Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 56
Found at i:7608733 original size:12 final size:12
Alignment explanation
Indices: 7608716--7608741 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7608706 TAAAAGAAAT
7608716 AAAAAGGAAAGA
1 AAAAAGGAAAGA
7608728 AAAAAGGAAAGA
1 AAAAAGGAAAGA
7608740 AA
1 AA
7608742 TATAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAAAGGAAAGA
Found at i:7611313 original size:45 final size:46
Alignment explanation
Indices: 7611237--7611341 Score: 158
Period size: 45 Copynumber: 2.3 Consensus size: 46
7611227 GTATCATCAT
* * *
7611237 CACTTTACTATGTATTGGATTCATTAGAGTACAATAGTACCCTAAA
1 CACTCTACTATGTATTGGATTCATGAAAGTACAATAGTACCCTAAA
*
7611283 TACTCTACTATG-ATTGGATTCATGAAAGTACAATAGTACCCTAAA
1 CACTCTACTATGTATTGGATTCATGAAAGTACAATAGTACCCTAAA
*
7611328 CACTCTATTATGTA
1 CACTCTACTATGTA
7611342 CTCAATGAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 41 0.79
46 11 0.21
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (46 bp):
CACTCTACTATGTATTGGATTCATGAAAGTACAATAGTACCCTAAA
Found at i:7625393 original size:14 final size:14
Alignment explanation
Indices: 7625374--7625401 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7625364 CCATTTATAA
7625374 ATTTAAGCATTTAT
1 ATTTAAGCATTTAT
7625388 ATTTAAGCATTTAT
1 ATTTAAGCATTTAT
7625402 GTTTTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
ATTTAAGCATTTAT
Found at i:7629823 original size:70 final size:69
Alignment explanation
Indices: 7629658--7630059 Score: 282
Period size: 70 Copynumber: 5.8 Consensus size: 69
7629648 TCAAATTATG
* * ** *
7629658 TCAAGA-AAA-TGTCTCAAGTGAGAC-AAAAATTTCAA-GAAAATATATCAAACGAGATGAAATT
1 TCAAGAGAAACTGTCTCGAGTGAGACAAAAAATTTCAAGGAAAATATCTCAATGGAGATAAAATT
7629719 TGTT
66 TGTT
** * * * * * * * *
7629723 TTGAGAGAAACCGTTTTGAATGATATAAAAAATTTCAAGGGAAATATCTTAATGGAGATACAAAT
1 TCAAGAGAAACTGTCTCGAGTGAGACAAAAAATTTCAAGGAAAATATCTCAATGGAGATA-AAAT
*
7629788 TTATT
65 TTGTT
* ** *
7629793 TCAAGAGAAACAGTCTCGAGTGAGACAAAAAAAATCAATGGAAAATATCTC-ATGGGAGTTGAAA
1 TCAAGAGAAACTGTCTCGAGTGAGACAAAAAATTTCAA-GGAAAATATCTCAAT-GGAGAT-AAA
*
7629857 TTTTCGTT
63 ATTT-GTT
**
7629865 TCAAGAGAAACTGTCGT-GAGTGAGACGAAAAGTTTTCAAGAGAAAATATCTCAA--G-GATAAA
1 TCAAGAGAAACTGTC-TCGAGTGAGAC-AAAAAATTTCAAG-GAAAATATCTCAATGGAGATAAA
7629926 ATCTTTGTT
63 A--TTTGTT
* * * * * * *
7629935 TCAAGAGAAATTGTCTCAAGTCAGATGAAAAATTTTCAAGGGAAAATATCTCAAGGGAGATGCAA
1 TCAAGAGAAACTGTCTCGAGTGAGA-CAAAAAATTTCAA-GGAAAATATCTCAATGGAGAT-AAA
*
7630000 TTTTGTT
63 ATTTGTT
* * * * * *
7630007 TCAAGAGAATCTGTGTTGAGTGAGATAAAAAAATTCAAGGAAAAATATTTCAA
1 TCAAGAGAAACTGTCTCGAGTGAGACAAAAAATTTCAAGG-AAAATATCTCAA
7630060 GTGAGACTCG
Statistics
Matches: 259, Mismatches: 55, Indels: 40
0.73 0.16 0.11
Matches are distributed among these distances:
65 4 0.02
66 3 0.01
67 8 0.03
68 11 0.04
69 19 0.07
70 89 0.34
71 46 0.18
72 53 0.20
73 23 0.09
74 3 0.01
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (69 bp):
TCAAGAGAAACTGTCTCGAGTGAGACAAAAAATTTCAAGGAAAATATCTCAATGGAGATAAAATT
TGTT
Found at i:7630177 original size:72 final size:74
Alignment explanation
Indices: 7630100--7630275 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 74
7630090 AAATATCTTT
* * *
7630100 AGTGAGATAAAATTTTGTTTTGA-ATGAAACTATTTGGAGTGAGA-AAAAA-AATTTTGAGGAAA
1 AGTGAGATAAAATTATGTTTTGAGA-GAAACTATCTCGAGTGAGACAAAAATAATTTTGAGGAAA
7630162 AATAATCTCC
65 AATAATCTCC
* * **
7630172 AGTGAGATAAAATTCTGTTTCGAGAGAAACTATCTCGAGTGAGACAAAAATTGTTTTTGAGGAAA
1 AGTGAGATAAAATTATGTTTTGAGAGAAACTATCTCGAGTGAGACAAAAA-TAATTTTGAGGAAA
**
7630237 AATTTTCTCC
65 AATAATCTCC
* * *
7630247 AATAAGATAAAATTATGTTTTAAGAGAAA
1 AGTGAGATAAAATTATGTTTTGAGAGAAA
7630276 AATGTCTCAT
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
72 38 0.44
73 6 0.07
75 43 0.49
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (74 bp):
AGTGAGATAAAATTATGTTTTGAGAGAAACTATCTCGAGTGAGACAAAAATAATTTTGAGGAAAA
ATAATCTCC
Found at i:7636229 original size:58 final size:60
Alignment explanation
Indices: 7636153--7636289 Score: 160
Period size: 58 Copynumber: 2.4 Consensus size: 60
7636143 TATAATATAA
* * *
7636153 TTAATAATATACTATAATATACG-TACTATATATACT-TTTTCA-AAAAACTATATATATT
1 TTAATAATATAATATAATATACGATAATATATATAATGTTTT-ATAAAAACTATATATATT
* *
7636211 TTAATATTATAATATAATAT-TGTATAATATATATAATGTTTTATAAAAACTATATATATT
1 TTAATAATATAATATAATATACG-ATAATATATATAATGTTTTATAAAAACTATATATATT
*
7636271 TT-ATAATAT-ATATTATATA
1 TTAATAATATAATATAATATA
7636290 TCTTTTAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
57 1 0.01
58 26 0.39
59 18 0.27
60 22 0.33
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (60 bp):
TTAATAATATAATATAATATACGATAATATATATAATGTTTTATAAAAACTATATATATT
Found at i:7636246 original size:19 final size:19
Alignment explanation
Indices: 7636201--7636333 Score: 92
Period size: 20 Copynumber: 6.5 Consensus size: 19
7636191 TTCAAAAAAC
*
7636201 TATAT-ATATTTTAATATTA
1 TATATAATATTTT-ATAATA
*
7636220 TAATATAATATTGTATAATA
1 T-ATATAATATTTTATAATA
*
7636240 TATATAATGTTTTATAA-A
1 TATATAATATTTTATAATA
*
7636258 AACTATATATATTTTATAATA
1 TA-TATA-ATATTTTATAATA
*
7636279 TATATTATATATCTTTTAAAAACTA
1 TATA-TA-ATA--TTTT-ATAA-TA
7636304 TATATATATATTTT-TAAATA
1 TATATA-ATATTTTAT-AATA
7636324 TATATAATAT
1 TATATAATAT
7636334 ATAATATACT
Statistics
Matches: 94, Mismatches: 9, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
18 2 0.02
19 23 0.24
20 30 0.32
21 16 0.17
22 4 0.04
23 4 0.04
24 9 0.10
25 6 0.06
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
TATATAATATTTTATAATA
Found at i:7636270 original size:39 final size:41
Alignment explanation
Indices: 7636222--7636310 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
