Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 56
Found at i:7347172 original size:3 final size:3
Alignment explanation
Indices: 7347164--7347231 Score: 86
Period size: 3 Copynumber: 23.3 Consensus size: 3
7347154 CCATATTTAA
* * *
7347164 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATA AGT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
7347211 ATT ATT ATT A-T ACT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
7347232 ATAAATAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 4 0.07
3 52 0.93
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:7348650 original size:14 final size:14
Alignment explanation
Indices: 7348633--7348662 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7348623 TTCTTTAAAT
7348633 TTCAATATATTTAA
1 TTCAATATATTTAA
*
7348647 TTCAATATGTTTAA
1 TTCAATATATTTAA
7348661 TT
1 TT
7348663 ATTATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (14 bp):
TTCAATATATTTAA
Found at i:7348708 original size:24 final size:23
Alignment explanation
Indices: 7348660--7348708 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
7348650 AATATGTTTA
* *
7348660 ATTATTATTATTTTATTCATATT
1 ATTATTATTATTTGATTAATATT
*
7348683 ATTATATATTATTTGATTAATTTT
1 ATTAT-TATTATTTGATTAATATT
7348707 AT
1 AT
7348709 AAATTAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (23 bp):
ATTATTATTATTTGATTAATATT
Found at i:7348989 original size:28 final size:28
Alignment explanation
Indices: 7348958--7349015 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
7348948 AATATCATAC
7348958 TTTT-ATAAATTA-TATATAATTTATTTAT
1 TTTTAATAAATTATTA-AT-ATTTATTTAT
* *
7348986 TTTTAATTATTTATTAATATTTATTTAT
1 TTTTAATAAATTATTAATATTTATTTAT
7349014 TT
1 TT
7349016 ATTTTAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 16 0.62
29 8 0.31
30 2 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (28 bp):
TTTTAATAAATTATTAATATTTATTTAT
Found at i:7348997 original size:14 final size:14
Alignment explanation
Indices: 7348967--7349017 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
7348957 CTTTTATAAA
*
7348967 TTATATATAATTTAT
1 TTATTTATAA-TTAT
*
7348982 TTATTTTTAATTAT
1 TTATTTATAATTAT
* *
7348996 TTATTAATATTTAT
1 TTATTTATAATTAT
7349010 TTATTTAT
1 TTATTTAT
7349018 TTTAATATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 22 0.73
15 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTATAATTAT
Found at i:7348997 original size:18 final size:18
Alignment explanation
Indices: 7348976--7349019 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7348966 ATTATATATA
*
7348976 ATTTATTTATTTTTAATT
1 ATTTATTTATATTTAATT
* *
7348994 ATTTATTAATATTTATTT
1 ATTTATTTATATTTAATT
7349012 ATTTATTT
1 ATTTATTT
7349020 TAATATTAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTATTTATATTTAATT
Found at i:7352184 original size:9 final size:9
Alignment explanation
Indices: 7352170--7352241 Score: 63
Period size: 10 Copynumber: 7.4 Consensus size: 9
7352160 AGGGCTGGAA
7352170 ACCGGTTTG
1 ACCGGTTTG
*
7352179 ACCGGTTTTCA
1 ACCGG-TTT-G
7352190 ACCGGTTCTG
1 ACCGGTT-TG
* *
7352200 ACCGATTCG
1 ACCGGTTTG
7352209 AACCGGTTTG
1 -ACCGGTTTG
*
7352219 ACCGGTATG
1 ACCGGTTTG
7352228 AACCGGTTTG
1 -ACCGGTTTG
7352238 ACCG
1 ACCG
7352242 ATCTGACCCG
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
9 18 0.36
10 26 0.52
11 6 0.12
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:7352222 original size:19 final size:19
Alignment explanation
Indices: 7352169--7352243 Score: 82
Period size: 19 Copynumber: 3.8 Consensus size: 19
7352159 GAGGGCTGGA
*
7352169 AACCGGTTTGACCGGTTTTC-
1 AACCGGTTTGACC-G-ATTCG
7352189 AACCGGTTCTGACCGATTCG
1 AACCGGTT-TGACCGATTCG
*
7352209 AACCGGTTTGACCGGTAT-G
1 AACCGGTTTGACCGAT-TCG
7352228 AACCGGTTTGACCGAT
1 AACCGGTTTGACCGAT
7352244 CTGACCCGAC
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
19 26 0.53
20 18 0.37
21 5 0.10
ACGTcount: A:0.20, C:0.25, G:0.27, T:0.28
Consensus pattern (19 bp):
AACCGGTTTGACCGATTCG
Found at i:7358704 original size:9 final size:9
Alignment explanation
Indices: 7358690--7358759 Score: 50
Period size: 10 Copynumber: 7.3 Consensus size: 9
7358680 AGGGCTGGAA
7358690 ACCGGTTTG
1 ACCGGTTTG
7358699 ACCGGTTTCG
1 ACCGGTTT-G
*
7358709 ACCGGTTCG
1 ACCGGTTTG
*
7358718 AACCAGTTTCG
1 -ACCGGTTT-G
*
7358729 ACCGGTATG
1 ACCGGTTTG
* *
7358738 AATCGGTTTA
1 -ACCGGTTTG
*
7358748 ACCGGTCTG
1 ACCGGTTTG
7358757 ACC
1 ACC
7358760 CGACCCGACT
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
9 19 0.41
10 26 0.57
11 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:7358713 original size:10 final size:10
Alignment explanation
Indices: 7358690--7358734 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
7358680 AGGGCTGGAA
7358690 ACCGGTTT-G
1 ACCGGTTTCG
7358699 ACCGGTTTCG
1 ACCGGTTTCG
7358709 ACCGG-TTCG
1 ACCGGTTTCG
*
7358718 AACCAGTTTCG
1 -ACCGGTTTCG
7358729 ACCGGT
1 ACCGGT
7358735 ATGAATCGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 12 0.39
10 15 0.48
11 4 0.13
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.27
Consensus pattern (10 bp):
ACCGGTTTCG
Found at i:7358746 original size:20 final size:20
Alignment explanation
Indices: 7358690--7358734 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7358680 AGGGCTGGAA
*
7358690 ACCGGTTTG-ACCGGTTTCG
1 ACCGGTTCGAACCGGTTTCG
*
7358709 ACCGGTTCGAACCAGTTTCG
1 ACCGGTTCGAACCGGTTTCG
7358729 ACCGGT
1 ACCGGT
7358735 ATGAATCGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.27
Consensus pattern (20 bp):
ACCGGTTCGAACCGGTTTCG
Found at i:7358773 original size:14 final size:15
Alignment explanation
Indices: 7358754--7358788 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
7358744 TTTAACCGGT
7358754 CTGACCCGACCCGA-
1 CTGACCCGACCCGAC
*
7358768 CTGACCCGATCCGAC
1 CTGACCCGACCCGAC
7358783 CTGACC
1 CTGACC
7358789 GTTGACCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.20, C:0.49, G:0.20, T:0.11
Consensus pattern (15 bp):
CTGACCCGACCCGAC
Found at i:7358807 original size:7 final size:7
Alignment explanation
Indices: 7358784--7358820 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
7358774 CGATCCGACC
7358784 TGACCGT
1 TGACCGT
7358791 TGACC--
1 TGACCGT
*
7358796 CGACCGT
1 TGACCGT
7358803 TGACCGT
1 TGACCGT
7358810 TGACCGT
1 TGACCGT
7358817 TGAC
1 TGAC
7358821 TTCCTTTGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
5 4 0.15
7 22 0.85
ACGTcount: A:0.16, C:0.32, G:0.27, T:0.24
Consensus pattern (7 bp):
TGACCGT
Found at i:7363675 original size:13 final size:13
Alignment explanation
Indices: 7363657--7363683 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7363647 TGAAATTTTA
7363657 TTTGGATTTATAT
1 TTTGGATTTATAT
7363670 TTTGGATTTATAT
1 TTTGGATTTATAT
7363683 T
1 T
7363684 CATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.15, T:0.63
Consensus pattern (13 bp):
TTTGGATTTATAT
Found at i:7367954 original size:231 final size:232
Alignment explanation
Indices: 7367550--7368008 Score: 778
Period size: 231 Copynumber: 2.0 Consensus size: 232
7367540 AAAAATGAAC
*
7367550 AAACTTTATGAAATTTTCCTTTCATTTCATGTTAATTTACCTTTTATTTAAGCTTAAATGAATAA
1 AAACTTTATGAAATTTTCCTTTCATTTCATGTTAATTTACCTCTTATTTAAGCTTAAATGAATAA
* * *
7367615 AATATTTAATTAATGAGAAATGTCCATTTTACCCTTAATGAAACTTGATATTTACCTTAATACCA
66 AATATTCAATTAATGAGAAATATCCATTTTACCCTTAATGAAACTTGATATTTACCTTAATAACA
*
7367680 AACCACATAACCCTTATCATCTTTATAAAGTCAAAGATGAACCAATTAATTAACCCTTTCCAACT
131 AACCACATAACCCTTATCATCTTTATAAAGTCAAAGATGAACCAATTAATTAACCATTTCCAACT
7367745 TTGCCCATGCAATC-TTCCCAAAATTTCAATCTTAATG
196 TTGCCCATGCAATCTTTCCC-AAATTTCAATCTTAATG
*
7367782 AAACTTTATGAAATTTTCCTTTCCTTTCATGTTAATTTACCTCTTATTTAAGCTTAAATGAATAA
1 AAACTTTATGAAATTTTCCTTTCATTTCATGTTAATTTACCTCTTATTTAAGCTTAAATGAATAA
* *
7367847 AATA-TCATTTAATGAGAAATATCCATTTTACCCTTAATGAAACTTGATATTTACCTTATTAACA
66 AATATTCAATTAATGAGAAATATCCATTTTACCCTTAATGAAACTTGATATTTACCTTAATAACA
* * * * *
7367911 AGCCACATAACCCTTATGATCTTTTTAAAGTCAAAGATGAACCAATTAATTCACCATTTCTAACT
131 AACCACATAACCCTTATCATCTTTATAAAGTCAAAGATGAACCAATTAATTAACCATTTCCAACT
7367976 TTGCCCATGCAATCTTTCCCAAATTTCAATCTT
196 TTGCCCATGCAATCTTTCCCAAATTTCAATCTT
7368009 GCCATTTTCA
Statistics
Matches: 213, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
231 141 0.66
232 72 0.34
ACGTcount: A:0.35, C:0.20, G:0.07, T:0.39
Consensus pattern (232 bp):
AAACTTTATGAAATTTTCCTTTCATTTCATGTTAATTTACCTCTTATTTAAGCTTAAATGAATAA
AATATTCAATTAATGAGAAATATCCATTTTACCCTTAATGAAACTTGATATTTACCTTAATAACA
AACCACATAACCCTTATCATCTTTATAAAGTCAAAGATGAACCAATTAATTAACCATTTCCAACT
TTGCCCATGCAATCTTTCCCAAATTTCAATCTTAATG
Found at i:7372891 original size:24 final size:24
Alignment explanation
Indices: 7372847--7372892 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7372837 TTCAATTCTT
*
7372847 TCATTTGCAACCCTAATGTTTTCA
1 TCATTTGCAACCCTAACGTTTTCA
*
7372871 TCATTTTCAACTCC-AACGTTTT
1 TCATTTGCAAC-CCTAACGTTTT
7372893 GTTCAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.24, C:0.26, G:0.07, T:0.43
Consensus pattern (24 bp):
TCATTTGCAACCCTAACGTTTTCA
Found at i:7374910 original size:317 final size:318
Alignment explanation
Indices: 7374322--7374960 Score: 1057
Period size: 317 Copynumber: 2.0 Consensus size: 318
7374312 AAAAAATAAA
* *
7374322 ATAAAGGAAAGAAAGAGTTGGCTGCAAAATTATGTTGAAGATGATGTTGTCGGTGGTCTTCAATG
1 ATAAAGGAAAGAAAGAGTTGGCTACAAAATTATGTTGAAGATGATGTGGTCGGTGGTCTTCAATG
* *
7374387 GAAGATGGATGATGGTGATGATCTTGTATCTCAAACTTGCCAAAGAAGAAGCTATGCTAAAGAGC
66 GAAGATGGATGATGGTGATGATCTTGTATCTCAAACTCGCCAAAGAAGAAGCTATGCTAAAGACC
* * *
7374452 AAAACCCCGGTCTTCATAAACTTGCTTGAGGGATGGTAATGGTGTCTTAAACCCACTAGTTATAA
131 AAAACCCCGGTCTTCACAAACTTGCTTGAGGGATGATAATGGTGTCTTAAACCCACTAGATATAA
* *
7374517 AATCTAGGAATTATAAGAATCAAGATGGAAAGGATGACACCACAAGCATAGAAATATAATTGCTT
196 AATCTAGGAATTATAAAAATCAAAATGGAAAGGATGACACCACAAGCATAGAAATATAATTGCTT
* * *
7374582 AATCGATAAAGTTCTTAAAGAACTTGTAAAAGAGATTAACTCACAAAGAATTTGTTTT
261 AATCGATAAAGTCCTTAAAGAACTTGGAAAAGAGATTAACTCACAAAGAAGTTGTTTT
** * *
7374640 ATAAAGGAAAGAAAGAGTTGGCTACGGAATTATGTTGAAGATGATGTGGTCTGTGGTCTTTAATG
1 ATAAAGGAAAGAAAGAGTTGGCTACAAAATTATGTTGAAGATGATGTGGTCGGTGGTCTTCAATG
*
7374705 GAAGATGGATGATGGTGATGATCTTGTATCTGAAA-TACGCCAAAGAAGAAGCTATGCTAAAGAC
66 GAAGATGGATGATGGTGATGATCTTGTATCTCAAACT-CGCCAAAGAAGAAGCTATGCTAAAGAC
*
7374769 CAAAA-CCCGGTCTTCACAAACTTGCTTGAGGGATGATAATGGTGTCTTAAACCCACTAGATATG
130 CAAAACCCCGGTCTTCACAAACTTGCTTGAGGGATGATAATGGTGTCTTAAACCCACTAGATATA
* * *
7374833 AAATCTAGGAATTATAAAAATCAAAATGGAAAGGATGACGCCACAAGTATAGAAATATACTTGCT
195 AAATCTAGGAATTATAAAAATCAAAATGGAAAGGATGACACCACAAGCATAGAAATATAATTGCT
*
7374898 TAATCGATAAAGTCCTTAAAGAACTTGGAAAAGAGATTAACTCATAAAGAAGTTGTTTT
260 TAATCGATAAAGTCCTTAAAGAACTTGGAAAAGAGATTAACTCACAAAGAAGTTGTTTT
7374957 ATAA
1 ATAA
7374961 TATGAATGAG
Statistics
Matches: 298, Mismatches: 22, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
317 175 0.59
318 123 0.41
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (318 bp):
ATAAAGGAAAGAAAGAGTTGGCTACAAAATTATGTTGAAGATGATGTGGTCGGTGGTCTTCAATG
GAAGATGGATGATGGTGATGATCTTGTATCTCAAACTCGCCAAAGAAGAAGCTATGCTAAAGACC
AAAACCCCGGTCTTCACAAACTTGCTTGAGGGATGATAATGGTGTCTTAAACCCACTAGATATAA
AATCTAGGAATTATAAAAATCAAAATGGAAAGGATGACACCACAAGCATAGAAATATAATTGCTT
AATCGATAAAGTCCTTAAAGAACTTGGAAAAGAGATTAACTCACAAAGAAGTTGTTTT
Found at i:7377596 original size:29 final size:29
Alignment explanation
Indices: 7377563--7377637 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
7377553 GGAGGGTAAC
*
7377563 ATCCCCGTTCTGATTCTACAAGGGATTAT
1 ATCCCCGTTCTGATTCTACAAGAGATTAT
** * *
7377592 ATCCCAATTCTGATTCTGCATGAGATTAT
