Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 56
Found at i:7107326 original size:20 final size:20
Alignment explanation
Indices: 7107286--7107327 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7107276 ATAATATCGG
*
7107286 TACTTTTCTTCCAATATCAA
1 TACTTTTCTTCCAATACCAA
*
7107306 TACTTTTCTTCCAGTACCAA
1 TACTTTTCTTCCAATACCAA
7107326 TA
1 TA
7107328 TTGAGGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.43
Consensus pattern (20 bp):
TACTTTTCTTCCAATACCAA
Found at i:7113967 original size:21 final size:21
Alignment explanation
Indices: 7113943--7113992 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
7113933 CTCAGTATAC
*
7113943 ATACTCCTA-CAGGGAGTATCG
1 ATACTCCTACCAGAG-GTATCG
*
7113964 ATACT-CTACCATAGGTATCG
1 ATACTCCTACCAGAGGTATCG
7113984 ATACTCCTA
1 ATACTCCTA
7113993 TGAGTATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (21 bp):
ATACTCCTACCAGAGGTATCG
Found at i:7126000 original size:55 final size:55
Alignment explanation
Indices: 7125888--7126003 Score: 180
Period size: 55 Copynumber: 2.1 Consensus size: 55
7125878 GGCACTATGC
* *
7125888 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCGTTGTGT
1 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGAGTTGGGT
* *
7125943 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGGTAG-TGGGT
1 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTA-TGGGAGTTGGGT
7125998 GTGCAA
1 GTGCAA
7126004 CTCACGTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
55 52 0.93
56 4 0.07
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.34
Consensus pattern (55 bp):
GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGAGTTGGGT
Found at i:7130731 original size:11 final size:11
Alignment explanation
Indices: 7130715--7130739 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7130705 TGATCACCAA
7130715 GGCAGGCGCGG
1 GGCAGGCGCGG
7130726 GGCAGGCGCGG
1 GGCAGGCGCGG
7130737 GGC
1 GGC
7130740 TTATCAGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (11 bp):
GGCAGGCGCGG
Found at i:7151650 original size:30 final size:30
Alignment explanation
Indices: 7151489--7151654 Score: 154
Period size: 30 Copynumber: 5.4 Consensus size: 30
7151479 ACGTACATGG
* *
7151489 GGTGGTGGAGGCGGTGAAACCGGATGGTGT
1 GGTGGTGGAGGTGGTGAAATCGGATGGTGT
* * *
7151519 GGTGGTGGAGGAGGTGAAATCGGATGATTT
1 GGTGGTGGAGGTGGTGAAATCGGATGGTGT
* * *
7151549 GGCGGCGGAGGAGGTGAAATCGGATGGTGT
1 GGTGGTGGAGGTGGTGAAATCGGATGGTGT
** * **
7151579 GGTGGTGGAGGTGGTGACGAGGGCGGAGGGTAA
1 GGTGGTGGAGGTGGTGA--A-ATCGGATGGTGT
* *
7151612 GCTGGTGGAGGTGGCTGAAA-AGGATGGTGT
1 GGTGGTGGAGGTGG-TGAAATCGGATGGTGT
7151642 GGTGGTGGAGGTG
1 GGTGGTGGAGGTG
7151655 AGAAATAAGG
Statistics
Matches: 109, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
30 84 0.77
32 2 0.02
33 20 0.18
34 3 0.03
ACGTcount: A:0.19, C:0.07, G:0.54, T:0.20
Consensus pattern (30 bp):
GGTGGTGGAGGTGGTGAAATCGGATGGTGT
Found at i:7157187 original size:15 final size:15
Alignment explanation
Indices: 7157167--7157198 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7157157 AAAATATTTC
*
7157167 TTTCCCGTTCTTGAT
1 TTTCCCGTTCTGGAT
7157182 TTTCCCGTTCTGGAT
1 TTTCCCGTTCTGGAT
7157197 TT
1 TT
7157199 CGATATGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.16, T:0.53
Consensus pattern (15 bp):
TTTCCCGTTCTGGAT
Found at i:7157495 original size:17 final size:17
Alignment explanation
Indices: 7157473--7157516 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
7157463 GGTTGTGATT
7157473 GTGTTGAGCCCATTTAG
1 GTGTTGAGCCCATTTAG
**
7157490 GTGTTGAGTTCATTTAG
1 GTGTTGAGCCCATTTAG
7157507 GTGTTGAGCC
1 GTGTTGAGCC
7157517 ACTGATGCCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.16, C:0.14, G:0.32, T:0.39
Consensus pattern (17 bp):
GTGTTGAGCCCATTTAG
Found at i:7157996 original size:16 final size:17
Alignment explanation
Indices: 7157968--7158000 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
7157958 TCGCCGACAA
7157968 AAATTTAACTATTCACG
1 AAATTTAACTATTCACG
7157985 AAATTT-ACTATTCACG
1 AAATTTAACTATTCACG
7158001 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATTTAACTATTCACG
Found at i:7160178 original size:43 final size:44
Alignment explanation
Indices: 7160125--7160208 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 44
7160115 ATTCCATATT
* **
7160125 TTTAATTAATTA-ATTAAAATATCAAAAATTA-ATAATAATATAA
1 TTTAAATAATTACATT-AAATAAAAAAAATTAGATAATAATATAA
*
7160168 TTTAAATAATTACATTAATTAAAAAAAATTAGATAATAATA
1 TTTAAATAATTACATTAAATAAAAAAAATTAGATAATAATA
7160209 ATACTAACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 23 0.66
44 12 0.34
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (44 bp):
TTTAAATAATTACATTAAATAAAAAAAATTAGATAATAATATAA
Found at i:7160871 original size:31 final size:31
Alignment explanation
Indices: 7160831--7160904 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
7160821 ATGTTAATCT
* *
7160831 GTCAGAAATTTGTGACGGATCCACATATTTC
1 GTCACAAATTTATGACGGATCCACATATTTC
* *
7160862 GTCACAAATTTATGATGGGTCCACATATTTC
1 GTCACAAATTTATGACGGATCCACATATTTC
* *
7160893 TTCATAAATTTA
1 GTCACAAATTTA
7160905 AAAAATTGTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (31 bp):
GTCACAAATTTATGACGGATCCACATATTTC
Found at i:7161328 original size:33 final size:33
Alignment explanation
Indices: 7161286--7161359 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
7161276 TTGTCAGTAT
7161286 CGATACCCCTTACATCAAATGCAAATATGGTAC
1 CGATACCCCTTACATCAAATGCAAATATGGTAC
*
7161319 CGATACCCCTTACATCGAATGCAAATATGGTAC
1 CGATACCCCTTACATCAAATGCAAATATGGTAC
7161352 CGATACCC
1 CGATACCC
7161360 TACATAGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.23
Consensus pattern (33 bp):
CGATACCCCTTACATCAAATGCAAATATGGTAC
Found at i:7163462 original size:29 final size:29
Alignment explanation
Indices: 7163395--7163461 Score: 93
Period size: 28 Copynumber: 2.3 Consensus size: 29
7163385 GTTCGTGAAC
*
7163395 AATTTTAAAATATAATATATTAATTTTAT
1 AATTTTAAAATATAATATATTAATATTAT
*
7163424 ATTTTTAAAAT-TAAT-TATTAATAATTAT
1 AATTTTAAAATATAATATATTAAT-ATTAT
7163452 AATTTTAAAA
1 AATTTTAAAA
7163462 ACTATATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 7 0.21
28 17 0.50
29 10 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (29 bp):
AATTTTAAAATATAATATATTAATATTAT
Found at i:7163843 original size:10 final size:10
Alignment explanation
Indices: 7163828--7163882 Score: 56
Period size: 10 Copynumber: 5.1 Consensus size: 10
7163818 CATTTAAATA
7163828 ATAAACGAAC
1 ATAAACGAAC
7163838 ATAAACGAATGAAC
1 ATAAAC----GAAC
7163852 ATAAACGAAC
1 ATAAACGAAC
* *
7163862 ACAAATGAAC
1 ATAAACGAAC
7163872 ATAAACGAAC
1 ATAAACGAAC
7163882 A
1 A
7163883 ACACAAACAC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 27 0.73
14 10 0.27
ACGTcount: A:0.60, C:0.18, G:0.11, T:0.11
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:7163853 original size:14 final size:14
Alignment explanation
Indices: 7163834--7163860 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7163824 AATAATAAAC
7163834 GAACATAAACGAAT
1 GAACATAAACGAAT
7163848 GAACATAAACGAA
1 GAACATAAACGAA
7163861 CACAAATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.11
Consensus pattern (14 bp):
GAACATAAACGAAT
Found at i:7163870 original size:20 final size:20
Alignment explanation
Indices: 7163845--7163882 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7163835 AACATAAACG
7163845 AATGAACATAAACGAACACA
1 AATGAACATAAACGAACACA
7163865 AATGAACATAAACGAACA
1 AATGAACATAAACGAACA
7163883 ACACAAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.18, G:0.11, T:0.11
Consensus pattern (20 bp):
AATGAACATAAACGAACACA
Found at i:7167361 original size:21 final size:21
Alignment explanation
Indices: 7167335--7167382 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
7167325 TAATTTTCAA
7167335 ACATTGTTGCACCTAATTTTG
1 ACATTGTTGCACCTAATTTTG
7167356 ACATTGTTGCACCTAATTTTG
1 ACATTGTTGCACCTAATTTTG
7167377 ACATTG
1 ACATTG
7167383 CAATATTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.42
Consensus pattern (21 bp):
ACATTGTTGCACCTAATTTTG
Found at i:7168671 original size:21 final size:21
Alignment explanation
Indices: 7168632--7168672 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7168622 GATAGAAAAT
*
7168632 TATCTAAAATATTATTATTTC
1 TATCTAAAATATTAATATTTC
7168653 TATCTAAAAT-TTCAATATTT
1 TATCTAAAATATT-AATATTT
7168673 TAAATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (21 bp):
TATCTAAAATATTAATATTTC
Found at i:7170434 original size:24 final size:24
Alignment explanation
Indices: 7170398--7170451 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
7170388 ATATAGTGCC
* *
7170398 AGGAGTTCACAAATGTACTAACAG
1 AGGAGTACACAAAAGTACTAACAG
* * *
7170422 AGGAGTACCCAAAAGTACTAATAT
1 AGGAGTACACAAAAGTACTAACAG
7170446 AGGAGT
1 AGGAGT
7170452 TCATGTATGC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.20
Consensus pattern (24 bp):
AGGAGTACACAAAAGTACTAACAG
Found at i:7171688 original size:81 final size:81
Alignment explanation
Indices: 7171588--7171894 Score: 395
Period size: 81 Copynumber: 3.8 Consensus size: 81
7171578 TTTAACTTGC
* * * * *
7171588 ATTGACACTTTTCTGCCAAATGCACAATTAGGCCATTTATCTTTTACTCAATATTATTTAATTGT
1 ATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAACATTCTTTAATCGT
**
7171653 TCATCTAACTAACATG
66 TCATCTAACTGGCATG
* * *
7171669 ATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAATGA-TC-TTAACCA
1 ATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAA-CATTCTTTAATCG
*
7171732 TTCATCTAACTGGCATA
65 TTCATCTAACTGGCATG
* * ** * **
7171749 ATTGACACCTTTCAGTCAAATGCACTGCTAGGTCATTTATCTTTTACTCAACGGTCTTTAATCG-
1 ATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAACATTCTTTAATCGT
7171813 TCAATCTAACTGGCATG
66 TC-ATCTAACTGGCATG
* *
7171830 ATTGACACCTTCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACATTCTTTAATCGT
1 ATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAACATTCTTTAATCGT
7171895 CCTGTCAAAT
Statistics
Matches: 194, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
80 68 0.35
81 125 0.64
82 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.37
Consensus pattern (81 bp):
ATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAACATTCTTTAATCGT
TCATCTAACTGGCATG
Found at i:7171788 original size:161 final size:161
Alignment explanation
Indices: 7171588--7171880 Score: 426
Period size: 161 Copynumber: 1.8 Consensus size: 161
7171578 TTTAACTTGC
* * * * * *
7171588 ATTGACACTTTTCTGCCAAATGCACAATTAGGCCATTTATCTTTTACTCAATATTATTTAATTGT
1 ATTGACACCTTTCAGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAACAGTATTTAATCG-
*
7171653 TC-ATCTAACTAACATGATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACT
65 TCAATCTAACTAACATGATTGACACCTTCCTGCCAAATGCACAACTAGGCCATTTATCTTTTACT
7171717 CAATGATCTTAACCATTCATCTAACTGGCATA
130 CAATGATCTTAACCATTCATCTAACTGGCATA
* ** * * *
7171749 ATTGACACCTTTCAGTCAAATGCACTGCTAGGTCATTTATCTTTTACTCAACGGTCTTTAATCGT
1 ATTGACACCTTTCAGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAACAGTATTTAATCGT
** *
7171814 CAATCTAACTGGCATGATTGACACCTTCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTC
66 CAATCTAACTAACATGATTGACACCTTCCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTC
7171879 AA
131 AA
7171881 CATTCTTTAA
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
160 2 0.02
161 113 0.98
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (161 bp):
ATTGACACCTTTCAGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAACAGTATTTAATCGT
CAATCTAACTAACATGATTGACACCTTCCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTC
AATGATCTTAACCATTCATCTAACTGGCATA
Found at i:7171922 original size:54 final size:54
Alignment explanation
Indices: 7171840--7171944 Score: 194
Period size: 54 Copynumber: 1.9 Consensus size: 54
7171830 ATTGACACCT
7171840 TCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAAC-ATTCTTTAATCG
1 TCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGA-TCTTTAATCG
7171894 TCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAA
1 TCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAA
7171945 CCATTCATCT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
54 49 0.98