7636212 TAATATTATA
*
7636222 ATATAATATTGTATAATATATA-TA-ATGT-TTTATAAAAACT
1 ATAT-ATATTGTATAATATATATTATATATCTTT-TAAAAACT
*
7636262 ATATATATTTTATAATATATATTATATATCTTTTAAAAACT
1 ATATATATTGTATAATATATATTATATATCTTTTAAAAACT
7636303 ATATATAT
1 ATATATAT
7636311 ATATTTTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
39 16 0.36
40 6 0.14
41 19 0.43
42 3 0.07
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (41 bp):
ATATATATTGTATAATATATATTATATATCTTTTAAAAACT
Found at i:7636287 original size:23 final size:23
Alignment explanation
Indices: 7636201--7636336 Score: 91
Period size: 23 Copynumber: 6.3 Consensus size: 23
7636191 TTCAAAAAAC
7636201 TATATATA-TTT-TAATAT-TAT
1 TATATATATTTTATAATATATAT
* *
7636221 AATATAATATTGTAT-A-ATATA-
1 TATAT-ATATTTTATAATATATAT
* *
7636242 TATA-ATGTTTTATAA-A-A-AC
1 TATATATATTTTATAATATATAT
7636261 TATATATATTTTATAATATATAT
1 TATATATATTTTATAATATATAT
* *
7636284 TATATATCTTTTA-AAAACTATA-
1 TATATATATTTTATAATA-TATAT
7636306 TATATATATTTT-TAAATATATAT
1 TATATATATTTTAT-AATATATAT
*
7636329 AATATATA
1 TATATATA
7636337 ATATACTCTA
Statistics
Matches: 90, Mismatches: 12, Indels: 25
0.71 0.09 0.20
Matches are distributed among these distances:
18 1 0.01
19 12 0.13
20 16 0.18
21 9 0.10
22 24 0.27
23 28 0.31
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.50
Consensus pattern (23 bp):
TATATATATTTTATAATATATAT
Found at i:7636307 original size:2 final size:2
Alignment explanation
Indices: 7636302--7636425 Score: 59
Period size: 2 Copynumber: 65.5 Consensus size: 2
7636292 TTTTAAAAAC
* * *
7636302 TA TA TA TA TA TA TT TT TA AA TA TA TA TA -A TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
7636342 CTC TA TA TA TA T- TA -A CA -A AA CCA TA TA TA TT TA TA TA TA TA
1 -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * * *
7636383 TA TA TA T- TA T- TT TA -A AA AA TA TA TA TT TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7636421 TA TA T
1 TA TA T
7636426 GTAATAATTA
Statistics
Matches: 97, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
1 9 0.09
2 86 0.89
3 2 0.02
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7636385 original size:36 final size:36
Alignment explanation
Indices: 7636302--7636425 Score: 103
Period size: 37 Copynumber: 3.4 Consensus size: 36
7636292 TTTTAAAAAC
* * * *
7636302 TATATATATATAT-TTTTA-AATATATATAATATATAA
1 TATATATATATATATTATACAAAAAATAT-ATAT-TTA
* *
7636338 TATACTCTATATATATTA-ACAAAACCATATATATTTA
1 TATA-TATATATATATTATACAAAA-AATATATATTTA
**
7636375 TATATATATATATATTATTTTAAAAAATATATATTTA
1 TATATATATATATATTA-TACAAAAAATATATATTTA
7636412 TATATA-ATATATAT
1 TATATATATATATAT
7636426 GTAATAATTA
Statistics
Matches: 73, Mismatches: 9, Indels: 12
0.78 0.10 0.13
Matches are distributed among these distances:
36 24 0.33
37 32 0.44
38 13 0.18
39 4 0.05
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (36 bp):
TATATATATATATATTATACAAAAAATATATATTTA
Found at i:7636407 original size:39 final size:39
Alignment explanation
Indices: 7636179--7636425 Score: 120
Period size: 40 Copynumber: 6.2 Consensus size: 39
7636169 ATATACGTAC
*
7636179 TATATATACTT-TTTCAAAAAACTATATATATTT-TA-ATA
1 TATATATA-TTATTTTAAAAAA-TATATATATTTATATATA
* * * * * *
7636217 TTATAATATAATATTGTATAATATATATA-ATGTTTTATAAA
1 -TAT-ATATATTATTTTAAAAAATATATATAT-TTATATATA
* * * * *
7636258 AACTATATA-TATTTTATAATATATATTATATATCTTTTAAAAA
1 TA-TATATATTATTTTA-AA-AAATA-TATATAT-TTATATATA
* * *
7636301 CTATATATATATATTTTTAAATATATATA-ATATATA-ATA
1 -TATATATAT-TATTTTAAAAAATATATATATTTATATATA
* * *
7636340 TACTCTATA-TATATTAACAAAACCATATATATTTATATATA
1 TA-TATATATTATTTTAA-AAAA-TATATATATTTATATATA
7636381 TATATATATTATTTT-AAAAA-ATATATATTTATATATA
1 TATATATATTATTTTAAAAAATATATATATTTATATATA
7636418 -ATATATAT
1 TATATATAT
7636426 GTAATAATTA
Statistics
Matches: 165, Mismatches: 24, Indels: 41
0.72 0.10 0.18
Matches are distributed among these distances:
36 8 0.05
37 23 0.14
38 7 0.04
39 34 0.21
40 35 0.21
41 20 0.12
42 8 0.05
43 21 0.13
44 3 0.02
45 6 0.04
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (39 bp):
TATATATATTATTTTAAAAAATATATATATTTATATATA
Found at i:7640279 original size:22 final size:21
Alignment explanation
Indices: 7640242--7640283 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7640232 CCATCTCCAT
7640242 TTCATCATCAACACCATCAAC
1 TTCATCATCAACACCATCAAC
7640263 TTCATCCATC-ACGACCATCAA
1 TTCAT-CATCAAC-ACCATCAA
7640284 TTCCGCAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.36, C:0.38, G:0.02, T:0.24
Consensus pattern (21 bp):
TTCATCATCAACACCATCAAC
Found at i:7654358 original size:23 final size:22
Alignment explanation
Indices: 7654304--7654358 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
7654294 TTTCTAACTT
*
7654304 TATATATAAAGATATTTATTTCA
1 TATATAT-AAGATAGTTATTTCA
* *
7654327 TATGTTATAATATAGTTATTTTCA
1 TAT-ATATAAGATAGTTA-TTTCA
7654351 TATATATA
1 TATATATA
7654359 TTTTATATCT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (22 bp):
TATATATAAGATAGTTATTTCA
Found at i:7655664 original size:22 final size:22
Alignment explanation
Indices: 7655632--7655674 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7655622 TCCATTTCGT
7655632 CATCAACACCATCAACTTCATC
1 CATCAACACCATCAACTTCATC
* * *
7655654 CATCAATACCATTAATTTCAT
1 CATCAACACCATCAACTTCAT
7655675 AGTCATCTCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.30
Consensus pattern (22 bp):
CATCAACACCATCAACTTCATC
Found at i:7656120 original size:13 final size:13
Alignment explanation
Indices: 7656095--7656132 Score: 67
Period size: 13 Copynumber: 2.8 Consensus size: 13
7656085 GACGAGTCCA
7656095 TTAAAAATAATTTT
1 TTAAAAAT-ATTTT
7656109 TTAAAAATATTTT
