAAACACCACTAAAGT
*
6918991 TAGATTCTGTGGCGGCC
66 TAGATTATGTGGCGGCC
* * *
6919008 TTTGTTTAAACATGCCACTAAAGAACGATTCTGTTGCGGCATTTGTTTGGAAACACCACTAAAGT
1 TTTGTTTAAAAATGCAACTAAAGAACGATTCTGTTGCGGCATTTGTTTAGAAACACCACTAAAGT
6919073 TAGATTATGTGGC
66 TAGATTATGTGGC
6919086 TGTGTTTGTT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
82 69 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (82 bp):
TTTGTTTAAAAATGCAACTAAAGAACGATTCTGTTGCGGCATTTGTTTAGAAACACCACTAAAGT
TAGATTATGTGGCGGCC
Found at i:6920717 original size:18 final size:18
Alignment explanation
Indices: 6920694--6920734 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6920684 TCATTTGCAA
6920694 CACAT-CAAATTCACATAT
1 CACATCCAAATTC-CATAT
*
6920712 CACATCCACATTCCATAT
1 CACATCCAAATTCCATAT
6920730 CACAT
1 CACAT
6920735 TTCATATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.39, C:0.34, G:0.00, T:0.27
Consensus pattern (18 bp):
CACATCCAAATTCCATAT
Found at i:6925312 original size:18 final size:18
Alignment explanation
Indices: 6925289--6925329 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
6925279 TTATTTGCAA
6925289 CACAT-CACATTCACATAT
1 CACATCCACATTC-CATAT
*
6925307 CACATCCATATTCCATAT
1 CACATCCACATTCCATAT
6925325 CACAT
1 CACAT
6925330 TTCATATCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.37, C:0.34, G:0.00, T:0.29
Consensus pattern (18 bp):
CACATCCACATTCCATAT
Found at i:6927609 original size:18 final size:18
Alignment explanation
Indices: 6927586--6927626 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
6927576 TTATTTGCAA
6927586 CACAT-CACATTCACATAT
1 CACATCCACATTC-CATAT
6927604 CACATCCACATTCCATAT
1 CACATCCACATTCCATAT
6927622 CACAT
1 CACAT
6927627 TTTATATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (18 bp):
CACATCCACATTCCATAT
Found at i:6928974 original size:90 final size:89
Alignment explanation
Indices: 6928822--6928994 Score: 274
Period size: 90 Copynumber: 1.9 Consensus size: 89
6928812 ACACACCCTT
* *
6928822 TTATAGCCAAGTTACCCTAATCATATTAGAGTTTTATTATTTCAAATTTATTAAATCTATATTTA
1 TTATAGCCAAGTTACCCTAATCATATTAGAGCTTTATTATTTCAAATTAATTAAATCTATATTTA
* *
6928887 ATTAATTGGAATTTAATAATCATC
66 ATTAATTGAAATTAAATAATCATC
* * *
6928911 TTATATCCATGTTACCCTAATCATATTAGGGACTTTATTATTTCAAATTAATTAAATCTATATTT
1 TTATAGCCAAGTTACCCTAATCATATTAGAG-CTTTATTATTTCAAATTAATTAAATCTATATTT
6928976 AATTAATTGAAATTAAATA
65 AATTAATTGAAATTAAATA
6928995 TTCAGGATTA
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
89 28 0.37
90 48 0.63
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (89 bp):
TTATAGCCAAGTTACCCTAATCATATTAGAGCTTTATTATTTCAAATTAATTAAATCTATATTTA
ATTAATTGAAATTAAATAATCATC
Found at i:6943771 original size:4 final size:4
Alignment explanation
Indices: 6943762--6943791 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
6943752 TATGAGTAAC
*
6943762 AATA AATA AATG AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
6943792 CAATGGTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:6944473 original size:53 final size:55
Alignment explanation
Indices: 6944347--6944462 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 55
6944337 CCACCAAATT
* * *
6944347 ACAAATAGTATAATTGTAAGTTTAGTCCTTACATTTTGTTCTCTCTTTAATTTCAG
1 ACAAA-AGTACAATTATTAGTTTAGTCCTTACATTTTGTTCTCTCTTTAATTTCAG
** * *
6944403 ACAATGGTACAATTATTAGTTTGGTCCTTACATTTTG-T-TCTCTTTAATTTTAGG
1 ACAAAAGTACAATTATTAGTTTAGTCCTTACATTTTGTTCTCTCTTTAATTTCA-G
6944457 ACAAAA
1 ACAAAA
6944463 TTAGGATATT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
53 13 0.26
54 6 0.12
55 27 0.54
56 4 0.08
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (55 bp):
ACAAAAGTACAATTATTAGTTTAGTCCTTACATTTTGTTCTCTCTTTAATTTCAG
Found at i:6946189 original size:2 final size:2
Alignment explanation
Indices: 6946182--6946264 Score: 166
Period size: 2 Copynumber: 41.5 Consensus size: 2
6946172 ATGCCCAAAA
6946182 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6946224 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6946265 AATAAAGTTG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 81 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6947790 original size:36 final size:35
Alignment explanation
Indices: 6947656--6947800 Score: 164
Period size: 37 Copynumber: 3.9 Consensus size: 35
6947646 GTTTCTCTCG
*
6947656 AAACAAAGTGTTGTCTCGCTAGAGACATTTTTTCTTAA
1 AAACAAA-T-TTGTCTCGCTTGAGACATTTTTTC-TAA
*
6947694 AAACAAATATTGTCTCGCTTGAGACAGTTTTCTCTAA
1 AAACAAAT-TTGTCTCGCTTGAGACA-TTTTTTCTAA
* * *
6947731 AAACAAATTTTGTCTCGCATGAGACAATTTTTCTCA
1 AAACAAA-TTTGTCTCGCTTGAGACATTTTTTCTAA
* *
6947767 AAACAAATTTCATCTCACTTGAGACATTTTTTCT
1 AAACAAATTT-GTCTCGCTTGAGACATTTTTTCT
6947801 TTAAGATGCA
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
35 3 0.03
36 33 0.35
37 43 0.46
38 14 0.15
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (35 bp):
AAACAAATTTGTCTCGCTTGAGACATTTTTTCTAA
Found at i:6947800 original size:74 final size:75
Alignment explanation
Indices: 6947647--6947797 Score: 184
Period size: 73 Copynumber: 2.0 Consensus size: 75
6947637 TTTGATGTTG
** * * *
6947647 TTTCTCTCGAAACAAAGTGTTGTCTCGCTAGAGACATTTTTTCTTAAAAACAAATATTGTCTCGC
1 TTTCTCTAAAAACAAAGTGTTGTCTCGCTAGAGACAATTTTTCTTAAAAACAAATATTATCTCAC
6947712 TTGAGACAGT
66 TTGAGACAGT
* *
6947722 TTTCTCTAAAAACAAA-TTTTGTCTCGC-ATGAGACAATTTTTC-TCAAAACAAAT-TTCATCTC
1 TTTCTCTAAAAACAAAGTGTTGTCTCGCTA-GAGACAATTTTTCTTAAAAACAAATATT-ATCTC
*
6947783 ACTTGAGACATT
64 ACTTGAGACAGT
6947795 TTT
1 TTT
6947798 TCTTTAAGAT
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
72 2 0.03
73 28 0.42
74 22 0.33
75 14 0.21
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (75 bp):
TTTCTCTAAAAACAAAGTGTTGTCTCGCTAGAGACAATTTTTCTTAAAAACAAATATTATCTCAC
TTGAGACAGT
Found at i:6948240 original size:66 final size:65
Alignment explanation
Indices: 6948058--6948268 Score: 273
Period size: 65 Copynumber: 3.2 Consensus size: 65
6948048 CTTTGGGATT
* * * *
6948058 GTTTCTGTTGAAATATCATCTTTGAGTTTGTTTCCCTTGAAACAAAATTT-TGTCTCTTGAGACA
1 GTTTCTCTTGAAATATCATCTTTGAGTATGTTTCCCTTGAAACAAAATTTGTCTCTCTTGAGATA
* ** * *
6948122 GTTTCTCTTGAAACAATCATCTTTGAG-ATCGTTTCCCTTGAAATGAATTTTGTCTCTCTTGATA
1 GTTTCTCTTGAAA-TATCATCTTTGAGTAT-GTTTCCCTTGAAACAAAATTTGTCTCTCTTGAGA
6948186 TA
64 TA
* *
6948188 GTTTCTCTTGAAATTTCATCTTTGAGTATGTTTCCCTTGAAACAAAAGTTTGTCTCTTTTGAGAT
1 GTTTCTCTTGAAATATCATCTTTGAGTATGTTTCCCTTGAAACAAAA-TTTGTCTCTCTTGAGAT
6948253 A
65 A
*
6948254 ATTTCTCTTGAAATA
1 GTTTCTCTTGAAATA
6948269 AATCCCTAAA
Statistics
Matches: 124, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
64 13 0.10
65 56 0.45
66 55 0.44
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (65 bp):
GTTTCTCTTGAAATATCATCTTTGAGTATGTTTCCCTTGAAACAAAATTTGTCTCTCTTGAGATA
Found at i:6948508 original size:130 final size:134
Alignment explanation
Indices: 6948270--6948621 Score: 419
Period size: 130 Copynumber: 2.6 Consensus size: 134
6948260 CTTGAAATAA
* * * * *
6948270 ATCCCTAAAGATGGTCAGTCATCCTCATCGCGTAGGAATCGTGTCATCCACTGATCAGATCTCCT
1 ATCCCTAAAGATGGCCAGTCATCCTCATCACGAAGGAACCGTGTCATCCACTGACCAGATCTCCT
* * * *
6948335 CATCA-AGTAGGAACCGCGTCACCCTTAGATAACCAGTCGTCCTCATCACATAGAAACCATG-T-
66 CATCACA-TAGGAGCCGTGTCACCCCTAGATAACAAGTCGTCCTCATCACATAGAAACCATGTTA
6948397 T-ATC
130 TCATC
* * * *
6948401 ATCCCTAAAGATGGCCAGTCATTCTTATCACGAAGGAACCGTGTCATCC-CCGACCAGGTCTCCT
1 ATCCCTAAAGATGGCCAGTCATCCTCATCACGAAGGAACCGTGTCATCCACTGACCAGATCTCCT
* * * * *
6948465 TATCACATAGGAGCCGTGTCACCCCTAGATAACAAGTCGTCCTCATCGCTTAGGAACCCTGTTAT
66 CATCACATAGGAGCCGTGTCACCCCTAGATAACAAGTCGTCCTCATCACATAGAAACCATGTTAT
6948530 CATC
131 CATC
* * * **
6948534 ATCCCTAAAGATGGCCAAGACGTCCTCAACAC-ATAGGAACAATGTCATCCACTGACCAGATCTC
1 ATCCCTAAAGATGGCC-AGTCATCCTCATCACGA-AGGAACCGTGTCATCCACTGACCAGATCTC
*
6948598 CTCATCACGTAGGAGCCGTGTCAC
64 CTCATCACATAGGAGCCGTGTCAC
6948622 TCTTAGACGA
Statistics
Matches: 185, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
130 62 0.34
131 45 0.24
132 1 0.01
133 20 0.11
134 24 0.13
135 33 0.18
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (134 bp):
ATCCCTAAAGATGGCCAGTCATCCTCATCACGAAGGAACCGTGTCATCCACTGACCAGATCTCCT
CATCACATAGGAGCCGTGTCACCCCTAGATAACAAGTCGTCCTCATCACATAGAAACCATGTTAT
CATC
Found at i:6948821 original size:3 final size:3
Alignment explanation
Indices: 6948813--6948902 Score: 164
Period size: 3 Copynumber: 30.0 Consensus size: 3
6948803 GTCTTAAAAA
6948813 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6948860 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT CATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT
6948903 TTGTTTACAT
Statistics
Matches: 85, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.02
3 80 0.94
4 3 0.04
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:6951771 original size:128 final size:128
Alignment explanation
Indices: 6951627--6951911 Score: 299
Period size: 128 Copynumber: 2.2 Consensus size: 128
6951617 AAAAAATGTT
6951627 GCAATAGG-TATTGATATTTAGCGGCGTTTGTCAC-ACAAACGCCGCAATAGGTGTTGA-ATTTA
1 GCAATAGGTTA-TGATATTTAGCGGCGTTTGTCACTA-AAACGCCGCAATAGGTGTTGATATTTA
* * * * *
6951689 GCGGCGTTTGTCAGAAAAACACCGCAATAGGTGTTGATATTTAGCGGGGTTTTTTAGATAAACGC
64 GCGGCGTTT-TCACAAAAACACCGCAATAGATGTTGATATTTAGCGGCGTTTTTTACACAAACGC
6951754 C
128 C
* * * * * * *
6951755 GCAATAGGTTATGATATTTAGCGGCGTTTTTCTCTAAAATGTCGCAGTAGGTGTTGATGTTTTGC
1 GCAATAGGTTATGATATTTAGCGGCGTTTGTCACTAAAACGCCGCAATAGGTGTTGATATTTAGC
* * * * * * *
6951820 GGCGTTTTCCCACAAACGCCGCAGTAGATGTTGATGTTTTGCGGCGTTTTTTCCACAAACGCC
66 GGCGTTTTCACAAAAACACCGCAATAGATGTTGATATTTAGCGGCGTTTTTTACACAAACGCC
* * * *
6951883 G-AAGTAGGTTTTGATGTTTTGCGACGTTT
1 GCAA-TAGGTTATGATATTTAGCGGCGTTT
6951912 TTGCTAGAAA
Statistics
Matches: 130, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
127 2 0.02
128 113 0.87
129 15 0.12
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (128 bp):
GCAATAGGTTATGATATTTAGCGGCGTTTGTCACTAAAACGCCGCAATAGGTGTTGATATTTAGC
GGCGTTTTCACAAAAACACCGCAATAGATGTTGATATTTAGCGGCGTTTTTTACACAAACGCC
Found at i:6951869 original size:85 final size:85
Alignment explanation
Indices: 6951627--6951912 Score: 274
Period size: 85 Copynumber: 3.4 Consensus size: 85
6951617 AAAAAATGTT
*
6951627 GCAATAGGTATTGATATTTAGCGGCGTTTGTCACACAAACGCCGCAATAGGTGTTGA-ATTTAGC
1 GCAATAGGTGTTGATATTTAGCGGCGTTT-TCACACAAACGCCGCAATAGGTGTTGATATTTAGC
* ** *
6951691 GGCGTTTGTCAGAAAAACACC
65 GGCGTTTTTCTCAAAAACGCC
* * * *
6951712 GCAATAGGTGTTGATATTTAGCGGGGTTTTTTAGATAAACGCCGCAATAGGT-TATGATATTTAG
1 GCAATAGGTGTTGATATTTAGCGGCG-TTTTCACACAAACGCCGCAATAGGTGT-TGATATTTAG
* * *
6951776 CGGCGTTTTTCTCTAAAATGTC
64 CGGCGTTTTTCTCAAAAACGCC
* * * * * * * *
6951798 GCAGTAGGTGTTGATGTTTTGCGGCGTTTTCCCACAAACGCCGCAGTAGATGTTGATGTTTTGCG
1 GCAATAGGTGTTGATATTTAGCGGCGTTTTCACACAAACGCCGCAATAGGTGTTGATATTTAGCG
*
6951863 GCGTTTTT-TCCACAAACGCC
66 GCGTTTTTCT-CAAAAACGCC
* * * *
6951883 G-AAGTAGGTTTTGATGTTTTGCGACGTTTT
1 GCAA-TAGGTGTTGATATTTAGCGGCGTTTT
6951913 TGCTAGAAAC
Statistics
Matches: 164, Mismatches: 31, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
84 3 0.02
85 114 0.70
86 47 0.29
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (85 bp):
GCAATAGGTGTTGATATTTAGCGGCGTTTTCACACAAACGCCGCAATAGGTGTTGATATTTAGCG
GCGTTTTTCTCAAAAACGCC
Found at i:6951897 original size:43 final size:43
Alignment explanation
Indices: 6951627--6951913 Score: 255
Period size: 43 Copynumber: 6.7 Consensus size: 43