1 ATCCCCGTTCTGATTCTACAAGAGATTAT
* *
7377621 ATCCTCGTCCTGATTCT
1 ATCCCCGTTCTGATTCT
7377638 GTTTGGGATC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
ATCCCCGTTCTGATTCTACAAGAGATTAT
Found at i:7388175 original size:23 final size:23
Alignment explanation
Indices: 7388140--7388201 Score: 117
Period size: 23 Copynumber: 2.7 Consensus size: 23
7388130 GGGTGACTCC
7388140 TCTCT-TTTTCTCTCTTACCCTT
1 TCTCTATTTTCTCTCTTACCCTT
7388162 TCTCTATTTTCTCTCTTACCCTT
1 TCTCTATTTTCTCTCTTACCCTT
7388185 TCTCTATTTTCTCTCTT
1 TCTCTATTTTCTCTCTT
7388202 TTTTTGTGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
22 5 0.13
23 34 0.87
ACGTcount: A:0.06, C:0.34, G:0.00, T:0.60
Consensus pattern (23 bp):
TCTCTATTTTCTCTCTTACCCTT
Found at i:7397784 original size:26 final size:27
Alignment explanation
Indices: 7397755--7397807 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7397745 GTCTGACTTG
*
7397755 GCAG-TTTCTAAAAGGTCCAGTCAGTA
1 GCAGTTTTCTAAAAGATCCAGTCAGTA
* *
7397781 GCAGTTTTCTAGAAGATCTAGTCAGTA
1 GCAGTTTTCTAAAAGATCCAGTCAGTA
7397808 TCTTCTGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (27 bp):
GCAGTTTTCTAAAAGATCCAGTCAGTA
Found at i:7400690 original size:9 final size:8
Alignment explanation
Indices: 7400671--7400727 Score: 60
Period size: 9 Copynumber: 6.4 Consensus size: 8
7400661 TCTTCGAATA
7400671 TTTCTTTT
1 TTTCTTTT
7400679 TTTCTCTTT
1 TTTCT-TTT
7400688 TTTCTTTTCT
1 TTTC-TTT-T
7400698 TTTCTTTT
1 TTTCTTTT
7400706 ATTTCTTTT
1 -TTTCTTTT
7400715 CTTTCTTTCT
1 -TTTCTTT-T
7400725 TTT
1 TTT
7400728 TTGCTATTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
8 6 0.14
9 30 0.70
10 7 0.16
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTCTTTT
Found at i:7400697 original size:5 final size:5
Alignment explanation
Indices: 7400678--7400727 Score: 54
Period size: 5 Copynumber: 10.8 Consensus size: 5
7400668 ATATTTCTTT
* *
7400678 TTTTC TCTT- TTTTC TTTTC TTTTC TTTT- ATTTC TTTTC -TTTC -TTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
7400724 TTTT
1 TTTT
7400728 TTGCTATTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
4 14 0.37
5 24 0.63
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:7400697 original size:14 final size:13
Alignment explanation
Indices: 7400671--7400727 Score: 71
Period size: 14 Copynumber: 4.2 Consensus size: 13
7400661 TCTTCGAATA
7400671 TTTCTTTTTTTCT
1 TTTCTTTTTTTCT
7400684 CTTT-TTTCTTTTCT
1 -TTTCTTT-TTTTCT
7400698 TTTCTTTTATTTCT
1 TTTCTTTT-TTTCT
*
7400712 TTTCTTTCTTTCT
1 TTTCTTTTTTTCT
7400725 TTT
1 TTT
7400728 TTGCTATTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
13 15 0.38
14 24 0.62
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTCTTTTTTTCT
Found at i:7400702 original size:19 final size:19
Alignment explanation
Indices: 7400678--7400729 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
7400668 ATATTTCTTT
7400678 TTTTCTCTTTTTTCTTTTC
1 TTTTCTCTTTTTTCTTTTC
7400697 TTTTCT-TTTATTTCTTTTC
1 TTTTCTCTTT-TTTCTTTTC
*
7400716 TTTCTTTCTTTTTT
1 TTT-TCTCTTTTTT
7400730 GCTATTGAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 18 0.62
20 5 0.17
21 3 0.10
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTCTCTTTTTTCTTTTC
Found at i:7400728 original size:14 final size:14
Alignment explanation
Indices: 7400671--7400728 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 14
7400661 TCTTCGAATA
* *
7400671 TTTCTTTTTTTCTC
1 TTTCTTTCTTTCTT
7400685 TTT-TTTCTTT-TCT
1 TTTCTTTCTTTCT-T
*
7400698 TTTCTTTTATTTC-T
1 TTTC-TTTCTTTCTT
7400712 TTTCTTTCTTTCTT
1 TTTCTTTCTTTCTT
7400726 TTT
1 TTT
7400729 TGCTATTGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
12 1 0.03
13 16 0.46
14 12 0.34
15 6 0.17
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTCTTTCTT
Found at i:7405443 original size:3 final size:3
Alignment explanation
Indices: 7405435--7405487 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
7405425 CTTTAATTAC
*
7405435 ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7405483 ATT AT
1 ATT AT
7405488 AAGAATAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7406949 original size:19 final size:20
Alignment explanation
Indices: 7406906--7406951 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7406896 TACTATGCTG
* **
7406906 GAAATTAATGTTTTAGTGTT
1 GAAATTGATGTTAGAGTGTT
7406926 GAAATTGATGTTAGAGTG-T
1 GAAATTGATGTTAGAGTGTT
7406945 GAAATTG
1 GAAATTG
7406952 GATTATTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (20 bp):
GAAATTGATGTTAGAGTGTT
Found at i:7408592 original size:49 final size:49
Alignment explanation
Indices: 7408532--7408945 Score: 623
Period size: 49 Copynumber: 8.4 Consensus size: 49
7408522 AAATACATCG
*
7408532 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCT
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
*
7408581 TTATACATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
*
7408630 TTATGCATTTAACTTGCATTGGTGGCACCTTTCTGCCAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* * *
7408679 TTATGCATTTAACTTGCATTGGTGGCACCTTTTTGCAAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* *
7408728 TTATGCATTTAACTTGCATTAGTGGCACATTTCTGCAAAAAATGCACCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* * * *
7408777 TTAT-CAATTTAAATTGCATTAGTGTCACCTTTATGCCAAAAATGCACCT
1 TTATGC-ATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
** *
7408826 TTATGCATTTAACTTGCATTAGTGGGTCCTTTCTGCCAAAAAATGCATCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCC-AAAAATGCACCA
* * *
7408876 TTATGCATTTAACTTGCATTAGTGGCATCTTTCTGCCAAAAATACATCA
1 TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
* *
7408925 TTCTGAATTTAACTTGCATTA
1 TTATGCATTTAACTTGCATTA
7408946 TAGAGCAGTT
Statistics
Matches: 334, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
48 1 0.00
49 288 0.86
50 45 0.13
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (49 bp):
TTATGCATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCA
Found at i:7412762 original size:20 final size:20
Alignment explanation
Indices: 7412737--7412786 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
7412727 GAGAAAAATT
7412737 GGAAATTAGAAGGTTTTAGG
1 GGAAATTAGAAGGTTTTAGG
7412757 GGAAATTAGAAGGTTTTAGG
1 GGAAATTAGAAGGTTTTAGG
7412777 GGAAATTAGA
1 GGAAATTAGA
7412787 TATAAATTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.34, T:0.28
Consensus pattern (20 bp):
GGAAATTAGAAGGTTTTAGG
Found at i:7413813 original size:18 final size:18
Alignment explanation
Indices: 7413790--7413833 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
7413780 AACATTCCCA
**
7413790 GTAATCTTATTCCTGCTG
1 GTAATCTTATTCCCACTG
7413808 GTAATC-TATTCCCACTG
1 GTAATCTTATTCCCACTG
7413825 GTAATCTTA
1 GTAATCTTA
7413834 CATTCTGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (18 bp):
GTAATCTTATTCCCACTG
Found at i:7415452 original size:60 final size:60
Alignment explanation
Indices: 7415341--7415476 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 60
7415331 ATAACCAAGT
* *
7415341 GACCATTTT-TAACTTTTAATAGTCGAGGGACTCAACAAAGTAACTCCCTATAGTTGAGG
1 GACCATTTTGTAACTTTTAATAGTCAAGAGACTCAACAAAGTAACTCCCTATAGTTGAGG
* * ** *
7415400 GATCATTTTGTAACTTTTAATAGTCAAGAGACTCAATAAAGTAA-TATTCTATAGTTGTGG
1 GACCATTTTGTAACTTTTAATAGTCAAGAGACTCAACAAAGTAACT-CCCTATAGTTGAGG
7415460 GACCATTTGTGT-ACTTT
1 GACCATTT-TGTAACTTT
7415477 ATCATTTAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 9 0.14
60 54 0.82
61 3 0.05
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36
Consensus pattern (60 bp):
GACCATTTTGTAACTTTTAATAGTCAAGAGACTCAACAAAGTAACTCCCTATAGTTGAGG
Found at i:7430817 original size:77 final size:76
Alignment explanation
Indices: 7430677--7430819 Score: 241
Period size: 77 Copynumber: 1.9 Consensus size: 76
7430667 CCCCAAAAAA
* * *
7430677 TTTTATTATTAAAGAATAATGGGATAATTACTATTTAGGCTTTTAAATTTTAATTTATTTTGATT
1 TTTTATCATTAAAGAATAATGGGACAATTACTATTTAGGCCTTTAAATTTTAATTTATTTTGATT
7430742 TGACCCCAAAG
66 TGACCCCAAAG
*
7430753 TTTTATCATTAAAGAATAATGGGACAATTACCTATTTGGGCCTTTAAATTTTAATTTATTTTGAT
1 TTTTATCATTAAAGAATAATGGGACAATTA-CTATTTAGGCCTTTAAATTTTAATTTATTTTGAT
7430818 TT
65 TT
7430820 TGCCTCCTCA
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
76 28 0.45
77 34 0.55
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (76 bp):
TTTTATCATTAAAGAATAATGGGACAATTACTATTTAGGCCTTTAAATTTTAATTTATTTTGATT
TGACCCCAAAG
Found at i:7434144 original size:90 final size:90
Alignment explanation
Indices: 7434011--7434200 Score: 326
Period size: 90 Copynumber: 2.1 Consensus size: 90
7434001 ATAATCCCGA
* *
7434011 ATATAAAAGGATTATTAAATTCCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAT
1 ATATAAAAGGATTATTAAATTCCAATTAATTAAATATAGATTTAATGAATTTGAAATAATAAAAA
*
7434076 CCTTAATATGATTAGGGTAACTTGG
66 CCCTAATATGATTAGGGTAACTTGG
* *
7434101 ATATAAAAGGATTATTAAATTCTAATTAATTAAATATATATTTAATGAATTTGAAATAATAAAAA
1 ATATAAAAGGATTATTAAATTCCAATTAATTAAATATAGATTTAATGAATTTGAAATAATAAAAA
7434166 CCCTAATATGATTAGGGTAACTTGG
66 CCCTAATATGATTAGGGTAACTTGG
*
7434191 CTATAAAAGG
1 ATATAAAAGG
7434201 GTGTGTTAGG
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 94 1.00
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (90 bp):
ATATAAAAGGATTATTAAATTCCAATTAATTAAATATAGATTTAATGAATTTGAAATAATAAAAA
CCCTAATATGATTAGGGTAACTTGG
Found at i:7437773 original size:21 final size:21
Alignment explanation
Indices: 7437749--7437790 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7437739 GAGAAAAAGT
7437749 AAAAGTTAGA-AATGAAAGAGA
1 AAAAGTTA-ATAATGAAAGAGA
7437770 AAAAGTTAATAATGAAAGAGA
1 AAAAGTTAATAATGAAAGAGA
7437791 GAAGAAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.62, C:0.00, G:0.21, T:0.17
Consensus pattern (21 bp):
AAAAGTTAATAATGAAAGAGA
Found at i:7437786 original size:26 final size:27
Alignment explanation
Indices: 7437731--7437806 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
7437721 GAATATGAAT
7437731 AAATGAGAGAGAAAAAG-TAAAAGTTAG
1 AAATGAGAGAGAAAAAGTTAAAAG-TAG
*
7437758 AAATGAAAGAGAAAAAGTTAATAA-T-G
1 AAATGAGAGAGAAAAAGTTAA-AAGTAG
7437784 AAA-GAGAGAAGAAAAAGTTAAAA
1 AAATGAGAG-AGAAAAAGTTAAAA
7437807 AAAATTGAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
25 6 0.14
26 16 0.36
27 17 0.39
28 3 0.07
29 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.14
Consensus pattern (27 bp):
AAATGAGAGAGAAAAAGTTAAAAGTAG
Found at i:7443959 original size:25 final size:26
Alignment explanation
Indices: 7443931--7444002 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 26
7443921 CAAGTAATAA
7443931 AGTGATGAGTG-AA-TATCATCTCCAC
1 AGTGATGAGTGAAATTA-CATCTCCAC
*
7443956 AGTGATTGGGTGAAATTACATCTCCAC
1 AGTGA-TGAGTGAAATTACATCTCCAC
*
7443983 AGTGATTGGGTGAAATTACA
1 AGTGA-TGAGTGAAATTACA
7444003 AAAGTCTAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 5 0.12
26 5 0.12
27 31 0.72
28 2 0.05
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (26 bp):
AGTGATGAGTGAAATTACATCTCCAC
Found at i:7443979 original size:27 final size:27
Alignment explanation
Indices: 7443947--7444002 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
7443937 GAGTGAATAT
7443947 CATCTCCACAGTGATTGGGTGAAATTA
1 CATCTCCACAGTGATTGGGTGAAATTA
7443974 CATCTCCACAGTGATTGGGTGAAATTA
1 CATCTCCACAGTGATTGGGTGAAATTA
7444001 CA
1 CA
7444003 AAAGTCTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (27 bp):
CATCTCCACAGTGATTGGGTGAAATTA
Found at i:7447867 original size:23 final size:23
Alignment explanation
Indices: 7447841--7447886 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7447831 AATAACCAAG
*
7447841 ATAAA-CTTAAATCTACCATTAAA
1 ATAAAGCTTAAA-CAACCATTAAA
*
7447864 ATAAAGTTTAAACAACCATTAAA