55 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.36
Consensus pattern (54 bp):
TCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAATCG
Found at i:7172005 original size:135 final size:135
Alignment explanation
Indices: 7171763--7172025 Score: 402
Period size: 135 Copynumber: 1.9 Consensus size: 135
7171753 ACACCTTTCA
** * * *
7171763 GTCAAATGCACTGCTAGGTCATTTATCTTTTACTCAACGGTCTTTAATCGTCAATCTAACTGGCA
1 GTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAACCGTCAATCTAACTGGCA
* * * *
7171828 TGATTGACACCTTCCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACATTCTTTAATC
66 TAATTGACACATTCCTGTCAAATACACAACTAGGCCATTTATCTTTTACTCAACAATCTTTAATC
7171893 GTCCT
131 GTCCT
*
7171898 GTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTC-ATCTAACTGGC
1 GTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAACC-GTCAATCTAACTGGC
* *
7171962 ATAATTGACACATTTCTGTCAAATACACAGCTAGGCCATTTATCTTTTACTCAACAATCTTTAA
65 ATAATTGACACATTCCTGTCAAATACACAACTAGGCCATTTATCTTTTACTCAACAATCTTTAA
7172026 CCATTCATCT
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
135 113 0.98
136 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (135 bp):
GTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAACCGTCAATCTAACTGGCA
TAATTGACACATTCCTGTCAAATACACAACTAGGCCATTTATCTTTTACTCAACAATCTTTAATC
GTCCT
Found at i:7172031 original size:81 final size:81
Alignment explanation
Indices: 7171896--7172322 Score: 613
Period size: 81 Copynumber: 5.3 Consensus size: 81
7171886 TTTAATCGTC
*
7171896 CTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTGG
1 CTGTCAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTGG
7171961 CATAATTGACACATTT
66 CATAATTGACACATTT
* *
7171977 CTGTCAAATACACAGCTAGGCCATTTATCTTTTACTCAACAATCTTTAACCATTCATCTAACTGG
1 CTGTCAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTGG
*
7172042 CATGATTGACACATTT
66 CATAATTGACACATTT
** * * * * *
7172058 CTGTCAAATGCACATATATGCCATTTAACTTTTACTCAACGGTCTTTAACCGTTCATATAACTGG
1 CTGTCAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTGG
7172123 CATAATTGACACATTT
66 CATAATTGACACATTT
* * * * *
7172139 CTGTTAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTTACCGTTCATATAATTGG
1 CTGTCAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTGG
* * *
7172204 CATGATTAACACCTTT
66 CATAATTGACACATTT
* * * *
7172220 CTGT-AAAGTGCACAGATAGGCCATTTATCTTTTAATCAACGGTCTGTAACCATTCATCTAACTG
1 CTGTCAAA-TGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTG
*
7172284 GCATAATTGACACCTTT
65 GCATAATTGACACATTT
*
7172301 CTGTCAAATGCAAAGCTAGGCC
1 CTGTCAAATGCACAGCTAGGCC
7172323 TCAAAGGCAC
Statistics
Matches: 307, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
80 3 0.01
81 301 0.98
82 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.34
Consensus pattern (81 bp):
CTGTCAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTGG
CATAATTGACACATTT
Found at i:7172064 original size:216 final size:215
Alignment explanation
Indices: 7171685--7172106 Score: 659
Period size: 216 Copynumber: 2.0 Consensus size: 215
7171675 ACCTTTCTGC
*
7171685 CAAATGCACAACTAGGCCATTTATCTTTTACTCAATGATCTTAACCATTCATCTAACTGGCATAA
1 CAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTAACCATTCATCTAACTGGCATAA
* * * * ** *
7171750 TTGACACCTTTCAGTCAAATGCACTGCTAGGTCATTTATCTTTTACTCAACGGTCTTTAATCGTC
66 TTGACACATTTCAGTCAAATACACAGCTAGGCCATTTATCTTTTACTCAACAATCTTTAACCGTC
* *
7171815 AATCTAACTGGCATGATTGACACCTTCCTGTCAAATGCACA-ACTAGGCCATTTATCTTTTACTC
131 AATCTAACTGGCATGATTGACACATTCCTGTCAAATGCACATA-TAGGCCATTTAACTTTTACTC
*
7171879 AACATTCTTTAATCGTCCTGT
195 AACAGTCTTTAATCGTCCTGT
7171900 CAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTTAACCATTCATCTAACTGGCATA
1 CAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATC-TTAACCATTCATCTAACTGGCATA
* *
7171965 ATTGACACATTTCTGTCAAATACACAGCTAGGCCATTTATCTTTTACTCAACAATCTTTAACCAT
65 ATTGACACATTTCAGTCAAATACACAGCTAGGCCATTTATCTTTTACTCAACAATCTTTAACC-G
* *
7172030 TC-ATCTAACTGGCATGATTGACACATTTCTGTCAAATGCACATATATGCCATTTAACTTTTACT
129 TCAATCTAACTGGCATGATTGACACATTCCTGTCAAATGCACATATAGGCCATTTAACTTTTACT
*
7172094 CAACGGTCTTTAA
194 CAACAGTCTTTAA
7172107 CCGTTCATAT
Statistics
Matches: 188, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
215 39 0.21
216 146 0.78
217 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.35
Consensus pattern (215 bp):
CAAATGCACAACTAGGCCATTTATCTTTTACTCAACGATCTTAACCATTCATCTAACTGGCATAA
TTGACACATTTCAGTCAAATACACAGCTAGGCCATTTATCTTTTACTCAACAATCTTTAACCGTC
AATCTAACTGGCATGATTGACACATTCCTGTCAAATGCACATATAGGCCATTTAACTTTTACTCA
ACAGTCTTTAATCGTCCTGT
Found at i:7172150 original size:297 final size:296
Alignment explanation
Indices: 7171604--7172178 Score: 832
Period size: 297 Copynumber: 1.9 Consensus size: 296
7171594 ACTTTTCTGC
* * *** *
7171604 CAAATGCACAATTAGGCCATTTATCTTTTACTCAATATTATTTAATTGTTCATCTAACTAACATG
1 CAAATGCACAACTAGGCCATTTATCTTTTACTCAAGATTATTTAACCATTCATCTAACTAACATA
* * **
7171669 ATTGACACCTTTCTGCCAAATGCACAACTAGGCCATTTATCTTTTACTCAATGATCTTAACCATT
66 ATTGACACATTTCTGCCAAATACACAACTAGGCCATTTATCTTTTACTCAACAATCTTAACCATT
* * * *
7171734 CATCTAACTGGCATAATTGACACCTTTCAGTCAAATGCACTGCTAGGTCATTTATCTTTTACTCA
131 CATCTAACTGGCATAATTGACACATTTCAGTCAAATGCACTGATAGGCCATTTAACTTTTACTCA
* * * *
7171799 ACGGTCTTTAATCGTCAATCTAACTGGCATGATTGACACCTTCCTGTCAAATGCACAACTAGGCC
196 ACGGTCTTTAACCGTCAATATAACTGGCATAATTGACACATTCCTGTCAAATGCACAACTAGGCC
7171864 ATTTATCTTTTACTCAACATTCTTTAATCGTCCTGT
261 ATTTATCTTTTACTCAACATTCTTTAATCGTCCTGT
* **
7171900 CAAATGCACAACTAGGCCATTTATCTTTTACTCAACGA-TCTTTAACCATTCATCTAACTGGCAT
1 CAAATGCACAACTAGGCCATTTATCTTTTACTCAA-GATTATTTAACCATTCATCTAACTAACAT
* *
7171964 AATTGACACATTTCTGTCAAATACACAGCTAGGCCATTTATCTTTTACTCAACAATCTTTAACCA
65 AATTGACACATTTCTGCCAAATACACAACTAGGCCATTTATCTTTTACTCAACAATC-TTAACCA
* * *
7172029 TTCATCTAACTGGCATGATTGACACATTTCTGTCAAATGCACAT-ATATGCCATTTAACTTTTAC
129 TTCATCTAACTGGCATAATTGACACATTTCAGTCAAATGCAC-TGATAGGCCATTTAACTTTTAC
* * *
7172093 TCAACGGTCTTTAACCGTTC-ATATAACTGGCATAATTGACACATTTCTGTTAAATGCACAGCTA
193 TCAACGGTCTTTAACCG-TCAATATAACTGGCATAATTGACACATTCCTGTCAAATGCACAACTA
7172157 GGCCATTTATCTTTTACTCAAC
257 GGCCATTTATCTTTTACTCAAC
7172179 GATCTTTTAC
Statistics
Matches: 246, Mismatches: 29, Indels: 7
0.87 0.10 0.02
Matches are distributed among these distances:
296 104 0.42
297 139 0.57
298 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.36
Consensus pattern (296 bp):
CAAATGCACAACTAGGCCATTTATCTTTTACTCAAGATTATTTAACCATTCATCTAACTAACATA
ATTGACACATTTCTGCCAAATACACAACTAGGCCATTTATCTTTTACTCAACAATCTTAACCATT
CATCTAACTGGCATAATTGACACATTTCAGTCAAATGCACTGATAGGCCATTTAACTTTTACTCA
ACGGTCTTTAACCGTCAATATAACTGGCATAATTGACACATTCCTGTCAAATGCACAACTAGGCC
ATTTATCTTTTACTCAACATTCTTTAATCGTCCTGT
Found at i:7172389 original size:68 final size:68
Alignment explanation
Indices: 7172272--7172526 Score: 411
Period size: 68 Copynumber: 3.8 Consensus size: 68
7172262 TCTGTAACCA
* *
7172272 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAAAGCTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
7172337 CCT
66 CCT
* * *
7172340 TTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGCACAGTTAGGCCTCAAAGACACTTAT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
7172405 CCT
66 CCT
* * **
7172408 TTCATCTAACTAGCATAATTGACACCTTTCTGTAAAATGCACAGTTAGGCCTCAAAGGTGCTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
7172473 CCT
66 CCT
* *
7172476 TTCACCTAACTGGCATAATTGACACCTTTATGTCAAATGCACAGTTAGGCC
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCC
7172527 ATTTATCTTT
Statistics
Matches: 171, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 171 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (68 bp):
TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
CCT
Found at i:7172803 original size:54 final size:54
Alignment explanation
Indices: 7172743--7172941 Score: 283
Period size: 54 Copynumber: 3.6 Consensus size: 54
7172733 TTCCCTATAA
* *
7172743 GGAAATTAATACACTTAGTATGTATTTCTTAGTTTGCACACATAGTGCCCATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAGTTTGCACACATAGTGCCCATAC
* *
7172797 GGAAATTCATACACTTAGTATAAATTTCTTAGTTTGCACACATAATGCCCATAC
1 GGAAATTCATACACTTAGTATGAATTTCTTAGTTTGCACACATAGTGCCCATAC
* * *
7172851 CGAAATTCATACACTTAGTATGAATTTCTTAGTTTTGCAAACA-AGTGCCCATAT
1 GGAAATTCATACACTTAGTATGAATTTCTTAG-TTTGCACACATAGTGCCCATAC
* *
7172905 GAAAATTCATACACTTAGTATGGATTTTCTTAAGTTT
1 GGAAATTCATACACTTAGTAT-GAATTTCTT-AGTTT
7172942 TTGCACGCTT
Statistics
Matches: 130, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
54 108 0.83
55 20 0.15
56 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (54 bp):
GGAAATTCATACACTTAGTATGAATTTCTTAGTTTGCACACATAGTGCCCATAC
Found at i:7173298 original size:19 final size:21
Alignment explanation
Indices: 7173255--7173298 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7173245 TGGCCCACTA
*
7173255 GTATCGATACTACTATACTAGG
1 GTATCGATACTACTATA-TACG
7173277 GTATCGATACT-CTAT-TACG
1 GTATCGATACTACTATATACG
7173296 GTA
1 GTA
7173299 CTGATACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
21 4 0.19
22 11 0.52
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (21 bp):
GTATCGATACTACTATATACG
Found at i:7177608 original size:81 final size:81
Alignment explanation
Indices: 7177508--7178284 Score: 977
Period size: 81 Copynumber: 9.6 Consensus size: 81
7177498 GCATTTACTT
* * * ** * *
7177508 TTCATCTAACTTGCATGATTTACACTTTTCTACCAAATGCACAATTAGGCCATTTATCTTTTTCT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
**
7177573 CAACATTCTTTAACCG
66 CAACGGTCTTTAACCG
* * ** *
7177589 TTCTTCTAACTGGCATGATTGACACCTTTATACCAAATGTACAACTAGGCCA-TTATCTTTTACT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
*
7177653 CAGCGGTCTTTAACCG
66 CAACGGTCTTTAACCG
* * * * * * *
7177669 TTCATCTAACTGGCATAATTGACACCTTTTTTTCAAATGAATAGCTAGACCATTTATCTTTTACT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
* *
7177734 CAATGGTCTTTAACCA
66 CAACGGTCTTTAACCG
* * *
7177750 TTCATCTAACTGGCATGATTGACACATATCTGTCAAATGTACAACTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
*
7177815 CAACGGTCTTTAACTG
66 CAACGGTCTTTAACCG
* * *
7177831 TTCATCTAATTGGTATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
* *
7177896 CAACTGTTTTTAACCG
66 CAACGGTCTTTAACCG
* *
7177912 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTAACTTTGACT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
* *
7177977 CAACTGTTTTTAACCG
66 CAACGGTCTTTAACCG
** * * *
7177993 TTCATCTAACTAACATAATTGTCA-CTTTCTGTCAAATGCACAACTAGGCTATTTATCTTTTACT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
* *
7178057 TAACGGTCTTTATCCG
66 CAACGGTCTTTAACCG
* * *
7178073 TTCATCTAACTGGCATGATTGAAACCTTTCTTTCAAATGCACAGA-TATGCCATTTATCTTTTAC
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACA-ACTAGGCCATTTATCTTTTAC
* *
7178137 TCAATGGTCTTTAACTG
65 TCAACGGTCTTTAACCG
* * * * *
7178154 TTTATCTAACTGGCATAATTTACACCTTTATGTCAAATGCAAAACTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
*
7178219 CAACGGTCATTAACCG
66 CAACGGTCTTTAACCG
* * * * *
7178235 TTCATATAACT-ACATAATTGGCACCTTTCTGTCAAATGCACAGCTAGGCC
1 TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCC
7178285 TCAAGGCACT
Statistics
Matches: 601, Mismatches: 91, Indels: 9
0.86 0.13 0.01
Matches are distributed among these distances:
80 169 0.28
81 431 0.72
82 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (81 bp):
TTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
CAACGGTCTTTAACCG
Found at i:7178049 original size:242 final size:241
Alignment explanation
Indices: 7177508--7178284 Score: 970
Period size: 242 Copynumber: 3.2 Consensus size: 241
7177498 GCATTTACTT
* * * ** * *
7177508 TTCATCTAACTTGCATGATTTACACTTTTCTACCAAATGCACAATTAGGCCATTTATCTTTTTCT
1 TTCATCTAAC-TACATAATTGACAC-TTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
** * * * *
7177573 CAACATTCTTTAACCGTTCTTCTAACTGGCATGATTGACACCTTTATACCAAATGTACAACTAGG
64 CAACGGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTATCAAATGCACAACTAGG
* * * *
7177638 CCA-TTATCTTTTACTCAGCGGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTTTTT
129 CCATTTATCTTTTACTCAACTGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTATGT
* * *
7177702 CAAATG-AATAGCTAGACCATTTATCTTTTACTCAA-TGGTCTTTAACCA
194 CAAATGCAA-AACTAGGCCATTTATCTTTTACTCAACT-GTCTTTAACCG
* * * *
7177750 TTCATCTAACTGGCATGATTGACACATATCTGTCAAATGTACAACTAGGCCATTTATCTTTTACT
1 TTCATCTAACT-ACATAATTGACAC-TTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
* * * * *
7177815 CAACGGTCTTTAACTGTTCATCTAATTGGTATAATTGACACCTTTCTGTCAAATGCACAACTAGG
64 CAACGGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTATCAAATGCACAACTAGG
* * *
7177880 CCATTTATCTTTTACTCAACTGTTTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTGT
129 CCATTTATCTTTTACTCAACTGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTATGT
* * * *
7177945 CAAATGCACAACTAGGCCATTTAACTTTGACTCAACTGTTTTTAACCG
194 CAAATGCAAAACTAGGCCATTTATCTTTTACTCAACTGTCTTTAACCG
* * *
7177993 TTCATCTAACTAACATAATTGTCACTTTCTGTCAAATGCACAACTAGGCTATTTATCTTTTACTT
1 TTCATCTAACT-ACATAATTGACACTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTC
* * * *
7178058 AACGGTCTTTATCCGTTCATCTAACTGGCATGATTGAAACCTTTCTTTCAAATGCACAGA-TATG
65 AACGGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTATCAAATGCACA-ACTAGG
* * *
7178122 CCATTTATCTTTTACTCAA-TGGTCTTTAACTGTTTATCTAACTGGCATAATTTACACCTTTATG
129 CCATTTATCTTTTACTCAACT-GTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTATG
* *
7178186 TCAAATGCAAAACTAGGCCATTTATCTTTTACTCAACGGTCATTAACCG
193 TCAAATGCAAAACTAGGCCATTTATCTTTTACTCAACTGTCTTTAACCG
* * *
7178235 TTCATATAACTACATAATTGGCACCTTTCTGTCAAATGCACAGCTAGGCC
1 TTCATCTAACTACATAATTGACA-CTTTCTGTCAAATGCACAACTAGGCC
7178285 TCAAGGCACT
Statistics
Matches: 464, Mismatches: 64, Indels: 14
0.86 0.12 0.03
Matches are distributed among these distances:
241 13 0.03
242 335 0.72
243 114 0.25
244 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (241 bp):
TTCATCTAACTACATAATTGACACTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTCA
ACGGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTATCAAATGCACAACTAGGCC
ATTTATCTTTTACTCAACTGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTATGTCA
AATGCAAAACTAGGCCATTTATCTTTTACTCAACTGTCTTTAACCG
Found at i:7178111 original size:323 final size:323
Alignment explanation
Indices: 7177508--7178284 Score: 1013
Period size: 323 Copynumber: 2.4 Consensus size: 323
7177498 GCATTTACTT
* * * * * ** * *
7177508 TTCATCTAACTTGCATGATTTACACTTTTCTACCAAATGCACAATTAGGCCATTTATCTTTTTCT
1 TTCATCTAACTGGCATAATTGACACCTTTATGTCAAATGCACAACTAGGCCATTTATCTTTTACT
* * ** *
7177573 CAACAT-TCTTTAACCGTTCTTCTAACTGGCATGATTGACACCTTTATACCAAATGTACAACTAG
66 CAAC-TGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAG
* * * ** * *
7177637 GCCATTATCTTTTACTCAGCGGTCTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTTTTT
130 GCCATTAACTTTGACTCAACGGTCTTTAACCGTTCATCTAACTAACATAATTGACACCTTTCTGT
* * *
7177702 CAAATGAATAGCTAGACCATTTATCTTTTACTCAATGGTCTTTAACCATTCATCTAACTGGCATG
195 CAAATGAACAACTAGACCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATG
* *
7177767 ATTGACACATATCTGTCAAATGTACA-ACTAGGCCATTTATCTTTTACTCAACGGTCTTTAACTG
260 ATTGAAACATATCTGTCAAATGCACAGA-TAGGCCATTTATCTTTTACTCAACGGTCTTTAACTG
* * *
7177831 TTCATCTAATTGGTATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTATGTCAAATGCACAACTAGGCCATTTATCTTTTACT
*
7177896 CAACTGTTTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGG
66 CAACTGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGG
* * *
7177961 CCATTTAACTTTGACTCAACTGTTTTTAACCGTTCATCTAACTAACATAATTGTCA-CTTTCTGT
131 CCA-TTAACTTTGACTCAACGGTCTTTAACCGTTCATCTAACTAACATAATTGACACCTTTCTGT
* * * * * *
7178025 CAAATGCACAACTAGGCTATTTATCTTTTACTTAACGGTCTTTATCCGTTCATCTAACTGGCATG
195 CAAATGAACAACTAGACCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATG
* * * * *
7178090 ATTGAAACCTTTCTTTCAAATGCACAGATATGCCATTTATCTTTTACTCAATGGTCTTTAACTG
260 ATTGAAACATATCTGTCAAATGCACAGATAGGCCATTTATCTTTTACTCAACGGTCTTTAACTG
* * *
7178154 TTTATCTAACTGGCATAATTTACACCTTTATGTCAAATGCAAAACTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTATGTCAAATGCACAACTAGGCCATTTATCTTTTACT
* * * * * * *
7178219 CAACGGTCATTAACCGTTCATATAACT-ACATAATTGGCACCTTTCTGTCAAATGCACAGCTAGG
66 CAACTGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGG
7178283 CC
131 CC
7178285 TCAAGGCACT
Statistics
Matches: 395, Mismatches: 56, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
322 36 0.09
323 314 0.79
324 45 0.11
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (323 bp):
TTCATCTAACTGGCATAATTGACACCTTTATGTCAAATGCACAACTAGGCCATTTATCTTTTACT
CAACTGTCTTTAACCGTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAACTAGG
CCATTAACTTTGACTCAACGGTCTTTAACCGTTCATCTAACTAACATAATTGACACCTTTCTGTC
AAATGAACAACTAGACCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATGA
TTGAAACATATCTGTCAAATGCACAGATAGGCCATTTATCTTTTACTCAACGGTCTTTAACTG
Found at i:7178328 original size:67 final size:68
Alignment explanation
Indices: 7178247--7178474 Score: 325
Period size: 67 Copynumber: 3.4 Consensus size: 68
7178237 CATATAACTA
* * *
7178247 CATAATTGGCACCTTTCTGTCAAATGCACAGCTAGGCCTC-AAGGCACTTAGCCTTTCATCTAAT
1 CATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAAC
7178311 TGG
66 TGG
* * * *
7178314 CATAATTGAAACCTTTCTGTTAAATGCACAGTTAGG-CTCAAAGACACTTAACCTTTCATCTAAC
1 CATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAAC
7178378 TGG
66 TGG
* * *
7178381 CATAATTGACACATTTCTGTCAAATGCACAATTAGGCTTCAAAGGCACTTAGCCTTTCATCTAAC
1 CATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAAC
*
7178446 AGG
66 TGG
* *
7178449 AATAATTGACACCTTTCTATCAAATG
1 CATAATTGACACCTTTCTGTCAAATG
7178475 TATAGGTAGG
Statistics
Matches: 141, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
66 3 0.02
67 88 0.62
68 50 0.35
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (68 bp):
CATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAAC
TGG
Found at i:7178474 original size:135 final size:133
Alignment explanation
Indices: 7178228--7178474 Score: 350
Period size: 135 Copynumber: 1.8 Consensus size: 133
7178218 TCAACGGTCA
* * *
7178228 TTAACCGTTCATATAACTACATAATTGGCACCTTTCTGTCAAATGCACAGCTAGGCCTCAAGGCA
1 TTAACCGTTCATATAACTACATAATTGACACATTTCTGTCAAATGCACAACTAGGCCTCAAGGCA
** * * *
7178293 CTTAGCCTTTCATCTAATTGGCATAATTGAAACCTTTCTGTTAAATGCACAGTTAGGCTCAAAGA
66 CTTAGCCTTTCATCTAACAGGAATAATTGAAACCTTTCTATCAAATGCACAGTTAGGCTCAAAGA
7178358 CAC
131 CAC
* * * * *
7178361 TTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAATTAGGCTTCAAAGG
1 TTAACCGTTCATATAACT-ACATAATTGACACATTTCTGTCAAATGCACAACTAGGCCTC-AAGG
*
7178426 CACTTAGCCTTTCATCTAACAGGAATAATTGACACCTTTCTATCAAATG
64 CACTTAGCCTTTCATCTAACAGGAATAATTGAAACCTTTCTATCAAATG
7178475 TATAGGTAGG
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
133 16 0.16
134 35 0.36
135 47 0.48
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (133 bp):
TTAACCGTTCATATAACTACATAATTGACACATTTCTGTCAAATGCACAACTAGGCCTCAAGGCA
CTTAGCCTTTCATCTAACAGGAATAATTGAAACCTTTCTATCAAATGCACAGTTAGGCTCAAAGA
CAC
Found at i:7178762 original size:54 final size:54
Alignment explanation
Indices: 7178703--7178895 Score: 229
Period size: 54 Copynumber: 3.6 Consensus size: 54
7178693 TTCCCTATGA
* *
7178703 GGAAATTAATACACTTAGTATGTATTTCTTAGTTTGCGCACATAGTGCCCATAC
1 GGAAATTAATACACTTAGTATGAATTTCTTAGTTTGCACACATAGTGCCCATAC
* *
7178757 GGAAATTCATACACTTAGTATGAATTTCTTAGTTTGCACACATAATGCCCATAC
1 GGAAATTAATACACTTAGTATGAATTTCTTAGTTTGCACACATAGTGCCCATAC
* *
7178811 CG-----AA-ACACTTAGTATGAATTTCATAGTTTTGCACACA-AGTGCCCATAC
1 GGAAATTAATACACTTAGTATGAATTTCTTAG-TTTGCACACATAGTGCCCATAC
* * *
7178859 GAAAATTCATACACTTAGTATGGATTTTCTTAAGTTT
1 GGAAATTAATACACTTAGTAT-GAATTTCTT-AGTTT
7178896 TTGCATGCTT
Statistics
Matches: 117, Mismatches: 13, Indels: 17
0.80 0.09 0.12
Matches are distributed among these distances:
48 31 0.26
49 11 0.09
53 1 0.01
54 62 0.53
55 10 0.09
56 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (54 bp):
GGAAATTAATACACTTAGTATGAATTTCTTAGTTTGCACACATAGTGCCCATAC
Found at i:7187951 original size:21 final size:21
Alignment explanation
Indices: 7187927--7187979 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
7187917 CACTAACTTT
7187927 CTCAAAATTTGACATTTAGTA
1 CTCAAAATTTGACATTTAGTA
7187948 CTC-AAATATTGACATTTAGTA
1 CTCAAAAT-TTGACATTTAGTA
*
7187969 CTCAAACTTTG
1 CTCAAAATTTG
7187980 CCAACTTGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 4 0.14
21 22 0.76
22 3 0.10
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (21 bp):
CTCAAAATTTGACATTTAGTA
Found at i:7191147 original size:2 final size:2
Alignment explanation
Indices: 7191140--7191172 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7191130 AAATATAATT
7191140 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7191173 GTTTTTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7191206 original size:23 final size:23
Alignment explanation
Indices: 7191161--7191219 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 23
7191151 ATATATATAT
* *
7191161 ATATATAATATAGTTTTTGAAAAG
1 ATATAT-ATATAGTTTTTAAAAAC
7191185 ATATATGATATAG-TTTTAAAAAC
1 ATATAT-ATATAGTTTTTAAAAAC
7191208 ATATTATATATA
1 ATA-TATATATA
7191220 TTATACGTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.52
24 15 0.48
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.42
Consensus pattern (23 bp):
ATATATATATAGTTTTTAAAAAC
Found at i:7191222 original size:9 final size:8
Alignment explanation
Indices: 7191208--7191274 Score: 55
Period size: 9 Copynumber: 7.6 Consensus size: 8
7191198 TTTTAAAAAC
7191208 ATATTATAT
1 ATATTAT-T
7191217 ATATTA-T
1 ATATTATT
7191224 ACGTATTATT
1 A--TATTATT
*
7191234 GTTATTATT
1 -ATATTATT
7191243 ATTATTATT
1 A-TATTATT
7191252 ATTATTATT
1 A-TATTATT
7191261 ATTATTATT
1 A-TATTATT
7191270 ATATT
1 ATATT
7191275 TTGTTTTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
7 2 0.04
8 4 0.08
9 44 0.86
10 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (8 bp):
ATATTATT
Found at i:7191241 original size:3 final size:3
Alignment explanation
Indices: 7191227--7191271 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
7191217 ATATTATACG
*
7191227 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7191272 ATTTTGTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7191938 original size:30 final size:30
Alignment explanation
Indices: 7191904--7191971 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
7191894 AGTATAATGT
*
7191904 AAGTTTAGGGACCAAAAAGGTAATTTTAAA
1 AAGTTTAGGGACAAAAAAGGTAATTTTAAA
** *
7191934 AAGTTTAAAGACAAAAAATGTAATTTTAAA
1 AAGTTTAGGGACAAAAAAGGTAATTTTAAA
7191964 AA-TTTAGG
1 AAGTTTAGG
7191972 TATTTTGACG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.50, C:0.04, G:0.16, T:0.29
Consensus pattern (30 bp):
AAGTTTAGGGACAAAAAAGGTAATTTTAAA
Found at i:7200492 original size:2 final size:2
Alignment explanation
Indices: 7200485--7200524 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7200475 TTTACCATGA
7200485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7200525 GATGTTTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7202035 original size:65 final size:64
Alignment explanation
Indices: 7201964--7202099 Score: 166
Period size: 65 Copynumber: 2.1 Consensus size: 64
7201954 ACACTAATTA
* * * *
7201964 CATTCGATTTTTCA-AAAGAGCCAAGAGTGCATCGATGCATGGTCTGTGCATCGATACATAAAAT
1 CATTCGATGTTTCATAAA-AGCCAAGAGTGCATCAATGCATGG-CGGTGCATCGATACACAAAAT
7202028 G
64 G
* *** *
7202029 CATTCGATGTTTCATTAAATTTAAGAGTGCATCAATGCATGGCGGTGCATCGATATACAAAATG
1 CATTCGATGTTTCATAAAAGCCAAGAGTGCATCAATGCATGGCGGTGCATCGATACACAAAATG
7202093 CATTCGA
1 CATTCGA
7202100 AATAGGGTGT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
64 26 0.43
65 33 0.54
66 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (64 bp):
CATTCGATGTTTCATAAAAGCCAAGAGTGCATCAATGCATGGCGGTGCATCGATACACAAAATG
Found at i:7211140 original size:10 final size:10
Alignment explanation
Indices: 7211127--7211152 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7211117 AAAAACCAAA
7211127 AAAAAAAGGC
1 AAAAAAAGGC
7211137 AAAAAAAGGC
1 AAAAAAAGGC
7211147 AAAAAA
1 AAAAAA
7211153 CAAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.08, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAGGC
Found at i:7211178 original size:19 final size:19
Alignment explanation
Indices: 7211128--7211178 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
7211118 AAAACCAAAA
* *
7211128 AAAAAAGGCAAAAAAAGGC
1 AAAAAAGCCAAAAAAAGCC
*
7211147 AAAAAA-CAAAAAAAAAGCC
1 AAAAAAGC-CAAAAAAAGCC
7211166 AAAAAAGCCAAAA
1 AAAAAAGCCAAAA
7211179 TTTCAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 25 0.96
20 1 0.04
ACGTcount: A:0.75, C:0.14, G:0.12, T:0.00
Consensus pattern (19 bp):
AAAAAAGCCAAAAAAAGCC
Found at i:7211188 original size:29 final size:29
Alignment explanation
Indices: 7211116--7211178 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 29
7211106 AAAAAATAAA
*
7211116 AAAAAACCAAAAAAAAAAGGCAAAAAAAGGC
1 AAAAAA-C-AAAAAAAAAGGCAAAAAAAGCC
*
7211147 AAAAAACAAAAAAAAA-GCCAAAAAAGCC
1 AAAAAACAAAAAAAAAGGCAAAAAAAGCC
7211175 AAAA
1 AAAA
7211179 TTTCAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 14 0.47
29 9 0.30
30 1 0.03
31 6 0.20
ACGTcount: A:0.76, C:0.14, G:0.10, T:0.00
Consensus pattern (29 bp):
AAAAAACAAAAAAAAAGGCAAAAAAAGCC
Found at i:7215837 original size:10 final size:10
Alignment explanation
Indices: 7215821--7215878 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
7215811 ATTTTTTTTT
7215821 CAAAAAAACAA
1 CAAAAAAA-AA
7215832 -AAAAAAAAA
1 CAAAAAAAAA
**
7215841 CAAAAAAAGG
1 CAAAAAAAAA
**
7215851 CAAAAAAAGG
1 CAAAAAAAAA
7215861 C--AAAAAAA
1 CAAAAAAAAA
7215869 CAAAAAAAAA
1 CAAAAAAAAA
7215879 GCCAAAAAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 6 0.15
9 2 0.05
10 32 0.80
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:7215839 original size:12 final size:12
Alignment explanation
Indices: 7215822--7215848 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7215812 TTTTTTTTTC
7215822 AAAAAAACAAAA
1 AAAAAAACAAAA
7215834 AAAAAAACAAAA
1 AAAAAAACAAAA
7215846 AAA
1 AAA
7215849 GGCAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAACAAAA
Found at i:7215879 original size:20 final size:20
Alignment explanation
Indices: 7215821--7215887 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
7215811 ATTTTTTTTT
*
7215821 CAAAAAAACAAAAAAAAAAA
1 CAAAAAAACAAAAAAAAAGA
*** *
7215841 CAAAAAAAGGCAAAAAAAGG
1 CAAAAAAACAAAAAAAAAGA
*
7215861 CAAAAAAACAAAAAAAAAGC
1 CAAAAAAACAAAAAAAAAGA
7215881 CAAAAAA
1 CAAAAAA
7215888 GCCAAAATTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.81, C:0.12, G:0.07, T:0.00
Consensus pattern (20 bp):
CAAAAAAACAAAAAAAAAGA
Found at i:7215885 original size:10 final size:10
Alignment explanation
Indices: 7215841--7215894 Score: 58
Period size: 10 Copynumber: 5.5 Consensus size: 10
7215831 AAAAAAAAAA
*
7215841 CAAAAAAAGG
1 CAAAAAAAGC
*
7215851 CAAAAAAAGG
1 CAAAAAAAGC
7215861 CAAAAAAA-C
1 CAAAAAAAGC
*
7215870 AAAAAAAAAGC
1 -CAAAAAAAGC
7215881 C-AAAAAAGC
1 CAAAAAAAGC
7215890 CAAAA
1 CAAAA
7215895 TTTCAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
9 9 0.24
10 28 0.74
11 1 0.03
ACGTcount: A:0.74, C:0.15, G:0.11, T:0.00
Consensus pattern (10 bp):
CAAAAAAAGC
Found at i:7215894 original size:20 final size:20
Alignment explanation
Indices: 7215832--7215894 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
7215822 AAAAAAACAA
* * *
7215832 AAAAAAAAACAAAAAAAGGC
1 AAAAAAAAGCCAAAAAAGCC
* * *
7215852 -AAAAAAAGGCAAAAAAACA
1 AAAAAAAAGCCAAAAAAGCC
7215871 AAAAAAAAGCCAAAAAAGCC
1 AAAAAAAAGCCAAAAAAGCC
7215891 AAAA
1 AAAA
7215895 TTTCAAAAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 13 0.39
20 20 0.61
ACGTcount: A:0.78, C:0.13, G:0.10, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGCCAAAAAAGCC
Found at i:7215904 original size:29 final size:29
Alignment explanation
Indices: 7215834--7215894 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
7215824 AAAAACAAAA
* *
7215834 AAAAAAAC-AAAAAAAGGCAAAAAAAGGC
1 AAAAAAACAAAAAAAAAGCAAAAAAAGCC
*
7215862 AAAAAAACAAAAAAAAAGCCAAAAAAGCC
1 AAAAAAACAAAAAAAAAGCAAAAAAAGCC
7215891 AAAA
1 AAAA
7215895 TTTCAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.77, C:0.13, G:0.10, T:0.00
Consensus pattern (29 bp):
AAAAAAACAAAAAAAAAGCAAAAAAAGCC
Found at i:7220563 original size:8 final size:9
Alignment explanation
Indices: 7220548--7220583 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
7220538 TTCTTTTTTT
7220548 CAAAAAAAC
1 CAAAAAAAC
7220557 CAAAAAAAC
1 CAAAAAAAC
*
7220566 CAAAAAAAGG
1 CAAAAAAA-C
7220576 CAAAAAAA
1 CAAAAAAA
7220584 AAAGCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.78, C:0.17, G:0.06, T:0.00
Consensus pattern (9 bp):
CAAAAAAAC
Found at i:7220596 original size:22 final size:22
Alignment explanation
Indices: 7220558--7220602 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
7220548 CAAAAAAACC
*
7220558 AAAAAAACCAAAAAAAGGCAAA
1 AAAAAAACCAAAAAAAGCCAAA
7220580 AAAAAAAGCC-AAAAAAGCCAAA
1 AAAAAAA-CCAAAAAAAGCCAAA
7220602 A
1 A
7220603 TTTCAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.76, C:0.16, G:0.09, T:0.00
Consensus pattern (22 bp):
AAAAAAACCAAAAAAAGCCAAA
Found at i:7225915 original size:18 final size:18
Alignment explanation
Indices: 7225892--7225931 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7225882 TCAAGAGTGG
* *
7225892 ATCGATGCATGGTTGTGC
1 ATCGATGCATGGCTGTAC
7225910 ATCGATGCATGGCTGTAC
1 ATCGATGCATGGCTGTAC
7225928 ATCG
1 ATCG
7225932 GTACACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (18 bp):
ATCGATGCATGGCTGTAC
Found at i:7227225 original size:81 final size:81
Alignment explanation
Indices: 7227085--7227408 Score: 450
Period size: 81 Copynumber: 4.0 Consensus size: 81
7227075 TTTTTTTTCC
* ** * * * * * *
7227085 CAAAGGCATTTAGTCTTTCATCTAACTTGCATGATTGACACTTTTCTTCCAAATACACAGCTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGG
7227150 CCATTAATATTTTACT
66 CCATTAATATTTTACT
*
7227166 CAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGG
7227231 CCATTAATATTTTACT
66 CCATTAATATTTTACT
* * *
7227247 CAAATGTATTTAACCTTTCATCTAACTGGCGTAATTGACATCTTTCTGCCAAATGCACAACTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGG
* *
7227312 ACATTAATCTTTTACT
66 CCATTAATATTTTACT
* * * * *
7227328 CAAAGGTATTTAACCTTTCATCTAACTGACATAATTGACATCTTTCTACCAAATTCACAACTATG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGG
* *
7227393 CCTTTAATTTTTTACT
66 CCATTAATATTTTACT
7227409 TTAGAACTGT
Statistics
Matches: 220, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 220 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (81 bp):
CAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAACTAGG
CCATTAATATTTTACT
Found at i:7227634 original size:16 final size:16
Alignment explanation
Indices: 7227613--7227643 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7227603 GTGCCATTTG
7227613 GTAATCACCATACATA
1 GTAATCACCATACATA
7227629 GTAATCACCATACAT
1 GTAATCACCATACAT
7227644 TTATAACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26
Consensus pattern (16 bp):
GTAATCACCATACATA
Found at i:7233272 original size:81 final size:81
Alignment explanation
Indices: 7232654--7233265 Score: 849
Period size: 81 Copynumber: 7.6 Consensus size: 81
7232644 AATACTTTAG
* * ** * * *
7232654 TCTTTTACCCAAAGGCATTTAGTCTTTCATCTAACTTGCATGATTGACACTTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7232719 ACAGCTAGGTCATTAA
66 ACAGCTAGGCCATTAA
*
7232735 TCTTTTACTCAAAGGTATTTAACCTCTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* * * *
7232800 ACATCCAGTCTATTAA
66 ACAGCTAGGCCATTAA
* * * * *
7232816 TATTTTACTCAAA-G---CTAACCTTTCATTTAACTGGCATGATTGACACCTTTCTGCCAAATGT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
7232877 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * *
7232893 TCTTTTACTCAAAGATATTTAACGTTTCATCTAACTGGCATAACTGACAACTTTCTTCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* *
7232958 ACATCTAGGCTATTAA
66 ACAGCTAGGCCATTAA
* * *
7232974 TCTTTTACTCAAAGGTATTTAACCTTTCATCGAACTGGCATAATTGACACCTTTGTGCCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7233039 ACAACTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* *
7233055 TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGAATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
7233120 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* *
7233136 -CATTTTACTCAAATGTATTTAACCTTTCATTTAACTGGCATAATTGACACCTTTCTGCCAAATG
1 TC-TTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATG
7233200 CACAGCTAGGCCATTAA
65 CACAGCTAGGCCATTAA
* *
7233217 -CATTTTACTCAAATGTATTTAACCTTTCATTTAACTGGCATAATTGACA
1 TC-TTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA
7233266 TATTTCTTCC
Statistics
Matches: 471, Mismatches: 55, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
77 66 0.14
80 2 0.00
81 403 0.86
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (81 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
ACAGCTAGGCCATTAA
Found at i:7233357 original size:105 final size:105
Alignment explanation
Indices: 7233173--7233377 Score: 315
Period size: 105 Copynumber: 2.0 Consensus size: 105
7233163 CATTTAACTG
* * *
7233173 GCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAACATTTTACTCAAATGTATTTA
1 GCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAACATTTTACTCAAAGGTATTTA
* *
7233238 ACCTTTCATTTAACTGGCATAATTGACATATTTCTTCCTA
66 ACATTTCATTTAACTGGCATAATTGACACATTTCTTCCTA
*
7233278 GCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAATC-TTTTACTTAAAGGTATTT
1 GCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAA-CATTTTACTCAAAGGTATTT
*
7233342 AACATTT-TTTCTAACTGGCATAATTGACACATTTCT
65 AACATTTCATT-TAACTGGCATAATTGACACATTTCT
7233378 ACCAAATGCA
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
104 2 0.02
105 88 0.97
106 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (105 bp):
GCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAACATTTTACTCAAAGGTATTTA
ACATTTCATTTAACTGGCATAATTGACACATTTCTTCCTA
Found at i:7233405 original size:81 final size:81
Alignment explanation
Indices: 7233278--7233447 Score: 277
Period size: 81 Copynumber: 2.1 Consensus size: 81
7233268 TTTCTTCCTA
* * * *
7233278 GCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAATCTTTTACTTAAAGGTATTTA
1 GCATAATTGACACATTTCTACCAAATGCACAACTAGACCATGAATCTTTTACATAAAGGTATTTA
**
7233343 ACATTTTTTCTAACTG
66 ACATTTCATCTAACTG
*
7233359 GCATAATTGACACATTTCTACCAAATGCACAACTAGACCATTAATCTTTTACATAAAGGTATTTA
1 GCATAATTGACACATTTCTACCAAATGCACAACTAGACCATGAATCTTTTACATAAAGGTATTTA
7233424 ACATTTCATCTAACTG
66 ACATTTCATCTAACTG
7233440 GCATAATT
1 GCATAATT
7233448 TACTTGGGTT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (81 bp):
GCATAATTGACACATTTCTACCAAATGCACAACTAGACCATGAATCTTTTACATAAAGGTATTTA
ACATTTCATCTAACTG
Found at i:7233423 original size:186 final size:186
Alignment explanation
Indices: 7233094--7233447 Score: 527
Period size: 186 Copynumber: 1.9 Consensus size: 186
7233084 TCTAACTGGA
* * *
7233094 ATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAACATTTTACTCAAATGTATTTAAC
1 ATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAACATTTTACTCAAAGGTATTTAAC
* * * * *
7233159 CTTTCATTTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTAACATTTTA
66 ATTTCATTTAACTGGCATAATTGACACATTTCTACCAAATGCACAACTAGACCATTAACATTTTA
* * *
7233224 CTCAAATGTATTTAACCTTTCATTTAACTGGCATAATTGACATATTTCTTCCTAGC
131 CTCAAAGGTATTTAACATTTCATCTAACTGGCATAATTGACATATTTCTTCCTAGC
*
7233280 ATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAATC-TTTTACTTAAAGGTATTTAA
1 ATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAA-CATTTTACTCAAAGGTATTTAA
*
7233344 CATTT-TTTCTAACTGGCATAATTGACACATTTCTACCAAATGCACAACTAGACCATTAATC-TT
65 CATTTCATT-TAACTGGCATAATTGACACATTTCTACCAAATGCACAACTAGACCATTAA-CATT
7233407 TTACAT-AAAGGTATTTAACATTTCATCTAACTGGCATAATT
128 TTAC-TCAAAGGTATTTAACATTTCATCTAACTGGCATAATT
7233448 TACTTGGGTT
Statistics
Matches: 151, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
185 2 0.01
186 146 0.97
187 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (186 bp):
ATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATGAACATTTTACTCAAAGGTATTTAAC
ATTTCATTTAACTGGCATAATTGACACATTTCTACCAAATGCACAACTAGACCATTAACATTTTA
CTCAAAGGTATTTAACATTTCATCTAACTGGCATAATTGACATATTTCTTCCTAGC