1 TTAAAAATATTTT
7656122 TTAAAAATATT
1 TTAAAAATATT
7656133 AATAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 16 0.67
14 8 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TTAAAAATATTTT
Found at i:7656452 original size:22 final size:22
Alignment explanation
Indices: 7656426--7656475 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
7656416 GTACCTTGGG
*
7656426 GTCGTTGGCCTTGATCATCATC
1 GTCGTCGGCCTTGATCATCATC
7656448 GTCGTCGGCCTTGATCATCATC
1 GTCGTCGGCCTTGATCATCATC
7656470 GTCGTC
1 GTCGTC
7656476 TTCAACTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.12, C:0.30, G:0.24, T:0.34
Consensus pattern (22 bp):
GTCGTCGGCCTTGATCATCATC
Found at i:7657448 original size:14 final size:12
Alignment explanation
Indices: 7657408--7657457 Score: 57
Period size: 12 Copynumber: 3.9 Consensus size: 12
7657398 CATATAAAAA
7657408 TTAAATAAATATA-
1 TTAAA-AAAT-TAG
7657421 TTAAAAAATTAG
1 TTAAAAAATTAG
7657433 TTAAAAAACTTAAG
1 TTAAAAAA-TT-AG
7657447 TTAAAAAATTA
1 TTAAAAAATTA
7657458 CCTTCCAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.06
12 13 0.38
13 9 0.26
14 10 0.29
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (12 bp):
TTAAAAAATTAG
Found at i:7658896 original size:3 final size:3
Alignment explanation
Indices: 7658888--7658938 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
7658878 TCATACCTCT
7658888 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7658936 TTA
1 TTA
7658939 CTATAAAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7659636 original size:3 final size:3
Alignment explanation
Indices: 7659623--7659681 Score: 100
Period size: 3 Copynumber: 19.0 Consensus size: 3
7659613 TTGATTCCTC
7659623 ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
7659670 ATT ATT ATT ATT
1 ATT ATT ATT ATT
7659682 TTTAATGAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
3 48 0.89
4 6 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:7660724 original size:156 final size:155
Alignment explanation
Indices: 7660430--7660813 Score: 520
Period size: 156 Copynumber: 2.5 Consensus size: 155
7660420 ATTTTTAGTA
* * *
7660430 AAAAAGTAGAAATTGAAGTTACATAAGTATTTTATTGTGGTATATAAGCATGTGGTTCAAATTTG
1 AAAAAG-AGGAATTGAAGTTACAT-AGTATTCTATTGTGGTATATGAGCATGTGGTTCAAATTTG
* * *
7660495 GTGAAAACAGACTTAGAATAAAGGATGAATGGAAGAAATAAGGAAATTATGAAAAAATGAGGGAC
64 GTAAAAACAGACTTAAAATAAAGGATGAATGGAAGAAATAAGGAAATTATGAAAAAATAAGGGAC
7660560 TAAATTGAAAAAT-AAAATATTATTATC
129 TAAATTGAAAAATAAAAAT-TTATTATC
*
7660587 AAAAAGAGGAATTGAAGTTACATAGGTATTCTATTGTGGTATATGAGCATGTGGTTCAAATTTGC
1 AAAAAGAGGAATTGAAGTTACATA-GTATTCTATTGTGGTATATGAGCATGTGGTTCAAATTTGG
* * **
7660652 TAAAAACGGACTTAAAATAAAGGATGAATTGAAGAAATAAGGAAATTATGAAAAGTTAAGGGACT
65 TAAAAACAGACTTAAAATAAAGGATGAATGGAAGAAATAAGGAAATTATGAAAAAATAAGGGACT
*
7660717 AAATTGAAAAATAAAAATTTGTTATC
130 AAATTGAAAAATAAAAATTTATTATC
* * * *** * *
7660743 AAAAGGAGGATTTGAAAG-TACATATTAATTCTACAATGGTTTATGAGCATGTGGTTAAAATTTG
1 AAAAAGAGGAATTG-AAGTTACATAGT-ATTCTATTGTGGTATATGAGCATGTGGTTCAAATTTG
7660807 GTAAAAA
64 GTAAAAA
7660814 AAACCTAAGA
Statistics
Matches: 202, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
155 2 0.01
156 186 0.92
157 14 0.07
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.29
Consensus pattern (155 bp):
AAAAAGAGGAATTGAAGTTACATAGTATTCTATTGTGGTATATGAGCATGTGGTTCAAATTTGGT
AAAAACAGACTTAAAATAAAGGATGAATGGAAGAAATAAGGAAATTATGAAAAAATAAGGGACTA
AATTGAAAAATAAAAATTTATTATC
Found at i:7665534 original size:267 final size:268
Alignment explanation
Indices: 7665058--7665636 Score: 801
Period size: 267 Copynumber: 2.2 Consensus size: 268
7665048 AGTGTCACTC
* * * * *
7665058 AGGGAATATCAGATCTGGGGATGTTGATCCATTTCGATGTCATTCAGGGAAGATTGAATCGGGGC
1 AGGGAATATCAAATCTGGGGAAGTTGATCCATTCCGCTGTCATTCAGGGAAGATTGAATCGGGGA
* *
7665123 AGACTTGTTCCGCTGTCACTCAGGGAATATCAAAACTTGAAAGAGAGAGATATGTTCCGCTTCTT
66 AGACTTGTTCCGCTGTCACTCAGGCAATATCAAAACTTGAAAGAGAGACATATGTTCCGCTTCTT
* *
7665188 CTGAAGGGAATATCAGATCTGGGGGAGTTGATCCATTTCACTGTCACTCAAGTAAGATTGAATCG
131 CTGAAGGGAATATCAGATCTGGAGGAGTTGATCCATTTCACTGTCACTCAAGGAAGATTGAATCG
* * *
7665253 GGGCAGACTTGTTCCGCTGTCACTCAGATAATATCAAATCTTGGAAAATATGG-ACTTGTTCCGC
196 GGGCAGACTTGTTCCGCTGTCACTCAGAGAATATCAAATCTTGGAAAAGA-GGCACATGTTCCGC
*
7665317 TTCTTTTGA
260 TTCTTCTGA
* *
7665326 AGGGAATATCATATCTGGGGAAGTTGATCCATTCCGCTGTC-TCTTAGGGAAGATTGAATCGGGG
1 AGGGAATATCAAATCTGGGGAAGTTGATCCATTCCGCTGTCAT-TCAGGGAAGATTGAATCGGGG
* * * *
7665390 AAGACTTGTT-CGTTGTCACTCAGGCAATATCAAATCTTGGAAAAGAGGGACATAT-TT-CTCTT
65 AAGACTTGTTCCGCTGTCACTCAGGCAATATCAAAACTT-G-AAAGAGAGACATATGTTCCGCTT
* ** * * *
7665452 CTTCTTATTGGAATATTAGATCTGGAGGAGTTGATCCA-TTCTGCTGTCACTCAGGGAAGATTGA
128 CTTCTGAAGGGAATATCAGATCTGGAGGAGTTGATCCATTTC-ACTGTCACTCAAGGAAGATTGA
* *
7665516 ATTGGGGCAGACTTGTTCCGCTGTCAGTCAGAGAATATCAAATCTTGGAAAAGAGGCACATGTTC
192 ATCGGGGCAGACTTGTTCCGCTGTCACTCAGAGAATATCAAATCTTGGAAAAGAGGCACATGTTC
*
7665581 CTCTTCTTCTGA
257 CGCTTCTTCTGA
* *
7665593 AGGGAATATCAAATCTGGGGTAGTTGATCCATTCTGCTGTCATT
1 AGGGAATATCAAATCTGGGGAAGTTGATCCATTCCGCTGTCATT
7665637 TAGAGAAAAC
Statistics
Matches: 275, Mismatches: 30, Indels: 13
0.86 0.09 0.04
Matches are distributed among these distances:
266 5 0.02
267 188 0.68
268 70 0.25
269 12 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (268 bp):
AGGGAATATCAAATCTGGGGAAGTTGATCCATTCCGCTGTCATTCAGGGAAGATTGAATCGGGGA
AGACTTGTTCCGCTGTCACTCAGGCAATATCAAAACTTGAAAGAGAGACATATGTTCCGCTTCTT
CTGAAGGGAATATCAGATCTGGAGGAGTTGATCCATTTCACTGTCACTCAAGGAAGATTGAATCG
GGGCAGACTTGTTCCGCTGTCACTCAGAGAATATCAAATCTTGGAAAAGAGGCACATGTTCCGCT
TCTTCTGA
Found at i:7665626 original size:134 final size:132
Alignment explanation