6951617 AAAAAATGTT
* *
6951627 GCAATAGGTATTGATATTTAGCGGCG-TTTGTCACACAAACGCC
1 GCAATAGGTGTTGATATTTAGCGGCGTTTTTTC-CACAAACGCC
* * * *
6951670 GCAATAGGTGTTGA-ATTTAGCGGCG-TTTGTCAGAAAAACACC
1 GCAATAGGTGTTGATATTTAGCGGCGTTTTTTC-CACAAACGCC
* ** *
6951712 GCAATAGGTGTTGATATTTAGCGGGGTTTTTTAGATAAACGCC
1 GCAATAGGTGTTGATATTTAGCGGCGTTTTTTCCACAAACGCC
* * *
6951755 GCAATAGGT-TATGATATTTAGCGGCGTTTTTCTCTA-AAATGTC
1 GCAATAGGTGT-TGATATTTAGCGGCGTTTTT-TCCACAAACGCC
* * * *
6951798 GCAGTAGGTGTTGATGTTTTGCGGCG-TTTTCCCACAAACGCC
1 GCAATAGGTGTTGATATTTAGCGGCGTTTTTTCCACAAACGCC
* * * *
6951840 GCAGTAGATGTTGATGTTTTGCGGCGTTTTTTCCACAAACGCC
1 GCAATAGGTGTTGATATTTAGCGGCGTTTTTTCCACAAACGCC
* * * *
6951883 G-AAGTAGGTTTTGATGTTTTGCGACGTTTTT
1 GCAA-TAGGTGTTGATATTTAGCGGCGTTTTT
6951914 GCTAGAAACA
Statistics
Matches: 209, Mismatches: 27, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.01
42 75 0.36
43 125 0.60
44 7 0.03
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
GCAATAGGTGTTGATATTTAGCGGCGTTTTTTCCACAAACGCC
Found at i:6952373 original size:21 final size:21
Alignment explanation
Indices: 6952327--6952396 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
6952317 TGATATGCTT
* *
6952327 CTTCTCTCTGTGCTGCCGTTG
1 CTTCTCTCTGTGCTACCGCTG
* *
6952348 ATTCTCTTTGTGCTACCGCTG
1 CTTCTCTCTGTGCTACCGCTG
* * **
6952369 CTTCTTTCTCTGCTTTCGCTG
1 CTTCTCTCTGTGCTACCGCTG
*
6952390 CTGCTCT
1 CTTCTCT
6952397 GGCTGCTTCT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.03, C:0.33, G:0.19, T:0.46
Consensus pattern (21 bp):
CTTCTCTCTGTGCTACCGCTG
Found at i:6952433 original size:21 final size:20
Alignment explanation
Indices: 6952364--6952426 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
6952354 TTTGTGCTAC
* *
6952364 CGCTGCTTCTTTCTCTGCTTT
1 CGCTGCTGCTCTCTCTGC-TT
**
6952385 CGCTGCTGCTCTGGCTGCTT
1 CGCTGCTGCTCTCTCTGCTT
6952405 CTGCTGCTGCTCTCTCTGCTT
1 C-GCTGCTGCTCTCTCTGCTT
6952426 C
1 C
6952427 CCTTGCTTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 3 0.09
21 32 0.91
ACGTcount: A:0.00, C:0.37, G:0.21, T:0.43
Consensus pattern (20 bp):
CGCTGCTGCTCTCTCTGCTT
Found at i:6957809 original size:2 final size:2
Alignment explanation
Indices: 6957802--6957833 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6957792 TTTTTGAATA
6957802 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6957834 TAAAAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6960542 original size:41 final size:41
Alignment explanation
Indices: 6960466--6960574 Score: 107
Period size: 41 Copynumber: 2.7 Consensus size: 41
6960456 ATAAATGCCG
* *
6960466 CTAAAG-ATCATGGATATTACGGCATTTTTCTACAAACACCA
1 CTAAAGTA-CATGGATATTGCGGCATTTATCTACAAACACCA
* *
6960507 CTAAAGTACATGGATATTGCGGCGTTTGATC-ACAAACGCCA
1 CTAAAGTACATGGATATTGCGGCATTT-ATCTACAAACACCA
* * *
6960548 -AATAAGTACAAGGCTATTGCGGCATTT
1 CTA-AAGTACATGGATATTGCGGCATTT
6960575 TCGCACAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
40 1 0.02
41 53 0.93
42 3 0.05
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (41 bp):
CTAAAGTACATGGATATTGCGGCATTTATCTACAAACACCA
Found at i:6960582 original size:41 final size:41
Alignment explanation
Indices: 6960510--6960588 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
6960500 AACACCACTA
* * * *
6960510 AAGTACATGGATATTGCGGCGTTTGATCACAAACGCCAAAT
1 AAGTACAAGGATATTGCGGCATTTGAGCACAAAAGCCAAAT
* **
6960551 AAGTACAAGGCTATTGCGGCATTTTCGCACAAAAGCCA
1 AAGTACAAGGATATTGCGGCATTTGAGCACAAAAGCCA
6960589 CTAAATTAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (41 bp):
AAGTACAAGGATATTGCGGCATTTGAGCACAAAAGCCAAAT
Found at i:6960926 original size:82 final size:83
Alignment explanation
Indices: 6960703--6960935 Score: 227
Period size: 83 Copynumber: 2.8 Consensus size: 83
6960693 TTTGTGGGAC
* * *
6960703 AAACACCGCTAAATTATTACTCTATTGCGGCGTTTT-TTGCAAAAACGCCACTATAAACAAACCT
1 AAACACCGCTAAATTACTACTCTATTGCGTC-TTTTGTTGAAAAAACGCCACTATAAACAAACCT
* ** *
6960767 TTTGCGACATTTGTTTAAT
65 ATCACGACATTTGTATAAT
* * * * * * * * * **
6960786 AAACACCGCTAAATTACTTCTCAATAGCGTCGTTTGTTGAACAAATGACTCTAAAAACAATGCTA
1 AAACACCGCTAAATTACTACTCTATTGCGTCTTTTGTTGAAAAAACGCCACTATAAACAAACCTA
* *
6960851 TCACGGCGTTTGTATAA-
66 TCACGACATTTGTATAAT
* *
6960868 AAACGCCGCTAAATTACAACTCTATTGCGTCTTTTGTTGAAAAAACGCCACTATAAACACAACTC
1 AAACACCGCTAAATTACTACTCTATTGCGTCTTTTGTTGAAAAAACGCCACTATAAACA-AAC-C
6960933 TAT
64 TAT
6960936 TGCGTCGTTT
Statistics
Matches: 114, Mismatches: 33, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
82 51 0.45
83 59 0.52
84 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.30
Consensus pattern (83 bp):
AAACACCGCTAAATTACTACTCTATTGCGTCTTTTGTTGAAAAAACGCCACTATAAACAAACCTA
TCACGACATTTGTATAAT
Found at i:6960999 original size:42 final size:42
Alignment explanation
Indices: 6960683--6961007 Score: 179
Period size: 42 Copynumber: 7.8 Consensus size: 42
6960673 ATAAACAACA
** * * **
6960683 TATTGCGGCGTTTGTGGGACAAACACCGCTAAATTATTACTC
1 TATTGCGGCGTTTGTTTGAAAAACGCCGCTAAATTACAACTC
*
6960725 TATTGCGGCGTTT-TTTGCAAAAACGCCACTATAA--ACAAAC-C
1 TATTGCGGCGTTTGTTTG-AAAAACGCCGCTA-AATTAC-AACTC
* * * * **
6960766 TTTTGCGACATTTGTTT-AATAAACACCGCTAAATTACTTCTC
1 TATTGCGGCGTTTGTTTGAA-AAACGCCGCTAAATTACAACTC
* * * * * * *
6960808 AATAGCGTCGTTTG-TTGAACAAATGACTCTAAA-AACAA-TGC
1 TATTGCGGCGTTTGTTTGAA-AAACGCCGCTAAATTACAACT-C
** *
6960849 TATCACGGCGTTTGTAT-AAAAACGCCGCTAAATTACAACTC
1 TATTGCGGCGTTTGTTTGAAAAACGCCGCTAAATTACAACTC
* * * **
6960890 TATTGCGTCTTTTG-TTGAAAAAACGCCACTATAAACACAACTC
1 TATTGCGGCGTTTGTTTG-AAAAACGCCGCTA-AATTACAACTC
* * * * *
6960933 TATTGCGTCGTTTAAG-CT-ATAAACGCTGCTAAATTACCACTC
1 TATTGCGGCGTTT--GTTTGAAAAACGCCGCTAAATTACAACTC
6960975 TATTGCGGCGTTTGTTTGAAAAACGCCGCTAAA
1 TATTGCGGCGTTTGTTTGAAAAACGCCGCTAAA
6961008 GTATCATTTT
Statistics
Matches: 207, Mismatches: 56, Indels: 40
0.68 0.18 0.13
Matches are distributed among these distances:
40 17 0.08
41 57 0.28
42 98 0.47
43 33 0.16
45 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
TATTGCGGCGTTTGTTTGAAAAACGCCGCTAAATTACAACTC
Found at i:6975353 original size:29 final size:29
Alignment explanation
Indices: 6975293--6975353 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
6975283 AGCCCATTAT
** *
6975293 TCTTTTACTCAACAGTGTTTATTCGTTCA
1 TCTTTTACTCAACAGTGTTTAACCATTCA
*
6975322 TCTTTTACTCAACAGTGTTTAACCATTTA
1 TCTTTTACTCAACAGTGTTTAACCATTCA
6975351 TCT
1 TCT
6975354 AACTAGCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.08, T:0.48
Consensus pattern (29 bp):
TCTTTTACTCAACAGTGTTTAACCATTCA
Found at i:6975853 original size:34 final size:34
Alignment explanation
Indices: 6975810--6976019 Score: 150
Period size: 34 Copynumber: 5.5 Consensus size: 34
6975800 TCATGCCAAA
6975810 AATGCACCCATATGCATTATTCTTTTATGCTGAT
1 AATGCACCCATATGCATTATTCTTTTATGCTGAT
* **
6975844 AATACACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCAAT
1 AATGCACCCATATGCA-TT-A--T-T--C-T--TTT-ATGCTGAT
6975889 AATGCACCCATATGCATTATTCTTTTATGCTGAT
1 AATGCACCCATATGCATTATTCTTTTATGCTGAT
* **
6975923 AATGCACCTATATGCATTTCACCTATGGCATCCTTTCATGCCAAT
1 AATGCACCCATATGCA-TT-A--T-T--C-T--TTT-ATGCTGAT
* *
6975968 AATGCACCCATATGCATTATTCTTTTACGTTGAT
1 AATGCACCCATATGCATTATTCTTTTATGCTGAT
6976002 AATGCACCCATATGCATT
1 AATGCACCCATATGCATT
6976020 TCAGCTATGG
Statistics
Matches: 140, Mismatches: 14, Indels: 44
0.71 0.07 0.22
Matches are distributed among these distances:
34 58 0.41
35 10 0.07
36 2 0.01
37 2 0.01
38 4 0.03
39 2 0.01
40 2 0.01
41 4 0.03
42 2 0.01
43 2 0.01
44 10 0.07
45 42 0.30
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (34 bp):
AATGCACCCATATGCATTATTCTTTTATGCTGAT
Found at i:6975907 original size:79 final size:79
Alignment explanation
Indices: 6975788--6976074 Score: 484
Period size: 79 Copynumber: 3.6 Consensus size: 79
6975778 GCATTTTTAG
* * * *
6975788 TATGACATCTTTTCATGCCAAAAATGCACCCATATGCATTATTCTTTTATGCTGATAATACACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGATAATGCACCC
6975853 ATATGCATTTCAGC
66 ATATGCATTTCAGC
*
6975867 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGATAATGCACCT
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGATAATGCACCC
*
6975932 ATATGCATTTCACC
66 ATATGCATTTCAGC
* *
6975946 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTACGTTGATAATGCACCC
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGATAATGCACCC
6976011 ATATGCATTTCAGC
66 ATATGCATTTCAGC
* *
6976025 TATGGCATCCTTTCATGCCAAGAATGCACCCATATGCATTATTCATTTAT
1 TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTAT
6976075 TCATTCGTTC
Statistics
Matches: 195, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 195 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (79 bp):
TATGGCATCCTTTCATGCCAATAATGCACCCATATGCATTATTCTTTTATGCTGATAATGCACCC
ATATGCATTTCAGC
Found at i:6975972 original size:45 final size:44
Alignment explanation
Indices: 6975921--6976064 Score: 146
Period size: 45 Copynumber: 3.5 Consensus size: 44
6975911 TTTTATGCTG
*
6975921 ATAATGCACCTATATGCATTTCACCTATGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCA-CTATGGCATCCTTTCATGCCA
* ***
6975966 ATAATGCACCCATATGCA-TT-A-T-T--C-T--TTT-ACGTTG
1 ATAATGCACCCATATGCATTTCACTATGGCATCCTTTCATGCCA
6976000 ATAATGCACCCATATGCATTTCAGCTATGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCA-CTATGGCATCCTTTCATGCCA
*
6976045 AGAATGCACCCATATGCATT
1 ATAATGCACCCATATGCATT
6976065 ATTCATTTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
34 20 0.26
35 5 0.06
36 1 0.01
37 1 0.01
38 2 0.03
39 1 0.01
40 1 0.01
41 2 0.03
42 1 0.01
43 1 0.01
44 5 0.06
45 38 0.49
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (44 bp):
ATAATGCACCCATATGCATTTCACTATGGCATCCTTTCATGCCA
Found at i:6976627 original size:95 final size:94
Alignment explanation
Indices: 6976488--6976686 Score: 299
Period size: 95 Copynumber: 2.1 Consensus size: 94
6976478 ACCCTGGCAC
* * * * *
6976488 CGATACTTCTATACTATGGTACTGATACCCCCTTCTAGTATCGATACCAATTTTAGGTCCGATGT
1 CGATACTACCATACTATGGTACTGATACCCCCTTCCAGTATCGATACCAATTTTAGCTCCGATGA
*
6976553 TGTCTGGTATCGATACCTTTACCATGGTAT
66 TGTCTGGTATCGATAAC-TTACCATGGTAT
* *
6976583 CGATACTACCATACTATGGTACTGATACCCCCTTCCGGTATCGATACCAATTTTAGCTTCGATGA
1 CGATACTACCATACTATGGTACTGATACCCCCTTCCAGTATCGATACCAATTTTAGCTCCGATGA
* *
6976648 TGTTTGGTATCGATAACTTACTATGGTAT
66 TGTCTGGTATCGATAACTTACCATGGTAT
6976677 CGATACTACC
1 CGATACTACC
6976687 TTGTCGGTAT
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
94 21 0.22
95 73 0.78
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (94 bp):
CGATACTACCATACTATGGTACTGATACCCCCTTCCAGTATCGATACCAATTTTAGCTCCGATGA
TGTCTGGTATCGATAACTTACCATGGTAT
Found at i:6981232 original size:18 final size:18
Alignment explanation
Indices: 6981209--6981348 Score: 199
Period size: 18 Copynumber: 7.8 Consensus size: 18
6981199 ACATAGAATT
* * *
6981209 TGTCCCGTAGGACCACTA
1 TGTCCCGAAGGACCATTG
*
6981227 TGTCCCGAATGACCATTG
1 TGTCCCGAAGGACCATTG
6981245 TGTCCCGAAGGACCATTG
1 TGTCCCGAAGGACCATTG
*
6981263 TGTCCCGAAGGATCATTG
1 TGTCCCGAAGGACCATTG
6981281 TGTCCCGAAGGACCATTG
1 TGTCCCGAAGGACCATTG
6981299 TGTCCCGAAGGACCATTG
1 TGTCCCGAAGGACCATTG
* * *
6981317 TGTCCCGAAGAACCACTA
1 TGTCCCGAAGGACCATTG
*
6981335 TATCCCGAAGGACC
1 TGTCCCGAAGGACC
6981349 GCGTAGACCC
Statistics
Matches: 110, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 110 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (18 bp):
TGTCCCGAAGGACCATTG