1 ATAAAGCTTAAACAACCATTAAA
7447887 CCAACCACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.28
Consensus pattern (23 bp):
ATAAAGCTTAAACAACCATTAAA
Found at i:7459735 original size:21 final size:20
Alignment explanation
Indices: 7459711--7459757 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
7459701 CCCTATTATT
7459711 GATACT-GACCCTCTGAATATC
1 GATACTAGACCC-C-GAATATC
*
7459732 GATACTAGACCCCGAGTATC
1 GATACTAGACCCCGAATATC
7459752 GATACT
1 GATACT
7459758 CCTTGAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 12 0.50
21 7 0.29
22 5 0.21
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GATACTAGACCCCGAATATC
Found at i:7461832 original size:25 final size:23
Alignment explanation
Indices: 7461788--7461833 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
7461778 AATATAATTG
7461788 AATTTAAAATTCAATTAATGAGA
1 AATTTAAAATTCAATTAATGAGA
*
7461811 AATTCTAAAATTACCATTAATGA
1 AATT-TAAAATT-CAATTAATGA
7461834 ACCTTGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 7 0.35
25 9 0.45
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.35
Consensus pattern (23 bp):
AATTTAAAATTCAATTAATGAGA
Found at i:7468891 original size:21 final size:22
Alignment explanation
Indices: 7468842--7468892 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
7468832 ATAAAGGCTT
7468842 AAAGGATGTGACTCTTCAAGAATC
1 AAAGGATGTGACTCTTC-A-AATC
* *
7468866 TAAGGTTGTGACTCTTC-AATC
1 AAAGGATGTGACTCTTCAAATC
7468887 AAAGGA
1 AAAGGA
7468893 CATGATCTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 8 0.35
24 15 0.65
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (22 bp):
AAAGGATGTGACTCTTCAAATC
Found at i:7470842 original size:13 final size:13
Alignment explanation
Indices: 7470809--7470847 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7470799 AATTTTATCC
* *
7470809 CTTTCATTTATAT
1 CTTTCATTTCTTT
7470822 CATTTCATTTCTTT
1 C-TTTCATTTCTTT
7470836 CTTTCATTTCTT
1 CTTTCATTTCTT
7470848 ACTTAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (13 bp):
CTTTCATTTCTTT
Found at i:7472330 original size:13 final size:13
Alignment explanation
Indices: 7472312--7472352 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
7472302 ATTTTACATT
7472312 ATATTATATATTA
1 ATATTATATATTA
*
7472325 ATATTATAT-GTA
1 ATATTATATATTA
*
7472337 TTA-TATATATTA
1 ATATTATATATTA
7472349 ATAT
1 ATAT
7472353 AAAATATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
11 5 0.23
12 8 0.36
13 9 0.41
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (13 bp):
ATATTATATATTA
Found at i:7472361 original size:41 final size:39
Alignment explanation
Indices: 7472276--7472402 Score: 100
Period size: 39 Copynumber: 3.2 Consensus size: 39
7472266 TTATATGTGC
*
7472276 ATATATATATATAATTATTGTATTATAT-T-TTACAT-TATA
1 ATATATATA-AT-ATTATTGTATTATATATATTA-ATATAAA
*
7472315 TTATATATTAATATTATATGTATTATATATATTAATATAAA
1 ATATATA-TAATATTAT-TGTATTATATATATTAATATAAA
* * * *
7472356 ATATATATAAT-GTATGTTTTTTATATCATATTAAGTATCAA
1 ATATATATAATATTAT-TGTATTATAT-ATATTAA-TATAAA
7472397 ATATAT
1 ATATAT
7472403 TTTATATGGA
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
38 5 0.07
39 29 0.40
40 16 0.22
41 23 0.32
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (39 bp):
ATATATATAATATTATTGTATTATATATATTAATATAAA
Found at i:7472507 original size:34 final size:36
Alignment explanation
Indices: 7472432--7472507 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 36
7472422 ATATTAGAAT
* *
7472432 TTATATATATTATAAATTGTTATATTATATTTTATA
1 TTATATATATTATAAATAGTTATATTATATTATATA
* *
7472468 ATATATATA-TATAATATAG-TAT-TTATATTATATG
1 TTATATATATTATAA-ATAGTTATATTATATTATATA
7472502 TTATAT
1 TTATAT
7472508 TGTAATATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
34 15 0.44
35 8 0.24
36 11 0.32
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (36 bp):
TTATATATATTATAAATAGTTATATTATATTATATA
Found at i:7472993 original size:23 final size:23
Alignment explanation
Indices: 7472967--7473016 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
7472957 ATCAAGTTCA
*
7472967 ATAACATATTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
** * *
7472990 ATAATGTAATAGGTTGTGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
7473013 ATAA
1 ATAA
7473017 TAAAATAAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:7473099 original size:87 final size:87
Alignment explanation
Indices: 7472939--7473099 Score: 250
Period size: 87 Copynumber: 1.9 Consensus size: 87
7472929 TATGTTATAT
* *
7472939 CATTTAACCGGAAATATCATCAAGTTCAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATCATCAAGTACAATAACATATTAGGTAGAGCTTATATAATGTAATAGGT
* **
7473004 TGTGCTTATATAATAAAATAAA
66 AGCACTTATATAATAAAATAAA
* **
7473026 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGATTTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATCATCAAGTACAATAACATATTAGGTAGAGCTTATATAATGTAATAGGT
7473091 AGCACTTAT
66 AGCACTTAT
7473100 GTTGACCTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 66 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (87 bp):
CATTTAACCGGAAATATCATCAAGTACAATAACATATTAGGTAGAGCTTATATAATGTAATAGGT
AGCACTTATATAATAAAATAAA
Found at i:7473436 original size:199 final size:201
Alignment explanation
Indices: 7473096--7473507 Score: 566
Period size: 198 Copynumber: 2.1 Consensus size: 201
7473086 TAGGTAGCAC
* *
7473096 TTATGTTGACCTATTTTCTAACTAAAACGGTTTATTTATACTCGATAACATTGGAAATTTACCTA
1 TTATGTTGACCTATTCTCTAACTAAAACGGTATATTTATACTCGATAACATTGGAAATTTACCTA
* *
7473161 TTACATTATAATTATCGGTTTCGATGTTTTTGGGATCGATACAATTTTAAATGTATCAACACTTT
66 TTACATCATAATTATCGATTTCGATGTTTTTGGGATCGATACAATTTTAAATGTATCAACACTTT
* * * * *
7473226 ATGCGTGCACCTCA-TTACGCATTCATTCTGGA-AAAAAGTATCGACACATATTTAAAAAGTGTT
131 ATGCGTGCACCTCATTTACGCATTCATTATGGACAAAAAGTATCGAAACAAATTCAAAAAGTGTC
7473289 GATACA
196 GATACA
* * *
7473295 TTATGTTGACCTATTCTCTCA-TAAAACTGGTATATTTATAC-C-AGTTACATTGTAAATTTACC
1 TTATGTTGACCTATTCTCTAACTAAAAC-GGTATATTTATACTCGA-TAACATTGGAAATTTACC
* *
7473357 TATTACATCATAATTATCGATTTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACA
64 TATTACATCATAATTATCGATTTCGATGTTTTTGGGATCGATACAATTT--TAAATGTATCAACA
** * * *
7473421 CTTTATGCGTGCACCTCATTTGGGCATTCATTATGGACAATAAGTATCGAAACAAATTCCACAAG
127 CTTTATGCGTGCACCTCATTTACGCATTCATTATGGACAAAAAGTATCGAAACAAATTCAAAAAG
7473486 TGTCGATACA
192 TGTCGATACA
*
7473496 TTATGTTTACCT
1 TTATGTTGACCT
7473508 GTTTTGTAAT
Statistics
Matches: 187, Mismatches: 20, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
197 4 0.02
198 65 0.35
199 62 0.33
200 15 0.08
201 41 0.22
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.38
Consensus pattern (201 bp):
TTATGTTGACCTATTCTCTAACTAAAACGGTATATTTATACTCGATAACATTGGAAATTTACCTA
TTACATCATAATTATCGATTTCGATGTTTTTGGGATCGATACAATTTTAAATGTATCAACACTTT
ATGCGTGCACCTCATTTACGCATTCATTATGGACAAAAAGTATCGAAACAAATTCAAAAAGTGTC
GATACA
Found at i:7476188 original size:19 final size:19
Alignment explanation
Indices: 7476164--7476209 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7476154 ACATTCACAA
7476164 ACAAAATTATAAATCGTAT
1 ACAAAATTATAAATCGTAT
*
7476183 ACAAAATTATGAATCGTAT
1 ACAAAATTATAAATCGTAT
*
7476202 AAAAAATT
1 ACAAAATT
7476210 TCCCCTACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (19 bp):
ACAAAATTATAAATCGTAT
Found at i:7478460 original size:198 final size:199
Alignment explanation
Indices: 7477784--7478940 Score: 1469
Period size: 198 Copynumber: 5.8 Consensus size: 199
7477774 GGGTAATTTA
* * * *
7477784 AAAAAGTATCGACACAAGTT-TAAACAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACC
1 AAAAAGTATCGACACAAATTCCACA-AGTGTCGATACATGATGTAGACCTATTTTCTAATTAACC
* * *
7477848 GGTATATTTCTACCGGTTACATTGGAAATTTACCTATTACATTATATTTATCGGTTTCGATGTTT
65 GGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTT
* * * * * * * ** * *
7477913 ATGGGATCGATA-ATTTTTATAAATCTATCAACACTTTATTCGTACACCCCGTTAGACATTCTTT
130 TTGGGATCGATACA-ATTTATAAATGTATCAACACTTTATGCATGCACTCTTTTAGGCATTCATT
*
7477977 CTGGTC
194 CTGGAC
* ** * * * *
7477983 AAAAATTATCGACACAAATTTAAAAAGTGTCGATACATTATGTATACCTATTTTCTAATTAATCG
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATGATGTAGACCTATTTTCTAATTAACCG
* *
7478048 ATATATTTCTACCGATTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
66 GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
* *
7478113 TGGGATCGATACAATTT-TAAATGTATCGACACTTTATGC--GTACTCTTTTAGGCATTCATTCT
131 TGGGATCGATACAATTTATAAATGTATCAACACTTTATGCATGCACTCTTTTAGGCATTCATTCT
7478175 GGA-
196 GGAC
*
7478178 AAAAATGTATCGACACAAATTCCACAAGTGTCAATACATGATGTAGACCTATTTTCTAATTAACC
1 AAAAA-GTATCGACACAAATTCCACAAGTGTCGATACATGATGTAGACCTATTTTCTAATTAACC
* *
7478243 GGTATATTTCTACCGGTTACATTGTAAAGTTACTTATTACATAATAATTATCGGTTTCGATGTTT
65 GGTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTT
7478308 TTGGGATCGATACAATTT-TAAATGTATCAACACTTTATGCATGCACTCTTTTAGGCATTCATTC
130 TTGGGATCGATACAATTTATAAATGTATCAACACTTTATGCATGCACTCTTTTAGGCATTCATTC
7478372 TGGAC
195 TGGAC
* * * *
7478377 AAAAAGTATCAACATAAATTCCACAAGTGTCGATACATGATGTAGACATATTCTCTAATTAACCG
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATGATGTAGACCTATTTTCTAATTAACCG
7478442 GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
66 GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
*
7478507 TGGGATAGATACAATTT-TAAATGTATCGAA-ACTTTATGCATGCACTCTTTTAGGCATTCATTC
131 TGGGATCGATACAATTTATAAATGTATC-AACACTTTATGCATGCACTCTTTTAGGCATTCATTC
7478570 TGGAC
195 TGGAC
* * *
7478575 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATGATGTAGACATATTCTCTAATTAACTG
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATGATGTAGACCTATTTTCTAATTAACCG
** * * * * * *
7478640 GTATATTTCTGTCGGTTACATTGGAAATTTACCTATTACATTATATTTGTCAGTTTCGATATTTT
66 GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
* *** * * * *
7478705 TAGGATCGATATGTTTTATAAATGTATCGACACTTTATTCGTGCACT-TTGTT-GCGTATTCATT
131 TGGGATCGATACAATTTATAAATGTATCAACACTTTATGCATGCACTCTT-TTAG-GCATTCATT
*
7478768 CTGGTC
194 CTGGAC
* ** * * *
7478774 AAAATGTATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATTAACCA
1 AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATGATGTAGACCTATTTTCTAATTAACCG
* * * * * * *
7478839 ATAAATATCTACTGGTTATATTGTAAATTTACCTATTACATTATAATTATC-TTATTCGAT-TTT
66 GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGT-TTCGATGTTT
* * * *
7478902 TAGGGATTGATAC-TTTTAATAAATGTATCGACACTTTAT
130 TTGGGATCGATACAATTT-ATAAATGTATCAACACTTTAT
7478941 TCGTGCACCT
Statistics
Matches: 855, Mismatches: 90, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
195 5 0.01
196 169 0.20
197 4 0.00
198 395 0.46
199 278 0.33
200 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (199 bp):
AAAAAGTATCGACACAAATTCCACAAGTGTCGATACATGATGTAGACCTATTTTCTAATTAACCG
GTATATTTCTACCGGTTACATTGTAAAGTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
TGGGATCGATACAATTTATAAATGTATCAACACTTTATGCATGCACTCTTTTAGGCATTCATTCT
GGAC
Found at i:7482799 original size:15 final size:15
Alignment explanation
Indices: 7482758--7482807 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 15
7482748 GAAGAAGTGA
*
7482758 TTGGTTGAGAAGGAGG
1 TTGGTTGAGAA-GAGC
7482774 TTGTCGTTGAGAAGAGC
1 TTG--GTTGAGAAGAGC
7482791 TTGGTTGAGAAGAGC
1 TTGGTTGAGAAGAGC
7482806 TT
1 TT
7482808 TGAGAAAGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 14 0.45
16 3 0.10
17 6 0.19
18 8 0.26
ACGTcount: A:0.24, C:0.06, G:0.40, T:0.30
Consensus pattern (15 bp):
TTGGTTGAGAAGAGC
Found at i:7483480 original size:201 final size:201
Alignment explanation
Indices: 7483131--7483530 Score: 640
Period size: 201 Copynumber: 2.0 Consensus size: 201
7483121 CGAAATTTTA