Found at i:7235948 original size:23 final size:22
Alignment explanation
Indices: 7235908--7235950 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7235898 ACCATTGTAA
*
7235908 TTATTTTATTTTATTTATTTAT
1 TTATTTTATTTTAGTTATTTAT
*
7235930 TTATTATTCTTTTAGTTATTT
1 TTATT-TTATTTTAGTTATTT
7235951 TCTTTTCCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTATTTTATTTTAGTTATTTAT
Found at i:7237227 original size:6 final size:6
Alignment explanation
Indices: 7237216--7237259 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
7237206 AACAAGATAC
* * * *
7237216 ACATAT ACATAT ACGTAT ACGTAT TCATAT ACATAT AGATAT AC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC
7237260 GTATCAGTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (6 bp):
ACATAT
Found at i:7237249 original size:24 final size:24
Alignment explanation
Indices: 7237217--7237263 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
7237207 ACAAGATACA
7237217 CATATACATATACG-TATACGTATT
1 CATATACATATA-GATATACGTATT
7237241 CATATACATATAGATATACGTAT
1 CATATACATATAGATATACGTAT
7237264 CAGTAGATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (24 bp):
CATATACATATAGATATACGTATT
Found at i:7238236 original size:6 final size:6
Alignment explanation
Indices: 7238225--7241902 Score: 4986
Period size: 6 Copynumber: 613.7 Consensus size: 6
7238215 AGTGGGTTAC
*
7238225 ACATAT ACATAT GCATAT ACATAT ACATAT ACATAT ACATAT ACATATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC--ATAT
7238275 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238323 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238371 ACATAT AC--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238417 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238465 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238513 ACATACAT ACATAT AC--AT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACAT--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238561 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238609 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238657 ACATAT ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * *
7238703 ACATAT ACATAT AC--AT ACATAT ACATAG ACATAGAT GCATAT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACAT--AT ACATAT ACATAT
* * * * * * *
7238751 GCATAT GCATAT GCATAT GCATAT GCATAT CCATAT CCATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * *
7238799 CCATAT CCATAT ACATAT CCATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238847 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238895 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238943 ACATATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 AC--ATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7238993 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239041 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239089 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
7239137 ACATAT ACATAT ACATAT GCATAT GCATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * *
7239185 ACATAT ACATAT ACATAT GCATAT GCATAT GCATAT GCATAT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * *
7239233 ACATAT GCATAT GC--AT GCATAT GCATAT GCATAT GCATAT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
7239279 GCATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239327 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239375 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239423 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239471 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239519 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239567 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239615 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239663 ACATAT ACATACAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACAT--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239713 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239761 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239807 ACATAT ACATACAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACAT--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * *
7239857 ACATAG ACATAG ACATAGAT GCATAT ATGCATAT GCATAT GCATAT GCATAT
1 ACATAT ACATAT ACAT--AT ACATAT A--CATAT ACATAT ACATAT ACATAT
* * * * *
7239909 GCATAT CCATAT --ATAT ACATAT CCATAT CCATAT ACATAT CCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7239955 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240003 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240051 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240099 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
7240147 ACATAT ACATAT ACATAT ACATAT -CCTAT AC--AT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240192 CCACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 --ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240242 ACATAT ACATATAT ACATAT ACATAT ACATATAT ACATAT ACATAT ACATAT
1 ACATAT AC--ATAT ACATAT ACATAT AC--ATAT ACATAT ACATAT ACATAT
* *
7240294 GC--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT CCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * *
7240340 GCATAT GCATAT GCATAT GCATAT ACATAT GCATAT GC--AT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * ** * * * * *
7240386 GCATAT GCATAT GTATAT GCATAT GCATAT GCATAT GCATAT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240434 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240482 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240530 AC--AT ACATAT ACATAT AC--AT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240574 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240622 ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7240668 ACGTAT ACGTAT ACGTAT ACGTAT ACGTAT ACGTAT ACGTAT ACGTAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
7240716 ACGTAT AC-TAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240763 ACATAT ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240809 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240857 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7240905 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
7240953 ACATAT ACATAT CCATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
7241001 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
7241049 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAGAT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACAT--AT ACATAT
* * * * * * * *
7241099 GCATAT GCATAT GCATAT GCATAT GCATAT GCATAT CCATAT CCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * *
7241147 ACATAT CCATAT CCATAT ACATAT ACATAT ACATAT ACATAT ACCCATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT A--CATAT
* * * * * * * * * * * * * *
7241197 GCATAC CCATAC GCATAC CCATAC GCATAT CCATAC ACATAC GCATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * * * * * * *
7241245 GCATAC CCATAC GCATAC CCATAC GCATAT CCATAC ACATAT CCATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * *
7241293 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAT CCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * * * * *
7241341 CCATAT ACATAT CCATAT CCATAT GCATAC GCATAC GCATAC GCATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * * * *
7241389 GCATAC CCATAC ACATAT CCATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241437 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * * *
7241485 ACATAC ATATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241533 ACATAC ACATAC ACATAC ACACAT ACACAT ACACAT ACACAT ACACAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241581 ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241629 ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241677 ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241725 ACACAT ACACAT ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241773 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * * * * *
7241821 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * *
7241869 ACATAC ACATAC ACATAC ACATAC ACATAC ACAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACAT
7241903 CACTATGACT
Statistics
Matches: 3530, Mismatches: 86, Indels: 112
0.95 0.02 0.03
Matches are distributed among these distances:
4 55 0.02
5 9 0.00
6 3396 0.96
8 70 0.02
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (6 bp):
ACATAT
Found at i:7247928 original size:22 final size:22
Alignment explanation
Indices: 7247880--7247951 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
7247870 TATATATATA
*
7247880 ATAT-ATATAGTCTTTTCAAATAT
1 ATATAATATAGT-TTTTGAAA-AT
*
7247903 ATATAATATAGTTTTTGAAAAC
1 ATATAATATAGTTTTTGAAAAT
**
7247925 ATATTGTAT-GCTTTTTGAAAAT
1 ATATAATATAG-TTTTTGAAAAT
7247947 ATATA
1 ATATA
7247952 TAATATATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
21 1 0.02
22 22 0.54
23 11 0.27
24 7 0.17
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (22 bp):
ATATAATATAGTTTTTGAAAAT
Found at i:7247928 original size:24 final size:23
Alignment explanation
Indices: 7247875--7247958 Score: 75
Period size: 24 Copynumber: 3.6 Consensus size: 23
7247865 AAAACTATAT
*
7247875 ATATAATATATATAGTCTTTT-CAA
1 ATAT-ATATATATAGT-TTTTGAAA
7247899 ATATATATAATATAGTTTTTGAAA
1 ATATATAT-ATATAGTTTTTGAAA
* *
7247923 ACATAT-TGTAT-GCTTTTTGAAA
1 ATATATATATATAG-TTTTTGAAA
7247945 ATATATATAATATA
1 ATATATAT-ATATA
7247959 TATTATATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
21 1 0.02
22 17 0.35
23 10 0.20
24 21 0.43
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (23 bp):
ATATATATATATAGTTTTTGAAA
Found at i:7249733 original size:59 final size:59
Alignment explanation
Indices: 7249661--7249783 Score: 219
Period size: 59 Copynumber: 2.1 Consensus size: 59
7249651 CAAATTTGAC
*
7249661 AATTCTCTGGTAAGACGCAAATATGGTAAATGGTAAAAAAGGAGGTGTCTGATCTACCT
1 AATTCTCTGGTAAGACGCAAATATGGTAAATGGCAAAAAAGGAGGTGTCTGATCTACCT
**
7249720 AATTCTCTGGTAAGACGTGAATATGGTAAATGGCAAAAAAGGAGGTGTCTGATCTACCT
1 AATTCTCTGGTAAGACGCAAATATGGTAAATGGCAAAAAAGGAGGTGTCTGATCTACCT
7249779 AATTC
1 AATTC
7249784 AAAAATGATC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.28
Consensus pattern (59 bp):
AATTCTCTGGTAAGACGCAAATATGGTAAATGGCAAAAAAGGAGGTGTCTGATCTACCT
Found at i:7252555 original size:16 final size:18
Alignment explanation
Indices: 7252521--7252556 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
7252511 ACCTTCAAAT
7252521 TTCTTCATTCATCGGATG
1 TTCTTCATTCATCGGATG
7252539 TTCTTC-TTCAT-GGATG
1 TTCTTCATTCATCGGATG
7252555 TT
1 TT
7252557 ATATGGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 5 0.28
18 6 0.33
ACGTcount: A:0.14, C:0.19, G:0.17, T:0.50
Consensus pattern (18 bp):
TTCTTCATTCATCGGATG
Found at i:7256883 original size:83 final size:83
Alignment explanation
Indices: 7256663--7257130 Score: 714
Period size: 83 Copynumber: 5.7 Consensus size: 83
7256653 AACAAGTCAA
*
7256663 AGCTTAAATTAA-GAAACAAGTGG-GAAAACAAATAGTATAATGATTCCATATATATTATAATCA
1 AGCTTAAATTAAGGAAACAAGTGGAG-AAACAAATATTATAATGATTCCATATATATTATAATCA
7256726 ATAAAAACTAAA-CACCATACGT
65 ATAAAAACTAAACCA-C-TA--T
* * * *
7256748 GGCTTAAATTAGGGAAACAAGTAGAGAAATAAATATTATAATGATTCCATATATATTATAATCAA
1 AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTCCATATATATTATAATCAA
*
7256813 TAAAAACTAAACCACTAA
66 TAAAAACTAAACCACTAT
* * * *
7256831 AGCTTAAATTAAGGAAACAAGTGGATAATCAAATATTATGATGATTCTATATATATTATAATCAA
1 AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTCCATATATATTATAATCAA
7256896 TAAAAACTAAACCACTAT
66 TAAAAACTAAACCACTAT
* *
7256914 AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTCTATATGTATTATAATCAA
1 AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTCCATATATATTATAATCAA
7256979 TAAAAACTAAACCACTAT
66 TAAAAACTAAACCACTAT
*
7256997 AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTTCATATATATTATAAT---
1 AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTCCATATATATTATAATCAA
7257059 TAAAAACTAAACCACTAT
66 TAAAAACTAAACCACTAT
* *
7257077 AGCTTAAATTAAGGAAACAAATAGAGAAACAAATATTATAATGATTCCATATAT
1 AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTCCATATAT
7257131 TAAAAAAAAG
Statistics
Matches: 355, Mismatches: 25, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
80 69 0.19
83 212 0.60
85 12 0.03
86 59 0.17
87 3 0.01
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.29
Consensus pattern (83 bp):
AGCTTAAATTAAGGAAACAAGTGGAGAAACAAATATTATAATGATTCCATATATATTATAATCAA
TAAAAACTAAACCACTAT
Found at i:7258562 original size:3 final size:3
Alignment explanation
Indices: 7258554--7258588 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
7258544 ATATACACAT
7258554 TAA TAA TAA TAA T-A TATA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TA
7258589 TTTAGGATGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:7258568 original size:21 final size:21
Alignment explanation
Indices: 7258535--7258589 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
7258525 GTAATCTGTA
*
7258535 AATATATATATATACACATTAAT
1 AATA-ATA-ATATACACAATAAT
* *
7258558 AATAATAATATATATAATAAT
1 AATAATAATATACACAATAAT
7258579 AATAATAATAT
1 AATAATAATAT
7258590 TTAGGATGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 22 0.76
22 3 0.10
23 4 0.14
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
AATAATAATATACACAATAAT
Found at i:7263176 original size:31 final size:31
Alignment explanation
Indices: 7263137--7263207 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
7263127 ACTTTTAAAA
* *
7263137 CTTGCAATACAGTCCCCCAACATTTAGTTCG
1 CTTGCAATACAATCCCCCAACATTTAGTCCG
* *
7263168 TTTGCAATACAATCCTCCAACATTTAGTCCG
1 CTTGCAATACAATCCCCCAACATTTAGTCCG
7263199 CTTGCAATA
1 CTTGCAATA
7263208 TGATCCCCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (31 bp):
CTTGCAATACAATCCCCCAACATTTAGTCCG
Found at i:7267371 original size:30 final size:29
Alignment explanation
Indices: 7267336--7267411 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
7267326 TAAATTTTAA
* *
7267336 AAATATCTAATATTTTTGTCTTAACTTATT
1 AAATATATAATATTTTT-TCTTAACTTACT
**
7267366 AAATATATTTTATTTTTTCTTAACTTACT
1 AAATATATAATATTTTTTCTTAACTTACT
**
7267395 AAATATATTTTATTTTT
1 AAATATATAATATTTTT
7267412 ATTTTAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 28 0.67
30 14 0.33
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (29 bp):
AAATATATAATATTTTTTCTTAACTTACT
Found at i:7267391 original size:29 final size:28
Alignment explanation
Indices: 7267346--7267490 Score: 118
Period size: 29 Copynumber: 5.0 Consensus size: 28
7267336 AAATATCTAA
7267346 TATTTTTGTCTTAACTTATTAAATATATTT
1 TATTTTT-TCTTAACTTA-TAAATATATTT
7267376 TATTTTTTCTTAACTTACTAAATATATTT
1 TATTTTTTCTTAACTTA-TAAATATATTT
*
7267405 TATTTTTATTTTAA--TAT--ATATATTT
1 TATTTTT-TCTTAACTTATAAATATATTT
* * * *
7267430 TATCTTTATCTTCACTTAAAAATAAATTT
1 TAT-TTTTTCTTAACTTATAAATATATTT
* * *
7267459 TATTCTTATCTTAATTTTTCAAAATATATTT
1 TATT-TTTTCTTAACTTAT--AAATATATTT
7267490 T
1 T
7267491 CAAAATATTT
Statistics
Matches: 94, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
25 15 0.16
26 3 0.03
27 3 0.03
28 3 0.03
29 48 0.51
30 12 0.13
31 10 0.11
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.59
Consensus pattern (28 bp):
TATTTTTTCTTAACTTATAAATATATTT
Found at i:7267430 original size:54 final size:54
Alignment explanation
Indices: 7267354--7267473 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
7267344 AATATTTTTG
* * * * * *
7267354 TCTTAACTTATTAAATATATTTTAT-TTTTTCTTAACTTACTAAATATATTTTAT
1 TCTTATCTTAATATATATATTTTATCTTTATCTTAACTTA-AAAATAAATTTTAT
* * *
7267408 TTTTATTTTAATATATATATTTTATCTTTATCTTCACTTAAAAATAAATTTTAT
1 TCTTATCTTAATATATATATTTTATCTTTATCTTAACTTAAAAATAAATTTTAT
7267462 TCTTATCTTAAT
1 TCTTATCTTAAT
7267474 TTTTCAAAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
54 42 0.78
55 12 0.22
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.57
Consensus pattern (54 bp):
TCTTATCTTAATATATATATTTTATCTTTATCTTAACTTAAAAATAAATTTTAT
Found at i:7267501 original size:11 final size:13
Alignment explanation
Indices: 7267474--7267498 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7267464 TTATCTTAAT
7267474 TTTTCAAAATATA
1 TTTTCAAAATATA
7267487 TTTTCAAAATAT
1 TTTTCAAAATAT
7267499 TTTAACTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTCAAAATATA
Found at i:7267536 original size:36 final size:33
Alignment explanation
Indices: 7267496--7267583 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 33
7267486 ATTTTCAAAA
7267496 TATTTTAACTTAAAATATATTTAAATATTTTATTAT
1 TATTTTAACTTAAAA-ATATTT--ATATTTTATTAT
*
7267532 TATTTTAA-TATAAAAATA--TATATTTTATTCT
1 TATTTTAACT-TAAAAATATTTATATTTTATTAT
* *
7267563 TATCTTCACTTAAAAATATTT
1 TATTTTAACTTAAAAATATTT
7267584 TTTCATATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
31 25 0.56
32 1 0.02
33 2 0.04
35 4 0.09
36 13 0.29
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (33 bp):
TATTTTAACTTAAAAATATTTATATTTTATTAT
Found at i:7267577 original size:31 final size:31
Alignment explanation
Indices: 7267354--7267581 Score: 108
Period size: 29 Copynumber: 7.5 Consensus size: 31
7267344 AATATTTTTG
** *
7267354 TCTTAACTTATTAA-ATATATTTTATT-TTT
1 TCTTAACTTAAAAATATATATTTTATTCTTA
**
7267383 TCTTAACTTACTAA-ATATATTTTATT-TT-
1 TCTTAACTTAAAAATATATATTTTATTCTTA
* *
7267411 TATT---TT-AATATATATATTTTA-TCTTTA
1 TCTTAACTTAAAAATATATATTTTATTC-TTA
*
7267438 TCTTCACTTAAAAATA-A-ATTTTATTCTTA
1 TCTTAACTTAAAAATATATATTTTATTCTTA
* * * ***
7267467 TCTTAATTTTTCAAAATATAT-TTTCA-AAATA
1 TCTTAA--CTTAAAAATATATATTTTATTCTTA
* *
7267498 TTTTAACTTAAAATATATTTAAATATTTTATTATTA
1 TCTTAACTTAAAA-ATA--T--ATATTTTATTCTTA
*
7267534 TTTTAA-TATAAAAATATATATTTTATTCTTA
1 TCTTAACT-TAAAAATATATATTTTATTCTTA
*
7267565 TCTTCACTTAAAAATAT
1 TCTTAACTTAAAAATAT
7267582 TTTTTCATAT
Statistics
Matches: 154, Mismatches: 23, Indels: 42
0.70 0.11 0.19
Matches are distributed among these distances:
24 2 0.01
25 12 0.08
26 2 0.01
27 3 0.02
28 3 0.02
29 46 0.30
30 8 0.05
31 46 0.30
32 7 0.05
33 1 0.01
34 2 0.01
35 8 0.05
36 14 0.09
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (31 bp):
TCTTAACTTAAAAATATATATTTTATTCTTA
Found at i:7267660 original size:127 final size:124
Alignment explanation
Indices: 7267394--7267644 Score: 267
Period size: 127 Copynumber: 2.0 Consensus size: 124
7267384 CTTAACTTAC
* * * *
7267394 TAAATA-TATT-TTATTTTTATTTTAATATATATATTTTATCTTTATCTTCACTTAAAAATAAAT
1 TAAATATTATTATTATTTTAATATAAAAATATATATTTTATCTTTATCTTCACTTAAAAATAAAT
* *
7267457 TTTATTCTTATCTTAATTTTTCAAAATATATTTTCAAAATATTTTAACTTAAAATATATT
66 TTTATTATTATCTTAATTTTTCAAAATATATTTT-AAAATATCTTAACTTAAAATATATT
7267517 TAAATATTTTATTATTATTTTAATATAAAAATATATATTTTAT-TCTTATCTTCACTTAAAAATA
1 TAAATA--TTATTATTATTTTAATATAAAAATATATATTTTATCT-TTATCTTCACTTAAAAATA
** * * * * *
7267581 TTTTTTCATATATTTTCATTCCTATTTTTTAAAATATATTTT-TATTATCTTAACTTTAAAATAT
63 AATTTT-AT-TATTATC-TT--AATTTTTCAAAATATATTTTAAAATATCTTAAC-TTAAAATAT
7267645 TTTTTAAAAT
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
123 6 0.06
126 5 0.05
127 48 0.46
128 2 0.02
129 5 0.05
130 11 0.11
131 9 0.09
132 18 0.17
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (124 bp):
TAAATATTATTATTATTTTAATATAAAAATATATATTTTATCTTTATCTTCACTTAAAAATAAAT
TTTATTATTATCTTAATTTTTCAAAATATATTTTAAAATATCTTAACTTAAAATATATT
Found at i:7267767 original size:80 final size:78
Alignment explanation
Indices: 7267683--7267843 Score: 200
Period size: 78 Copynumber: 2.0 Consensus size: 78
7267673 ATTTTTAATT
* * * * * *
7267683 TAAGAATAAAATATAT-TTTAAGT-ACAAATATTTTTAAAATATTTTTTAAAAGTTAATATATAT
1 TAAGAATAAAATATATGTTTAAATGA-AAATAATATTAAAATATATTTT--AA-TTAAAATAAAT
*
7267746 ATATTTTTAAGTTAAAA
62 ATATTTATAAGTTAAAA
*
7267763 TAAGAATAAAATATATGTTTAAATGAAAATAATATTAACATATATTTTAATTAAAATAAATATAT
1 TAAGAATAAAATATATGTTTAAATGAAAATAATATTAAAATATATTTTAATTAAAATAAATATAT
7267828 TTATAAGTTAAAA
66 TTATAAGTTAAAA
7267841 TAA
1 TAA
7267844 AAGATATTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 28 0.39
79 2 0.03
80 16 0.23
81 24 0.34
82 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.05, T:0.42
Consensus pattern (78 bp):
TAAGAATAAAATATATGTTTAAATGAAAATAATATTAAAATATATTTTAATTAAAATAAATATAT
TTATAAGTTAAAA
Found at i:7267776 original size:29 final size:28
Alignment explanation
Indices: 7267744--7267821 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
7267734 GTTAATATAT
7267744 ATATATTTTTAAGTTAAAATAAGAATAAA
1 ATATATTTTTAA-TTAAAATAAGAATAAA
* * * * *
7267773 ATATATGTTTAAATGAAAATAATATTAAC
1 ATATAT-TTTTAATTAAAATAAGAATAAA
7267802 ATATA-TTTTAATTAAAATAA
1 ATATATTTTTAATTAAAATAA
7267822 ATATATTTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
27 13 0.32
29 23 0.56
30 5 0.12
ACGTcount: A:0.54, C:0.01, G:0.05, T:0.40
Consensus pattern (28 bp):
ATATATTTTTAATTAAAATAAGAATAAA
Found at i:7267838 original size:22 final size:20
Alignment explanation
Indices: 7267802--7267844 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 20
7267792 TAATATTAAC
7267802 ATATATTTTAATTAAAATAA
1 ATATATTTTAATTAAAATAA
7267822 ATATATTTATAAGTTAAAATAA
1 ATATATTT-TAA-TTAAAATAA
7267844 A
1 A
7267845 AGATATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.38
21 3 0.14
22 10 0.48
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
ATATATTTTAATTAAAATAA
Found at i:7267863 original size:25 final size:22
Alignment explanation
Indices: 7267804--7267852 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
7267794 ATATTAACAT
*
7267804 ATATTT-TAA-TTAAAATAAAT
1 ATATTTATAAGTTAAAATAAAG
7267824 ATATTTATAAGTTAAAATAAAAG
1 ATATTTATAAGTTAAAAT-AAAG
7267847 ATATTT
1 ATATTT
7267853 TTAAAGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 6 0.24
21 3 0.12
22 7 0.28
23 9 0.36
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
ATATTTATAAGTTAAAATAAAG
Found at i:7270154 original size:19 final size:19
Alignment explanation
Indices: 7270110--7270154 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
7270100 AATTAAAGAT
7270110 AATTTGATTTTGAAAGCAA
1 AATTTGATTTTGAAAGCAA
*
7270129 AAGTTGATTTTGAAAGCAA
1 AATTTGATTTTGAAAGCAA
*
7270148 ATTTTGA
1 AATTTGA
7270155 AAAATAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (19 bp):
AATTTGATTTTGAAAGCAA
Found at i:7274358 original size:31 final size:30
Alignment explanation
Indices: 7274320--7274412 Score: 123
Period size: 31 Copynumber: 3.0 Consensus size: 30
7274310 TACTAGGTTG
* * *
7274320 GGTGCATTTAGATAATGCACAATATGGTCTT
1 GGTGCATTCATATAATGCACAATATGGTC-A
7274351 GGTGCATTCATATAATGCACAATATGGTCA
1 GGTGCATTCATATAATGCACAATATGGTCA
* *
7274381 GCTTGCATTCATATAATGCACATTATGGTCA
1 G-GTGCATTCATATAATGCACAATATGGTCA
7274412 G
1 G
7274413 ATTGTATTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
30 1 0.02
31 55 0.98
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (30 bp):
GGTGCATTCATATAATGCACAATATGGTCA
Found at i:7274428 original size:31 final size:31
Alignment explanation
Indices: 7274322--7274431 Score: 114
Period size: 31 Copynumber: 3.5 Consensus size: 31
7274312 CTAGGTTGGG
* * *
7274322 TGCATTTAGATAATGCACAATATGGTCTTG-G
1 TGCATTAAGATAATGCACAATATGGTC-AGAT
* * *
7274353 TGCATTCATATAATGCACAATATGGTCAGCT
1 TGCATTAAGATAATGCACAATATGGTCAGAT
* * *
7274384 TGCATTCATATAATGCACATTATGGTCAGAT
1 TGCATTAAGATAATGCACAATATGGTCAGAT
*
7274415 TGTATTAAGATAATGCA
1 TGCATTAAGATAATGCA
7274432 TAACAGTGTC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
30 1 0.01
31 68 0.99
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.35
Consensus pattern (31 bp):
TGCATTAAGATAATGCACAATATGGTCAGAT
Found at i:7295017 original size:1 final size:1
Alignment explanation
Indices: 7295013--7295064 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
7295003 AAATTTTGGC
* * * * * *
7295013 TTTTTTGTTTTTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7295065 GAAAAAAATA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (1 bp):
T
Found at i:7295023 original size:7 final size:7
Alignment explanation
Indices: 7295013--7295061 Score: 80
Period size: 7 Copynumber: 6.9 Consensus size: 7
7295003 AAATTTTGGC
7295013 TTTTTTG
1 TTTTTTG
*
7295020 TTTTTTT
1 TTTTTTG
7295027 TTTTTTG
1 TTTTTTG
7295034 TTTTTTG
1 TTTTTTG
7295041 TTTTTTG
1 TTTTTTG
7295048 TTTTTTG
1 TTTTTTG
7295055 TTATTTT
1 TT-TTTT
7295062 TTTGAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 35 0.90