Found at i:6985448 original size:18 final size:18
Alignment explanation
Indices: 6985419--6985488 Score: 95
Period size: 18 Copynumber: 3.9 Consensus size: 18
6985409 GCGTAGAATT
*
6985419 TGTCCCGTAGGACCACTA
1 TGTCCCGAAGGACCACTA
* *
6985437 TGTCTCGAAGGACCACTG
1 TGTCCCGAAGGACCACTA
*
6985455 TGTCCCAAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
6985473 TATCCCGAAGGACCAC
1 TGTCCCGAAGGACCAC
6985489 GTAGACCCTC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:6989690 original size:18 final size:19
Alignment explanation
Indices: 6989647--6989698 Score: 70
Period size: 18 Copynumber: 2.7 Consensus size: 19
6989637 CAGATGTGCG
*
6989647 GTATCGATACTAATGTAATTA
1 GTATCGATACTAATG--ATGA
6989668 GTATCGATACTAATG-TGA
1 GTATCGATACTAATGATGA
6989686 GTATCGATACTAA
1 GTATCGATACTAA
6989699 GAGAAAGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 15 0.50
21 15 0.50
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (19 bp):
GTATCGATACTAATGATGA
Found at i:6989808 original size:95 final size:95
Alignment explanation
Indices: 6989700--6989872 Score: 258
Period size: 95 Copynumber: 1.8 Consensus size: 95
6989690 CGATACTAAG
* * * ** * *
6989700 AGAAAGGTATCGATACCTTGGAATCCAGAAT-GTATAAATGGTATCGATATTGAAAGGGAGTATC
1 AGAAAGGTATCGATACCATAGAATACAGAATACCA-AAAGGGTATCGATACTGAAAGGGAGTATC
6989764 GGTACCATAGTATAGAATTATAGGTACTAGA
65 GGTACCATAGTATAGAATTATAGGTACTAGA
*
6989795 AGAAAGGTATCGATACCATAGATTACAGAATACCAAAAGGGTATCGATACTGAAAGGGAGTATCG
1 AGAAAGGTATCGATACCATAGAATACAGAATACCAAAAGGGTATCGATACTGAAAGGGAGTATCG
6989860 GTACCATAGTATA
66 GTACCATAGTATA
6989873 AAAGTATCGA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
95 68 0.99
96 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (95 bp):
AGAAAGGTATCGATACCATAGAATACAGAATACCAAAAGGGTATCGATACTGAAAGGGAGTATCG
GTACCATAGTATAGAATTATAGGTACTAGA
Found at i:6990440 original size:81 final size:81
Alignment explanation
Indices: 6990305--6990802 Score: 708
Period size: 81 Copynumber: 6.1 Consensus size: 81
6990295 ATTCTTAAAA
* * * *
6990305 TAAAAGATTAATTGCCTAGCTGTGCATTTGGAAGAAATGTGTCAATATTGCAAGTTAGTTGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
*
6990370 GCTAAATGTCTTTGAG
66 GCTAAATGCCTTTGAG
* * * * * * *
6990386 TAAAACATTAATTGCCTAGCTATGCATTTGGTATAAATGTGTCAATATTGCAAGTTAGATGAAAA
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
6990451 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
* * *
6990467 TAAAAGATTAATTGCCTAACTATGCATTTGGCAGAAAGGTGTCAATATTGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
6990532 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
* * *
6990548 TAAAAGATTAATTGCCTAGTTGTGAATTTGGCAGAAAGGTACCAATATTGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
*
6990613 GCTAAATGTCTTTGAG
66 GCTAAATGCCTTTGAG
* * * * ***
6990629 TAAAAGATTAATTGCCTAGTTGTGCATTTGGTAGAAAGGTGCCAATATTGCAATTTATATTTCAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
*
6990694 GCTAAATGCCTTTAAG
66 GCTAAATGCCTTTGAG
* * * *
6990710 TAGAAGATTAATTGCCTAGCTGTGCAATTGGCAAAAAGGTGCCAATATTGCAAGTTAGATGAAAT
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
6990775 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
*
6990791 TAAAAGTTTAAT
1 TAAAAGATTAAT
6990803 GAATTTGAGA
Statistics
Matches: 373, Mismatches: 44, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 373 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
GCTAAATGCCTTTGAG
Found at i:6993265 original size:21 final size:18
Alignment explanation
Indices: 6993241--6993292 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 18
6993231 TAGATGTGCG
6993241 GTATCGATACTAATGTAATTA
1 GTATCGATACTAATG---TTA
*
6993262 GTATCGATACTGATGTTA
1 GTATCGATACTAATGTTA
6993280 GTATCGATACTAA
1 GTATCGATACTAA
6993293 GAGAAAGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 15 0.52
21 14 0.48
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
GTATCGATACTAATGTTA
Found at i:6993401 original size:95 final size:95
Alignment explanation
Indices: 6993279--6993481 Score: 302
Period size: 95 Copynumber: 2.1 Consensus size: 95
6993269 TACTGATGTT
* * *
6993279 AGTATCGATACTAAGAGAAAGGTATCGATACCTTGGAATCCAGAATG-TATAAATGGTATCGATA
1 AGTATCGATACTAAGAGAAAGGTATCGATACCATGGAATACAGAATGCCA-AAATGGTATCGATA
*
6993343 CTGAAAGGGAGTATCGGTACCATAGTATAGA
65 CTGAAAGGGAGTATCGGTACCATAGTATAAA
* * * *
6993374 ATTATCGGTACT-AGAAGAAAGGTATCGATACCATGGATTACAGAATGCCAACATGGTATCGATA
1 AGTATCGATACTAAG-AGAAAGGTATCGATACCATGGAATACAGAATGCCAAAATGGTATCGATA
6993438 CTGAAAGGGAGTATCGGTACCATAGTATAAA
65 CTGAAAGGGAGTATCGGTACCATAGTATAAA
6993469 AGTATCGATACTA
1 AGTATCGATACTA
6993482 TTAAGCCAAG
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
94 2 0.02
95 92 0.97
96 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (95 bp):
AGTATCGATACTAAGAGAAAGGTATCGATACCATGGAATACAGAATGCCAAAATGGTATCGATAC
TGAAAGGGAGTATCGGTACCATAGTATAAA
Found at i:6994014 original size:81 final size:81
Alignment explanation
Indices: 6993879--6994376 Score: 800
Period size: 81 Copynumber: 6.1 Consensus size: 81
6993869 ATTCTTAAAA
*
6993879 TAAAAGATTAATTGCCTAGCTGTGCATTTGGAAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
* *
6993944 GCTAAATGTCGTTGAG
66 GCTAAATGCCTTTGAG
* * * *
6993960 TAAAACATTAATTGCCTAGCTGTGCATTTGGTAGAAAGGTGTCAATATTGCAAGTTAGATGAAAA
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
6994025 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
* * *
6994041 TAAAAGATTAATTGCCTAACTATGCATTTGGCAGAAAGGTGTCAATATTGCAAGTTAGATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
6994106 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
* * **
6994122 TAAAAGATTAATTGCCTAGTTGTGAATTTGGCAGAAAGGTATCAATATTGCAAGTTAGA-GTAAA
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATG-AAA
6994186 GGCTAAATGCCTTTGAG
65 GGCTAAATGCCTTTGAG
* * *
6994203 TAAAAGATTAATTGCCTAGCTGTGCATTTGGTAGAAATGTGCCAATATTGCAAGTTAGATGAGAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
* *
6994268 GCTAAATCCCTTTTAG
66 GCTAAATGCCTTTGAG
*
6994284 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTATATGAAAG
1 TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
6994349 GCTAAATGCCTTTGAG
66 GCTAAATGCCTTTGAG
6994365 TAAAAGATTAAT
1 TAAAAGATTAAT
6994377 GAATTTGAGA
Statistics
Matches: 384, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
80 1 0.00
81 382 0.99
82 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (81 bp):
TAAAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAG
GCTAAATGCCTTTGAG
Found at i:6996799 original size:95 final size:95
Alignment explanation
Indices: 6996688--6996869 Score: 267
Period size: 95 Copynumber: 1.9 Consensus size: 95
6996678 CAATACTAAG
* * * *
6996688 AGAAAGGTATCGATACCTTGGAATCCAGAATG-TATAAATGGTGTCGATACTAAAAGGGAGTATA
1 AGAAAGGTATCGATACCATGGAATACAGAATGCCA-AAATGGTATCGATACTAAAAGGGAGTATA
* * *
6996752 GGTACCATAGTATAGAATTATCGGTACTAGA
65 GGTACCATAATATAAAAGTATCGGTACTAGA
* *
6996783 AGAAAGGTATCGATACCATGGATTACAGAATGCCAAAATGGTATCGATACTAAAAGGGAGTATCG
1 AGAAAGGTATCGATACCATGGAATACAGAATGCCAAAATGGTATCGATACTAAAAGGGAGTATAG
6996848 GTACCATAATATAAAAGTATCG
66 GTACCATAATATAAAAGTATCG
6996870 ATACCATGGT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 76 0.99
96 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.25
Consensus pattern (95 bp):
AGAAAGGTATCGATACCATGGAATACAGAATGCCAAAATGGTATCGATACTAAAAGGGAGTATAG
GTACCATAATATAAAAGTATCGGTACTAGA
Found at i:6997433 original size:81 final size:81
Alignment explanation
Indices: 6997294--6997789 Score: 803
Period size: 81 Copynumber: 6.1 Consensus size: 81
6997284 TTCTTAAAAT
* * *
6997294 AAAGATTAATTGCCTAGCTGTGCATTTGGAAGAAATGTGTCAATATTGCAAGTTAGATGAAAGGC
1 AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
*
6997359 TAAATGTCTTTGAGTA
66 TAAATGCCTTTGAGTA
* * * * **
6997375 AAACATTAATTTCCTAGCTGTGCATTTGGCAGAAATGTGTCAATATTGCAAGTTAGATGAAAAAC
1 AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
6997440 TAAATGCCTTTGAGTA
66 TAAATGCCTTTGAGTA
* * *
6997456 AAAGATTAATTGCCTAACTATGCATTTGGCAGAAAGGTGTCAATATTGCAAGTTAGATGAAAGGC
1 AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
6997521 TAAATGCCTTTGAGTA
66 TAAATGCCTTTGAGTA
* * *
6997537 AAAGATTAATTGCCTAGTTGTGAATTTGGCAGAAATGTGCCAATATTGCAAGTTAGATGAAAGGC
1 AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
*
6997602 TAAATGCTTTTGAGTA
66 TAAATGCCTTTGAGTA
* *
6997618 AAAGATTAATTACCTAGCTGTGCATTTGGTAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
1 AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
*
6997683 TAAATGCCTTTAAGTA
66 TAAATGCCTTTGAGTA
*
6997699 AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTTCAAGTTAGATGAAAGGC
1 AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
6997764 TAAATGCCTTTGAGTA
66 TAAATGCCTTTGAGTA
6997780 AAAGATTAAT
1 AAAGATTAAT
6997790 GAATTTGAGA
Statistics
Matches: 384, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 384 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (81 bp):
AAAGATTAATTGCCTAGCTGTGCATTTGGCAGAAAGGTGCCAATATTGCAAGTTAGATGAAAGGC
TAAATGCCTTTGAGTA
Found at i:6999801 original size:21 final size:18
Alignment explanation
Indices: 6999777--6999828 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
6999767 CAGATGTGCG
*
6999777 GTATCGATACTAATGTAATTA
1 GTATCGATACTAATG---TGA
*
6999798 GTATCGATACTGATGTGA
1 GTATCGATACTAATGTGA
6999816 GTATCGATACTAA
1 GTATCGATACTAA
6999829 GAGAAAGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 14 0.50
21 14 0.50
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (18 bp):
GTATCGATACTAATGTGA
Found at i:6999937 original size:95 final size:95
Alignment explanation
Indices: 6999815--7000015 Score: 307
Period size: 95 Copynumber: 2.1 Consensus size: 95
6999805 TACTGATGTG
* * *
6999815 AGTATCGATACTAAGAGAAAGGTATCGATACCTTGGAATCCAGAATG-TATAAATGGTATCGATA
1 AGTATCGATACTAAGAGAAAGGTATCGATACCATGGAATACAGAATGCCA-AAATGGTATCGATA
*
6999879 CTGAAAGGGAGTATCGGTACCATAGTATAGA
65 CTGAAAGGGAGTATCGGTACCATAGTATAAA
* *
6999910 ATTATCGATACT-AGAAGAAAGGTATCGATACCATGGATTACAGAATGCCAAAATGGTATCGATA
1 AGTATCGATACTAAG-AGAAAGGTATCGATACCATGGAATACAGAATGCCAAAATGGTATCGATA
*
6999974 CTGAAAGGGAGTATCGGTACCATATTATAAA
65 CTGAAAGGGAGTATCGGTACCATAGTATAAA
7000005 AGTATCGATAC
1 AGTATCGATAC
7000016 CATTGTATGG
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
94 2 0.02
95 93 0.97
96 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.25
Consensus pattern (95 bp):
AGTATCGATACTAAGAGAAAGGTATCGATACCATGGAATACAGAATGCCAAAATGGTATCGATAC
TGAAAGGGAGTATCGGTACCATAGTATAAA
Found at i:7000576 original size:81 final size:81
Alignment explanation
Indices: 7000437--7000763 Score: 521
Period size: 81 Copynumber: 4.0 Consensus size: 81
7000427 TTCTTAAAAT
7000437 AAAGATTAATTGCCTAGCTGTGCATTTGGA-AGAAAGGTGTCAATATTGCAAGTTAGATGAAAGG
1 AAAGATTAATTGCCTAGCTGTGCATTT-GACAGAAAGGTGTCAATATTGCAAGTTAGATGAAAGG
*
7000501 CTAAATGTCTTTGAGTA
65 CTAAATGCCTTTGAGTA
* *
7000518 AAACATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATATTGCAAGTTAGATGAAAAGC
1 AAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATATTGCAAGTTAGATGAAAGGC
7000583 TAAATGCCTTTGAGTA
66 TAAATGCCTTTGAGTA
* * * *
7000599 AAAGATTAATTGCCTAACTATGCATTTGGCAGAAAGGTGTCAATATTGCAAGTTAGATGAAAGGT
1 AAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATATTGCAAGTTAGATGAAAGGC
* *
7000664 TATATGCCTTTGTGTA
66 TAAATGCCTTTGAGTA
* * * *
7000680 AAAGATTAATTGCCTAGTTGTGAATTTGGCAGAAATGTGTCAATATTGCAAGTTAGATGAAAGGC