* * * * *
7483131 AAAAGTATCGACACAAATTTAAAAAGTGTTGATACATTATGTAGACTTATTCTCTCTTAAAATTG
1 AAAAGTATCGACACAAATTTAAAAAATGTCGATACATTATGTAGACCTATTCTCTCATAAAACTG
* * * * *
7483196 GTATATTTATTCTGGTTACATTGGAAATTTACCTATTACATTTTAATTATCGGTTTCGAAGTTTT
66 GTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATCGGTTTCGAAGTTTT
* * *
7483261 TGGGATCGATAATTTTTATAAATGTATAGACACTTTATGCGTGCACCTAGTTTGGACATTCTTTC
131 TGGGATCGATAATTTTTATAAATATATAGACACTTTATGCATGCACCTAGTTTGGACATTCATTC
7483326 TGGATG
196 TGGATG
7483332 AAAAGTATCGACACAAATTTAAAAAATGTCGATACATTATGTAGACCTATTCTCTCATAAAACTG
1 AAAAGTATCGACACAAATTTAAAAAATGTCGATACATTATGTAGACCTATTCTCTCATAAAACTG
7483397 GTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATCGGTTTC-AATGTTT
66 GTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATCGGTTTCGAA-GTTT
* * *
7483461 TTGGGATCGATACTTTTTATAAATATATCGACACTTTATGCATGCACCTAGTTTGGGCATTCATT
130 TTGGGATCGATAATTTTTATAAATATATAGACACTTTATGCATGCACCTAGTTTGGACATTCATT
7483526 CTGGA
195 CTGGA
7483531 CAAAAAGTGT
Statistics
Matches: 182, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
200 2 0.01
201 180 0.99
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (201 bp):
AAAAGTATCGACACAAATTTAAAAAATGTCGATACATTATGTAGACCTATTCTCTCATAAAACTG
GTATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATAATTATCGGTTTCGAAGTTTT
TGGGATCGATAATTTTTATAAATATATAGACACTTTATGCATGCACCTAGTTTGGACATTCATTC
TGGATG
Found at i:7483718 original size:180 final size:179
Alignment explanation
Indices: 7483292--7483836 Score: 649
Period size: 180 Copynumber: 3.0 Consensus size: 179
7483282 ATGTATAGAC
* * * ** * *
7483292 ACTTTATGCGTGCACCTAGTTTGGACATTCTTTCTGGATGAAAAGTATCGACACAAATTTAAAAA
1 ACTTTATGCGTGCACATAGTTTCGACATTCATTCTGGACCAAAAGTATCGATACAAACTTAAAAA
*
7483357 ATGTCGATACATTATGTAGACCTATTCTCTCATAAAA-CTGGTATATTTATACCGGTTACATTGA
66 GTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC-GGTATATTTATACCGGTTACATTGA
*
7483421 AAAATTACCTATTACATTATAATTATCGGTTTCAATGTTTTTGGGATCGAT
130 AAAATTACCTATTACATTATAATTAT-GGTTTCGATGTTTTTGGGATCGAT
** * * * * * * * * * **
7483472 ACTTT-T---TATAAATA-TATCGACACTTTATGCATGCACC--TAGTTTGGGCATTCATTCTGG
1 ACTTTATGCGTGCACATAGTTTCGACA-TTCATTC-TGGACCAAAAGTAT-CG-ATACAAACT--
* * *
7483530 ACAAAAAGTGTCGATACATTATGTAAACCTATTCTCTCTTAAAATCGGTATATTTATACCGGTTA
60 -TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATACCGGTTA
*
7483595 CATTGAAAAATTATCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGATCGAT
124 CATTGAAAAATTACCTATTACATTATAATTATG-GTTTCGATGTTTTTGGGATCGAT
7483652 ACTTTATGCGTGCACATAGTTTC-AGCATTCATTCTGGACCAAAAGTATCGATACAAACTTAAAA
1 ACTTTATGCGTGCACATAGTTTCGA-CATTCATTCTGGACCAAAAGTATCGATACAAACTTAAAA
* * *
7483716 AGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATGCCAGTTACTTTGA
65 AGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATACCGGTTACATTGA
*
7483781 AAAACTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGAT
130 AAAATTACCTATTACATTATAATTAT-GGTTTCGATGTTTTTGGGATCGAT
7483832 ACTTT
1 ACTTT
7483837 TTATAAATGT
Statistics
Matches: 300, Mismatches: 47, Indels: 36
0.78 0.12 0.09
Matches are distributed among these distances:
175 10 0.03
176 9 0.03
177 7 0.02
179 2 0.01
180 237 0.79
181 3 0.01
183 11 0.04
184 12 0.04
185 9 0.03
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.38
Consensus pattern (179 bp):
ACTTTATGCGTGCACATAGTTTCGACATTCATTCTGGACCAAAAGTATCGATACAAACTTAAAAA
GTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATACCGGTTACATTGAA
AAATTACCTATTACATTATAATTATGGTTTCGATGTTTTTGGGATCGAT
Found at i:7483898 original size:180 final size:179
Alignment explanation
Indices: 7483352--7483903 Score: 690
Period size: 180 Copynumber: 3.1 Consensus size: 179
7483342 ACACAAATTT
7483352 AAAAAA-TGTCGATACATTATGTAGACCTATTCTCTCATAAAA-CTGGTATATTTATACCGGTTA
1 AAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC-GGTATATTTATACCGGTTA
* *
7483415 CATTGAAAAATTACCTATTACATTATAATTATCGGTTTCAATGTTTTTGGGATCGATACTTTTTA
65 CATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTA
* *
7483480 TAAATATATCGACACTTTATGCATGCACCTAGTTTGGGCATTCATTCTGGA
130 TAAATGTATTGACACTTTATGC-TGCACCTAGTTTGGGCATTCATTCTGGA
* * *
7483531 CAAAAAGTGTCGATACATTATGTAAACCTATTCTCTCTTAAAATCGGTATATTTATACCGGTTAC
1 AAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATACCGGTTAC
* *
7483596 ATTGAAAAATTATCTATTACATTATAATTATGAGTTTCGATGTTTTTGGGATCGATACTTTATGC
66 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTT-T--
** * * * * * * * * * **
7483661 GTGCACATAGT-TTCAGCA-TTCATTCTGGACCAAAAGTAT-CG-ATACAAACT---
128 -TATAAAT-GTATTGA-CACTTTATGCTGCACC--TAGTTTGGGCATTCATTCTGGA
* * *
7483711 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATGCCAGTTAC
1 AAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATACCGGTTAC
* *
7483776 TTTGAAAAACTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
66 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
7483841 AAATGTATTGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGA
131 AAATGTATTGACACTTTATGC-TGCACCTAGTTTGGGCATTCATTCTGGA
*
7483891 AAAAAAGTATCGA
1 AAAAAAGTGTCGA
7483904 CACAAACTTA
Statistics
Matches: 309, Mismatches: 46, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
175 8 0.03
176 13 0.04
177 11 0.04
179 6 0.02
180 239 0.77
181 2 0.01
183 11 0.04
184 12 0.04
185 7 0.02
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (179 bp):
AAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATACCGGTTAC
ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
AAATGTATTGACACTTTATGCTGCACCTAGTTTGGGCATTCATTCTGGA
Found at i:7484004 original size:201 final size:201
Alignment explanation
Indices: 7483646--7484859 Score: 1888
Period size: 201 Copynumber: 6.0 Consensus size: 201
7483636 TGTTTTTGGG
* * ** * *
7483646 ATCGATACTTTATGCGTGCACATAGTTTCAGCATTCATTCTGGACCAAAAGTATCGATACAAACT
1 ATCGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
* * * *
7483711 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATCGGTATATTTATGCCAGTTAC
66 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTAC
* *
7483776 TTTGAAAAACTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
131 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
7483841 AAATGT
196 AAATGT
* *
7483847 ATTGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGAAAAAAAGTATCGACACAAACT
1 ATCGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
* * * * *
7483912 TAAAAAGTATCAATACATTATGTAGACCTATTCTCTCTTAAAACTGATATATTTATACTGGTTAC
66 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTAC
* * * * *
7483977 ATTGAAAAATTACCTATTACTTTATAATTATGAGTTTCGATATTTTTGGGATCAATACTTTTCAT
131 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
7484042 AAATGT
196 AAATGT
*
7484048 ATCGACACTTTATGTGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
1 ATCGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
* * * * *
7484113 TAAAAAGTGTTGATACATTATATAGACATTTTCTCTCATAAAACCGGTATATTTATACCGGTTAC
66 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTAC
* * * *
7484178 TTTGAAAAATTATCTATTACATTATAATTATGGGTTTCGATGTTTTCGAGATCGATACTTTTTAT
131 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
7484243 AAATGT
196 AAATGT
* * *
7484249 ATCGATACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGAAAAAAACT
1 ATCGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
* * *
7484314 TAAAAAGTGTCGATACATTATGTAGACCTGTTCTCTCTTAAAACCGATATATTTATACCGGTTTC
66 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTAC
* * * *
7484379 ATTGAAAAATTACCTATTACATTATAATTATGAGTTTCGATGATTTTGGGATCGATGCTTTTCAT
131 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
*
7484444 AAATAT
196 AAATGT
* *
7484450 ATTGACACTTTATGCGTGAACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
1 ATCGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
* *
7484515 TAAAAAGTGTCGATACATTATGTAAACCTATTCTCACATAAAACCGATATATTTATACCGGTTAC
66 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTAC
* *
7484580 ATTGAAAAATTATCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACGTTTTAT
131 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
7484645 AAATGT
196 AAATGT
* * *
7484651 ATCAACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAACGTATCGACACAAATT
1 ATCGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
* * * *
7484716 TAAAAAGTTTCGATACATTATGTAGACCTATTCTCTCATAAAACCGGTCTATTTATGCCGGTTAC
66 TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTAC
* *
7484781 ATTAAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACGTTTTAT
131 ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
7484846 AAATGT
196 AAATGT
7484852 ATCGACAC
1 ATCGACAC
7484860 ATCTGGTTAC
Statistics
Matches: 916, Mismatches: 97, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
201 916 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (201 bp):
ATCGACACTTTATGCGTGCACCTAGTTTGGGCATTCATTCTGGACAAAAAGTATCGACACAAACT
TAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACCGATATATTTATACCGGTTAC
ATTGAAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGATACTTTTTAT
AAATGT
Found at i:7486920 original size:18 final size:18
Alignment explanation
Indices: 7486897--7486931 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7486887 TCCTTCTCAT
7486897 TTCCTCCATCTTTTCTTC
1 TTCCTCCATCTTTTCTTC
*
7486915 TTCCTCCATTTTTTCTT
1 TTCCTCCATCTTTTCTT
7486932 ATTCATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.34, G:0.00, T:0.60
Consensus pattern (18 bp):
TTCCTCCATCTTTTCTTC
Found at i:7487622 original size:22 final size:23
Alignment explanation
Indices: 7487594--7487649 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
7487584 AACCTGCATT
*
7487594 TATAATAAAAT-TTATCATTTTA
1 TATAATAAAATACTATCATTTTA
*
7487616 TATAATAACTATACTATCATTTTA
1 TATAATAA-AATACTATCATTTTA
*
7487640 TATAAAAAAA
1 TATAATAAAA
7487650 CAAAAACGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 8 0.29
23 3 0.11
24 17 0.61
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (23 bp):
TATAATAAAATACTATCATTTTA
Found at i:7490005 original size:162 final size:163
Alignment explanation
Indices: 7489804--7490138 Score: 503
Period size: 162 Copynumber: 2.1 Consensus size: 163
7489794 TCGAGACCAG
* * * * *
7489804 TTTTTTCACATTTTTACCTGTTATTTCGTTATTGATCGATACATTTTTATAAAGTATCAACACTT
1 TTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTCTATAAAGTATCAACACTT
*
7489869 TATAAGCACTATTACTGCTTCTCTTTGAAATTCCCAAAGTGTCGATACGTATATT-AAAGT-ATC
66 TATAAGCACTATTACTGCTTCTCTTTGAAATTCCCAAAGTGTCGATACGTAT-TTCAAACTAATC
* *
7489932 GACACTTTCAATATATCCGGTAGCGCTTTATCGA
130 GACACTTTCAACATATCCGGTAGCGCTTTACCGA
7489966 TTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTCTATAAAGTATCAACACTT
1 TTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTCTATAAAGTATCAACACTT
* ** * * * *
7490031 TATAGGCGTTATTACTGCTTCTCTTTTAAATTCTCAAAGTGTCGATACTTATTTCAATCTAATCG
66 TATAAGCACTATTACTGCTTCTCTTTGAAATTCCCAAAGTGTCGATACGTATTTCAAACTAATCG
*
7490096 ATACTTTCAACATATCCGGTAGCGCTTTACCGA
131 ACACTTTCAACATATCCGGTAGCGCTTTACCGA
7490129 TTTTGTCATA
1 TTTTGTCATA
7490139 ATTAAACCGA
Statistics
Matches: 155, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
161 2 0.01
162 109 0.70
163 44 0.28
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.42
Consensus pattern (163 bp):
TTTTGTCATATTTTTACCTGTTATATCGTTATGGATCGATACATTTCTATAAAGTATCAACACTT
TATAAGCACTATTACTGCTTCTCTTTGAAATTCCCAAAGTGTCGATACGTATTTCAAACTAATCG
ACACTTTCAACATATCCGGTAGCGCTTTACCGA
Found at i:7492837 original size:6 final size:6
Alignment explanation
Indices: 7492826--7492875 Score: 100
Period size: 6 Copynumber: 8.3 Consensus size: 6
7492816 GCCCATGTAT