Indices: 7665058--7665634 Score: 741
Period size: 134 Copynumber: 4.3 Consensus size: 132
7665048 AGTGTCACTC
* *
7665058 AGGGAATATCAGATCTGGGGATGTTGATCCATT-TCGATGTCATTCAGGGAAGATTGAATCGGGG
1 AGGGAATATCAGATCTGGGGA-GTTGATCCATTCT-GCTGTCACTCAGGGAAGATTGAATCGGGG
* * *
7665122 CAGACTTGTTCCGCTGTCACTCAGGGAATATCAAAACTT-GAAAGAGAGAGATATGTTCCGCTTC
64 CAGACTTGTTCCGCTGTCACTCAGAGAATATCAAATCTTGGAAA-AGAG-GACATGTTCCGCTTC
7665186 TTCTGA
127 TTCTGA
* * *
7665192 AGGGAATATCAGATCTGGGGGAGTTGATCCATT-TCACTGTCACTCAAGTAAGATTGAATCGGGG
1 AGGGAATATCAGATCT-GGGGAGTTGATCCATTCT-GCTGTCACTCAGGGAAGATTGAATCGGGG
* * *
7665256 CAGACTTGTTCCGCTGTCACTCAGATAATATCAAATCTTGGAAAATATGGACTTGTTCCGCTTCT
64 CAGACTTGTTCCGCTGTCACTCAGAGAATATCAAATCTTGGAAAAGA-GGACATGTTCCGCTTCT
*
7665321 TTTGA
128 TCTGA
* * * * *
7665326 AGGGAATATCATATCTGGGGAAGTTGATCCATTCCGCTGTCTCTTAGGGAAGATTGAATCGGGGA
1 AGGGAATATCAGATCTGGGG-AGTTGATCCATTCTGCTGTCACTCAGGGAAGATTGAATCGGGGC
* * * *
7665391 AGACTTGTT-CGTTGTCACTCAG-GCAATATCAAATCTTGGAAAAGAGGGACATATTTCTCTTCT
65 AGACTTGTTCCGCTGTCACTCAGAG-AATATCAAATCTTGGAAAAGA-GGACATGTTCCGCTTCT
*
7665454 TCTTA
128 TCTGA
** * *
7665459 TTGGAATATTAGATCTGGAGGAGTTGATCCATTCTGCTGTCACTCAGGGAAGATTGAATTGGGGC
1 AGGGAATATCAGATCTGG-GGAGTTGATCCATTCTGCTGTCACTCAGGGAAGATTGAATCGGGGC
* *
7665524 AGACTTGTTCCGCTGTCAGTCAGAGAATATCAAATCTTGGAAAAGAGGCACATGTTCCTCTTCTT
65 AGACTTGTTCCGCTGTCACTCAGAGAATATCAAATCTTGGAAAAGAGG-ACATGTTCCGCTTCTT
7665589 CTGA
129 CTGA
*
7665593 AGGGAATATCAAATCTGGGGTAGTTGATCCATTCTGCTGTCA
1 AGGGAATATCAGATCTGGGG-AGTTGATCCATTCTGCTGTCA
7665635 TTTAGAGAAA
Statistics
Matches: 384, Mismatches: 48, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
133 118 0.31
134 255 0.66
135 11 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (132 bp):
AGGGAATATCAGATCTGGGGAGTTGATCCATTCTGCTGTCACTCAGGGAAGATTGAATCGGGGCA
GACTTGTTCCGCTGTCACTCAGAGAATATCAAATCTTGGAAAAGAGGACATGTTCCGCTTCTTCT
GA
Found at i:7666838 original size:20 final size:21
Alignment explanation
Indices: 7666809--7666856 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
7666799 TGAACCCTCC
7666809 TTTTTACTTATTAT-TTTTTC-A
1 TTTTT-CTTATT-TGTTTTTCAA
7666830 TTTTTCTTATTTGTTTTTCAA
1 TTTTTCTTATTTGTTTTTCAA
7666851 TTTTTC
1 TTTTTC
7666857 AATTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.04
20 12 0.48
21 12 0.48
ACGTcount: A:0.15, C:0.10, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTTCTTATTTGTTTTTCAA
Found at i:7666846 original size:21 final size:20
Alignment explanation
Indices: 7666809--7666856 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
7666799 TGAACCCTCC
7666809 TTTTTACTTATTATTTTTTC-A
1 TTTTT-CTTATTA-TTTTTCAA
*
7666830 TTTTTCTTATTTGTTTTTCAA
1 TTTTTCTTA-TTATTTTTCAA
7666851 TTTTTC
1 TTTTTC
7666857 AATTTTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.15, C:0.10, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTTCTTATTATTTTTCAA
Found at i:7666861 original size:20 final size:20
Alignment explanation
Indices: 7666823--7666874 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
7666813 TACTTATTAT
*
7666823 TTTTTCATTTTTCTTATTTG
1 TTTTTCATTTTTCTAATTTG
*
7666843 TTTTTCAATTTTTC-AATTTT
1 TTTTTC-ATTTTTCTAATTTG
7666863 TCTTTTC-TTTTT
1 T-TTTTCATTTTT
7666875 TAGTCCTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 5 0.18
20 11 0.39
21 12 0.43
ACGTcount: A:0.12, C:0.12, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTTCATTTTTCTAATTTG
Found at i:7667207 original size:25 final size:25
Alignment explanation
Indices: 7667173--7667222 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
7667163 TTTTCTTCTC
*
7667173 AATGAGATTCAGCCGGTCATACCTA
1 AATGAGATTCAACCGGTCATACCTA
*
7667198 AATGAGATTCAACTGGTCATACCTA
1 AATGAGATTCAACCGGTCATACCTA
7667223 GCTTGCACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (25 bp):
AATGAGATTCAACCGGTCATACCTA
Found at i:7670309 original size:24 final size:24
Alignment explanation
Indices: 7670280--7670355 Score: 65
Period size: 24 Copynumber: 3.3 Consensus size: 24
7670270 TTACCATTTA
7670280 TTTACCATAAGCTCATAAGCTTAT
1 TTTACCATAAGCTCATAAGCTTAT
* * *
7670304 TTTACCA-ATG-T-ACT-TGC-CA-
1 TTTACCATAAGCTCA-TAAGCTTAT
7670323 TTTATCCATAAGCTCATAAGCTTAT
1 TTTA-CCATAAGCTCATAAGCTTAT
7670348 TTTACCAT
1 TTTACCAT
7670356 TATACTTACC
Statistics
Matches: 38, Mismatches: 6, Indels: 16
0.63 0.10 0.27
Matches are distributed among these distances:
19 4 0.11
20 4 0.11
21 5 0.13
22 4 0.11
23 5 0.13
24 12 0.32
25 4 0.11
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.39
Consensus pattern (24 bp):
TTTACCATAAGCTCATAAGCTTAT
Found at i:7670336 original size:44 final size:44
Alignment explanation
Indices: 7670279--7670421 Score: 218
Period size: 44 Copynumber: 3.3 Consensus size: 44
7670269 TTTACCATTT
*
7670279 ATTTA-CCATAAGCTCATAAGCTTATTTTACCAATGTACTTGCC
1 ATTTATCCATAAGCTCATAAGCTTATTTTACCAATATACTTGCC
* *
7670322 ATTTATCCATAAGCTCATAAGCTTATTTTACCATTATACTTACC
1 ATTTATCCATAAGCTCATAAGCTTATTTTACCAATATACTTGCC
* *
7670366 ATTAATCCATAAGCTCATAAGCTTATTTTACCAATATATTTGCC
1 ATTTATCCATAAGCTCATAAGCTTATTTTACCAATATACTTGCC
7670410 A-TTATACCATAA
1 ATTTAT-CCATAA
7670422 CAATGTACCA
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
43 8 0.09
44 82 0.91
ACGTcount: A:0.34, C:0.22, G:0.06, T:0.38
Consensus pattern (44 bp):
ATTTATCCATAAGCTCATAAGCTTATTTTACCAATATACTTGCC
Found at i:7672371 original size:30 final size:30
Alignment explanation
Indices: 7672325--7672386 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
7672315 TTGTTCCTTG
*
7672325 AACTTTCCAAAGTTTATACTTTGATCACTA
1 AACTTTCCAAAGTTTATAATTTGATCACTA
* *
7672355 AACTTTACCAAA-TTTATAATTTGGTCATTA
1 AACTTT-CCAAAGTTTATAATTTGATCACTA
7672385 AA
1 AA