1 AAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATATTGCAAGTTAGATGAAAGGC
7000745 TAAATGCCTTTGAGTA
66 TAAATGCCTTTGAGTA
7000761 AAA
1 AAA
7000764 TATTTTTTTG
Statistics
Matches: 226, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
80 2 0.01
81 224 0.99
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (81 bp):
AAAGATTAATTGCCTAGCTGTGCATTTGACAGAAAGGTGTCAATATTGCAAGTTAGATGAAAGGC
TAAATGCCTTTGAGTA
Found at i:7002354 original size:181 final size:182
Alignment explanation
Indices: 7001991--7002417 Score: 617
Period size: 181 Copynumber: 2.4 Consensus size: 182
7001981 AATATATTTC
* * * *
7001991 TCACTATAATTAAAATATATAACTAAAAACATAATTT-TCCACCAAAAATTTAAATCTCAATATT
1 TCACTATAATTAAAATATATAACTACAAACATAATTTGT-CACAAAAAAATTGAATCTCAATATT
* * *
7002055 TGTTGTGATAATATTTTTTATAATAATAACTATAAGTTATAGTTACAAAACATGTCACTCTGTAA
65 TGTTGTGATAATATTTTTCATAACAATAACTATAAGTTATAGTTACAAAACATGTCACTCTATAA
** * * *
7002120 CTTTTGTTTTTGCGCCAAAAATTGGAGGAAAACATTTGTGACTATAGATTTTG
130 CTTTTGTTTTTGCGCCAAAAACCGGAGAAAAACATTTGTAACTATACATTTTG
* * *
7002173 TCACTACAATTAAAATTTATAACTACAAACATAATTTGTCACGAAAAAATTGAATCTCAATATTT
1 TCACTATAATTAAAATATATAACTACAAACATAATTTGTCACAAAAAAATTGAATCTCAATATTT
* *
7002238 GTTGTGAT-A-ATTTTTCAGTAACAATAATTATAAGTTATAGTTACAAAACATGTTACTCTATAA
66 GTTGTGATAATATTTTTCA-TAACAATAACTATAAGTTATAGTTACAAAACATGTCACTCTATAA
*
7002301 CTTTTGTTTTTGCGCCAAAAACCGGAGAAAAAGATTTGTAACTATACATTTTG
130 CTTTTGTTTTTGCGCCAAAAACCGGAGAAAAACATTTGTAACTATACATTTTG
* * * *
7002354 TCACTATAATTAAAATATATAACTACAAACAAAACTTGTCATAAAAAAATTGAATCTCATTATT
1 TCACTATAATTAAAATATATAACTACAAACATAATTTGTCACAAAAAAATTGAATCTCAATATT
7002418 CATTGCGACA
Statistics
Matches: 219, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
180 7 0.03
181 146 0.67
182 65 0.30
183 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (182 bp):
TCACTATAATTAAAATATATAACTACAAACATAATTTGTCACAAAAAAATTGAATCTCAATATTT
GTTGTGATAATATTTTTCATAACAATAACTATAAGTTATAGTTACAAAACATGTCACTCTATAAC
TTTTGTTTTTGCGCCAAAAACCGGAGAAAAACATTTGTAACTATACATTTTG
Found at i:7002467 original size:181 final size:180
Alignment explanation
Indices: 7002092--7002475 Score: 493
Period size: 181 Copynumber: 2.1 Consensus size: 180
7002082 AACTATAAGT
* ** *
7002092 TATAGTTACAAAACATGTCACTCTGTAACTTTTGTTTTTGCGCCAAAAATTGGAGGAAAACATTT
1 TATAGTTACAAAACATGTCACTCTATAACTTTTGTTTTTGCGCCAAAAACCGGAGAAAAACATTT
* * * * * *
7002157 GTGACTATAGATTTTGTCACTACAATTAAAATTTATAACTACAAACATAATTTGTCACGAAAAAA
66 GTAACTATACATTTTGTCACTACAATTAAAATATATAACTACAAACAAAACTTGTCACAAAAAAA
** * * * **
7002222 TTGAATCTCAATATTTGTTGTGATAATTTTTCAGTAACAATAATTATAAGT
131 TTGAATCTCAATATTCATTGCGACAATTGTTCAGT-ACAATAATTATAACA
* *
7002273 TATAGTTACAAAACATGTTACTCTATAACTTTTGTTTTTGCGCCAAAAACCGGAGAAAAAGATTT
1 TATAGTTACAAAACATGTCACTCTATAACTTTTGTTTTTGCGCCAAAAACCGGAGAAAAACATTT
* *
7002338 GTAACTATACATTTTGTCACTATAATTAAAATATATAACTACAAACAAAACTTGTCATAAAAAAA
66 GTAACTATACATTTTGTCACTACAATTAAAATATATAACTACAAACAAAACTTGTCACAAAAAAA
* *
7002403 TTGAATCTCATTATTCATTGCGACAATTGTTCTTGT-C-ATAATTACTAAACA
131 TTGAATCTCAATATTCATTGCGACAATTGTTC-AGTACAATAATTA-T-AACA
* *
7002454 TATAGTCACAAAACTTGTCACT
1 TATAGTTACAAAACATGTCACT
7002476 ATATCATTTT
Statistics
Matches: 174, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
179 7 0.04
180 2 0.01
181 163 0.94
182 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.36
Consensus pattern (180 bp):
TATAGTTACAAAACATGTCACTCTATAACTTTTGTTTTTGCGCCAAAAACCGGAGAAAAACATTT
GTAACTATACATTTTGTCACTACAATTAAAATATATAACTACAAACAAAACTTGTCACAAAAAAA
TTGAATCTCAATATTCATTGCGACAATTGTTCAGTACAATAATTATAACA
Found at i:7011737 original size:2 final size:2
Alignment explanation
Indices: 7011732--7011756 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7011722 AAAATTTAAA
7011732 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7011757 CACTACTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7018650 original size:7 final size:6
Alignment explanation
Indices: 7018634--7018778 Score: 58
Period size: 7 Copynumber: 22.5 Consensus size: 6
7018624 ATCCCGGTTT
* * *
7018634 TTATTAA TTATCTA TTATTA TTAATA TTATTA CTAATTA TTAATTA CTA-TA
1 TTATT-A TTAT-TA TTATTA TTATTA TTATTA -TTATTA TT-ATTA TTATTA
** * * * * *
7018685 TTACGA TTAATTG TTTTTCA TTCTTA TTATCA TTAATTA TTACTA TTTATTA
1 TTATTA TT-ATTA TTATT-A TTATTA TTATTA TT-ATTA TTATTA -TTATTA
* * * *
7018737 TTATTTA CTATTA CTAATTA TTAATA TTATAA TTAATTA TTA
1 TTA-TTA TTATTA -TTATTA TTATTA TTATTA TT-ATTA TTA
7018779 AATATTAAAA
Statistics
Matches: 101, Mismatches: 26, Indels: 23
0.67 0.17 0.15
Matches are distributed among these distances:
5 4 0.04
6 46 0.46
7 50 0.50
8 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.56
Consensus pattern (6 bp):
TTATTA
Found at i:7018654 original size:3 final size:3
Alignment explanation
Indices: 7018634--7018778 Score: 58
Period size: 3 Copynumber: 45.0 Consensus size: 3
7018624 ATCCCGGTTT
* * *
7018634 TTA TTAA TTA TCTA TTA TTA TTA ATA TTA TTA CTAA TTA TTAA TTA CTA
1 TTA TT-A TTA T-TA TTA TTA TTA TTA TTA TTA -TTA TTA TT-A TTA TTA
** * * * * *
7018683 -TA TTA CGA TTAA TTG TTT TTCA TTC TTA TTA TCA TTAA TTA TTA CTA
1 TTA TTA TTA TT-A TTA TTA TT-A TTA TTA TTA TTA TT-A TTA TTA TTA
* * * *
7018730 TTTA TTA TTA TTTA CTA TTA CTAA TTA TTA ATA TTA TAA TTAA TTA TTA
1 -TTA TTA TTA -TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA
7018779 AATATTAAAA
Statistics
Matches: 104, Mismatches: 26, Indels: 24
0.68 0.17 0.16
Matches are distributed among these distances:
2 2 0.02
3 73 0.70
4 29 0.28
ACGTcount: A:0.36, C:0.07, G:0.01, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:7018662 original size:19 final size:19
Alignment explanation
Indices: 7018650--7018785 Score: 60
Period size: 19 Copynumber: 6.7 Consensus size: 19
7018640 ATTATCTATT
7018650 ATTATTAATATTATTACTA
1 ATTATTAATATTATTACTA
*
7018669 ATTATTAATTACTATATTAC-G
1 ATTATTAA-TA-T-TATTACTA
** * *
7018690 ATTAATTGTTTTTCATT-CTT
1 ATT-ATTAATATT-ATTACTA
* *
7018710 ATTATCATTAATTATTACTA
1 ATTATTAAT-ATTATTACTA
* *
7018730 TTTATTATTATTTACTATTACTA
1 ---ATTATTA-ATATTATTACTA
* *
7018753 ATTATTAATATTATAATTA
1 ATTATTAATATTATTACTA
7018772 ATTATTAAATATTA
1 ATTATT-AATATTA
7018786 AAAATCAGAC
Statistics
Matches: 89, Mismatches: 15, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
19 31 0.35
20 27 0.30
21 5 0.06
22 9 0.10
23 15 0.17
24 2 0.02
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.54
Consensus pattern (19 bp):
ATTATTAATATTATTACTA
Found at i:7018672 original size:22 final size:22
Alignment explanation
Indices: 7018647--7018688 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7018637 TTAATTATCT
7018647 ATTATT-ATTAATATTATTACTA
1 ATTATTAATTAATA-TATTACTA
*
7018669 ATTATTAATTACTATATTAC
1 ATTATTAATTAATATATTAC
7018689 GATTAATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTATTAATTAATATATTACTA
Found at i:7018748 original size:23 final size:23
Alignment explanation
Indices: 7018708--7018765 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
7018698 TTTTTCATTC
* * *
7018708 TTATTATCATTAATTATTACTAT
1 TTATTATTATTAACTATTACTAA
*
7018731 TTATTATTATTTACTATTACTAA
1 TTATTATTATTAACTATTACTAA
*
7018754 TTATTAATATTA
1 TTATTATTATTA
7018766 TAATTAATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TTATTATTATTAACTATTACTAA
Found at i:7020076 original size:11 final size:11
Alignment explanation
Indices: 7020062--7020264 Score: 61
Period size: 11 Copynumber: 18.2 Consensus size: 11
7020052 ATTATTATTA
*
7020062 TTATATTTTAC
1 TTATATTTTAT
7020073 TTAT-TTTTAT
1 TTATATTTTAT
*
7020083 TTTTACTTTT-T
1 TTATA-TTTTAT
*
7020094 TTACATTTTAT
1 TTATATTTTAT
**
7020105 TTAT-TTTTCC
1 TTATATTTTAT
7020115 TT-TATTTTAT
1 TTATATTTTAT
*
7020125 TTTTATTTTTAT
1 TTATA-TTTTAT
*
7020137 TTTTATTCCTTAT
1 TTATATT--TTAT
7020150 CTT-TATCTTT-T
1 -TTATAT-TTTAT
*
7020161 TTATCTTCTTTAT
1 TTAT-AT-TTTAT
*
7020174 ATT-TGTTTTAT
1 -TTATATTTTAT
*
7020185 TTATTTATTTAT
1 TTATAT-TTTAT
*
7020197 TTGTA-TTTAT
1 TTATATTTTAT
7020207 TTAT-TTATTAT
1 TTATATT-TTAT
* *
7020218 GTATATATTA-
1 TTATATTTTAT
7020228 TTAT-TTTTAAT
1 TTATATTTT-AT
7020239 ATTATTATTTT-T
1 -TTA-TATTTTAT
*
7020251 TCTTTATTTTAT
1 T-TATATTTTAT
7020263 TT
1 TT
7020265 TTTATTTACT
Statistics
Matches: 146, Mismatches: 20, Indels: 52
0.67 0.09 0.24
Matches are distributed among these distances:
9 4 0.03
10 41 0.28
11 43 0.29
12 39 0.27
13 10 0.07
14 9 0.06
ACGTcount: A:0.20, C:0.06, G:0.01, T:0.72
Consensus pattern (11 bp):
TTATATTTTAT
Found at i:7020076 original size:17 final size:17
Alignment explanation
Indices: 7020056--7020112 Score: 73
Period size: 16 Copynumber: 3.5 Consensus size: 17
7020046 GTTATTATTA
*
7020056 TTATTATTATATTTTAC
1 TTATTTTTATATTTTAC
7020073 TTATTTTTAT-TTTTAC
1 TTATTTTTATATTTTAC
* *
7020089 TT-TTTTTACATTTTAT
1 TTATTTTTATATTTTAC
7020105 TTATTTTT
1 TTATTTTT
7020113 CCTTTATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 6 0.17
16 15 0.43
17 14 0.40
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATTTTTATATTTTAC
Found at i:7020083 original size:32 final size:32
Alignment explanation
Indices: 7020047--7020112 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
7020037 TTATTTACTG
*
7020047 TTATTATTA-TTATTATTATATTTTACTTATTT
1 TTATTATTACTT-TTATTACATTTTACTTATTT
* * *
7020079 TTATTTTTACTTTTTTTACATTTTATTTATTT
1 TTATTATTACTTTTATTACATTTTACTTATTT
7020111 TT
1 TT
7020113 CCTTTATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 27 0.93
33 2 0.07
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (32 bp):
TTATTATTACTTTTATTACATTTTACTTATTT
Found at i:7020092 original size:7 final size:6
Alignment explanation
Indices: 7020073--7020308 Score: 69
Period size: 6 Copynumber: 38.2 Consensus size: 6
7020063 TATATTTTAC
* ** *
7020073 TTATTT TTATTT TTACTT TT-TTT ACA-TT TTATTT ATTTTTCCT TTA-TT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT -TTATT--T TTATTT
* * * * *
7020121 TTATTT TTATTT TTATTT TTATTCC TTATCT TTATCT TT-TTT ATCTTCT
1 TTATTT TTATTT TTATTT TTATT-T TTATTT TTATTT TTATTT TTATT-T
* * * *
7020170 TTATAT TT-GTT TTATTT ATT-TAT TTATTT GTATTTAT TTATTT ATTATGTAT
1 TTATTT TTATTT TTATTT -TTATTT TTATTT TTA-TT-T TTATTT -TTAT-T-T
* * * *
7020222 ATATTA TTATTT TTAATATT ATTATTT TT-TCT TTA-TT TTATTT TT-TAT
1 TTATTT TTATTT TT-AT-TT -TTATTT TTATTT TTATTT TTATTT TTATTT
* **
7020270 TTACTTT ATTCATTT TTATTA TTACCT TT-TTT TTATTT T
1 TTA-TTT -TT-ATTT TTATTT TTATTT TTATTT TTATTT T
7020309 CTGTTTCTTT
Statistics
Matches: 166, Mismatches: 37, Indels: 54
0.65 0.14 0.21
Matches are distributed among these distances:
5 32 0.19
6 80 0.48
7 31 0.19
8 18 0.11
9 5 0.03
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.73
Consensus pattern (6 bp):
TTATTT
Found at i:7020146 original size:31 final size:33
Alignment explanation
Indices: 7020099--7020160 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
7020089 TTTTTTTACA
*
7020099 TTTTATTTATTTTTCCTTTAT-TTTAT-TTTTAT
1 TTTTATTTATTATTCC-TTATCTTTATCTTTTAT
7020131 TTTTATTT-TTATTCCTTATCTTTATCTTTT
1 TTTTATTTATTATTCCTTATCTTTATCTTTT
7020161 TTATCTTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 4 0.15
31 11 0.41
32 12 0.44
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.76
Consensus pattern (33 bp):
TTTTATTTATTATTCCTTATCTTTATCTTTTAT
Found at i:7020189 original size:4 final size:4
Alignment explanation
Indices: 7020180--7020284 Score: 71