7492826 CCATCC CCATCC CCATCC CCATCC CCATCC CCATCC CCATCC CCATCC
1 CCATCC CCATCC CCATCC CCATCC CCATCC CCATCC CCATCC CCATCC
7492874 CC
1 CC
7492876 TTCTCCATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.16, C:0.68, G:0.00, T:0.16
Consensus pattern (6 bp):
CCATCC
Found at i:7499102 original size:12 final size:11
Alignment explanation
Indices: 7499059--7499107 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 11
7499049 CCGGATTGTA
7499059 AATATTATATT
1 AATATTATATT
*
7499070 AAAATTATATT
1 AATATTATATT
* *
7499081 ATTATAATTATT
1 AATATTA-TATT
7499093 AATATTATTATT
1 AATATTA-TATT
7499105 AAT
1 AAT
7499108 GTTTCATATT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
11 14 0.45
12 17 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
AATATTATATT
Found at i:7503164 original size:21 final size:21
Alignment explanation
Indices: 7503138--7503255 Score: 204
Period size: 21 Copynumber: 5.6 Consensus size: 21
7503128 CCCTACCAAG
7503138 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
7503159 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
7503180 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
7503201 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
7503222 GAC-ATGAAGACCATTCATAAA
1 GACGA-GAAGACCATTCATAAA
7503243 GAC-ATGAAGACCA
1 GACGA-GAAGACCA
7503256 CTTTGTATTT
Statistics
Matches: 96, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
20 1 0.01
21 95 0.99
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.14
Consensus pattern (21 bp):
GACGAGAAGACCATTCATAAA
Found at i:7507963 original size:55 final size:55
Alignment explanation
Indices: 7507883--7508453 Score: 923
Period size: 55 Copynumber: 10.4 Consensus size: 55
7507873 TTGAAGCATC
7507883 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* *
7507938 AAGATTGTTCGAGTCTTATAGTCTCTAAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
*
7507993 AAGATTGTTTGAGTCTTATACTCTCTGAAGGAATAGGGAG-AGGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCA-GACACGATTGTTG
* * *
7508048 AAGATTGTTCGAGTCTTATACTCTCTAAAGGAATTGGGAGCAGACACGATTATTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* ** * *
7508103 AAGATTGTTCGAGTCTTATACTCTCTAAAGGAATAAAGAGCATACATGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
7508158 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* *
7508213 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCATACACGATTGTTT
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* *
7508268 AAGATTATTCGAATCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
*
7508323 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGAAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * * *
7508378 AAGATTGTTCGATTCTTATACTCTCTAAAGGAATAGGGAGCAGATACGAATGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
7508433 AAGA-TGTTCGAGT-TCTATACT
1 AAGATTGTTCGAGTCT-TATACT
7508454 TCCTGAAAGA
Statistics
Matches: 478, Mismatches: 35, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
53 1 0.00
54 15 0.03
55 461 0.96
56 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (55 bp):
AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
Found at i:7508786 original size:3 final size:3
Alignment explanation
Indices: 7508774--7508806 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7508764 TTATATTAAA
*
7508774 ATT A-T ATT ATT ATT ATT ATT AAT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7508807 ATGTTACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:7512962 original size:21 final size:21
Alignment explanation
Indices: 7512821--7512948 Score: 213
Period size: 21 Copynumber: 6.1 Consensus size: 21
7512811 CCTTACCAAG
7512821 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
7512842 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
7512863 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
* *
7512884 GATGATAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
7512905 GACGAGAAGACCATTCATAAA
1 GACGAGAAGACCATTCATAAA
*
7512926 GAC-ATGAAGACCCTTCATAAA
1 GACGA-GAAGACCATTCATAAA
7512947 GA
1 GA
7512949 AATGAGACCA
Statistics
Matches: 101, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
20 1 0.01
21 100 0.99
ACGTcount: A:0.47, C:0.19, G:0.18, T:0.16
Consensus pattern (21 bp):
GACGAGAAGACCATTCATAAA
Found at i:7517638 original size:55 final size:55
Alignment explanation
Indices: 7517573--7518078 Score: 807
Period size: 55 Copynumber: 9.2 Consensus size: 55
7517563 TTGAAGCATC
*
7517573 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* *
7517628 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGAAGACACGATTATTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * *
7517683 AAGATTGTTCGAGTCTTATACTCTCTAAAAGAATAGGGAGCAGACACGATTGTTA
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * * ** * *
7517738 AAGATTGATCGAGTCTTATACTATCTGACGGAATATAGAGCATACATGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
*
7517793 AAGATTGTTTGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * *
7517848 AAGATTGTTCGAGTCTTATTCTCTCTGAAGGAATAGGGAGCATACACGATTGTTA
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
7517903 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
*
7517958 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGAAGACACGATTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
* * * *
7518013 AAGATTGTTCGAGTCTTATACTCTCTAAAGGAATAGGGAGCACACAAGAGTGTTG
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
7518068 AAGA-TGTTCGA
1 AAGATTGTTCGA
7518079 TTTCTATACT
Statistics
Matches: 412, Mismatches: 39, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
54 7 0.02
55 405 0.98
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (55 bp):
AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTG
Found at i:7518132 original size:110 final size:112
Alignment explanation
Indices: 7517573--7518163 Score: 589
Period size: 110 Copynumber: 5.4 Consensus size: 112
7517563 TTGAAGCATC
*
7517573 AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
* * *
7517638 GAGTCTTATACT-CTCTGAAGGAATAG-GGAGAA-G-ACACGATT-ATTG
66 GAGTC-TATACTCCTCTGAAAGAA-AGAGG-GAACGAACACGATTGGTAG
* * * *
7517683 AAGATTGTTCGAGTCTTATACTCTCTAAAAGAATAGGGAGCAGACACGATTGTTAAAGATTGATC
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
* ** * * * *
7517748 GAGTCTTATACT-ATCTGACGGAATATA--GAGC-ATACATGATT-GTTG
66 GAGTC-TATACTCCTCTGAAAGAA-AGAGGGAACGA-ACACGATTGGTAG
*
7517793 AAGATTGTTTGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
* * * * *
7517858 GAGTCT-TATTCTCTCTG-AAGGAATAGGGAGC-ATACACGATTGTTA-
66 GAGTCTATACTC-CTCTGAAAGAAAGAGGGAACGA-ACACGATTGGTAG
7517903 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
* *
7517968 GAGTCTTATACT-CTCTGAAGGAATAG-GGAGAA-G-ACACGATT-GTTG
66 GAGTC-TATACTCCTCTGAAAGAA-AGAGG-GAACGAACACGATTGGTAG
* * * *
7518013 AAGATTGTTCGAGTCTTATACTCTCTAAAGGAATAGGGAGCACACAAGAGTGTTGAAGA-TGTTC
1 AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
* * *
7518077 GATTTCTATACTCCT-TGAAAGAAAGAGGGAACGAAC-CCATTGGCAG
66 GA-GTCTATACTCCTCTGAAAGAAAGAGGGAACGAACACGATTGGTAG
* * * * *
7518123 AAGACTGTTCGAGT-TCCATACTCCCTGAAGCAAGAGGGAGC
1 AAGATTGTTCGAGTCT-TATACTCTCTGAAGGAATAGGGAGC
7518164 GAACACGTTT
Statistics
Matches: 411, Mismatches: 47, Indels: 46
0.82 0.09 0.09
Matches are distributed among these distances:
108 13 0.03
109 32 0.08
110 353 0.86
111 7 0.02
112 6 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (112 bp):
AAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTC
GAGTCTATACTCCTCTGAAAGAAAGAGGGAACGAACACGATTGGTAG
Found at i:7518423 original size:3 final size:3
Alignment explanation
Indices: 7518411--7518446 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
7518401 TTATATTAAA
7518411 ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7518447 ATGTTACATA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7521426 original size:25 final size:25
Alignment explanation
Indices: 7521370--7521426 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
7521360 TGACGGCGCC
7521370 AACGACGACTCAAAGGTCAAGGAGA
1 AACGACGACTCAAAGGTCAAGGAGA
*
7521395 AATGACGACTCAAAGGTCAAGGAGA
1 AACGACGACTCAAAGGTCAAGGAGA
*
7521420 AGCGACG
1 AACGACG
7521427 CTGCGGCGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.42, C:0.19, G:0.30, T:0.09
Consensus pattern (25 bp):
AACGACGACTCAAAGGTCAAGGAGA
Found at i:7526906 original size:22 final size:22
Alignment explanation
Indices: 7526880--7526923 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7526870 AATACCTAGA
*
7526880 GAAGTACTGATACATTAGAGGG
1 GAAGTACTGATACATCAGAGGG
* *
7526902 GAAGTATTGATACCTCAGAGGG
1 GAAGTACTGATACATCAGAGGG
7526924 TGGTACCGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.11, G:0.32, T:0.23
Consensus pattern (22 bp):
GAAGTACTGATACATCAGAGGG
Found at i:7537480 original size:15 final size:15
Alignment explanation
Indices: 7537462--7537490 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7537452 ATTTCAAATC
7537462 AAATTATTTTAAACA
1 AAATTATTTTAAACA
7537477 AAATTATTTTAAAC
1 AAATTATTTTAAAC
7537491 TAAAGATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (15 bp):
AAATTATTTTAAACA
Found at i:7541072 original size:13 final size:13
Alignment explanation
Indices: 7541054--7541081 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7541044 AAAAAGAAAT
7541054 AAAACCAAATTTA
1 AAAACCAAATTTA
7541067 AAAACCAAATTTA
1 AAAACCAAATTTA
7541080 AA
1 AA
7541082 TGCACAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAACCAAATTTA
Found at i:7541969 original size:3 final size:3
Alignment explanation
Indices: 7541961--7542049 Score: 117
Period size: 3 Copynumber: 29.3 Consensus size: 3
7541951 ATTATTTATT
* **
7541961 TAA TAA TAA TAA T-A TAA TAT TAA TAA TAA CTAA TAA TTT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
*
7542006 TAA TAA TAA TAA TAA TAA TATT TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA T
7542050 TTGGAAACCG
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
2 2 0.03
3 68 0.91
4 5 0.07
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:7542006 original size:28 final size:28
Alignment explanation
Indices: 7541962--7542049 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
7541952 TTATTTATTT
7541962 AATAATAATAAT-ATAATA-TTAATAAT
1 AATAATAATAATAATAATATTTAATAAT
** *
7541988 AACTAATAATTTTAATAATA-ATAATAAT
1 AA-TAATAATAATAATAATATTTAATAAT
* *
7542016 AATAATAATATTTAATAATA-ATAATAAT
1 AATAATAATA-ATAATAATATTTAATAAT
7542044 AATAAT
1 AATAAT
7542050 TTGGAAACCG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 2 0.04
27 15 0.27
28 38 0.69
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (28 bp):
AATAATAATAATAATAATATTTAATAAT
Found at i:7542729 original size:2 final size:2
Alignment explanation
Indices: 7542719--7542757 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7542709 ATATATTCGT
*
7542719 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7542758 GTACTTCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7542914 original size:2 final size:2
Alignment explanation
Indices: 7542907--7542940 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7542897 TATAATAAGT
7542907 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7542941 ATTTACTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7543455 original size:23 final size:23
Alignment explanation
Indices: 7543429--7543474 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7543419 TAAAAATTGA
7543429 GATTCTGATTTTATTT-AATTTAT
1 GATTCT-ATTTTATTTCAATTTAT
* *
7543452 GATTCTTTTTTCTTTCAATTTAT
1 GATTCTATTTTATTTCAATTTAT
7543475 TTTATACGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.63