7672387 TAAATCCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 23 0.82
31 5 0.18
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.40
Consensus pattern (30 bp):
AACTTTCCAAAGTTTATAATTTGATCACTA
Found at i:7676291 original size:2 final size:2
Alignment explanation
Indices: 7676284--7676383 Score: 80
Period size: 2 Copynumber: 56.0 Consensus size: 2
7676274 GAAAATATTT
* *
7676284 TA TA TA TA TA -A T- TA -A TA TA -A AA TA TA TA -A AA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7676320 TA TA TA TA -A T- TA -A TA TA -A AA TA TA TA -A AA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7676356 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7676384 ATCGGGGCGG
Statistics
Matches: 82, Mismatches: 4, Indels: 24
0.75 0.04 0.22
Matches are distributed among these distances:
1 12 0.15
2 70 0.85
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:7676324 original size:34 final size:34
Alignment explanation
Indices: 7676283--7676384 Score: 159
Period size: 34 Copynumber: 2.9 Consensus size: 34
7676273 CGAAAATATT
7676283 TTATATATATAATTAATATAAAATATATAAAATA
1 TTATATATATAATTAATATAAAATATATAAAATA
7676317 TTATATATATAATTAATATAAAATATATAAAATA
1 TTATATATATAATTAATATAAAATATATAAAATA
*
7676351 TTATATATATATATATATATATATATATATATAA
1 TTATATATATA-AT-TA-ATATA-AAATATATAA
7676385 TCGGGGCGGG
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
34 45 0.71
35 2 0.03
36 2 0.03
37 5 0.08
38 9 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (34 bp):
TTATATATATAATTAATATAAAATATATAAAATA
Found at i:7676632 original size:34 final size:34
Alignment explanation
Indices: 7676567--7676633 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
7676557 AGTTCAACCA
* * * *
7676567 AATATCTTTTAATATTCAACTTTAAATAGATACT
1 AATATCTTTTAATATTAAAATATAAAAAGATACT
7676601 AATATCTTTTAAT-TTAAAATATACAAAAGATAC
1 AATATCTTTTAATATTAAAATATA-AAAAGATAC
7676634 ACTCCTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.40
Consensus pattern (34 bp):
AATATCTTTTAATATTAAAATATAAAAAGATACT
Found at i:7679215 original size:23 final size:23
Alignment explanation
Indices: 7679183--7679228 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
7679173 CCTAAGAGCT
*
7679183 TACCCAAGAAAGTTCTCGGGGCC
1 TACCCAAGAAAGATCTCGGGGCC
*
7679206 TACCCCAGAAAGATCTCGGGGCC
1 TACCCAAGAAAGATCTCGGGGCC
7679229 GTAGAGCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.26, C:0.33, G:0.26, T:0.15
Consensus pattern (23 bp):
TACCCAAGAAAGATCTCGGGGCC
Found at i:7681529 original size:17 final size:18
Alignment explanation
Indices: 7681507--7681541 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7681497 CGAAAAACAA
7681507 AAAATTT-GACTTTTCAG
1 AAAATTTAGACTTTTCAG
*
7681524 AAAATTTAGATTTTTCAG
1 AAAATTTAGACTTTTCAG
7681542 TCAAAGTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (18 bp):
AAAATTTAGACTTTTCAG
Found at i:7681582 original size:30 final size:30
Alignment explanation
Indices: 7681541--7681607 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
7681531 AGATTTTTCA
*
7681541 GTCAAAGTCAACGGTCAATGGGTTGACTCG
1 GTCAAAGTCAACGGTCAACGGGTTGACTCG
* *
7681571 GTCAAATTCAACGTTCAACGGGTTGACTCG
1 GTCAAAGTCAACGGTCAACGGGTTGACTCG
7681601 GTCAAAG
1 GTCAAAG
7681608 AAACGAGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (30 bp):
GTCAAAGTCAACGGTCAACGGGTTGACTCG
Found at i:7684486 original size:23 final size:23
Alignment explanation
Indices: 7684460--7684508 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
7684450 GAACTTCCAT
7684460 AATGCACATATAGTGTCACATAG
1 AATGCACATATAGTGTCACATAG
* *
7684483 AATGCACATGTAGTGTCACGTAG
1 AATGCACATATAGTGTCACATAG
7684506 AAT
1 AAT
7684509 ATACAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (23 bp):
AATGCACATATAGTGTCACATAG
Found at i:7687337 original size:3 final size:3
Alignment explanation
Indices: 7687329--7687358 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7687319 TTACTTATTT
7687329 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7687359 TTATTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:7687363 original size:3 final size:3
Alignment explanation
Indices: 7687357--7687390 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7687347 ATAATAATAA
7687357 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7687391 GCAAAAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7696832 original size:249 final size:248
Alignment explanation
Indices: 7696392--7697116 Score: 928
Period size: 249 Copynumber: 2.9 Consensus size: 248
7696382 CAAGTTATTT
* *
7696392 TGAAAATGAGAAAA-CGATTTTCAAAGTTTCTCATTTAATCTTTTCTA-AAAATGAAATTTTTGA
1 TGAAAATGA-AAAAGTGATTTTCAAAGTTTCTCATTTAA--TGTTCTAGAAAATGAAATTTTTGA
* * *
7696455 AAAGTAAGAAGTTTCTTACACAGTAAATTATTTCCCATAAATTTGTAAATCCATT-GGGTCATAT
63 AAAGTAAGAAGTTTATTAC-CAGTAAATTATTTCCCACAAATTTGTAAATCC-TTCGGGTCATCT
* *
7696519 GTCAGTCTTTCGAGCATGATGCTTAAAACCTTCGGGTCATCTGTCAGTCTTTCGAGCCAGATGAT
126 GTCAGTCTTTCGAGCATGATGCTTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCCAGATGAT
* *
7696584 AAGTCCTTAGGGCCATCCGTCAAACATTTGGGTA-GAATGTTTACATATGATTTTCGCA
191 AAGTCCTTAGGGCCATCCGTCAAACATTTAGGTATG-ATGTTTACATATGATTTTCCCA
* *
7696642 TGAAAATGAAAAAGTGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATTAAATGTTTGAAAA
1 TGAAAATGAAAAAGTGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATGAAATTTTTGAAAA
7696707 GTAAGAAGTTTATTACCTAGTAAATTATTTCCCACAAATTTGTTAAA-CCTTCGGGTCATCTGTC
66 GTAAGAAGTTTATTACC-AGTAAATTATTTCCCACAAATTTG-TAAATCCTTCGGGTCATCTGTC
* * **
7696771 AGTCTTTCGAGCATGATG-TTCAAATCCTTATGATCATCTGTCAGTCCTTT-GAGGAAGATGATA
129 AGTCTTTCGAGCATGATGCTT-AAATCCTTAGGGTCATCTGTCAGT-CTTTCGAGCCAGATGATA
* ** *
7696834 AGTCCTTAGGGCCATCTGTCTTACCTTTAGGTATGATGTTTACATATGATTTTCCCA