Period size: 4 Copynumber: 26.8 Consensus size: 4
7020170 TTATATTTGT
* *
7020180 TTTA TTTA TTTA TTTA TTTGTA TTTA TTTA TTTA -TTA TGTA TATA -TTA
1 TTTA TTTA TTTA TTTA -TT-TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
7020228 -TTA TTT- TTAA TATTA -TTA TTT- TTTC TTTA TTTTA TTT- TTTA TTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA
*
7020273 CTTTA TTCA TTT
1 -TTTA TTTA TTT
7020285 TTATTATTAC
Statistics
Matches: 82, Mismatches: 8, Indels: 22
0.73 0.07 0.20
Matches are distributed among these distances:
3 19 0.23
4 47 0.57
5 14 0.17
6 2 0.02
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:7020205 original size:14 final size:14
Alignment explanation
Indices: 7020186--7020212 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7020176 TTGTTTTATT
7020186 TATTTATTTATTTG
1 TATTTATTTATTTG
7020200 TATTTATTTATTT
1 TATTTATTTATTT
7020213 ATTATGTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (14 bp):
TATTTATTTATTTG
Found at i:7020265 original size:15 final size:15
Alignment explanation
Indices: 7020036--7020279 Score: 84
Period size: 15 Copynumber: 16.0 Consensus size: 15
7020026 CTTATTACTC
*
7020036 TTTATTTACTGTTATT
1 TTTATTTA-TTTTATT
*
7020052 ATTA-TTATTATTATAT
1 TTTATTTATT-TTAT-T
*
7020068 TTTACTTATTTTTATT
1 TTTATTTA-TTTTATT
*
7020084 TTTACTTT-TTTTACAT
1 TTTA-TTTATTTTA-TT
7020100 TTTATTTA---T-TT
1 TTTATTTATTTTATT
**
7020111 TTCCTTTATTTTATT
1 TTTATTTATTTTATT
7020126 TTTA--T-TTTTATT
1 TTTATTTATTTTATT
*
7020138 TTTATTCCTTATCTTTATC
1 TTTA-T--TTAT-TTTATT
* *
7020157 TTT-TTTATCTTCTT
1 TTTATTTATTTTATT
* *
7020171 TATATTTGTTTTATTT
1 TTTATTTATTTTA-TT
7020187 ATTTATTTATTTGTA--
1 -TTTATTTATTT-TATT
7020202 TTTATTTA-TTTATT
1 TTTATTTATTTTATT
* *
7020216 ATGTATATATTATTATT
1 -TTTATTTATT-TTATT
*
7020233 TTTA-ATATTATTATTT
1 TTTATTTATT-TTA-TT
*
7020249 TTTCTTTATTTTATTT
1 TTTATTTATTTTA-TT
*
7020265 TTTATTTACTTTATT
1 TTTATTTATTTTATT
7020280 CATTTTTATT
Statistics
Matches: 172, Mismatches: 27, Indels: 59
0.67 0.10 0.23
Matches are distributed among these distances:
11 7 0.04
12 13 0.08
13 4 0.02
14 15 0.09
15 46 0.27
16 45 0.26
17 29 0.17
18 5 0.03
19 8 0.05
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.72
Consensus pattern (15 bp):
TTTATTTATTTTATT
Found at i:7020269 original size:26 final size:26
Alignment explanation
Indices: 7020047--7020270 Score: 72
Period size: 26 Copynumber: 8.2 Consensus size: 26
7020037 TTATTTACTG
* *
7020047 TTATTATTATTATTATTATATTTTACTTAT
1 TTATTATT-TT-TTCTT-TATTTTA-TTTT
* **
7020077 TT-TTATTTTTACTTT-TTTTACATT
1 TTATTATTTTTTCTTTATTTTATTTT
*
7020101 TTATTTATTTTTCCTTTATTTTA-TTT
1 TTA-TTATTTTTTCTTTATTTTATTTT
* *
7020127 TTATT-TTTATT-TTTATTCCTTA-TCT
1 TTATTATTTTTTCTTTATT--TTATTTT
* *
7020152 TTATCT-TTTTTATCTTCT-TTATATTTG
1 TTAT-TATTTTT-TCTT-TATTTTATTTT
*
7020179 TT-TTATTTATTTATTTATTTGTATTTAT
1 TTATTATTT-TTTCTTTATTT-TATTT-T
* *
7020207 TTATTTATTATGTATATATTATTATT-TTTAAT
1 TTA-TTATT-T-TTTCT-TTATT-TTATTT--T
7020239 ATTATTATTTTTTCTTTATTTTATTTT
1 -TTATTATTTTTTCTTTATTTTATTTT
7020266 TTATT
1 TTATT
7020271 TACTTTATTC
Statistics
Matches: 150, Mismatches: 21, Indels: 50
0.68 0.10 0.23
Matches are distributed among these distances:
23 6 0.04
24 7 0.05
25 18 0.12
26 39 0.26
27 20 0.13
28 10 0.07
29 14 0.09
30 10 0.07
31 9 0.06
32 13 0.09
33 4 0.03
ACGTcount: A:0.21, C:0.05, G:0.01, T:0.72
Consensus pattern (26 bp):
TTATTATTTTTTCTTTATTTTATTTT
Found at i:7031720 original size:43 final size:43
Alignment explanation
Indices: 7031672--7031795 Score: 167
Period size: 43 Copynumber: 2.9 Consensus size: 43
7031662 AGAAAGGGCC
* *
7031672 ATCCACGATTTCAAATCCACGACGGAGGATATCGTGCCCATAA
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCCACAA
* * *
7031715 ATCCACGATTTTAACTCCAAGACGGAGGATATCGTGCTCACAA
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCCACAA
* * * *
7031758 ATCCACGATTTCAACTTCACGATGAAGGATATCATGCC
1 ATCCACGATTTCAACTCCACGACGGAGGATATCGTGCC
7031796 AACTCTAGCA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATCCACGATTTCAACTCCACGACGGAGGATATCGTGCCCACAA
Found at i:7032081 original size:41 final size:44
Alignment explanation
Indices: 7032013--7032126 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 44
7032003 GGCCATCCAC
* * * **
7032013 GATTTTAACTCCACGACGGAGGATATCGTGCCCACA-TTAAC-T
1 GATTTCAACTTCACGACGAAGGATATCGTGCCCACACGCAACAT
*
7032055 -ATTTCAACTTCACGACGAAGGATATCGTGCTCACACGCAACATT
1 GATTTCAACTTCACGACGAAGGATATCGTGCCCACACGCAACA-T
*
7032099 GGATTTCAACTTCACAACGAAGGATATC
1 -GATTTCAACTTCACGACGAAGGATATC
7032127 CAATTCAAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
41 31 0.52
42 3 0.05
44 1 0.02
46 25 0.42
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (44 bp):
GATTTCAACTTCACGACGAAGGATATCGTGCCCACACGCAACAT
Found at i:7034101 original size:20 final size:20
Alignment explanation
Indices: 7034042--7034190 Score: 61
Period size: 23 Copynumber: 6.8 Consensus size: 20
7034032 GTTATTATTA
* *
7034042 TTATTATTATTCTATTTTAC-
1 TTATT-TTATTTTATTTTTCT
7034062 TTATTTCTATTTTTACTTTTT-T
1 TTATTT-TA-TTTTA-TTTTTCT
*
7034084 TACATTTTA-TTTATTTTTCCT
1 T-TATTTTATTTTATTTTT-CT
*
7034105 TTATTTTATTTTATTTTTATTCC
1 TTATTTTATTTTA--TTT-TTCT
*
7034128 TTATCTTTATCTTTTTTATCTTCT
1 TTAT-TTTAT-TTTATT-T-TTCT
* *
7034152 TTATATTTGTTTTATTTATTTAT
1 TTAT-TTTATTTTA-TT-TTTCT
7034175 TTATTTGTATTTTATT
1 TTATTT-TATTTTATT
7034191 CTAATTTTTA
Statistics
Matches: 100, Mismatches: 13, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
19 6 0.06
20 17 0.17
21 10 0.10
22 11 0.11
23 30 0.30
24 23 0.23
25 3 0.03
ACGTcount: A:0.18, C:0.09, G:0.01, T:0.72
Consensus pattern (20 bp):
TTATTTTATTTTATTTTTCT
Found at i:7034124 original size:6 final size:5
Alignment explanation
Indices: 7034036--7034190 Score: 58
Period size: 6 Copynumber: 30.0 Consensus size: 5
7034026 TTTACTGTTA
* *
7034036 TTATT ATTATT ATTATT CTATT TTA-C TTATT TCTATTT TTACTT TT-TT
1 TTATT -TTATT -TTATT TTATT TTATT TTATT T-TA-TT TTA-TT TTATT
*
7034084 TACATT TTA-T TTATT TT-TCCT TTATT TTATT TTATTT TTATT CCTTATCT
1 T-TATT TTATT TTATT TTAT--T TTATT TTATT TTA-TT TTATT --TTAT-T
* * * *
7034134 TTATC TT-TT TTATC TT-CT TTATAT TTGTT TTA-T TTA-T TTA-T TTATT
1 TTATT TTATT TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TTATT
7034180 TGTATT TTATT
1 T-TATT TTATT
7034191 CTAATTTTTA
Statistics
Matches: 116, Mismatches: 15, Indels: 37
0.69 0.09 0.22
Matches are distributed among these distances:
4 28 0.24
5 36 0.31
6 43 0.37
7 8 0.07
8 1 0.01
ACGTcount: A:0.19, C:0.08, G:0.01, T:0.72
Consensus pattern (5 bp):
TTATT
Found at i:7034136 original size:24 final size:23
Alignment explanation
Indices: 7034087--7034190 Score: 68
Period size: 24 Copynumber: 4.3 Consensus size: 23
7034077 CTTTTTTTAC
*
7034087 ATTTTATTTATTTTTCCTTTATTTT
1 ATTTTATTT-TTATTCC-TTATTTT
7034112 ATTTTATTTTTATTCCTTATCTTT
1 ATTTTATTTTTATTCCTTAT-TTT
* * *
7034136 ATCTTT-TTTATCTTCTTTATATTT
1 AT-TTTATTTTTATTCCTTAT-TTT
* * **
7034160 GTTTTATTTAT-TTATTTATTTGT
1 ATTTTATTTTTATTCCTTATTT-T
7034183 ATTTTATT
1 ATTTTATT
7034191 CTAATTTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
22 2 0.03
23 22 0.33
24 31 0.46
25 12 0.18
ACGTcount: A:0.17, C:0.08, G:0.02, T:0.73
Consensus pattern (23 bp):
ATTTTATTTTTATTCCTTATTTT
Found at i:7034237 original size:35 final size:35
Alignment explanation
Indices: 7034167--7034237 Score: 81
Period size: 35 Copynumber: 2.0 Consensus size: 35
7034157 TTTGTTTTAT
* * *
7034167 TTATTTATTTATTTGTATTTTATTCTAATTTTTAA
1 TTATTTATTTATTTGTATTATATTATAATTATTAA
* *
7034202 TTATTTGTTTATTATGTA-TATATTATTATTATTAA
1 TTATTTATTTATT-TGTATTATATTATAATTATTAA
7034237 T
1 T
7034238 ATTATTCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 26 0.87
36 4 0.13
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (35 bp):
TTATTTATTTATTTGTATTATATTATAATTATTAA
Found at i:7041046 original size:16 final size:16
Alignment explanation
Indices: 7041008--7041040 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7040998 TACATTCAAA
7041008 ACATAGAAACTAAGTT
1 ACATAGAAACTAAGTT
7041024 ACATAGAAACTAAGTT
1 ACATAGAAACTAAGTT
7041040 A
1 A
7041041 AGTAGATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (16 bp):
ACATAGAAACTAAGTT
Found at i:7043013 original size:881 final size:871
Alignment explanation
Indices: 7040891--7043325 Score: 3874
Period size: 881 Copynumber: 2.8 Consensus size: 871
7040881 ATGAATTGAA
* * * *
7040891 TTCATCAAATGTTCGTTAT-CTCTCTTAAGCGACCCCTTATAAGTTTCCTTGTTGTTGTTTTCAC
1 TTCACCAAATGTTCCTTATGCTCTCCTAAGCGACCCCATATAAGTTTCCTTGTTGTTGTTTTCAC
*
7040955 CATTTAGCTCAAAATAGCTCCCATAGTTGTGGCCAAATGTACCTACATTCAAAACATAGAAACTA
66 CATTTAGCTCAAAATAGCTCCCATAGTTGTGGCCGAATGTACCTACATTCAAAACATAG-----A
7041020 AGTTACATAGAAACTAAGTTAAGTAGATGAACTATTATATAA-TAATAATGATGTACATATTATA
126 A---AC-T----A-T--GTTAAGTAGATGAACTATTATA-AAGTAATAATGATGTACATATTATA
* * *
7041084 AATATGAGGACTATAGAATATAATGATAACTTATTCCTCATATAATAATGAATGAGTTATTAGCA
179 AATATGTGGAGTATAGAATATAATGATAACTTATGCCTCATATAATAATGAATGAGTTATTAGCA
7041149 TTATAGCTATAGATATAAAATATATATTTGAATATATCTATGTTATAATAACTGAAATATGAATC
244 TTATAGCTATAGATATAAAATATATATTTGAATATATCTATGTTATAATAACTGAAATATGAATC
* * *
7041214 ATTGTGTAGAAAAATAGAAAGTTTCTCCCCTTGAATCTTATAAAAGGTTGAATATGCAAGGATAA
309 ATTGTGTCGAAAAATAGAAAGTTTCTCCCCTTGAATCTTATAAAAGGTTGGAGATGCAAGGATAA
* * * **
7041279 ACATAAAGTTGAATCAGATAACATCAAGGTATTAACTAACAAAGAAGTTGTTTTATAATACAAAT
374 ACATAATGTTGAATCGGATAACATCAAGGAATTAACTAACAAAGAAGTTGTTTTATAATATGAAT
* * * *
7041344 GAGATGAGTACAAATGAAAGTAGCCTCTCAATTTATAGGAAATGAGAGGGATTAGCCGAATAGGC
439 GAGATGAGTACAAAAGAAAGCAGCCTCTCAATTTATAGGAAATGAGAGGGCTTGGCCGAATAGGC
*
7041409 ACCTAATGATTCGACTAAGTACATAACTTTAATGAAAGTACATAATTAATTAAGTGAATGAATAT
504 ACCTAATGATTCGACTAAGTACATAACTCTAATGAAAGTACATAATTAATTAAGTGAATGAATAT
*
7041474 GTCCATAAGCTTGGTGATGGTTCGACTAATCCTTCATAAAGAAGCATGATGTTTCGGCCATGCAT
569 GTCCATAGGCTTGGTGATGGTTCGACTAATCCTTCATAAAGAAGCATGATGTTTCGGCCATGCAT
* *
7041539 GAATCAACCTCTCTTTAGCCGAATGGTGAATGTTCTGGCAGCTCCATATGGAAAGACACCTCTTG
634 GAATCAACCTCTCTTTAGCCGAACGGTGAATGTTCTGACAGCTCCATATGGAAAGACACCTCTTG
*
7041604 GAATGACAACTATTCACGAAAAGGTATGATTTCACAAAAATTGACTTAGGACTTATTTAAAGTGT
699 GAATGACAACTATTCACGAAAAGGTACGATTTCACAAAAATTGACTTAGGACTTATTTAAAGTGT
7041669 CCTGAGTGGTGAAGATGATGGTGCAGTTCCCAAGCTGAATTGAAGTCATCATCTAGCTCGAATAT
764 CCTGAGTGGTGAAGATGATGGTGCAGTTCCCAAGCTGAATTGAAGTCATCATCTAGCTCGAATAT
7041734 TTAGCTCAACCCAACTATGAGCTCACTGGTCTTCGAATAACTT
829 TTAGCTCAACCCAACTATGAGCTCACTGGTCTTCGAATAACTT
7041777 TTCACCAAATGTTCCTTATGCTCTCCTAAGCGACCCCATATAAGTTTCCTTGTTGTTGTTTTCAC
1 TTCACCAAATGTTCCTTATGCTCTCCTAAGCGACCCCATATAAGTTTCCTTGTTGTTGTTTTCAC
*
7041842 CATTTAGCTCAAAATAGCTCCCATAGTTGTGGCCGAATGTACCTACATTGAAAACATAGAAACTA
66 CATTTAGCTCAAAATAGCTCCCATAGTTGTGGCCGAATGTACCTACATTCAAAACATAGAAACTA
* * *
7041907 AGTTAAGTAGATGAACTATTATAAAGTAATAATGATGTCCATATTACAAATATGTGGAGTATAGA
131 TGTTAAGTAGATGAACTATTATAAAGTAATAATGATGTACATATTATAAATATGTGGAGTATAGA
*
7041972 ATATAATGATAACATATGCCTCATATAATAATGAATGAGTTATTAGCATTATAGCTATAGATATA
196 ATATAATGATAACTTATGCCTCATATAATAATGAATGAGTTATTAGCATTATAGCTATAGATATA
7042037 AAATATATATTTGAATATATCTATGTTATAATAACTGAAATATGAATCATTGTG-CAGAAAAATA
261 AAATATATATTTGAATATATCTATGTTATAATAACTGAAATATGAATCATTGTGTC-GAAAAATA
*
7042101 GAATGTTT-TCCCCCTTGAATCTTATAAAAGGTTGGAGATGCAAGGATAAACATAATGTTGAATC
325 GAAAGTTTCT-CCCCTTGAATCTTATAAAAGGTTGGAGATGCAAGGATAAACATAATGTTGAATC