Consensus pattern (23 bp):
GATTCTATTTTATTTCAATTTAT
Found at i:7544974 original size:42 final size:43
Alignment explanation
Indices: 7544891--7544975 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 43
7544881 TGTCTTTGGA
** * *
7544891 GAAGTTAGGAGTGAAATTTATCCCCTATATGTAAAGTTTTGTT
1 GAAGTTAGGAGTGAAAGATATCCCCTATATATAAAGGTTTGTT
* *
7544934 GAAGTTGGGAGTGAAAGATAT-CCCTATGTATAAAGGTTTGTT
1 GAAGTTAGGAGTGAAAGATATCCCCTATATATAAAGGTTTGTT
7544976 TGATGTACCG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 18 0.50
43 18 0.50
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (43 bp):
GAAGTTAGGAGTGAAAGATATCCCCTATATATAAAGGTTTGTT
Found at i:7545075 original size:8 final size:7
Alignment explanation
Indices: 7545059--7545091 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
7545049 CATGCATTCA
7545059 CATTTTG
1 CATTTTG
7545066 CATCTTTG
1 CAT-TTTG
7545074 CATTTT-
1 CATTTTG
7545080 CATTTTG
1 CATTTTG
7545087 CATTT
1 CATTT
7545092 GTACTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.15, C:0.18, G:0.09, T:0.58
Consensus pattern (7 bp):
CATTTTG
Found at i:7545086 original size:13 final size:15
Alignment explanation
Indices: 7545059--7545091 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
7545049 CATGCATTCA
7545059 CATTTTGCATCTTTG
1 CATTTTGCATCTTTG
7545074 CATTTT-CAT-TTTG
1 CATTTTGCATCTTTG
7545087 CATTT
1 CATTT
7545092 GTACTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.15, C:0.18, G:0.09, T:0.58
Consensus pattern (15 bp):
CATTTTGCATCTTTG
Found at i:7547046 original size:10 final size:10
Alignment explanation
Indices: 7547031--7547066 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
7547021 CTGGTAAAAC
7547031 CAAAAGACCT
1 CAAAAGACCT
*
7547041 CAAAAGAAC-
1 CAAAAGACCT
7547050 CAAAAGACCT
1 CAAAAGACCT
7547060 CAAAAGA
1 CAAAAGA
7547067 ACGAAACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.58, C:0.25, G:0.11, T:0.06
Consensus pattern (10 bp):
CAAAAGACCT
Found at i:7547052 original size:19 final size:19
Alignment explanation
Indices: 7547028--7547068 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7547018 GTACTGGTAA
7547028 AACCAAAAGACCTCAAAAG
1 AACCAAAAGACCTCAAAAG
7547047 AACCAAAAGACCTCAAAAG
1 AACCAAAAGACCTCAAAAG
7547066 AAC
1 AAC
7547069 GAAACTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.59, C:0.27, G:0.10, T:0.05
Consensus pattern (19 bp):
AACCAAAAGACCTCAAAAG
Found at i:7547673 original size:9 final size:9
Alignment explanation
Indices: 7547659--7547703 Score: 63
Period size: 9 Copynumber: 4.8 Consensus size: 9
7547649 TCATCATAAG
7547659 AAAAAAAGA
1 AAAAAAAGA
7547668 AAAAAAAGGA
1 AAAAAAA-GA
*
7547678 AAAAAAGGA
1 AAAAAAAGA
7547687 AAAAAAAGA
1 AAAAAAAGA
7547696 GAAAAAAA
1 -AAAAAAA
7547704 ATTGAATCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
9 17 0.53
10 15 0.47
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:7547674 original size:10 final size:10
Alignment explanation
Indices: 7547659--7547704 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
7547649 TCATCATAAG
7547659 AAAAAAAG-A
1 AAAAAAAGAA
*
7547668 AAAAAAAGGA
1 AAAAAAAGAA
*
7547678 AAAAAAGGAA
1 AAAAAAAGAA
7547688 AAAAAAGAGAA
1 AAAAAA-AGAA
7547699 AAAAAA
1 AAAAAA
7547705 TTGAATCAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
9 8 0.25
10 15 0.47
11 9 0.28
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:7550179 original size:75 final size:75
Alignment explanation
Indices: 7550047--7550187 Score: 246
Period size: 75 Copynumber: 1.9 Consensus size: 75
7550037 AACAAGAAGA
* * * *
7550047 AAATGTTGGGGCATGCTGAAAGCCCATTTCAATCATAATTAGGAATGTTGATGTATTTTGAACGT
1 AAATATTGGGGCATGCTGAAAGCCCATTTCAATCAGAATCAGGAATGTTGATATATTTTGAACGT
7550112 TTGTATCAAC
66 TTGTATCAAC
7550122 AAATATTGGGGCATGCTGAAAGCCCATTTCAATCAGAATCAGGAATGTTGATATATTTTGAACGT
1 AAATATTGGGGCATGCTGAAAGCCCATTTCAATCAGAATCAGGAATGTTGATATATTTTGAACGT
7550187 T
66 T
7550188 GATATATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 62 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.33
Consensus pattern (75 bp):
AAATATTGGGGCATGCTGAAAGCCCATTTCAATCAGAATCAGGAATGTTGATATATTTTGAACGT
TTGTATCAAC
Found at i:7550190 original size:17 final size:17
Alignment explanation
Indices: 7550168--7550209 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
7550158 AATCAGGAAT
7550168 GTTGATATATTTTGAAC
1 GTTGATATATTTTGAAC
7550185 GTTGATATATTTTGAAC
1 GTTGATATATTTTGAAC
*
7550202 GTTCATAT
1 GTTGATAT
7550210 CAGCAAATGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.48
Consensus pattern (17 bp):
GTTGATATATTTTGAAC
Found at i:7551154 original size:54 final size:54
Alignment explanation
Indices: 7551072--7551506 Score: 517
Period size: 54 Copynumber: 8.1 Consensus size: 54
7551062 TTGACTGGAA
* * *
7551072 AACATCTGTGA-AGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTATTACG
1 AACATCTGT-ACAGAAGACACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACG
*
7551126 AACATTTGTACAGAAGACACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACG
1 AACATCTGTACAGAAGACACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACG
* * * * * *
7551180 AACATCTGTGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTATTATG
1 AACATCTGTACAGAAGACACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACG
* * *
7551234 AACATCTGTACAGAAAACACAGGAAAGGATGAATGTGTTATCAAATGTTTTACG
1 AACATCTGTACAGAAGACACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACG
* * * *
7551288 AACATCTGTGCAGAA-ACCACATG-AAAGGATGAATGAGTTGTCAAATATATTACG
1 AACATCTGTACAGAAGA-CACA-GAAAAGGATGAATGTGTTGTCAAATGTTTTACG
* *
7551342 AACATCTATACAGAAGACACA-AGAAAGGATGAATGTGTTGTCAAATGTTCTACG
1 AACATCTGTACAGAAGACACAGA-AAAGGATGAATGTGTTGTCAAATGTTTTACG
*
7551396 AACATCTGTGCAGAA-ACCACATGAAAA-GATGAATGTGTTGTCAAATGTTTTACG
1 AACATCTGTACAGAAGA-CACA-GAAAAGGATGAATGTGTTGTCAAATGTTTTACG
* * * * *
7551450 AACATCTG-AGCAGAAGCCATA-AGAAAGGATGAATGCGTTGCCAAATGTTTTATG
1 AACATCTGTA-CAGAAGACACAGA-AAAGGATGAATGTGTTGTCAAATGTTTTACG
7551504 AAC
1 AAC
7551507 CAGTGATTAT
Statistics
Matches: 330, Mismatches: 38, Indels: 26
0.84 0.10 0.07
Matches are distributed among these distances:
52 1 0.00
53 6 0.02
54 317 0.96
55 5 0.02
56 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (54 bp):
AACATCTGTACAGAAGACACAGAAAAGGATGAATGTGTTGTCAAATGTTTTACG
Found at i:7551261 original size:108 final size:108
Alignment explanation
Indices: 7551072--7551506 Score: 640
Period size: 108 Copynumber: 4.0 Consensus size: 108
7551062 TTGACTGGAA
* * *
7551072 AACATCTGTGAAGAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTATTACGAACATTTGTAC
1 AACATCTGTGCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTATTACGAACATCTGTAC
7551137 AGAAGACAC-AGAAAAGGATGAATGTGTTGTCAAATGTTTTACG
66 AGAAGACACAAG-AAAGGATGAATGTGTTGTCAAATGTTTTACG
* * *
7551180 AACATCTGTGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTATTATGAACATCTGTAC
1 AACATCTGTGCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTATTACGAACATCTGTAC
* * *
7551245 AGAAAACACAGGAAAGGATGAATGTGTTATCAAATGTTTTACG
66 AGAAGACACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACG
* * * *
7551288 AACATCTGTGCAGAAACCACATGAAAGGATGAATGAGTTGTCAAATATATTACGAACATCTATAC
1 AACATCTGTGCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTATTACGAACATCTGTAC
*
7551353 AGAAGACACAAGAAAGGATGAATGTGTTGTCAAATGTTCTACG
66 AGAAGACACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACG
* * *
7551396 AACATCTGTGCAGAAACCACATGAAAAGATGAATGTGTTGTCAAATGTTTTACGAACATCTG-AG
1 AACATCTGTGCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTATTACGAACATCTGTA-
* * * * *
7551460 CAGAAGCCATAAGAAAGGATGAATGCGTTGCCAAATGTTTTATG
65 CAGAAGACACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACG
7551504 AAC
1 AAC
7551507 CAGTGATTAT
Statistics
Matches: 296, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
107 1 0.00
108 294 0.99
109 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (108 bp):
AACATCTGTGCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTATTACGAACATCTGTAC
AGAAGACACAAGAAAGGATGAATGTGTTGTCAAATGTTTTACG
Found at i:7551901 original size:22 final size:23
Alignment explanation
Indices: 7551873--7551930 Score: 93
Period size: 22 Copynumber: 2.6 Consensus size: 23
7551863 TACATCTACA
7551873 TTCTTCAAAGATGATAGATTCT-
1 TTCTTCAAAGATGATAGATTCTC
7551895 TTCTTCAAAGATGATAGATTCTC
1 TTCTTCAAAGATGATAGATTCTC
*
7551918 TT-TTTAAAGATGA
1 TTCTTCAAAGATGA
7551931 AATCTTTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 32 0.94
23 2 0.06
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (23 bp):
TTCTTCAAAGATGATAGATTCTC
Found at i:7552823 original size:116 final size:117
Alignment explanation
Indices: 7552611--7552831 Score: 381
Period size: 116 Copynumber: 1.9 Consensus size: 117
7552601 CCCACATCTG
7552611 TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
1 TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
*
7552676 AGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCA
66 AGGTCATCTGTAAGACCTACAATGCAAGATGATAAGACCTCAGGGCCATCCA
* * *
7552728 TAAGATCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGC-TTTTTGATATTTAAAGCCTCC
1 TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
* *
7552792 GGGTCATCTGTAAGACCTACAATGCAGGATGATAAGACCT
66 AGGTCATCTGTAAGACCTACAATGCAAGATGATAAGACCT
7552832 ACAGTGCAGG
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
116 58 0.59
117 40 0.41
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (117 bp):
TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
AGGTCATCTGTAAGACCTACAATGCAAGATGATAAGACCTCAGGGCCATCCA
Found at i:7552830 original size:22 final size:22
Alignment explanation
Indices: 7552802--7552844 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7552792 GGGTCATCTG
7552802 TAAGACCTACAATGCAGGATGA
1 TAAGACCTACAATGCAGGATGA
*
7552824 TAAGACCTACAGTGCAGGATG
1 TAAGACCTACAATGCAGGATG
7552845 TTTTCAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.19
Consensus pattern (22 bp):
TAAGACCTACAATGCAGGATGA
Found at i:7552846 original size:96 final size:96
Alignment explanation
Indices: 7552727--7552927 Score: 357
Period size: 96 Copynumber: 2.1 Consensus size: 96
7552717 AGGGCCATCC
* *
7552727 ATAAGATCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
1 ATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
*
7552792 GGGTCATCTGTAAGACCTACAATGCAGGATG
66 GGGTCATCTGTAAGACCTACAATGCAAGATG
7552823 ATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
1 ATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
* *
7552888 GGGTCATCTGTAAGACCTACAGTGTAAGATG
66 GGGTCATCTGTAAGACCTACAATGCAAGATG
7552919 ATAAGACCT
1 ATAAGACCT
7552928 CAAGGCCATC
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 100 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (96 bp):
ATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
GGGTCATCTGTAAGACCTACAATGCAAGATG
Found at i:7552983 original size:212 final size:213
Alignment explanation
Indices: 7552611--7553043 Score: 724
Period size: 212 Copynumber: 2.0 Consensus size: 213
7552601 CCCACATCTG
7552611 TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
1 TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
* * *
7552676 AGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCATAAGATCTACAGT
66 AGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAAGGCCATCAATAAGACCTACAGT
* *
7552741 GCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCGGGTCATCTGTAAG
131 GCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCGAGTCATCTGTAAG
*
7552806 ACCTACAATGCAGGATGA
196 ACCTACAATGCAAGATGA
* *
7552824 TAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGC-TTTTTGATATTTAAAGCCTCC