8 4 0.10
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:7299751 original size:12 final size:12
Alignment explanation
Indices: 7299734--7299797 Score: 92
Period size: 12 Copynumber: 5.2 Consensus size: 12
7299724 AAATTTTGGC
7299734 TTTTTTGTTTTT
1 TTTTTTGTTTTT
7299746 TTTTTTGTTTTT
1 TTTTTTGTTTTT
*
7299758 TTTTTTTTTTTT
1 TTTTTTGTTTTT
*
7299770 TTTGTTTTTTTTT
1 TTT-TTTGTTTTT
7299783 TTTTTTGTTATTT
1 TTTTTTGTT-TTT
7299796 TT
1 TT
7299798 AAAAAAAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
12 31 0.65
13 17 0.35
ACGTcount: A:0.02, C:0.00, G:0.06, T:0.92
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:7299758 original size:21 final size:20
Alignment explanation
Indices: 7299734--7299788 Score: 92
Period size: 21 Copynumber: 2.7 Consensus size: 20
7299724 AAATTTTGGC
*
7299734 TTTTTTGTTTTTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTG-T
7299755 TTTTTTTTTTTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTGT
7299775 TTTTTTTTTTTTTT
1 TTTTTTTTTTTTTT
7299789 GTTATTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 15 0.45
21 18 0.55
ACGTcount: A:0.00, C:0.00, G:0.05, T:0.95
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTTTTGT
Found at i:7299760 original size:16 final size:16
Alignment explanation
Indices: 7299734--7299797 Score: 101
Period size: 16 Copynumber: 3.9 Consensus size: 16
7299724 AAATTTTGGC
7299734 TTTTTTGTTTTTTTTT
1 TTTTTTGTTTTTTTTT
*
7299750 TTGTTTTTTTTTTTTTT
1 TT-TTTTGTTTTTTTTT
7299767 TTTTTTGTTTTTTTTT
1 TTTTTTGTTTTTTTTT
7299783 TTTTTTGTTATTTTT
1 TTTTTTGTT-TTTTT
7299798 AAAAAAAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
16 24 0.55
17 20 0.45
ACGTcount: A:0.02, C:0.00, G:0.06, T:0.92
Consensus pattern (16 bp):
TTTTTTGTTTTTTTTT
Found at i:7299797 original size:1 final size:1
Alignment explanation
Indices: 7299734--7299788 Score: 83
Period size: 1 Copynumber: 55.0 Consensus size: 1
7299724 AAATTTTGGC
* * *
7299734 TTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7299789 GTTATTTTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.00, G:0.05, T:0.95
Consensus pattern (1 bp):
T
Found at i:7310305 original size:33 final size:34
Alignment explanation
Indices: 7310250--7310316 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
7310240 ATATAACATA
7310250 TATTATAATATAACATATAATATAA-ATACTATT
1 TATTATAATATAACATATAATATAACATACTATT
*
7310283 TATTATATATATAATATA-AATATAACTATACTAT
1 TATTATA-ATATAACATATAATATAAC-ATACTAT
7310317 ATATACTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 14 0.47
34 9 0.30
35 7 0.23
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (34 bp):
TATTATAATATAACATATAATATAACATACTATT
Found at i:7310470 original size:16 final size:17
Alignment explanation
Indices: 7310439--7310477 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
7310429 ATACTATTAT
7310439 ATTATATTATATATGATA
1 ATTA-ATTATATATGATA
*
7310457 TTTAATTA-ATATGATA
1 ATTAATTATATATGATA
7310473 ATTAA
1 ATTAA
7310478 AAACATGCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 12 0.63
17 4 0.21
18 3 0.16
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (17 bp):
ATTAATTATATATGATA
Found at i:7310503 original size:5 final size:5
Alignment explanation
Indices: 7310486--7310536 Score: 50
Period size: 5 Copynumber: 9.6 Consensus size: 5
7310476 AAAAACATGC
*
7310486 ATAAT ATTAAT ATAAT ATAAT ATAAT AT-AT AATACT ATATAT ATATAT
1 ATAAT A-TAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATA-AT ATA-AT
7310534 ATA
1 ATA
7310537 TTACATAGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
4 2 0.05
5 22 0.55
6 16 0.40
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (5 bp):
ATAAT
Found at i:7310537 original size:12 final size:11
Alignment explanation
Indices: 7310233--7310537 Score: 79
Period size: 11 Copynumber: 27.1 Consensus size: 11
7310223 TATTAACCAG
7310233 TAATAT-TATA
1 TAATATATATA
*
7310243 TAACATATAT-
1 TAATATATATA
7310253 T-ATA-ATATA
1 TAATATATATA
7310262 -ACATATA-ATA
1 TA-ATATATATA
*
7310272 TAA-ATACTATT
1 TAATATA-TATA
*
7310283 TATTATATATA
1 TAATATATATA
*
7310294 TAATATAAATA
1 TAATATATATA
7310305 TAACTATACTATA
1 TAA-TATA-TATA
*
7310318 T-ATACTATACA
1 TAATA-TATATA
*
7310329 T-ATACT-TGTA
1 TAATA-TATATA
* * *
7310339 AAATATTGTCAAA
1 TAATA-TAT-ATA
7310352 TAATATATATATA
1 T-A-ATATATATA
7310365 TAACGTATACTATA
1 TAA--TATA-TATA
* *
7310379 TACTAGAGTAATA
1 TAATATA-T-ATA
7310392 TAATATATATA
1 TAATATATATA
*
7310403 AAATATA-ATA
1 TAATATATATA
* *
7310413 TGACA-ATATA
1 TAATATATATA
7310423 TAATATATACTA
1 TAATATATA-TA
*
7310435 TTATAT-TATA
1 TAATATATATA
*
7310445 TTATATATGATATT
1 -TA-ATAT-ATATA
7310459 TAAT-TAATATGA
1 TAATAT-ATAT-A
* * *
7310471 TAATTAAAAACA
1 TAA-TATATATA
*
7310483 TGCATA-ATAT-
1 T-AATATATATA
7310493 TAATATA-ATA
1 TAATATATATA
7310503 TAATATAATATA
1 TAATAT-ATATA
7310515 TAATACTATATA
1 TAATA-TATATA
7310527 T-ATATATATA
1 TAATATATATA
7310537 T
1 T
7310538 TACATAGGTG
Statistics
Matches: 217, Mismatches: 41, Indels: 74
0.65 0.12 0.22
Matches are distributed among these distances:
8 4 0.02
9 11 0.05
10 43 0.20
11 66 0.30
12 51 0.24
13 27 0.12
14 12 0.06
15 3 0.01
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (11 bp):
TAATATATATA
Found at i:7311692 original size:20 final size:20
Alignment explanation
Indices: 7311651--7311690 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
7311641 AAAAATGAGT
7311651 TTAATATTTTTATTTTTAAA
1 TTAATATTTTTATTTTTAAA
7311671 TTAATTATTTTTATTTTTAA
1 TTAA-TATTTTTATTTTTAA
7311691 TTTGGATTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTAATATTTTTATTTTTAAA
Found at i:7312331 original size:2 final size:2
Alignment explanation
Indices: 7312324--7312370 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7312314 ATTATATTTC
7312324 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7312366 AT AT A
1 AT AT A
7312371 GTTAATGCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7312692 original size:27 final size:26
Alignment explanation
Indices: 7312634--7312692 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
7312624 TGGATTCTCT
*
7312634 AAATAATTTTTATATAATTTTATTTTT
1 AAAT-ATTTTTATATAATTTTATTTTA
*
7312661 TAATATTATTTATAT-ATTATTATTTTA
1 AAATATT-TTTATATAATT-TTATTTTA
7312688 AAATA
1 AAATA
7312693 ATTGTAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
AAATATTTTTATATAATTTTATTTTA
Found at i:7313933 original size:646 final size:650
Alignment explanation
Indices: 7312920--7314168 Score: 1983
Period size: 646 Copynumber: 1.9 Consensus size: 650
7312910 CGTTGAGCCA
* ** **
7312920 AGGGGTCACCGGTTGGAAAACCTTTAAGCACACTTTCTATTTTAATTTTTTTTATTTAATTAAAA
1 AGGGGTCACCGGTTGGAAAACCCTTAAGCACACTTTCTATTCCAAAATTTTTTATTTAATTAAAA
* *
7312985 TATTAAAATTAATTAAATTCACCCTCCAATCATATAGTGACATGTGGCACCTCCGAATTAGAGGA
66 TATTAAAATTAATTAAATTCACCCTCCAATCATATAGTGACAGGTGGCACCTCCAAATTAGAGGA
*
7313050 TTAATTTTTTTAATGAATTAAAATAGTGACTAAATTGATAGAATACGTAAATATTAAGGACTAAA
131 TTAATTTTTTTAATGAATTAAAATAGTGACTAAATTGATAGAATACATAAATATTAAGGACTAAA
* * *
7313115 TATATAATTATGTCAATTTTATTAACGGTCACATCATCACCTATGTTAAAAATTAATTGCTAGTG
196 TATATAATTATGCCAATTTTATTAACGATCACATCATCACCTATGTTAAAAATTAACTGCTAGTG
* *
7313180 GTTGGATTGAACCAATTAAATAGTTGGGTGGTCTGTTTGATCGCTTTAAACGTTGGTGGTCAAAA
261 GTTGGATTGAACCAATTAAATAGTTGGGTGGTATGTTTGATCGCTTTAAACATTGGTGGTCAAAA
* *
7313245 TAGTTAATGACTATAGTTCGGTGGTCACCCATATAATTTACCCTAAATAATAATATATAAATTAT
326 TAGTTAATGACCATAGTTCGGTGGTCACCCATACAATTTACCCTAAATAATAATATATAAATTAT
* *
7313310 ATTAAAATTATTTAGAGAATCCAAATCCAAATCCAAATAAA-AAAAT-A-AATTTAAAAATAAAA
391 ATTAAAATTATTTAGAGAATCCAAATCCAAATACAAAAAAATAAAATAATAATTTAAAAATAAAA
*
7313372 ATATTAAACTCATTTTATTTTTAAGTCTTACATTAA-CTAA-T-ATATAT-GAAAATATATTTTA
456 ATATTAAACTCATTTTATTTTTAAGTCTTACATTAATATAATTAATATATAG-AAATATATTTTA
* *
7313433 TTTATTATATTTGTTTTAATAATTTAATGTATATGTGTGTGTGAAAGAGAGAAATAAACTCAAAC
520 TTTATTATATTTGTTTTAATAATTTAA--AATATATGTGTGTGAAAGAGAGAAATAAACTCAAAC
*
7313498 ATAGTATATAAAATATTGTGCGAATTAAAATCAAATGAGTGGCTTGGTCTAGTGATAAGGGCATG
583 ATAATATATAAAATATTGTGCGAATTAAAATCAAATGAGTGGCTTGGTCTAGTGATAAGGGCATG
7313563 CTC
648 CTC
* * ** *
7313566 AGGGGTCACTGGTTGGAAACCCCTTAAGCTTACTTTTTATTCCAAAATTTTTTATTTAATTAAAA
1 AGGGGTCACCGGTTGGAAAACCCTTAAGCACACTTTCTATTCCAAAATTTTTTATTTAATTAAAA
* *
7313631 TATTAAAATTAATTAAATTCACCTTCCAATCATATAGTGAC-GGTGGCACCTCCAAATTGGAGGA
66 TATTAAAATTAATTAAATTCACCCTCCAATCATATAGTGACAGGTGGCACCTCCAAATTAGAGGA
* * *
7313695 TTAATTTTTTTGAGTGAATTAAAATAGTGGCTAAATTGATAGAATGCATAAATATTAAGGACTAA
131 TTAATTTTTTT-AATGAATTAAAATAGTGACTAAATTGATAGAATACATAAATATTAAGGACTAA
7313760 ATATATAATTATGCCAATTTTATTAACGATCACATCATCACCTATGTTAAAAATTAACTGCTAGT
195 ATATATAATTATGCCAATTTTATTAACGATCACATCATCACCTATGTTAAAAATTAACTGCTAGT
* * * *
7313825 GGTTGGATTGAACTATTTAAATAGTTGGGTGGTATGTTTGATTGCTTTAAACATTGGTGGTGAAA
260 GGTTGGATTGAACCAATTAAATAGTTGGGTGGTATGTTTGATCGCTTTAAACATTGGTGGTCAAA
* * * *
7313890 ATGGTTAATGACCATAGTTCGGTGGTCACCCTTGCAGTTTACCCTAAATAATAATATATAAATTA
325 ATAGTTAATGACCATAGTTCGGTGGTCACCCATACAATTTACCCTAAATAATAATATATAAATTA
* *
7313955 TATTAAAATTATTTAGAGAATCCAAATTCAAATATAAAAAAATAAAATAATTTAATTTAAAAATA
390 TATTAAAATTATTTAGAGAATCCAAATCCAAATACAAAAAAATAAAATAA--TAATTTAAAAATA
7314020 AAAATATTAAACTCATTTTATTTTTAAGTCTTACATTAATTATAATTTAATATATATGAAATATA
453 AAAATATTAAACTCATTTTATTTTTAAGTCTTACATTAA-TATAA-TTAATATATA-GAAATATA
7314085 TTTTATTTATTATATTTGTTTTAATAATTTAAAATATATGTGTGTGAAAGAGAGAAATAAACTCA
515 TTTTATTTATTATATTTGTTTTAATAATTTAAAATATATGTGTGTGAAAGAGAGAAATAAACTCA
*
7314150 AATATAATATATAAAATAT
580 AACATAATATATAAAATAT
7314169 CATCATCTCT
Statistics
Matches: 548, Mismatches: 42, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
645 31 0.06
646 362 0.66
647 5 0.01
648 1 0.00
651 51 0.09
653 3 0.01
655 49 0.09
656 6 0.01
657 39 0.07
658 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.37
Consensus pattern (650 bp):
AGGGGTCACCGGTTGGAAAACCCTTAAGCACACTTTCTATTCCAAAATTTTTTATTTAATTAAAA
TATTAAAATTAATTAAATTCACCCTCCAATCATATAGTGACAGGTGGCACCTCCAAATTAGAGGA
TTAATTTTTTTAATGAATTAAAATAGTGACTAAATTGATAGAATACATAAATATTAAGGACTAAA
TATATAATTATGCCAATTTTATTAACGATCACATCATCACCTATGTTAAAAATTAACTGCTAGTG
GTTGGATTGAACCAATTAAATAGTTGGGTGGTATGTTTGATCGCTTTAAACATTGGTGGTCAAAA
TAGTTAATGACCATAGTTCGGTGGTCACCCATACAATTTACCCTAAATAATAATATATAAATTAT
ATTAAAATTATTTAGAGAATCCAAATCCAAATACAAAAAAATAAAATAATAATTTAAAAATAAAA
ATATTAAACTCATTTTATTTTTAAGTCTTACATTAATATAATTAATATATAGAAATATATTTTAT
TTATTATATTTGTTTTAATAATTTAAAATATATGTGTGTGAAAGAGAGAAATAAACTCAAACATA
ATATATAAAATATTGTGCGAATTAAAATCAAATGAGTGGCTTGGTCTAGTGATAAGGGCATGCTC
Found at i:7329421 original size:18 final size:18
Alignment explanation
Indices: 7329395--7329429 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7329385 CTTTGTCATA
*
7329395 TAATATAGTCATTTCGAG
1 TAATATAGTCATATCGAG
*
7329413 TAATTTAGTCATATCGA
1 TAATATAGTCATATCGA
7329430 ACAATTTAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (18 bp):
TAATATAGTCATATCGAG
Found at i:7329435 original size:18 final size:18
Alignment explanation
Indices: 7329400--7329438 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7329390 TCATATAATA
* **
7329400 TAGTCATTTCGAGTAATT
1 TAGTCATATCGAACAATT
7329418 TAGTCATATCGAACAATT
1 TAGTCATATCGAACAATT
7329436 TAG
1 TAG
7329439 ATAAAAGACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (18 bp):
TAGTCATATCGAACAATT
Found at i:7333299 original size:32 final size:32
Alignment explanation
Indices: 7333245--7333316 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 32
7333235 TCCCATGATT
* * * *
7333245 TACCCAAGAGAGTGCCTTGGGG-CTTGAGAGTC
1 TACCCAAGAAAGTGCCTCGGGGCCTCGA-AGCC
**
7333277 TACCCAAGAAAGTTTCTCGGGGCCTCGAAGCC
1 TACCCAAGAAAGTGCCTCGGGGCCTCGAAGCC
7333309 TACCCAAG
1 TACCCAAG
7333317 GGTCACATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
32 29 0.88
33 4 0.12
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (32 bp):
TACCCAAGAAAGTGCCTCGGGGCCTCGAAGCC
Found at i:7335364 original size:3 final size:3
Alignment explanation
Indices: 7335356--7335423 Score: 95
Period size: 3 Copynumber: 23.3 Consensus size: 3
7335346 CCATATTTAA
* *