* *
7042165 GGATAACATCAAGGAATTAGCTAACAAAGAAGTTGTTTTATAATATGAATGAGATGAGTACAAAG
389 GGATAACATCAAGGAATTAACTAACAAAGAAGTTGTTTTATAATATGAATGAGATGAGTACAAAA
* * ** * **
7042230 GAAAGCAACCTCTCAATTTATAGTAAATGAGATTGCTTGGCCGAATAGGTATTTAATGATTCGAC
454 GAAAGCAGCCTCTCAATTTATAGGAAATGAGAGGGCTTGGCCGAATAGGCACCTAATGATTCGAC
**
7042295 TAAGTACATTGCTCTAATGAAAGTACATAATTAATTAAGTGAATGAATATGTCCATAGGCTTGGT
519 TAAGTACATAACTCTAATGAAAGTACATAATTAATTAAGTGAATGAATATGTCCATAGGCTTGGT
* *
7042360 GATGGTTCGAGTAATCCTTCATAAAGAAGAATGATGTTTCGGCCATGCATGAATCAACCTCTCTT
584 GATGGTTCGACTAATCCTTCATAAAGAAGCATGATGTTTCGGCCATGCATGAATCAACCTCTCTT
* * *
7042425 TCGCCGAACGGTGAATGTTCTGACAGCTCCTTGTGGAAAGACACCTCTTGGAATGACAACTATTC
649 TAGCCGAACGGTGAATGTTCTGACAGCTCCATATGGAAAGACACCTCTTGGAATGACAACTATTC
7042490 ACGAAAAGGTACGATTTCACAAAAATTGACTTAGGACTTATTTAAAGTGTCCTGAGTGGTGAAGA
714 ACGAAAAGGTACGATTTCACAAAAATTGACTTAGGACTTATTTAAAGTGTCCTGAGTGGTGAAGA
* * *
7042555 TGATGGTGCAGTTCCCAGGCTGAATTGAAGTGAATTGAAGTCATCTTCTAGCTCGAATCTTTAGC
779 TGATGGTGCAGTT-CC---C--AA--G--CTGAATTGAAGTCATCATCTAGCTCGAATATTTAGC
* * *
7042620 TCAACCCAACTATGTGCTCACTTGTC-TCTGTATAACTT
834 TCAACCCAACTATGAGCTCACTGGTCTTC-GAATAACTT
* * *
7042658 TTCACCAAATATTCCTTATGCTCTCCTAAGTGACCCCATATAAGTTTCCTTGTTGTTGTTTTCCC
1 TTCACCAAATGTTCCTTATGCTCTCCTAAGCGACCCCATATAAGTTTCCTTGTTGTTGTTTTCAC
* *
7042723 CATTTAGCTCAAAATAGTTCCCATAGTTGTGGCCGAATTTACCTACATTCAAAACATAGAAACTA
66 CATTTAGCTCAAAATAGCTCCCATAGTTGTGGCCGAATGTACCTACATTCAAAACATAGAAACTA
*
7042788 TGTTAAGTAGATGAACTATTATAAAGTAATAATGATATACATATTATAAATATGTGGAGTATAGA
131 TGTTAAGTAGATGAACTATTATAAAGTAATAATGATGTACATATTATAAATATGTGGAGTATAGA
*
7042853 ATATAATGATAACTTATGCCTCATATAATAATGAATGAGTTATTAGCATTATAGTTATAGATATA
196 ATATAATGATAACTTATGCCTCATATAATAATGAATGAGTTATTAGCATTATAGCTATAGATATA
7042918 AAATATATATTTGAATATATCTATGTTATAATAACTGAAATATGAATCATTGTGTCGAAAAATAG
261 AAATATATATTTGAATATATCTATGTTATAATAACTGAAATATGAATCATTGTGTCGAAAAATAG
*
7042983 AAAGTTTCTCCCCTTGAATCTTATAAAAGGTTGGAGATGCAAGGATAAACAAAATGTTGAATCGG
326 AAAGTTTCTCCCCTTGAATCTTATAAAAGGTTGGAGATGCAAGGATAAACATAATGTTGAATCGG
* *
7043048 ATAACATCTA-GAGATTAACTAACAAAAAAGTTGTTTTATAATATGAATGAGATGAGTACAAAAG
391 ATAACATCAAGGA-ATTAACTAACAAAGAAGTTGTTTTATAATATGAATGAGATGAGTACAAAAG
* * *
7043112 AAAGCAGCCGCTGAATTTATAGGAAATGAGAGGGCTTGGCCGAATAGGCACCTAATGATTCGGCT
455 AAAGCAGCCTCTCAATTTATAGGAAATGAGAGGGCTTGGCCGAATAGGCACCTAATGATTCGACT
7043177 AAGTACATAACTCTAATGAAAGTACATAATTAATTAAGTGAATGAATATGTCCATAGGCTTGGTG
520 AAGTACATAACTCTAATGAAAGTACATAATTAATTAAGTGAATGAATATGTCCATAGGCTTGGTG
* * * * * *
7043242 ATGGTTTGACTAATCCTTCATAAGGAAGCATGATGTTTCGACCATGCAAGATTCAACCTCTCCTT
585 ATGGTTCGACTAATCCTTCATAAAGAAGCATGATGTTTCGGCCATGCATGAATCAACCTCTCTTT
* *
7043307 ATCCGAATGGTGATATGTT
650 AGCCGAACGGTGA-ATGTT
7043326 TGTTCATCTA
Statistics
Matches: 1437, Mismatches: 93, Indels: 42
0.91 0.06 0.03
Matches are distributed among these distances:
870 3 0.00
871 615 0.43
872 2 0.00
874 1 0.00
875 1 0.00
877 2 0.00
878 1 0.00
879 3 0.00
880 4 0.00
881 679 0.47
882 9 0.01
886 17 0.01
887 100 0.07
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (871 bp):
TTCACCAAATGTTCCTTATGCTCTCCTAAGCGACCCCATATAAGTTTCCTTGTTGTTGTTTTCAC
CATTTAGCTCAAAATAGCTCCCATAGTTGTGGCCGAATGTACCTACATTCAAAACATAGAAACTA
TGTTAAGTAGATGAACTATTATAAAGTAATAATGATGTACATATTATAAATATGTGGAGTATAGA
ATATAATGATAACTTATGCCTCATATAATAATGAATGAGTTATTAGCATTATAGCTATAGATATA
AAATATATATTTGAATATATCTATGTTATAATAACTGAAATATGAATCATTGTGTCGAAAAATAG
AAAGTTTCTCCCCTTGAATCTTATAAAAGGTTGGAGATGCAAGGATAAACATAATGTTGAATCGG
ATAACATCAAGGAATTAACTAACAAAGAAGTTGTTTTATAATATGAATGAGATGAGTACAAAAGA
AAGCAGCCTCTCAATTTATAGGAAATGAGAGGGCTTGGCCGAATAGGCACCTAATGATTCGACTA
AGTACATAACTCTAATGAAAGTACATAATTAATTAAGTGAATGAATATGTCCATAGGCTTGGTGA
TGGTTCGACTAATCCTTCATAAAGAAGCATGATGTTTCGGCCATGCATGAATCAACCTCTCTTTA
GCCGAACGGTGAATGTTCTGACAGCTCCATATGGAAAGACACCTCTTGGAATGACAACTATTCAC
GAAAAGGTACGATTTCACAAAAATTGACTTAGGACTTATTTAAAGTGTCCTGAGTGGTGAAGATG
ATGGTGCAGTTCCCAAGCTGAATTGAAGTCATCATCTAGCTCGAATATTTAGCTCAACCCAACTA
TGAGCTCACTGGTCTTCGAATAACTT
Found at i:7044573 original size:50 final size:51
Alignment explanation
Indices: 7044491--7044591 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 51
7044481 GCAAGAATCA
* *
7044491 ACCTCTCCTTAGCCGAATGGTGATATGTTTGTTCATCTAGGCGCCAAAGTC
1 ACCTCTCCTTAGCCGAATAGTGATATGCTTGTTCATCTAGGCGCCAAAGTC
* * * * *
7044542 ACCTC-CCTTGGCTGAATAGTGATCTGCTTGTTCATCTTGGTGCCAAAGTC
1 ACCTCTCCTTAGCCGAATAGTGATATGCTTGTTCATCTAGGCGCCAAAGTC
7044592 TTCATGTGCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 38 0.88
51 5 0.12
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.33
Consensus pattern (51 bp):
ACCTCTCCTTAGCCGAATAGTGATATGCTTGTTCATCTAGGCGCCAAAGTC
Found at i:7046948 original size:50 final size:51
Alignment explanation
Indices: 7046866--7046966 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 51
7046856 GCAAGAATCA
* *
7046866 ACCTCTCCTTAGCCGAATGGTGATATGTTTGTTCATCTAGGCGCCAAAGTC
1 ACCTCTCCTTAGCCGAATAGTGATATGCTTGTTCATCTAGGCGCCAAAGTC
* * * * *
7046917 ACCTC-CCTTGGCTGAATAGTGATCTGCTTGTTCATCTTGGTGCCAAAGTC
1 ACCTCTCCTTAGCCGAATAGTGATATGCTTGTTCATCTAGGCGCCAAAGTC
7046967 TTCATGTGCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 38 0.88
51 5 0.12
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.33
Consensus pattern (51 bp):
ACCTCTCCTTAGCCGAATAGTGATATGCTTGTTCATCTAGGCGCCAAAGTC
Found at i:7054006 original size:50 final size:51
Alignment explanation
Indices: 7053945--7054045 Score: 159
Period size: 50 Copynumber: 2.0 Consensus size: 51
7053935 GCATGAATAA
* * * *
7053945 ACCTCTCCTTGGCCTAATGGTGATATGTTTGTTCATCTTGGCACCAAAGTC
1 ACCTCTCCTTGGCCGAATAGTGATACGCTTGTTCATCTTGGCACCAAAGTC
7053996 ACCTC-CCTTGGCCGAATAGTGATACGCTTGTTCATCTTGGCACCAAAGTC
1 ACCTCTCCTTGGCCGAATAGTGATACGCTTGTTCATCTTGGCACCAAAGTC
7054046 TTCATGTGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 41 0.89
51 5 0.11
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.32
Consensus pattern (51 bp):
ACCTCTCCTTGGCCGAATAGTGATACGCTTGTTCATCTTGGCACCAAAGTC
Found at i:7057556 original size:50 final size:51
Alignment explanation
Indices: 7057490--7057590 Score: 150
Period size: 50 Copynumber: 2.0 Consensus size: 51
7057480 ACATGAATCA
* *
7057490 ACCTCTCCTTGACCGAATGGTGATATGTTTGTTTATCTTGGAGCCAAAGTC
1 ACCTCTCCTTGACCGAATGGTGATATGCTTGTTCATCTTGGAGCCAAAGTC
* * *
7057541 ACCTC-CCTTGTCCGAATGGTGATTTGCTTGTTCATCTTGGTGCCAAAGTC
1 ACCTCTCCTTGACCGAATGGTGATATGCTTGTTCATCTTGGAGCCAAAGTC
7057591 TTCATGTGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 40 0.89
51 5 0.11
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (51 bp):
ACCTCTCCTTGACCGAATGGTGATATGCTTGTTCATCTTGGAGCCAAAGTC
Found at i:7062250 original size:26 final size:26
Alignment explanation
Indices: 7062220--7062273 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
7062210 ACCGAAGTGC
*
7062220 TAATACACATAAGATCATGCCCTCCA
1 TAATACACATAAGATCATGCCCACCA
* *
7062246 TAATACACATAAGTTCGTGCCCACCA
1 TAATACACATAAGATCATGCCCACCA
7062272 TA
1 TA
7062274 TGCACTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.30, G:0.09, T:0.24
Consensus pattern (26 bp):
TAATACACATAAGATCATGCCCACCA
Found at i:7073019 original size:2 final size:2
Alignment explanation
Indices: 7073004--7073352 Score: 135
Period size: 2 Copynumber: 186.5 Consensus size: 2
7072994 CAGTGATTAT
* *
7073004 TA TA TA GTA T- TA TA TA T- TT TA CA TA T- TA TA T- TA TA T- TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7073042 TA TA GTA TA TA T- TA TA T- TA TT TA TG T- TA TA TA T- TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
** * *
7073081 GTA TA TA TA GGG TA T- TA TA TA GTA TA TA TA T- TA TA TGG TA TG
1 -TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA T-A TA TA
* * **
7073123 T- TA -A GTA T- TA CA -A TA T- TA TA TA TA T- TG TA T- TA CG TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7073159 TA TA -A TA -A TA GTA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7073199 TA T- TA TA GTG TG TA T- TA TA TA TA T- TA TA -A TA TA T- TA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
7073237 T- TA TA T- TA TA TA CA TA AA TT TA TA T- TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7073275 T- TA TA GTA TA GTA TA GTA TA TA TA TA TA T- TA TT TA T- TA TA
1 TA TA TA -TA TA -TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
*
7073315 -A TA TA TA GTA T- TA TT TA TA TA T- TA T- TA T- TA TCA TA TA T
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA T
7073353 TTATTACATT
Statistics
Matches: 264, Mismatches: 31, Indels: 104
0.66 0.08 0.26
Matches are distributed among these distances:
1 38 0.14
2 203 0.77
3 23 0.09
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7073036 original size:5 final size:5
Alignment explanation
Indices: 7073026--7073403 Score: 128
Period size: 5 Copynumber: 75.8 Consensus size: 5
7073016 TATATTTTAC
*
7073026 ATATT ATATT ATATT ATA-T AGTA-T ATATT ATATT AT-TT ATGTT ATA-T
1 ATATT ATATT ATATT ATATT A-TATT ATATT ATATT ATATT ATATT ATATT
* ** *
7073073 AT-TAT ATAGT ATA-T ATAGG GTATT ATA-T AGTATAT ATATT ATATGGT
1 ATAT-T ATATT ATATT ATATT ATATT ATATT A-TAT-T ATATT ATAT--T
* * * *
7073120 ATGTT AAGTATT ACA-- ATATT ATA-T ATATT GTATT ACGTA-T ATAATA
1 ATATT -A-TATT ATATT ATATT ATATT ATATT ATATT A--TATT AT-ATT
* *
7073166 ATAGT ATATT ATA-T ATATAT ATATAT ATATAT ATATT ATAGTGT GTATT
1 ATATT ATATT ATATT ATAT-T ATAT-T ATAT-T ATATT ATA-T-T ATATT
* * *
7073215 ATA-T ATATT ATAAT ATATT ATATT ATATT ATA-T ACA-T AAATTT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA-TT ATATT
* * *
7073263 ATA-T AT-TAT ATATT ATAGT ATAGT ATAGT ATA-T ATA-T ATATT AT-TT
1 ATATT ATAT-T ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
* *
7073309 ATTATA ATATAT AGTATT ATTTAT ATATT ATTATT ATCA-T ATATT -TATT
1 A-TATT ATAT-T A-TATT ATAT-T ATATT A-TATT AT-ATT ATATT ATATT
* *
7073358 ACATT AGTCTAT ATATGT -TA-T ATATT -TATT AT-TT AT-TT AT-TT
1 ATATT A-TAT-T ATAT-T ATATT ATATT ATATT ATATT ATATT ATATT
7073400 ATAT
1 ATAT
7073404 ATTTAATTAT
Statistics
Matches: 292, Mismatches: 34, Indels: 94
0.70 0.08 0.22
Matches are distributed among these distances:
3 3 0.01
4 73 0.25
5 146 0.50
6 51 0.17
7 19 0.07
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (5 bp):
ATATT
Found at i:7073050 original size:7 final size:6
Alignment explanation
Indices: 7073004--7073352 Score: 135
Period size: 5 Copynumber: 62.2 Consensus size: 6
7072994 CAGTGATTAT
* *
7073004 TATATA GTAT-TA TATAT- TTTACA TAT-TA TAT-TA TAT-TA TATAGTA
1 TATATA -TATATA TATATA TATATA TATATA TATATA TATATA TATA-TA
* * **
7073049 TATAT- TATAT- TATTTA TGT-TA TATAT- TATATA GTATATA TAGGGTA
1 TATATA TATATA TATATA TATATA TATATA TATATA -TATATA TA-TATA
* * *
7073095 T-TATA TAGTATA TATAT- TATATGG TATGT- TA-AGTA T-TACA -ATAT-
1 TATATA TA-TATA TATATA TATAT-A TATATA TATA-TA TATATA TATATA
* **
7073139 TATATA TAT-TG TAT-TA CGTATA TA-ATA -ATAGTA TAT-TA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATA-TA TATATA TATATA
* *
7073183 TATATA TATATA TATATA T-TATA GTGTGTA T-TATA TATAT- TATA-A
1 TATATA TATATA TATATA TATATA -TATATA TATATA TATATA TATATA
* * *
7073228 TATAT- TATAT- TATAT- TATATA CATAAA TTTATA T-TATA TAT-TA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
*
7073271 TATAT- TATAGTA TAGTATA GTATATA TATATA T-TATT TAT-TA TA-ATA
1 TATATA TATA-TA TA-TATA -TATATA TATATA TATATA TATATA TATATA