192 AGTCCTTAGGGCCATCCGTCAAACATTTAGGTATGATGTTTACATATGATTTTCCCA
*
7696891 TGAAAATGATAAAGTGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATGAAATTTTTGAAAA
1 TGAAAATGAAAAAGTGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATGAAATTTTTGAAAA
* *
7696956 GTAAGAAAGCAATTTCCAAAGTTTCTTACCAGTAAACTATAT-CC-CAAATTTGTAAATCCTTCG
66 GTAAG-AAG---TTT----A-----TTACCAGTAAATTATTTCCCACAAATTTGTAAATCCTTCG
* *
7697019 GGTCATCTGTCAGTCTTTCGAGCATGATGCTTAAATCCTTAGGGTCATCTTTCAGTCTTTCGAGT
118 GGTCATCTGTCAGTCTTTCGAGCATGATGCTTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGC
* * * *
7697084 CAGATGTTAAGTGCTTAGGGACATCCGTAAAAC
183 CAGATGATAAGTCCTTAGGGCCATCCGTCAAAC
7697117 CTCCAGGTAG
Statistics
Matches: 415, Mismatches: 36, Indels: 39
0.85 0.07 0.08
Matches are distributed among these distances:
248 11 0.03
249 237 0.57
250 44 0.11
253 3 0.01
257 1 0.00
258 8 0.02
259 92 0.22
260 4 0.01
261 10 0.02
262 5 0.01
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (248 bp):
TGAAAATGAAAAAGTGATTTTCAAAGTTTCTCATTTAATGTTCTAGAAAATGAAATTTTTGAAAA
GTAAGAAGTTTATTACCAGTAAATTATTTCCCACAAATTTGTAAATCCTTCGGGTCATCTGTCAG
TCTTTCGAGCATGATGCTTAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGCCAGATGATAAGTC
CTTAGGGCCATCCGTCAAACATTTAGGTATGATGTTTACATATGATTTTCCCA
Found at i:7697067 original size:42 final size:41
Alignment explanation
Indices: 7697008--7697108 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 41
7696998 CCCAAATTTG
*
7697008 TAAATCCTTCGGGTCATCTGTCAGTCTTTCGAG-CATGATGCT
1 TAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGTCA-GATG-T
*
7697050 TAAATCCTTAGGGTCATCTTTCAGTCTTTCGAGTCAGATGT
1 TAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGTCAGATGT
* * *
7697091 TAAGTGCTTAGGGACATC
1 TAAATCCTTAGGGTCATC
7697109 CGTAAAACCT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
41 16 0.30
42 35 0.66
43 2 0.04
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
TAAATCCTTAGGGTCATCTGTCAGTCTTTCGAGTCAGATGT
Found at i:7697264 original size:99 final size:99
Alignment explanation
Indices: 7697105--7697332 Score: 359
Period size: 99 Copynumber: 2.3 Consensus size: 99
7697095 TGCTTAGGGA
* * * *
7697105 CATCCGTAAAACCTCCA-GGTAGGATGTTTTCACATGAAATTGAGAAAGTGATTACTAAAGTTTC
1 CATCTGTAAAACCT-CAGGGTAGGATGTTTTCACATGAAAATGAGAAAGAGATTACCAAAGTTTC
7697169 TCATTTAATGTTCAAGAAAATTAAGTCCTCTGAGT
65 TCATTTAATGTTCAAGAAAATTAAGTCCTCTGAGT
* *
7697204 CATCTGTAAAGCCTCAGGGTAGGATGTTTTCGCATGAAAATGAGAAAGAGATTACCAAAGTTTCT
1 CATCTGTAAAACCTCAGGGTAGGATGTTTTCACATGAAAATGAGAAAGAGATTACCAAAGTTTCT
*
7697269 CATTTAATGTTCAAGAAAATTAAGTCCTCTGGGT
66 CATTTAATGTTCAAGAAAATTAAGTCCTCTGAGT
* *
7697303 CATCTGTAAAACCTCCGGGTATGATGTTTT
1 CATCTGTAAAACCTCAGGGTAGGATGTTTT
7697333 TACTTTTGAT
Statistics
Matches: 118, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
98 2 0.02
99 116 0.98
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (99 bp):
CATCTGTAAAACCTCAGGGTAGGATGTTTTCACATGAAAATGAGAAAGAGATTACCAAAGTTTCT
CATTTAATGTTCAAGAAAATTAAGTCCTCTGAGT
Found at i:7697480 original size:3 final size:3
Alignment explanation
Indices: 7697472--7697545 Score: 148
Period size: 3 Copynumber: 24.7 Consensus size: 3
7697462 TACTTATTTA
7697472 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7697520 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
7697546 CAAAAAAACA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7700907 original size:29 final size:30
Alignment explanation
Indices: 7700850--7700907 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
7700840 CAAAACACCT
* * *
7700850 AACTTTTAAAATTTTCATTTTTGGTCCCTA
1 AACTTTCAAAATTTACATTTTTAGTCCCTA
*
7700880 AACTTTCAAAATTTACCTTTTTAG-CCCT
1 AACTTTCAAAATTTACATTTTTAGTCCCT
7700908 TGAACTTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.47
Consensus pattern (30 bp):
AACTTTCAAAATTTACATTTTTAGTCCCTA
Found at i:7713610 original size:3 final size:3
Alignment explanation
Indices: 7713602--7713636 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7713592 ATATAAGTCC
* *
7713602 CCA CCA CCA CCA CCA CCA CCA CCG CCA TCA CCA CC
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CC
7713637 CAAACATCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.66, G:0.03, T:0.03
Consensus pattern (3 bp):
CCA
Found at i:7713678 original size:48 final size:48
Alignment explanation
Indices: 7713614--7713762 Score: 271
Period size: 48 Copynumber: 3.1 Consensus size: 48
7713604 ACCACCACCA
* *
7713614 CCACCACCACCGCCATCACCACCCAAACATCCTTATATGTACAAGTCT
1 CCACCACCACCGCCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
7713662 CCACCACCACCGCCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
1 CCACCACCACCGCCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
*
7713710 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
1 CCACCACCACCGCCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
7713758 CCACC
1 CCACC
7713763 CCCGCCACCT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 98 1.00
ACGTcount: A:0.32, C:0.45, G:0.07, T:0.17
Consensus pattern (48 bp):
CCACCACCACCGCCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
Found at i:7713795 original size:36 final size:32
Alignment explanation
Indices: 7713767--7713838 Score: 116
Period size: 30 Copynumber: 2.4 Consensus size: 32
7713757 TCCACCCCCG
7713767 CCACCTCCAGTGTACAAGTATAAATCTCCA--
1 CCACCTCCAGTGTACAAGTATAAATCTCCACC
7713797 CCACCTCCAGTGTACAAGTATAAATCTCCA--
1 CCACCTCCAGTGTACAAGTATAAATCTCCACC
7713827 CCACCTCCAGTG
1 CCACCTCCAGTG
7713839 CACTATCCTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.31, C:0.36, G:0.11, T:0.22
Consensus pattern (32 bp):
CCACCTCCAGTGTACAAGTATAAATCTCCACC