1 TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
* *
7552888 GGGTCATCTGTAAGACCTACAGTGTAAGATGATAAGACCTCAAGGCCATCAATAAGACCTACAGT
66 AGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAAGGCCATCAATAAGACCTACAGT
* * * *
7552953 GCAGGATGTTTTCAAATAGCCTTTGGGAGCTTTTTGATATTTAAATCCTCTGAGTCATCTGTAAG
131 GCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCGAGTCATCTGTAAG
*
7553018 ACCTACAGTGCAAGATGA
196 ACCTACAATGCAAGATGA
7553036 TAAGACCT
1 TAAGACCT
7553044 CAGGGACATC
Statistics
Matches: 205, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
212 164 0.80
213 41 0.20
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (213 bp):
TAAGACCTACAGTGCAAGATCTTTTCAAAAAGCCTTCGGGAGCTTTTTTGATATTTAAAGCCTCC
AGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAAGGCCATCAATAAGACCTACAGT
GCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCGAGTCATCTGTAAG
ACCTACAATGCAAGATGA
Found at i:7553027 original size:116 final size:116
Alignment explanation
Indices: 7552823--7553085 Score: 436
Period size: 116 Copynumber: 2.3 Consensus size: 116
7552813 ATGCAGGATG
*
7552823 ATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
1 ATAAGACCTACAGTGCAGGATGTTTTCAAATAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
* * *
7552888 GGGTCATCTGTAAGACCTACAGTGTAAGATGATAAGACCTCAAGGCCATCA
66 GAGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAAGGACATCA
* * *
7552939 ATAAGACCTACAGTGCAGGATGTTTTCAAATAGCCTTTGGGAGCTTTTTGATATTTAAATCCTCT
1 ATAAGACCTACAGTGCAGGATGTTTTCAAATAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
* *
7553004 GAGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGACATCT
66 GAGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAAGGACATCA
*
7553055 ATAAGACCTCCAGTGCAGGATGTTTTCAAAT
1 ATAAGACCTACAGTGCAGGATGTTTTCAAAT
7553086 GAGATTTTAA
Statistics
Matches: 137, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
116 137 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (116 bp):
ATAAGACCTACAGTGCAGGATGTTTTCAAATAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCC
GAGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAAGGACATCA
Found at i:7553220 original size:20 final size:20
Alignment explanation
Indices: 7553166--7553203 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7553156 GTGCAAGACG
7553166 ATAAGACCTCAGGGCCATCT
1 ATAAGACCTCAGGGCCATCT
7553186 ATAAGACCTCAGGGCCAT
1 ATAAGACCTCAGGGCCAT
7553204 TCATATGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (20 bp):
ATAAGACCTCAGGGCCATCT
Found at i:7553371 original size:3 final size:3
Alignment explanation
Indices: 7553363--7553433 Score: 90
Period size: 3 Copynumber: 23.3 Consensus size: 3
7553353 TATTTTTAAA
* *
7553363 ATT ATT ATT GTT ATT ATT ATT AAAT ATT ATT ATT ATT ATT AATT ATT
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT -ATT ATT
*
7553410 ATT AAT ATT A-T ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
7553434 AATAAATAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
2 2 0.03
3 52 0.88
4 5 0.08
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:7553394 original size:16 final size:16
Alignment explanation
Indices: 7553373--7553437 Score: 80
Period size: 16 Copynumber: 4.0 Consensus size: 16
7553363 ATTATTATTG
7553373 TTATTATTATTAAATA
1 TTATTATTATTAAATA
7553389 TTATTATTATTATTAATTA
1 TTATTATTATTA--AA-TA
*
7553408 TTATTAATATT--ATA
1 TTATTATTATTAAATA
7553422 TTATTATTATTAAATA
1 TTATTATTATTAAATA
7553438 AATAATTACA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
14 12 0.29
15 1 0.02
16 15 0.36
18 2 0.05
19 12 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATTATTATTAAATA
Found at i:7553395 original size:19 final size:19
Alignment explanation
Indices: 7553366--7553433 Score: 95
Period size: 19 Copynumber: 3.7 Consensus size: 19
7553356 TTTTAAAATT
*
7553366 ATTATTGTTATTATTATTA
1 ATTATTATTATTATTATTA
*
7553385 AATATTATTATTATTATTA
1 ATTATTATTATTATTATTA
*
7553404 ATTATTATTAATATTA-T-
1 ATTATTATTATTATTATTA
7553421 ATTATTATTATTA
1 ATTATTATTATTA
7553434 AATAAATAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
17 12 0.27
18 1 0.02
19 31 0.70
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (19 bp):
ATTATTATTATTATTATTA
Found at i:7555003 original size:2 final size:2
Alignment explanation
Indices: 7554996--7555021 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7554986 ATAATAGCTA
7554996 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7555022 TTACTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7556114 original size:17 final size:17
Alignment explanation
Indices: 7556092--7556128 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
7556082 TTTAATGATG
7556092 TTTAATTTCTCTGCATT
1 TTTAATTTCTCTGCATT
7556109 TTTAATTTCTCTGCATT
1 TTTAATTTCTCTGCATT
7556126 TTT
1 TTT
7556129 CTAAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.62
Consensus pattern (17 bp):
TTTAATTTCTCTGCATT
Found at i:7558180 original size:45 final size:45
Alignment explanation
Indices: 7558084--7558442 Score: 535
Period size: 45 Copynumber: 8.0 Consensus size: 45
7558074 ATCAATAAAT
* * * *
7558084 TTACCATTTATCCCATAAGCTCGTAAACTTATTTTTACCAACATAT
1 TTACCATTTATTCCATAAGCTCGTAAGCCTA-TTTTACCAACATAC
* * *
7558130 TTACCATTTATTCCATAAGCTCGTAAGACTATTTTACTAACCTAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
*
7558175 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAATATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* * *
7558220 TTACCA-TTATTCCATAAGCTCATAAGCTTATTTTACCAATATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
7558264 TTACCA-TTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* *
7558308 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
*
7558353 CTACCA-TTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* * *
7558397 TTACTATTTATTCCATAATCTCGTATGCCTATTTTACCAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
7558442 T
1 T
7558443 CAAAATCCTA
Statistics
Matches: 286, Mismatches: 25, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
44 123 0.43
45 136 0.48
46 27 0.09
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (45 bp):
TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
Found at i:7558268 original size:89 final size:89
Alignment explanation
Indices: 7558084--7558442 Score: 533
Period size: 89 Copynumber: 4.0 Consensus size: 89
7558074 ATCAATAAAT
* * * *
7558084 TTACCATTTATCCCATAAGCTCGTAAACTTATTTTTACCAACATATTTACCATTTATTCCATAAG
1 TTACCA-TTATTCCATAAGCTCGTAAGCCTA-TTTTACCAACATACTTACCATTTATTCCATAAG
* *
7558149 CTCGTAAGAC-TATTTTACTAACCTAC
64 CTCGTAAG-CTTATTTTACCAACATAC
*
7558175 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAATATACTTACCA-TTATTCCATAAGC
1 TTACCA-TTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGC
* *
7558239 TCATAAGCTTATTTTACCAATATAC
65 TCGTAAGCTTATTTTACCAACATAC
7558264 TTACCATTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCT
1 TTACCATTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCT
*
7558329 CGTAAGCTTATTTTACCAATATAC
66 CGTAAGCTTATTTTACCAACATAC
* * *
7558353 CTACCATTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACTATTTATTCCATAATCT
1 TTACCATTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCT
* *
7558418 CGTATGCCTATTTTACCAACATAC
66 CGTAAGCTTATTTTACCAACATAC
7558442 T
1 T
7558443 CAAAATCCTA
Statistics
Matches: 248, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
88 44 0.18
89 158 0.64
90 18 0.07
91 28 0.11
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (89 bp):
TTACCATTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCT
CGTAAGCTTATTTTACCAACATAC
Found at i:7558295 original size:133 final size:134
Alignment explanation
Indices: 7558084--7558442 Score: 567
Period size: 133 Copynumber: 2.7 Consensus size: 134
7558074 ATCAATAAAT
* * *
7558084 TTACCATTTATCCCATAAGCTCGTAAACTTATTTTTACCAACATATTTACCATTTATTCCATAAG
1 TTACCA-TTATTCCATAAGCTCGTAAGCTTA-TTTTACCAACATACTTACCATTTATTCCATAAG
* * *
7558149 CTCGTAAGACTATTTTACTAACCTACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCA
64 CTCGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCA
7558214 ATATAC
129 ATATAC
* *
7558220 TTACCATTATTCCATAAGCTCATAAGCTTATTTTACCAATATACTTACCA-TTATTCCATAAGCT
1 TTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAACATACTTACCATTTATTCCATAAGCT
*
7558284 CGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAT
66 CGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAAT
7558349 ATAC
131 ATAC
* * * *
7558353 CTACCATTATTCCATAAGCTCGTAAGCCTATTTTACCAACATACTTACTATTTATTCCATAATCT
1 TTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAACATACTTACCATTTATTCCATAAGCT
*
7558418 CGTATGCCTATTTTACCAACATACT
66 CGTAAGCCTATTTTACCAACATACT
7558443 CAAAATCCTA
Statistics
Matches: 206, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
133 124 0.60
134 55 0.27
135 21 0.10
136 6 0.03
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (134 bp):
TTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAACATACTTACCATTTATTCCATAAGCT
CGTAAGCCTATTTTACCAACATACTTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAAT
ATAC
Found at i:7562231 original size:45 final size:45
Alignment explanation
Indices: 7562135--7562670 Score: 715
Period size: 44 Copynumber: 12.0 Consensus size: 45
7562125 ATCAACAAAT
* * * * *
7562135 TTACCATTTATCCCATAACCTTGTAAACTTATTTTTACCAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTA-TTTTACCAACATAC
*
7562181 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACTAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* *
7562226 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAATATGC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* * *
7562271 TTA-CAATTATTCCATAAGCTCGTAAGCTTATTTTACCAATATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* ** * *
7562315 TTACCA-TTATTCTATAAGCTCGTAAGATTATTTTACTAATATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
*
7562359 TTACCA-TTATTTCATAAGCTCGTAAGCCTATTTTACCAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* *
7562403 TTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTACCAATATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* * * *
7562447 TTA-CAATTATTCTATAAGCTCCTAAGTCTATTTTACCAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* * * *
7562491 TTACCATTTATTCCATAAACTCGTAAGCTTATTTTACCAATACAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* * *
7562536 TTACCA-TTATTACATAAGTTCGTAAGCCTATTTTACGAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
* * **
7562580 TTACCATTTATTCCATAAGCTCTTAAGCTTATTTTACCATTATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
7562625 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
1 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
7562670 T
1 T
7562671 CAAAATCCTA
Statistics
Matches: 431, Mismatches: 55, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
43 2 0.00
44 231 0.54
45 172 0.40
46 26 0.06
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (45 bp):
TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAACATAC
Found at i:7562303 original size:89 final size:89
Alignment explanation
Indices: 7562135--7562670 Score: 779
Period size: 89 Copynumber: 6.0 Consensus size: 89
7562125 ATCAACAAAT
* * * * * *
7562135 TTACCATTTATCCCATAACCTTGTAAACTTATTTTTACCAACATACTTACCATTTATTCCATAAG
1 TTACCATTTATTCCATAAGCTCGTAAGCTTA-TTTTACCAATATACTTA-CAATTATTCCATAAG
*
7562200 CTCGTAAGCCTATTTTACTAACATAC
64 CTCGTAAGCCTATTTTACCAACATAC
* *
7562226 TTACCATTTATTCCATAAGCTCGTAAGCCTATTTTACCAATATGCTTACAATTATTCCATAAGCT
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTATTCCATAAGCT
* *
7562291 CGTAAGCTTATTTTACCAATATAC
66 CGTAAGCCTATTTTACCAACATAC
* * * * *
7562315 TTACCA-TTATTCTATAAGCTCGTAAGATTATTTTACTAATATACTTACCATTATTTCATAAGCT
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTATTCCATAAGCT
7562379 CGTAAGCCTATTTTACCAACATAC
66 CGTAAGCCTATTTTACCAACATAC
*
7562403 TTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTATTCTATAAGCT
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTATTCCATAAGCT
* *
7562467 CCTAAGTCTATTTTACCAACATAC
66 CGTAAGCCTATTTTACCAACATAC
* * * * *
7562491 TTACCATTTATTCCATAAACTCGTAAGCTTATTTTACCAATACACTTACCATTATTACATAAGTT
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTATTCCATAAGCT
*
7562556 CGTAAGCCTATTTTACGAACATAC
66 CGTAAGCCTATTTTACCAACATAC
* * *
7562580 TTACCATTTATTCCATAAGCTCTTAAGCTTATTTTACCATTATACTTACCATTTATTCCATAAGC
1 TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTA-CAATTATTCCATAAGC
7562645 TCGTAAGCCTATTTTACCAACATAC
65 TCGTAAGCCTATTTTACCAACATAC
7562670 T
1 T
7562671 CAAAATCCTA
Statistics
Matches: 397, Mismatches: 46, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
88 159 0.40
89 160 0.40
90 52 0.13
91 26 0.07
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (89 bp):
TTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACAATTATTCCATAAGCT
CGTAAGCCTATTTTACCAACATAC
Found at i:7564108 original size:22 final size:22
Alignment explanation
Indices: 7564080--7564142 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
7564070 GGGTCATCTG
7564080 TAAGACCTACAGTGCAAGATGA
1 TAAGACCTACAGTGCAAGATGA
* * **
7564102 TAAGACCT-CAGGGCCATCT-A
1 TAAGACCTACAGTGCAAGATGA
*
7564122 TAAGACCTACAGTGCAGGATG
1 TAAGACCTACAGTGCAAGATG
7564143 TTTTCAAAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
20 9 0.30
21 13 0.43
22 8 0.27
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TAAGACCTACAGTGCAAGATGA
Found at i:7564125 original size:116 final size:116
Alignment explanation
Indices: 7563890--7564266 Score: 648
Period size: 116 Copynumber: 3.2 Consensus size: 116
7563880 CCCACATCTG
* *
7563890 TAAGACCTACAATGCAAGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTTTATATTTAAAGCCTCC
1 TAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGC-TTTTTGATATTTAAAGCCTCC
* *
7563955 GGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGCCCTCATGG-CATCCA
65 GGGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCA
*
7564006 TAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCG
1 TAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCG
*
7564071 GGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCTA
66 GGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCA
* *
7564122 TAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTAAAGCCTCCG
1 TAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCG
*
7564187 AGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCA
66 GGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCA
*
7564238 TAAGACCTCCAATGCAGGATGTTTTCAAA
1 TAAGACCTACAATGCAGGATGTTTTCAAA
7564267 TGAGATTTTA
Statistics
Matches: 249, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
115 63 0.25
116 186 0.75
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (116 bp):
TAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTAAAGCCTCCG
GGTCATCTGTAAGACCTACAGTGCAAGATGATAAGACCTCAGGGCCATCCA
Found at i:7564535 original size:12 final size:12
Alignment explanation
Indices: 7564520--7564600 Score: 71
Period size: 12 Copynumber: 6.9 Consensus size: 12
7564510 TTTTTTTATT
*
7564520 TTATTTTTAAAA
1 TTATTATTAAAA
**
7564532 TTATTATTATTA
1 TTATTATTAAAA
7564544 TTATTATTAAAA
1 TTATTATTAAAA
*
7564556 TTATTAATTATTAA
1 TTATT-ATTA-AAA
*
7564570 TTATTATTAATA
1 TTATTATTAAAA
7564582 TTA-TATT---A
1 TTATTATTAAAA
7564590 TTATTATTAAA
1 TTATTATTAAA
7564601 TAAATAATTA
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
8 4 0.07
9 4 0.07
11 4 0.07
12 28 0.51
13 8 0.15
14 7 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTATTAAAA
Found at i:7564539 original size:3 final size:3
Alignment explanation
Indices: 7564531--7564598 Score: 84
Period size: 3 Copynumber: 22.3 Consensus size: 3
7564521 TATTTTTAAA
**
7564531 ATT ATT ATT ATT ATT ATT ATT AAA ATT ATT AATT ATT AATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT -ATT ATT ATT
*
7564578 AAT ATT A-T ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
7564599 AATAAATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.04
3 48 0.86
4 6 0.11
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:7564609 original size:38 final size:38
Alignment explanation
Indices: 7564530--7564610 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
7564520 TTATTTTTAA
* * *
7564530 AATTATTATTATTATTATTATTAAAATTATTAATTATT
1 AATTATTATTAATATTATTATTAAAATTATTAATAAAT
**
7564568 AATTATTATTAATATTA-TATTATTATTATTAAATAAAT
1 AATTATTATTAATATTATTATTAAAATTATT-AATAAAT
7564606 AATTA
1 AATTA
7564611 CAAGCCCAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 11 0.30
38 26 0.70
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (38 bp):
AATTATTATTAATATTATTATTAAAATTATTAATAAAT
Found at i:7566523 original size:25 final size:24
Alignment explanation
Indices: 7566483--7566530 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
7566473 TTTAATATTA
7566483 ATCGGGCCGGGTATCGGGTCGGGT
1 ATCGGGCCGGGTATCGGGTCGGGT
*
7566507 ATCGGGGCGGGTAATCGGGTCGGG
1 ATCGGGCCGGGT-ATCGGGTCGGG
7566531 GATTACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.10, C:0.19, G:0.52, T:0.19
Consensus pattern (24 bp):
ATCGGGCCGGGTATCGGGTCGGGT
Found at i:7566525 original size:13 final size:12
Alignment explanation
Indices: 7566483--7566530 Score: 69
Period size: 12 Copynumber: 3.9 Consensus size: 12
7566473 TTTAATATTA
*
7566483 ATCGGGCCGGGT
1 ATCGGGTCGGGT
7566495 ATCGGGTCGGGT
1 ATCGGGTCGGGT
*
7566507 ATCGGGGCGGGT
1 ATCGGGTCGGGT
7566519 AATCGGGTCGGG
1 -ATCGGGTCGGG
7566531 GATTACCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
12 22 0.69
13 10 0.31
ACGTcount: A:0.10, C:0.19, G:0.52, T:0.19
Consensus pattern (12 bp):
ATCGGGTCGGGT
Found at i:7573822 original size:44 final size:44
Alignment explanation
Indices: 7573722--7573823 Score: 134
Period size: 44 Copynumber: 2.3 Consensus size: 44
7573712 TACTGCATAA
* * * * *
7573722 TGTATCAATGCACATTCAAGGAATGCATCGGTACTCCTTCATAG
1 TGTATCGATGCATATTCAAGGAATGCATCAGTACACCTTAATAG
*
7573766 TGTATCGATGCATATTCAA-GAGATGCATCAGTACACTTTAATAG
1 TGTATCGATGCATATTCAAGGA-ATGCATCAGTACACCTTAATAG
7573810 TGTATCGATGCATA
1 TGTATCGATGCATA
7573824 GTGCACAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
43 2 0.04
44 49 0.96
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (44 bp):
TGTATCGATGCATATTCAAGGAATGCATCAGTACACCTTAATAG
Found at i:7577787 original size:65 final size:64
Alignment explanation
Indices: 7577716--7577877 Score: 195
Period size: 65 Copynumber: 2.5 Consensus size: 64
7577706 GAATAAATTG
** * * *
7577716 AACATCGAACACAGTTTATGCATCGATGCACTCTCCATGCATCGATGAAC-TCAGG-TT-TTAAT
1 AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCGATGAACAT-AGGCTTATTAA-
7577778 GA
64 -A
* * *
7577780 AATCATCGATTGCATTTTATGCATCGATGTACACACCATGCATCGATGCACATAGGCTTATTAAA
1 AA-CATCGAATGCATTTTATGCATCGATGCACACACCATGCATCGATGAACATAGGCTTATTAAA
7577845 AACATCGAATGCATTTTATGCATCGATGCACAC
1 AACATCGAATGCATTTTATGCATCGATGCACAC
7577878 TTAGTGCACC
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
64 31 0.37
65 46 0.55
66 3 0.04
67 4 0.05
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (64 bp):
AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCGATGAACATAGGCTTATTAAA
Found at i:7585441 original size:20 final size:20
Alignment explanation
Indices: 7585412--7585469 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
7585402 TTTCAAAGGA
*
7585412 ATGCACCGATGCACCAATCC
1 ATGCATCGATGCACCAATCC
7585432 ATGCATCGATGCACCAATCC
1 ATGCATCGATGCACCAATCC
*
7585452 ATGCATCAATGCACCAAT
1 ATGCATCGATGCACCAAT
7585470 GAATAAATTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.34, G:0.14, T:0.19
Consensus pattern (20 bp):
ATGCATCGATGCACCAATCC
Found at i:7585638 original size:64 final size:64
Alignment explanation
Indices: 7585480--7585641 Score: 175
Period size: 65 Copynumber: 2.5 Consensus size: 64
7585470 GAATAAATTG
* * * * ** *
7585480 AACATCGAATGCAGTTTATGCATCGATGCACTCTCTATGCATTGATGCACTCAAGTTTTAATGAA
1 AACATCGAATGCA-TTTATGCATCGATGCACACACCATGCATCGATGCACTCAAGGCTTAATAAA
* ** *
7585545 AACATC-AATTGCATTTTATGCATCAATGCACACACCATGCATCGATGCACT-TTGGCTTATTAA
1 AACATCGAA-TGCA-TTTATGCATCGATGCACACACCATGCATCGATGCACTCAAGGCTTAATAA
7585608 A
64 A
7585609 AACATCGAATGCATTTGATGCATCGATGCACAC
1 AACATCGAATGCATTT-ATGCATCGATGCACAC
7585642 TTAGTGCACC
Statistics
Matches: 81, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
63 3 0.04
64 34 0.42
65 44 0.54
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.30
Consensus pattern (64 bp):
AACATCGAATGCATTTATGCATCGATGCACACACCATGCATCGATGCACTCAAGGCTTAATAAA
Found at i:7585655 original size:64 final size:63
Alignment explanation
Indices: 7585480--7585659 Score: 175
Period size: 64 Copynumber: 2.8 Consensus size: 63
7585470 GAATAAATTG
* * ** *
7585480 AACATCGAATGCAGTTTATGCATCGATGCACTCTCTATGCATTGATGCACTCAAGTTTTAATGAA
1 AACATCGAATGCA-TTTATGCATCGATGCACACT-TATGCATCGATGCACTCAAGGCTTAATAAA
* ** ** *
7585545 AACATC-AATTGCATTTTATGCATCAATGCACACACCATGCATCGATGCACT-TTGGCTTATTAA
1 AACATCGAA-TGCA-TTTATGCATCGATGCACAC-TTATGCATCGATGCACTCAAGGCTTAATAA
7585608 A
63 A
*
7585609 AACATCGAATGCATTTGATGCATCGATGCACACTTAGTGCACCGATGCACT
1 AACATCGAATGCATTT-ATGCATCGATGCACACTTA-TGCATCGATGCACT
7585660 AAGTGTTCTA
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
63 4 0.04
64 47 0.50
65 43 0.46
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (63 bp):
AACATCGAATGCATTTATGCATCGATGCACACTTATGCATCGATGCACTCAAGGCTTAATAAA
Found at i:7593444 original size:19 final size:19
Alignment explanation
Indices: 7593416--7593458 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
7593406 ATTTATATTT
* * *
7593416 ATTATAATAATATTCATTA
1 ATTATAATAAGATGCATAA
*
7593435 ATTATCATAAGATGCATAA
1 ATTATAATAAGATGCATAA
7593454 ATTAT
1 ATTAT
7593459 TATTATAACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (19 bp):
ATTATAATAAGATGCATAA
Found at i:7600548 original size:21 final size:20
Alignment explanation
Indices: 7600498--7600540 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
7600488 ATTGATTGAG
7600498 AAAATAAAAAAAATGTTAAGA
1 AAAATAAAAAAAATG-TAAGA
7600519 AAAATAAAAAAAATG-AAGA
1 AAAATAAAAAAAATGTAAGA
7600538 AAA
1 AAA
7600541 TGTTAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 7 0.32
21 15 0.68
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (20 bp):
AAAATAAAAAAAATGTAAGA
Found at i:7600604 original size:20 final size:21
Alignment explanation
Indices: 7600577--7600615 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7600567 GCTAATTTAT
7600577 AAAAGAAA-AAA-ATAAAATA
1 AAAAGAAAGAAATATAAAATA
7600596 AAAAGGAAAGAAATATAAAA
1 AAAA-GAAAGAAATATAAAA
7600616 AATTTAGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 3 0.18
22 6 0.35
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (21 bp):
AAAAGAAAGAAATATAAAATA
Found at i:7608710 original size:26 final size:27
Alignment explanation
Indices: 7608647--7608701 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
7608637 GAAAATAACA
*
7608647 AAAATAAATAAATATGAAGAAAATGTT
1 AAAATAAAAAAATATGAAGAAAATGTT
7608674 AAAATAAAAAAAT-TGAAGAAAATGTT
1 AAAATAAAAAAATATGAAGAAAATGTT
7608700 AA
1 AA
7608702 TTTCTAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (27 bp):
AAAATAAAAAAATATGAAGAAAATGTT
Done.