*
7073318 TATAGTA T-TATT TATATA T-TAT- TAT-TA TCATATA T
1 TATA-TA TATATA TATATA TATATA TATATA T-ATATA T
7073353 TTATTACATT
Statistics
Matches: 265, Mismatches: 32, Indels: 90
0.68 0.08 0.23
Matches are distributed among these distances:
4 3 0.01
5 134 0.51
6 77 0.29
7 47 0.18
8 4 0.02
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (6 bp):
TATATA
Found at i:7073052 original size:14 final size:13
Alignment explanation
Indices: 7072999--7073405 Score: 191
Period size: 14 Copynumber: 31.7 Consensus size: 13
7072989 TTCGTCAGTG
7072999 ATTAT-TATATAGT
1 ATTATATATATA-T
*
7073012 ATTATATAT-TTT
1 ATTATATATATAT
*
7073024 A-CATATTATATTAT
1 ATTATA-TATA-TAT
7073038 ATTATATAGTATAT
1 ATTATATA-TATAT
*
7073052 ATTATATTATTTAT
1 ATTATA-TATATAT
*
7073066 GTTATATATTATAT
1 ATTATATA-TATAT
* **
7073080 AGTATATATAGGGT
1 ATTATATATA-TAT
7073094 ATTATATAGTATAT
1 ATTATATA-TATAT
*
7073108 A-TATTATATGGTAT
1 ATTA-TATAT-ATAT
* *
7073122 GTTA-AGTAT-TAC
1 ATTATA-TATATAT
*
7073134 AATAT-TATATAT
1 ATTATATATATAT
*
7073146 ATTGTAT-TACGTAT
1 ATTATATATA--TAT
*
7073160 ATAATA-ATAGTAT
1 ATTATATATA-TAT
7073173 ATTATATATATAT
1 ATTATATATATAT
7073186 ATATATATATATAT
1 AT-TATATATATAT
* * *
7073200 ATTATA-GTGTGT
1 ATTATATATATAT
7073212 ATTATATATAT-T
1 ATTATATATATAT
*
7073224 ATAATATAT-TAT
1 ATTATATATATAT
7073236 ATTATAT-TATAT
1 ATTATATATATAT
* * *
7073248 A-CATAAATTTAT
1 ATTATATATATAT
7073260 ATTATATATTATAT
1 ATTATATA-TATAT
7073274 ATTATAGTATAGTAT
1 ATTATA-TATA-TAT
*
7073289 AGTATATATATAT
1 ATTATATATATAT
*
7073302 ATTATTTAT-TAT
1 ATTATATATATAT
*
7073314 AATATATAGTAT-T
1 ATTATATA-TATAT
7073327 ATT-TATATAT-T
1 ATTATATATATAT
7073338 ATTAT-TATCATAT
1 ATTATATAT-ATAT
*
7073351 A-T-T-TAT-TAC
1 ATTATATATATAT
*
7073360 ATTAGTCTATATAT
1 ATTA-TATATATAT
*
7073374 GTTATATAT-T-T
1 ATTATATATATAT
* *
7073385 ATTATTTATTTAT
1 ATTATATATATAT
7073398 -TTATATAT
1 ATTATATAT
7073406 TTAATTATTT
Statistics
Matches: 301, Mismatches: 51, Indels: 85
0.69 0.12 0.19
Matches are distributed among these distances:
9 3 0.01
10 1 0.00
11 33 0.11
12 77 0.26
13 63 0.21
14 103 0.34
15 21 0.07
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (13 bp):
ATTATATATATAT
Found at i:7073071 original size:19 final size:18
Alignment explanation
Indices: 7073001--7073320 Score: 109
Period size: 19 Copynumber: 17.2 Consensus size: 18
7072991 CGTCAGTGAT
7073001 TATTATATAG-TATTATATA
1 TATTATATAGTTA-TAT-TA
* *
7073020 TTTTACATA-TTATATTA
1 TATTATATAGTTATATTA
7073037 TATTATATAGTATATATTA
1 TATTATATAGT-TATATTA
*
7073056 TATTATTTA-TGT-TA-TA
1 TATTATATAGT-TATATTA
7073072 TATTATATAG-TATATATA
1 TATTATATAGTTATAT-TA
7073090 GGGTATTATATAG-TATA-TA
1 ---TATTATATAGTTATATTA
* *
7073109 TATTATAT-GGTATGTTAA
1 TATTATATAGTTATATT-A
*
7073127 GTATTACAATA-TTATA-TA
1 -TATTA-TATAGTTATATTA
* *
7073145 TATTGTATTACG-TATATAA
1 TATTATA-TA-GTTATATTA
*
7073164 TAATAGTATA-TTATA-TA
1 TATTA-TATAGTTATATTA
7073181 TA-TATATA-TATATATATA
1 TATTATATAGT-TATAT-TA
7073199 TATTATAGT-GTGTATTATATA
1 TATTATA-TAGT-TA-TAT-TA
*
7073220 TATTATAATATATTATATTA
1 TATTAT-ATA-GTTATATTA
** *
7073240 TATTATATACATAAATTTA
1 TATTATATAGTTATA-TTA
*
7073259 TATTATATATTATATATTA
1 TATTATATAGT-TATATTA
7073278 TAGTATAGTATAGTATATATATA
1 TA-T-TA-TATAGT-TATAT-TA
* *
7073301 TATTATTTA-TTATAATA
1 TATTATATAGTTATATTA
7073318 TAT
1 TAT
7073321 AGTATTATTT
Statistics
Matches: 235, Mismatches: 28, Indels: 78
0.69 0.08 0.23
Matches are distributed among these distances:
15 7 0.03
16 30 0.13
17 26 0.11
18 29 0.12
19 63 0.27
20 26 0.11
21 34 0.14
22 15 0.06
23 5 0.02
ACGTcount: A:0.41, C:0.01, G:0.07, T:0.51
Consensus pattern (18 bp):
TATTATATAGTTATATTA
Found at i:7073345 original size:81 final size:79
Alignment explanation
Indices: 7073159--7073394 Score: 201
Period size: 81 Copynumber: 3.0 Consensus size: 79
7073149 GTATTACGTA
*
7073159 TATAATA-ATAGTATA-TTATATA-TA-TATATATATATATATATATTATAGTGT-GTAT--TAT
1 TATAATATATAGTATATTTATATATTATTAT-TATATAT-TATATATTATAGTATAGTATAGTAT
* *
7073217 ATATATTATAATATAT
64 ATATATTATTATTTAT
* ** *
7073233 TAT-AT-TATATTATATACATAAATT-TATATTATATATTATATATTATAGTATAGTATAGTATA
1 TATAATATATAGTATATTTATATATTAT-TATTATATATTATATATTATAGTATAGTATAGTATA
7073295 TATATATATTATTTAT
65 TATAT-TATTATTTAT
* *
7073311 TATAATATATAGTATTATTTATATATTATTATTATCATA-TATTTATTACATTAGTCTA-TATAT
1 TATAATATATAGTA-TATTTATATATTATTATTAT-ATATTATATATT--A-TAGTATAGTATA-
7073374 GT-TATATATTTATTATTTAT
60 GTATATATA-TTATTATTTAT
7073394 T
1 T
7073395 TATTTATATA
Statistics
Matches: 130, Mismatches: 13, Indels: 29
0.76 0.08 0.17
Matches are distributed among these distances:
73 9 0.07
74 21 0.16
75 12 0.09
76 3 0.02
77 9 0.07
78 11 0.08
79 2 0.02
80 6 0.05
81 22 0.17
82 4 0.03
83 22 0.17
84 9 0.07
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (79 bp):
TATAATATATAGTATATTTATATATTATTATTATATATTATATATTATAGTATAGTATAGTATAT
ATATTATTATTTAT
Found at i:7075401 original size:20 final size:18
Alignment explanation
Indices: 7075384--7075419 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7075374 AACTATATAA
*
7075384 ATAAAATTATCCTAATAT
1 ATAAAATTATACTAATAT
*
7075402 ATATAATTATACTAATAT
1 ATAAAATTATACTAATAT
7075420 CATGATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAAATTATACTAATAT
Found at i:7076801 original size:20 final size:18
Alignment explanation
Indices: 7076757--7076813 Score: 55
Period size: 20 Copynumber: 3.1 Consensus size: 18
7076747 CTACGGGCTT
*
7076757 TATAATA-ATATTTATAA
1 TATAATATATATATATAA
7076774 TATAATATTATTATATATAA
1 TATAATA-TA-TATATATAA
7076794 TA-ACATATATATATAATAA
1 TATA-ATATATATAT-ATAA
7076813 T
1 T
7076814 CGTCACTCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 7 0.21
18 5 0.15
19 9 0.26
20 13 0.38
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TATAATATATATATATAA
Found at i:7076804 original size:16 final size:15
Alignment explanation
Indices: 7076757--7076813 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 15
7076747 CTACGGGCTT
7076757 TATAATAATATTTATAA
1 TATAATAATA-TTAT-A
*
7076774 TATAATATTATTATA
1 TATAATAATATTATA
*
7076789 TATAATAACATATATA
1 TATAATAATAT-TATA
7076805 TATAATAAT
1 TATAATAAT
7076814 CGTCACTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
15 10 0.29
16 16 0.46
17 9 0.26
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TATAATAATATTATA
Found at i:7078489 original size:19 final size:19
Alignment explanation
Indices: 7078447--7078491 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7078437 GTAACCTGTA
*
7078447 AAATAATAATAAAATTAGT
1 AAATAATAATAAAATTAAT
7078466 AAATAATAATAATAA-TAAT
1 AAATAATAATAA-AATTAAT
*
7078485 TAATAAT
1 AAATAAT
7078492 TGAAAATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 21 0.91
20 2 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAATAATAATAAAATTAAT
Found at i:7082839 original size:5 final size:5
Alignment explanation
Indices: 7082820--7083326 Score: 418
Period size: 5 Copynumber: 103.6 Consensus size: 5
7082810 AAGATTATTA
*
7082820 TATAT TTTA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
7082869 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
7082919 TATAT TATAT TATAT TATA- T-TAT TATAT TATA- T-TAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
* *
7082965 TATAT TATAT TATAT TATAT TATAT CATAT TGTA- TAGTA- TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT TATAT
7083014 TAT-T TATAT TATA- TATA- TAGTAT GTAT-T ATATAT TATA- TATAT
1 TATAT TATAT TATAT TATAT TA-TAT -TATAT -TATAT TATAT TATAT
* * * * *
7083057 TATAA TAAATT ATATAT TATAAT AATAT TATAG TATAG TATA- TATAT
1 TATAT TATA-T -TATAT TAT-AT TATAT TATAT TATAT TATAT TATAT
7083104 TATA- T-TAT TACTAT TATAGT ATATAT T-TA- TATAT TAGTA- TATA-
1 TATAT TATAT TA-TAT TATA-T -TATAT TATAT TATAT TA-TAT TATAT
7083147 TATAT ATATAT TA-AT GT-TA- TATAT TATAT TATA- TATA- TATATT
1 TATAT -TATAT TATAT -TATAT TATAT TATAT TATAT TATAT TATA-T
* * *
7083190 TCTAT TATAT ATATAG TATA- TATAT T-TTT TATTAT TATAGT ATATAT
1 TATAT TATAT -TATAT TATAT TATAT TATAT TA-TAT TATA-T -TATAT
*
7083237 TATTAT T-TA- TATAT TATTAT T-TA- TATAT TATTAT TATAT ATTTAT
1 TA-TAT TATAT TATAT TA-TAT TATAT TATAT TA-TAT TATAT -TATAT
* * *
7083282 TACAT TAT-T CTATA- TACAT TATAT ATTTAT TAT-T TAT-T TA-AT TAT
1 TATAT TATAT -TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TAT
7083327 TTCAGGCACA
Statistics
Matches: 422, Mismatches: 27, Indels: 106
0.76 0.05 0.19
Matches are distributed among these distances:
3 10 0.02
4 81 0.19
5 263 0.62
6 55 0.13
7 13 0.03
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:7083315 original size:7 final size:7
Alignment explanation
Indices: 7083212--7083319 Score: 55
Period size: 7 Copynumber: 14.6 Consensus size: 7
7083202 ATAGTATATA
*
7083212 TATTTTT
1 TATTATT
7083219 TATTATT
1 TATTATT
7083226 ATAGTATATAT
1 -TA-T-TAT-T
7083237 TATTATT
1 TATTATT
7083244 TA-TATAT
1 TATTAT-T
7083251 TATTATT
1 TATTATT
7083258 TA-TATAT
1 TATTAT-T
7083265 TATTA-T
1 TATTATT
7083271 TATATATT
1 TAT-TATT
7083279 TATTA--
1 TATTATT
*
7083284 CATTATT
1 TATTATT
*
7083291 CTATATACAT
1 -TAT-TA-TT
7083301 TATATATT
1 TAT-TATT
7083309 TATTATT
1 TATTATT
7083316 TATT
1 TATT
7083320 TAATTATTTC
Statistics
Matches: 81, Mismatches: 5, Indels: 30
0.70 0.04 0.26
Matches are distributed among these distances:
5 4 0.05
6 10 0.12
7 30 0.37
8 20 0.25
9 10 0.12
10 6 0.07
11 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (7 bp):
TATTATT
Found at i:7083319 original size:11 final size:11
Alignment explanation
Indices: 7083236--7083328 Score: 55
Period size: 11 Copynumber: 7.8 Consensus size: 11
7083226 ATAGTATATA
7083236 TTATTATTTAT
1 TTATTATTTAT
*
7083247 ATATTA-TTAT
1 TTATTATTTAT
7083257 TTA-TATATTATT
1 TTATTAT-TTA-T
7083269 ATTATATATTTAT
1 -TTAT-TATTTAT
*
7083282 TACATTATTCTAT
1 T-TATTATT-TAT
* *
7083295 ATACATTATATAT
1 -T-TATTATTTAT
7083308 TTATTATTTAT
1 TTATTATTTAT
7083319 TTAATTATTT
1 TT-ATTATTT
7083329 CAGGCACAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
9 2 0.03
10 6 0.09
11 18 0.27
12 14 0.21
13 12 0.18
14 11 0.17
15 3 0.05
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (11 bp):
TTATTATTTAT
Found at i:7086840 original size:23 final size:23
Alignment explanation
Indices: 7086802--7086851 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
7086792 CATATTTGTA
7086802 CATTCTACGTGACACTACATGTG
1 CATTCTACGTGACACTACATGTG
* * *
7086825 CATTCTATGTGGCACTATATGTG
1 CATTCTACGTGACACTACATGTG
7086848 CATT
1 CATT
7086852 ATGGGATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (23 bp):
CATTCTACGTGACACTACATGTG
Found at i:7089824 original size:12 final size:12
Alignment explanation
Indices: 7089796--7089845 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
7089786 TAGATACTTT
*
7089796 TATTAACTTTCA
1 TATTTACTTTCA
* *
7089808 CATTTATTTTCA
1 TATTTACTTTCA
*
7089820 TATTTACTTCCA
1 TATTTACTTTCA
*
7089832 TATTTACTTCCA
1 TATTTACTTTCA
7089844 TA
1 TA
7089846 GTCCAATGTG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTTACTTTCA
Found at i:7091986 original size:14 final size:14
Alignment explanation
Indices: 7091967--7092006 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
7091957 TCCATGATCT
*
7091967 CATCTTGCTTACGC
1 CATCTTCCTTACGC
7091981 CATCTTCCTTACGC
1 CATCTTCCTTACGC
*
7091995 AATCTTCCTTAC
1 CATCTTCCTTAC
7092007 ATCATCCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.17, C:0.38, G:0.07, T:0.38