Found at i:7713798 original size:84 final size:83
Alignment explanation
Indices: 7713698--7714143 Score: 277
Period size: 84 Copynumber: 5.2 Consensus size: 83
7713688 GCATCCTTAT
7713698 AAGTACAAGTCTCCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCCACC
1 AAGTACAAGTCTCCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCCACC
*
7713763 CCCGCCACCTCCAGTGTAC
66 CCCGCCACCTCCAAT-TAC
* * * *** *** * * * ** * *
7713782 AAGTATAAATCTCCACCACCTCCAGTGT-A-CAAGTATA-AAT-CTCCACCACCT-CCAG--TGC
1 AAGTACAAGTCTCCACCACCACCACCATCACCACCCA-AGCATCCT-TA-TAAGTACAAGTCTCC
** * *
7713840 ACTATCCTCCACC-CC-CTTAC
63 AC-CCCCGCCACCTCCAATTAC
* *
7713860 AAATACAAGTCCCCACCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCC
1 AAGTACAAGT---CTCCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCC
* * *
7713925 ACCACCGCCATCACCACCCAAACATCCTTAT
63 ACCCCCG-C--CACC-TCC--A-A---TTAC
* *
7713956 AAGTACAAGTCTCCACCACCGCCGCCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCCACC
1 AAGTACAAGTCTCCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCCACC
* *
7714021 ACCAC-CCAAGCATCC--TTAT
66 -CC-CGCC-A-CCTCCAATTAC
* * * *
7714040 AAGTACAGGTCTCCACCACCACCACCATCACCACCTAAACATCCTTACAAGTACAAGTCTCCACC
1 AAGTACAAGTCTCCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCCACC
*
7714105 TCCGCCACCTCCAATTTAC
66 CCCGCCACCTCCAA-TTAC
*
7714124 AAGTATAAGTCTCCACCACC
1 AAGTACAAGTCTCCACCACC
7714144 TCCATTGCAC
Statistics
Matches: 267, Mismatches: 61, Indels: 68
0.67 0.15 0.17
Matches are distributed among these distances:
78 10 0.04
79 1 0.00
80 6 0.02
81 26 0.10
82 15 0.06
83 16 0.06
84 110 0.41
85 5 0.02
87 4 0.01
89 2 0.01
91 1 0.00
92 3 0.01
93 54 0.20
94 1 0.00
95 1 0.00
96 12 0.04
ACGTcount: A:0.31, C:0.42, G:0.08, T:0.18
Consensus pattern (83 bp):
AAGTACAAGTCTCCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCTCCACC
CCCGCCACCTCCAATTAC
Found at i:7713999 original size:48 final size:48
Alignment explanation
Indices: 7713875--7714404 Score: 454
Period size: 48 Copynumber: 11.3 Consensus size: 48
7713865 CAAGTCCCCA
7713875 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
1 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* *
7713923 ---CCACCACCGCCATCACCACCCAAACATCCTTATAAGTACAAGTCT
1 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* *
7713968 CCACCACCGCCGCCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
1 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
*
7714016 ---------CCA-C--CACCACCCAAGCATCCTTATAAGTACAGGTCT
1 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* * *
7714052 CCACCACCACCACCATCACCACCTAAACATCCTTACAAGTACAAGTCT
1 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* * * *
7714100 CCACCTCCGCCACC-T------CC-A--AT--TTACAAGTATAAGTCT
1 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* * * * * * *
7714136 CCACCACCTCCA--TTGCACTATCCTCCACCA-CCTTACAAGTACAAGTCC
1 CCACCACCACCACCAT-CACCA-CC-CAAGCATCCTTATAAGTACAAGTCT
*
7714184 CCACCACCACCATCACCATCACCACCCAAGCATCCTTATGAGTACAAGTCT
1 CCACCACCA-C--CACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* *
7714235 CCACCACCACCGCCATCACCACCTAAGCATCCTTATAAGTACAAGTCT
1 CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
7714283 CCACCACCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
1 ------CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* *
7714337 CCACCACCACCACCACCACCATCACCACCTAAACATCCTTATAAGTACAAGTCT
1 ------CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
* *
7714391 CCACCCCCGCCACC
1 CCACCACCACCACC
7714405 TCCAGTTTAC
Statistics
Matches: 405, Mismatches: 35, Indels: 84
0.77 0.07 0.16
Matches are distributed among these distances:
35 1 0.00
36 56 0.14
38 3 0.01
39 2 0.00
40 1 0.00
41 1 0.00
43 1 0.00
44 1 0.00
45 47 0.12
46 1 0.00
47 2 0.00
48 152 0.38
49 1 0.00
50 5 0.01
51 28 0.07
52 4 0.01
53 1 0.00
54 98 0.24
ACGTcount: A:0.31, C:0.44, G:0.07, T:0.18
Consensus pattern (48 bp):
CCACCACCACCACCATCACCACCCAAGCATCCTTATAAGTACAAGTCT
Found at i:7714028 original size:36 final size:36
Alignment explanation
Indices: 7713984--7714062 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
7713974 CCGCCGCCAT
7713984 CACCACCCAAGCATCCTTATAAGTACAAGTCTCCAC
1 CACCACCCAAGCATCCTTATAAGTACAAGTCTCCAC
*
7714020 CACCACCCAAGCATCCTTATAAGTACAGGTCTCCAC
1 CACCACCCAAGCATCCTTATAAGTACAAGTCTCCAC
7714056 CACCACC
1 CACCACC
7714063 ACCATCACCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.32, C:0.42, G:0.09, T:0.18
Consensus pattern (36 bp):
CACCACCCAAGCATCCTTATAAGTACAAGTCTCCAC
Found at i:7714293 original size:54 final size:54
Alignment explanation
Indices: 7714166--7714404 Score: 334
Period size: 54 Copynumber: 4.6 Consensus size: 54
7714156 TCCTCCACCA
* *
7714166 CCTTACAAGTACAAG--TCC-CCACCACCACCATCACCATCACCACCCAAGCAT
1 CCTTATAAGTACAAGTCTCCACCACCACCACCACCACCATCACCACCCAAGCAT
* * *
7714217 CCTTATGAGTACAAGTCT------CCACCACCACCGCCATCACCACCTAAGCAT
1 CCTTATAAGTACAAGTCTCCACCACCACCACCACCACCATCACCACCCAAGCAT
7714265 CCTTATAAGTACAAGTCTCCACCACCACCACCACCACCATCACCACCCAAGCAT
1 CCTTATAAGTACAAGTCTCCACCACCACCACCACCACCATCACCACCCAAGCAT
* *
7714319 CCTTATAAGTACAAGTCTCCACCACCACCACCACCACCATCACCACCTAAACAT
1 CCTTATAAGTACAAGTCTCCACCACCACCACCACCACCATCACCACCCAAGCAT
* *
7714373 CCTTATAAGTACAAGTCTCCACCCCCGCCACC
1 CCTTATAAGTACAAGTCTCCACCACCACCACC
7714405 TCCAGTTTAC
Statistics
Matches: 168, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
48 44 0.26
51 13 0.08
53 1 0.01
54 110 0.65
ACGTcount: A:0.32, C:0.45, G:0.07, T:0.16
Consensus pattern (54 bp):
CCTTATAAGTACAAGTCTCCACCACCACCACCACCACCATCACCACCCAAGCAT
Found at i:7714492 original size:12 final size:12
Alignment explanation