7335356 ATT ATT ATT ATT ATT ATT ATA AGT ATT ATT A-T ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
7335403 ATT ATT ATT A-T ACT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
7335424 ATAAATAAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
2 4 0.07
3 54 0.93
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:7335394 original size:26 final size:26
Alignment explanation
Indices: 7335356--7335423 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
7335346 CCATATTTAA
7335356 ATTATTATTATTATTATTATAAGTATT
1 ATTA-TATTATTATTATTATAAGTATT
* *
7335383 ATTATATTATTATTATTATTATTATT
1 ATTATATTATTATTATTATAAGTATT
*
7335409 ATTATACTATTATTA
1 ATTATATTATTATTA
7335424 ATAAATAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 34 0.89
27 4 0.11
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (26 bp):
ATTATATTATTATTATTATAAGTATT
Found at i:7335435 original size:26 final size:25
Alignment explanation
Indices: 7335353--7335435 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 25
7335343 TTTCCATATT
*
7335353 TAAATTATTATTATTATTATTATAAG
1 TAAATTATTA-TATTATTATTATAAA
* *
7335379 T--ATTATTATATTATTATTATTAT
1 TAAATTATTATATTATTATTATAAA
* *
7335402 TATTATTATTATACTATTATTAATAAA
1 TA-AATTATTATATTATTATT-ATAAA
7335429 TAAATTA
1 TAAATTA
7335436 CAAGGCCCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 14 0.30
24 7 0.15
26 21 0.45
27 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (25 bp):
TAAATTATTATATTATTATTATAAA
Found at i:7336681 original size:31 final size:29
Alignment explanation
Indices: 7336609--7336684 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
7336599 CTAATTTTAA
*
7336609 TAATTTCATTTATTTTTAACTACAAGTTT
1 TAATTTTATTTATTTTTAACTACAAGTTT
7336638 T-ATTACTT-TTTATATTTTAA-TACTATAGTTT
1 TAATT--TTATTTAT-TTTTAACTAC-A-AGTTT
7336669 TAATTTTATTTATTTT
1 TAATTTTATTTATTTT
7336685 AGTCACTGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 13
0.74 0.02 0.25
Matches are distributed among these distances:
28 3 0.08
29 9 0.23
30 13 0.33
31 11 0.28
32 3 0.08
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.62
Consensus pattern (29 bp):
TAATTTTATTTATTTTTAACTACAAGTTT
Found at i:7336741 original size:14 final size:14
Alignment explanation
Indices: 7336724--7336753 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7336714 TTCTTTAAAT
7336724 TTCAATATGTTTAA
1 TTCAATATGTTTAA
7336738 TTCAATATGTTTAA
1 TTCAATATGTTTAA
7336752 TT
1 TT
7336754 ATTATTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (14 bp):
TTCAATATGTTTAA
Found at i:7336926 original size:21 final size:22
Alignment explanation
Indices: 7336885--7336928 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 22
7336875 TTTTAAATAA
7336885 ATATCATGCTTATAATATATAT
1 ATATCATGCTTATAATATATAT
*
7336907 ATATC-TGCTT-TAAT-TTTAT
1 ATATCATGCTTATAATATATAT
7336926 ATA
1 ATA
7336929 AATTATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 4 0.19
21 5 0.24
22 5 0.24
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (22 bp):
ATATCATGCTTATAATATATAT
Found at i:7337181 original size:115 final size:113
Alignment explanation
Indices: 7336947--7337183 Score: 320
Period size: 115 Copynumber: 2.1 Consensus size: 113
7336937 TAATCATGTT
7336947 TTTATTTATTTATTTATTTTAATATTAAGAAAGGGGTTGTCTTAAAGCAACTAGAAGTCATTTTC
1 TTTATTTATTTATTTATTTTAATATTAAGAAAGGGGTTGTCTTAAAGCAACTAGAAGTCATTTTC
* * * *
7337012 TGATATTTTTAAATAAATAAATATCATACTTTTATAAATTATATATAA
66 TGATATTTCTAAATAAATAAATATCATACTTTTATAAAATATAAAAAA
*
7337060 TTTATTTATTAATATTT-TTTTAAATATTAAGAAAGGGGTTGTCTTAAAGCAACTAGAA-TCCTT
1 TTTATTTATT--TATTTATTTT-AATATTAAGAAAGGGGTTGTCTTAAAGCAACTAGAAGTCATT
* * *
7337123 TTCTGATATTTCTAAGTAAATGAATATCTTA--TTTATAAAAATATAAAAAA
63 TTCTGATATTTCTAAATAAATAAATATCATACTTTTAT-AAAATATAAAAAA
7337173 TATATATTTAT
1 T-T-TATTTAT
7337184 AAAAATTAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
112 5 0.05
113 21 0.19
114 36 0.33
115 48 0.44
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (113 bp):
TTTATTTATTTATTTATTTTAATATTAAGAAAGGGGTTGTCTTAAAGCAACTAGAAGTCATTTTC
TGATATTTCTAAATAAATAAATATCATACTTTTATAAAATATAAAAAA
Found at i:7338620 original size:36 final size:36
Alignment explanation
Indices: 7338573--7338643 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
7338563 CTATGCACAC
* *
7338573 AAAGATTATGTTA-TATTGATACCAAAAGTATTCCAA
1 AAAGATCATGTTAGT-TTGATACCAAAAGCATTCCAA
7338609 AAAGATCATGTTAGTTTGATACCAAAAGCATTCCA
1 AAAGATCATGTTAGTTTGATACCAAAAGCATTCCA
7338644 TGGTAAGAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 31 0.97
37 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (36 bp):
AAAGATCATGTTAGTTTGATACCAAAAGCATTCCAA
Found at i:7339235 original size:13 final size:13
Alignment explanation
Indices: 7339217--7339245 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7339207 TCATACATGG
7339217 ATTTTCATTTTGC
1 ATTTTCATTTTGC
7339230 ATTTTCATTTTGC
1 ATTTTCATTTTGC
7339243 ATT
1 ATT
7339246 CGTACTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.14, G:0.07, T:0.62
Consensus pattern (13 bp):
ATTTTCATTTTGC
Found at i:7339337 original size:14 final size:14
Alignment explanation
Indices: 7339277--7339342 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 14
7339267 GTATTGCACA
*
7339277 ATTTGCATTCTTAT
1 ATTTGCATTTTTAT
* * *
7339291 TTTTGCATCTTTGT
1 ATTTGCATTTTTAT
**
7339305 ATTTGCATTTGCAT
1 ATTTGCATTTTTAT
*
7339319 CTTTGCATTTTTAT
1 ATTTGCATTTTTAT
* *
7339333 GTTTGTATTT
1 ATTTGCATTT
7339343 ACATTTTCAT
Statistics
Matches: 38, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.15, C:0.12, G:0.12, T:0.61
Consensus pattern (14 bp):
ATTTGCATTTTTAT
Found at i:7339357 original size:20 final size:20
Alignment explanation
Indices: 7339324--7339362 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7339314 TGCATCTTTG
* *
7339324 CATTTTTATGTTTGTATTTA
1 CATTTTCATGTTTGCATTTA
*
7339344 CATTTTCATTTTTGCATTT
1 CATTTTCATGTTTGCATTT
7339363 GCATCTTTGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.64
Consensus pattern (20 bp):
CATTTTCATGTTTGCATTTA
Found at i:7339686 original size:42 final size:42
Alignment explanation
Indices: 7339625--7339708 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
7339615 AGAGATGAAT
* * * *
7339625 GATCAAGTAAAAAAGTTCCAGTGA-GATTCAAATGAACAAATG
1 GATCAAGCAAAAAAATTCCA-AGATGATTCAAAAGAACAAATG
*
7339667 GATCAAGCAAAAAAATTCCAAGATGATTCAAAAGAGCAAATG
1 GATCAAGCAAAAAAATTCCAAGATGATTCAAAAGAACAAATG
7339709 ACAAAACTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
41 2 0.06
42 34 0.94
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (42 bp):
GATCAAGCAAAAAAATTCCAAGATGATTCAAAAGAACAAATG
Found at i:7342015 original size:121 final size:121
Alignment explanation
Indices: 7341720--7342073 Score: 638
Period size: 121 Copynumber: 2.9 Consensus size: 121
7341710 AAACACATAG
* * *
7341720 ATATATTCAAAGCATGACCTTGATTGGGTATTTGGCAGTTCAGTGTTTACTCCACTATGATTGTC
1 ATATATTCAAAGCATGACCTTGATCGGGTATTTGGCAGTTCGGTGTTTACTCCACTGTGATTGTC
*
7341785 AAGTCAAAGGCATTGTGATGAGTTGAACCCTTTAATTAGTCCAATG-AAAAAAGTC
66 AAGTCAAAGACATTGTGATGAGTTGAACCCTTTAATTAGTCCAATGAAAAAAAGTC
*
7341840 ATATATTCAAAGCATGACCTTGATCGGGTATTTGGCAGTTCGGTGTTTACTCCACTGTTATTGTC
1 ATATATTCAAAGCATGACCTTGATCGGGTATTTGGCAGTTCGGTGTTTACTCCACTGTGATTGTC
7341905 AAGTCAAAGACATTGTGATGAGTTGAACCCTTTAATTAGTCCAATGAAAAAAAGTC
66 AAGTCAAAGACATTGTGATGAGTTGAACCCTTTAATTAGTCCAATGAAAAAAAGTC
*
7341961 ATATATTCAAAGCATGACCTTGATCGGGTATTTGGCAGTTCGGTGTTTGCTCCACTGTGATTGTC
1 ATATATTCAAAGCATGACCTTGATCGGGTATTTGGCAGTTCGGTGTTTACTCCACTGTGATTGTC
*
7342026 AAGTCAAAGATATTGTGATGAGTTGAACCCTTTAATTAGTCCAATGAA
66 AAGTCAAAGACATTGTGATGAGTTGAACCCTTTAATTAGTCCAATGAA
7342074 GACTAATGTC
Statistics
Matches: 225, Mismatches: 8, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
120 106 0.47
121 119 0.53
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (121 bp):
ATATATTCAAAGCATGACCTTGATCGGGTATTTGGCAGTTCGGTGTTTACTCCACTGTGATTGTC
AAGTCAAAGACATTGTGATGAGTTGAACCCTTTAATTAGTCCAATGAAAAAAAGTC
Found at i:7344090 original size:75 final size:75
Alignment explanation
Indices: 7344010--7344155 Score: 238
Period size: 75 Copynumber: 1.9 Consensus size: 75
7344000 GCAAATGTTG
* * * *
7344010 GGGCATGCTGAAAGCCTATTTCAATCATAATCAGGAATATTGACGCATTTTGAACGTTTGTATCA
1 GGGCATACTGAAAGCCCATTTCAATCATAATCAAGAATATTGACGCATTTTGAACGCTTGTATCA
7344075 GCAAATACTA
66 GCAAATACTA
* *
7344085 GGGCATACTGAAAGCCCATTTCAATCGTAATCAAGAATGTTGACGCATTTTGAACGCTTGTATCA
1 GGGCATACTGAAAGCCCATTTCAATCATAATCAAGAATATTGACGCATTTTGAACGCTTGTATCA
7344150 GCAAAT
66 GCAAAT
7344156 GTTTGGCATG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (75 bp):
GGGCATACTGAAAGCCCATTTCAATCATAATCAAGAATATTGACGCATTTTGAACGCTTGTATCA
GCAAATACTA
Found at i:7345046 original size:54 final size:55
Alignment explanation
Indices: 7344983--7345138 Score: 212
Period size: 54 Copynumber: 2.9 Consensus size: 55
7344973 AGAAATCTAG
** *
7344983 GCAG-AAGCCACAAAAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATTTG-
1 GCAGAAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
*
7345036 GACA-AAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTATGAACATCTGA
1 G-CAGAAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
* * *
7345091 GCAGAAA-CCACAGGAAAGAATGAATGTATTGTCAAATATTTTACGAAC
1 GCAGAAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAAC
7345139 CAGTTATTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
53 1 0.01
54 86 0.95
55 4 0.04
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (55 bp):
GCAGAAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
Found at i:7345258 original size:25 final size:27
Alignment explanation
Indices: 7345194--7345249 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
7345184 CATTTATTGA
7345194 CCCAAG-ATGAAGTTTGTCTTCTTTAAC
1 CCCAAGCA-GAAGTTTGTCTTCTTTAAC
*
7345221 CCCAAGGTTAGAAGTTTGTCTTCTTTAAC
1 CCCAA-G-CAGAAGTTTGTCTTCTTTAAC
7345250 TCCACAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 5 0.19
28 1 0.04
29 19 0.73
30 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (27 bp):
CCCAAGCAGAAGTTTGTCTTCTTTAAC
Found at i:7346259 original size:45 final size:45
Alignment explanation
Indices: 7346195--7346989 Score: 1340
Period size: 45 Copynumber: 17.6 Consensus size: 45
7346185 CTATTTCCTA
*
7346195 CATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
7346240 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAATCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* * **
7346285 TATTTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTTAGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
7346330 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCAGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
7346375 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
7346420 CATTTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
7346465 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
7346510 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* * *
7346555 CATCTGTAAGCCCTTCAGTACATAATGTTTTCAAAACCTTCGTGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
7346600 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
7346645 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC---A-AAACCTTCGGGT
*
7346694 CATCTGTAAGTCCTTCAGTGCATGATGTTTTC-AAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
7346738 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* * *
7346783 CATCTGTAAGCCCTTCAGTGCATGATGTTTTTAAAACCTTTGAGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
**
7346828 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCAAGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
7346873 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
7346918 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGTGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* * *
7346963 CATCTGTAAGACCTACAGTGCAAGATG
1 CATCTGTAAGCCCTTCAGTGCATGATG
7346990 ATAAGACCTC
Statistics
Matches: 709, Mismatches: 36, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
44 43 0.06
45 622 0.88
48 1 0.00
49 43 0.06
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (45 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
Done.