Consensus pattern (14 bp):
CATCTTCCTTACGC
Found at i:7096126 original size:16 final size:17
Alignment explanation
Indices: 7096084--7096125 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
7096074 TTTCGTCCCA
7096084 TATATATATTTTTTAAT
1 TATATATATTTTTTAAT
*
7096101 TATATATATTTTTTATT
1 TATATATATTTTTTAAT
7096118 TACTATAT
1 TA-TATAT
7096126 TCCTCTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATATTTTTTAAT
Found at i:7096157 original size:14 final size:14
Alignment explanation
Indices: 7096138--7096177 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
7096128 CTCTTTTTTT
7096138 TTATTTATATTATA
1 TTATTTATATTATA
*
7096152 TTATTTTTATTATA
1 TTATTTATATTATA
7096166 TATATCTTATAT
1 T-TAT-TTATAT
7096178 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TTATTTATATTATA
Found at i:7096158 original size:21 final size:21
Alignment explanation
Indices: 7096084--7096168 Score: 59
Period size: 21 Copynumber: 4.0 Consensus size: 21
7096074 TTTCGTCCCA
*
7096084 TATATATATTTTTTAATTATA-
1 TATAT-TATTTTTTATTTATAT
* *
7096105 TATATTTTTTATTTA-CTATAT
1 TATATTATTT-TTTATTTATAT
* * *
7096126 TCCTCTTTTTTTTTATTTATAT
1 T-ATATTATTTTTTATTTATAT
7096148 TATATTA-TTTTTATTATATAT
1 TATATTATTTTTTATT-TATAT
7096169 ATCTTATATC
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
20 16 0.31
21 22 0.43
22 13 0.25
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (21 bp):
TATATTATTTTTTATTTATAT
Found at i:7096305 original size:32 final size:36
Alignment explanation
Indices: 7096226--7096299 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 36
7096216 ATTTACTATG
*
7096226 TATATATTTTTTCTTAATATTATATTTTATACGTTTT
1 TATATATATTTTCTTAATATTATATTTTATA-GTTTT
*
7096263 TATATATATTTTCTTAATATTTTATTTT-T-GTTTT
1 TATATATATTTTCTTAATATTATATTTTATAGTTTT
7096297 TAT
1 TAT
7096300 TTATTTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 8 0.23
36 1 0.03
37 26 0.74
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.68
Consensus pattern (36 bp):
TATATATATTTTCTTAATATTATATTTTATAGTTTT
Found at i:7096339 original size:18 final size:18
Alignment explanation
Indices: 7096294--7096354 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
7096284 TTATTTTTGT
* *
7096294 TTTTATTTATTTA-TATA
1 TTTTATTTTTTTACTTTA
* *
7096311 TATTATATTTTTACTTTA
1 TTTTATTTTTTTACTTTA
7096329 TTTTATTTTTTT-CTATTA
1 TTTTATTTTTTTACT-TTA
7096347 TTTTATTT
1 TTTTATTT
7096355 CTTAATATCA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
17 12 0.33
18 24 0.67
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATTTTTTTACTTTA
Found at i:7096565 original size:25 final size:25
Alignment explanation
Indices: 7096537--7096588 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
7096527 GTGTCTTTGT
7096537 TTTTTAACATTTTATTCATTTT-TTA
1 TTTTTAACATTTTATT-ATTTTATTA
**
7096562 TTTTTATTATTTTATTATTTTATTA
1 TTTTTAACATTTTATTATTTTATTA
7096587 TT
1 TT
7096589 ATTTTTACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (25 bp):
TTTTTAACATTTTATTATTTTATTA
Found at i:7096566 original size:17 final size:17
Alignment explanation
Indices: 7096546--7096588 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
7096536 TTTTTTAACA
7096546 TTTTATTCATTTT-TTAT
1 TTTTATT-ATTTTATTAT
7096563 TTTTATTATTTTATTA-
1 TTTTATTATTTTATTAT
7096579 TTTTATTATT
1 TTTTATTATT
7096589 ATTTTTACGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.60
17 10 0.40
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTATTATTTTATTAT
Found at i:7096573 original size:16 final size:15
Alignment explanation
Indices: 7096545--7096593 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 15
7096535 GTTTTTTAAC
7096545 ATTTTATTCATTTTTT
1 ATTTTATT-ATTTTTT
7096561 ATTTTTATTATTTTATT
1 A-TTTTATTATTTT-TT
7096578 ATTTTATTATTATTTT
1 ATTTTATTATT-TTTT
7096594 TACGTGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 18 0.60
17 12 0.40
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTTATTATTTTTT
Found at i:7096626 original size:25 final size:24
Alignment explanation
Indices: 7096581--7096638 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
7096571 TTTTATTATT
7096581 TTATTATTATTTTTACGTGTTTTG
1 TTATTATTATTTTTACGTGTTTTG
* * * *
7096605 TTATTTTTCATTTTTTCTTGTTTTAT
1 TTATTATT-ATTTTTACGTGTTTT-G
7096631 TTATTATT
1 TTATTATT
7096639 CTCACGTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 7 0.26
25 13 0.48
26 7 0.26
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.72
Consensus pattern (24 bp):
TTATTATTATTTTTACGTGTTTTG
Found at i:7101562 original size:106 final size:106
Alignment explanation
Indices: 7101436--7101642 Score: 270
Period size: 106 Copynumber: 2.0 Consensus size: 106
7101426 CGTGCCACTC
* ** * * *
7101436 GAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATT
1 GAGACAACAAAAACTCAACTTCACAACAAAGGGACGACTGGCTGTCAACAAACAATTTCCCAATT
* * *
7101501 TCGGAGCCAATTTCAACTTCATAGCGAAGGATATTGGACTA
66 CCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTA
* ** *
7101542 GAGACAACAAAAACTCAACTTCACAACAAAGGGGCGACTGGCTGTCAACAAACAATTTCTTAGTT
1 GAGACAACAAAAACTCAACTTCACAACAAAGGGACGACTGGCTGTCAACAAACAATTTCCCAATT
* * *
7101607 CCAGAGCCAATTTTAACTTCACGGCGGAGGATATTG
66 CCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
7101643 AACTCGGAAC
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
106 85 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (106 bp):
GAGACAACAAAAACTCAACTTCACAACAAAGGGACGACTGGCTGTCAACAAACAATTTCCCAATT
CCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTA
Found at i:7102091 original size:37 final size:37
Alignment explanation
Indices: 7102050--7102204 Score: 102
Period size: 37 Copynumber: 4.4 Consensus size: 37
7102040 CGCTTGGGGT
7102050 AGTTTCCTTTGAAACAAAATTTTGTCTCCCTTGAGAC
1 AGTTTCCTTTGAAACAAAATTTTGTCTCCCTTGAGAC
* *
7102087 AGTTT-CTCTTGAAACATAAA---------CATTGAAAAC
1 AGTTTCCT-TTGAAACA-AAATTTTGTCTCCCTTG-AGAC
** * *
7102117 A-TTTCCTTTGAAA-TTAATTTTGTCTCTCTTGAGAT
1 AGTTTCCTTTGAAACAAAATTTTGTCTCCCTTGAGAC
* * *
7102152 ATTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGAT
1 AGTTTCCTTTGAAACAAAATTTTGTCTCCCTTGAGAC
7102189 AGTTT-CTCTTGAAACA
1 AGTTTCCT-TTGAAACA
7102205 TAAACCTTGA
Statistics
Matches: 88, Mismatches: 14, Indels: 32
0.66 0.10 0.24
Matches are distributed among these distances:
27 2 0.02
29 13 0.15
30 6 0.07
35 3 0.03
36 17 0.19
37 44 0.50
38 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.40
Consensus pattern (37 bp):
AGTTTCCTTTGAAACAAAATTTTGTCTCCCTTGAGAC
Found at i:7102103 original size:87 final size:87
Alignment explanation
Indices: 7101909--7102081 Score: 267
Period size: 87 Copynumber: 2.0 Consensus size: 87
7101899 GTTTCTATTG
*
7101909 AAACATAAACATTGAAAACATTCCCCTTGAAATGAATTTTATCTCGATTGAGAGAGTTTCCCTTG
1 AAACATAAACATTGAAAACATTCCCCTTGAAATAAATTTTATCTCGATTGAGAGAGTTTCCCTTG
*
7101974 AAACGAAATTTTATCTCCCTTA
66 AAACAAAATTTTATCTCCCTTA
* * * *
7101996 AAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTG-GGGTAGTTTCCTTT
1 AAACATAAACATTGAAAACATTCCCCTTGAAATAAATTTTATCTCGATTGAGAG-AGTTTCCCTT
*
7102060 GAAACAAAATTTTGTCTCCCTT
65 GAAACAAAATTTTATCTCCCTT
7102082 GAGACAGTTT
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 2 0.03
87 76 0.97
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (87 bp):
AAACATAAACATTGAAAACATTCCCCTTGAAATAAATTTTATCTCGATTGAGAGAGTTTCCCTTG
AAACAAAATTTTATCTCCCTTA
Found at i:7102105 original size:102 final size:102
Alignment explanation
Indices: 7101996--7102233 Score: 368
Period size: 102 Copynumber: 2.3 Consensus size: 102
7101986 ATCTCCCTTA
* * *
7101996 AAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGGGGTAGTTTCCTTTG
1 AAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCTTG
7102061 AAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
66 AAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
* * * * *
7102098 AAACATAAACATTGAAAACATTTCCTTTGAAATTAATTTTGTCTCTCTTGAGATATTTTCCCTTG
1 AAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCTTG
*
7102163 AAACAAAATTTTGTCTCCCTTGAGATAGTTTCTCTTG
66 AAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
* **
7102200 AAACATAAACCTTGAAAATGTTTCCCTTGAAATA
1 AAACATAAACATTGAAAACATTTCCCTTGAAATA
7102234 CAAAATATTT
Statistics
Matches: 122, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 122 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (102 bp):
AAACATAAACATTGAAAACATTTCCCTTGAAATAAATTTTATCTCGCTTGAGATAGTTTCCCTTG
AAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
Found at i:7102165 original size:36 final size:37
Alignment explanation
Indices: 7102132--7102204 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
7102122 CTTTGAAATT
* *
7102132 AATTTTGTCTCTCTTGAGATATTTTCCCTTGAAACAA
1 AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAA
*
7102169 AATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAACA
1 AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACA
7102205 TAAACCTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (37 bp):
AATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAA
Found at i:7102323 original size:37 final size:37
Alignment explanation
Indices: 7102273--7102371 Score: 173
Period size: 36 Copynumber: 2.7 Consensus size: 37
7102263 CGAGTTTTGT
7102273 GACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGA
1 GACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGA
*
7102310 GACAGTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGA
1 GACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGA
*
7102346 GACAGTTTTCCTTGAAACAAAATCTT
1 GACAGTTTCCCTTGAAACAAAATCTT
7102372 TGAATATATT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 34 0.59
37 24 0.41
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.36
Consensus pattern (37 bp):
GACAGTTTCCCTTGAAACAAAATCTTGTCTCTCTTGA
Found at i:7102413 original size:101 final size:102
Alignment explanation
Indices: 7102282--7102468 Score: 290
Period size: 101 Copynumber: 1.8 Consensus size: 102
7102272 TGACAGTTTC
* *
7102282 CCTTGAAACAAAATCTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAG
1 CCTTGAAACAAAATCTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCCCTCTTGAG
*
7102347 ACAGTTT-TCCTTGAAACAAAATCTTTGAATATATTTT
66 ACAGTTTCT-CTTCAAACAAAATCTTTGAATATATTTT
**
7102384 CCTTGAAAC-AAAT-TTCGTCTCCCTTGAGACAGTTTCTTTTGAAACAAATTTTGTCCCTCTTGA
1 CCTTGAAACAAAATCTT-GTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCCCTCTTGA
7102447 GACAGTTTCTCTTCAAACAAAA
65 GACAGTTTCTCTTCAAACAAAA
7102469 AAAAACCCTC
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
100 2 0.03
101 66 0.85
102 10 0.13
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (102 bp):
CCTTGAAACAAAATCTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCCCTCTTGAG
ACAGTTTCTCTTCAAACAAAATCTTTGAATATATTTT
Found at i:7102433 original size:36 final size:36
Alignment explanation
Indices: 7102381--7102467 Score: 124
Period size: 36 Copynumber: 2.4 Consensus size: 36
7102371 TTGAATATAT
7102381 TTTC-CTTGAAACAAATTTCGTCTCC-CTTGAGACAG
1 TTTCTCTTGAAACAAATTTCGTC-CCTCTTGAGACAG
* *
7102416 TTTCTTTTGAAACAAATTTTGTCCCTCTTGAGACAG
1 TTTCTCTTGAAACAAATTTCGTCCCTCTTGAGACAG
*
7102452 TTTCTCTTCAAACAAA
1 TTTCTCTTGAAACAAA
7102468 AAAAAACCCT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
35 6 0.13
36 40 0.87
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (36 bp):
TTTCTCTTGAAACAAATTTCGTCCCTCTTGAGACAG
Done.