Indices: 7714475--7714512 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7714465 GTACAAGTCC
7714475 CCACCA-CCTCCA
1 CCACCATCCT-CA
7714487 CCACCATCCTCA
1 CCACCATCCTCA
*
7714499 CCACCATCCCCA
1 CCACCATCCTCA
7714511 CC
1 CC
7714513 CAAGCATCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 21 0.88
13 3 0.12
ACGTcount: A:0.24, C:0.66, G:0.00, T:0.11
Consensus pattern (12 bp):
CCACCATCCTCA
Found at i:7717854 original size:59 final size:59
Alignment explanation
Indices: 7717757--7718060 Score: 455
Period size: 59 Copynumber: 5.2 Consensus size: 59
7717747 GAAATGTTTT
* * * * *
7717757 TTCATCTAACATGCATTAGTGGCACCTTTATGCCAAATGCATAGTTAGGCATTTAACCA
1 TTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACCA
* * * * *
7717816 TTCATCTAACTTTCATTATTGGTACCTTTCTGCAAAATGCATAGTTAGGCATTTAACCA
1 TTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACCA
* * *
7717875 TTCATCTAACTTGCATTATTGGCACTTTTATGCCAAATGCACAGTTAGGCATTTAATCA
1 TTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACCA
7717934 TTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACCA
1 TTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACCA
** * *
7717993 TTCATCTAACTTGCATTATTGGCACATTTCTGGTAAATGCACAGTTAGGCAATTAACCT
1 TTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACCA
7718052 TTCATCTAA
1 TTCATCTAA
7718061 AGGCATTTAA
Statistics
Matches: 225, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 225 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (59 bp):
TTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACCA
Found at i:7718070 original size:22 final size:22
Alignment explanation
Indices: 7718039--7718082 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7718029 ATGCACAGTT
7718039 AGGCAATTAACCTTTCATCTAA
1 AGGCAATTAACCTTTCATCTAA
*
7718061 AGGCATTTAACCTTTCATCTAA
1 AGGCAATTAACCTTTCATCTAA
7718083 CTTACATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (22 bp):
AGGCAATTAACCTTTCATCTAA
Found at i:7718115 original size:81 final size:81
Alignment explanation
Indices: 7717980--7718141 Score: 261
Period size: 81 Copynumber: 2.0 Consensus size: 81
7717970 ATGCACAGTT
* **
7717980 AGGCATTTAACCATTCATCTAACTTGCATTATTGGCACATTTCTGGTAAATGCACAGTTAGGCAA
1 AGGCATTTAACCATTCATCTAACTTACATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAA
*
7718045 TTAACCTTTCATCTAA
66 TTAACCATTCATCTAA
* * *
7718061 AGGCATTTAACCTTTCATCTAACTTACATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCAT
1 AGGCATTTAACCATTCATCTAACTTACATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAA
7718126 TTAACCATTCATCTAA
66 TTAACCATTCATCTAA
7718142 CTTGTATTAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (81 bp):
AGGCATTTAACCATTCATCTAACTTACATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAA
TTAACCATTCATCTAA
Found at i:7718153 original size:59 final size:59
Alignment explanation
Indices: 7718061--7718255 Score: 291
Period size: 59 Copynumber: 3.3 Consensus size: 59
7718051 TTTCATCTAA
* * *
7718061 AGGCATTTAACCTTTCATCTAACTTACATTATTGGCACCTTTCTGCCAAATGCACAGTT
1 AGGCATTTAACCATTCATCTAACTTGCATTATTGGCACCTTTCTACCAAATGCACAGTT
* *
7718120 AGGCATTTAACCATTCATCTAACTTGTATTATTGGCACCTCTCTACCAAATGCACAGTT
1 AGGCATTTAACCATTCATCTAACTTGCATTATTGGCACCTTTCTACCAAATGCACAGTT
* * * *
7718179 AGGAAATTAACCATTCATCTAACTTGCATTATTGGCCCCTTTCTTCCAAATGCACAGTT
1 AGGCATTTAACCATTCATCTAACTTGCATTATTGGCACCTTTCTACCAAATGCACAGTT
* *
7718238 AGGTATTTAACCTTTCAT
1 AGGCATTTAACCATTCAT
7718256 TTTAGAGAAA
Statistics
Matches: 122, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 122 1.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (59 bp):
AGGCATTTAACCATTCATCTAACTTGCATTATTGGCACCTTTCTACCAAATGCACAGTT
Found at i:7718173 original size:140 final size:140
Alignment explanation
Indices: 7717921--7718200 Score: 452
Period size: 140 Copynumber: 2.0 Consensus size: 140
7717911 ATGCACAGTT
* *
7717921 AGGCATTTAATCATTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAT
1 AGGCATTTAACCATTCATCTAACTTACATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAT
* *** *
7717986 TTAACCATTCATCTAACTTGCATTATTGGCACATTTCTGGTAAATGCACAGTTAGGCAATTAACC
66 TTAACCATTCATCTAACTTGCATTATTGGCACATCTCTACCAAATGCACAGTTAGGAAATTAACC
*
7718051 TTTCATCTAA
131 ATTCATCTAA
* *
7718061 AGGCATTTAACCTTTCATCTAACTTACATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCAT
1 AGGCATTTAACCATTCATCTAACTTACATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAT
* *
7718126 TTAACCATTCATCTAACTTGTATTATTGGCACCTCTCTACCAAATGCACAGTTAGGAAATTAACC
66 TTAACCATTCATCTAACTTGCATTATTGGCACATCTCTACCAAATGCACAGTTAGGAAATTAACC
7718191 ATTCATCTAA
131 ATTCATCTAA
7718201 CTTGCATTAT
Statistics
Matches: 128, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.34
Consensus pattern (140 bp):
AGGCATTTAACCATTCATCTAACTTACATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAT
TTAACCATTCATCTAACTTGCATTATTGGCACATCTCTACCAAATGCACAGTTAGGAAATTAACC
ATTCATCTAA
Found at i:7718202 original size:199 final size:199
Alignment explanation
Indices: 7717862--7718255 Score: 626
Period size: 199 Copynumber: 2.0 Consensus size: 199
7717852 ATGCATAGTT
* *
7717862 AGGCATTTAACCATTCATCTAACTTGCATTATTGGCACTTTTATGCCAAATGCACAGTTAGGCAT
1 AGGCATTTAACCATTCATCTAACTTACATTATTGGCACCTTTATGCCAAATGCACAGTTAGGCAT
* * * * *
7717927 TTAATCATTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCATTTAACC
66 TTAACCATTCATCTAACTTGCATTATTGGCACATCTCTACCAAATGCACAGTTAGGAAATTAACC
**
7717992 ATTCATCTAACTTGCATTATTGGCACATTTCTGGTAAATGCACAGTTAGGCAATTAACCTTTCAT
131 ATTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAATTAACCTTTCAT
7718057 CTAA
196 CTAA
* *
7718061 AGGCATTTAACCTTTCATCTAACTTACATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCAT
1 AGGCATTTAACCATTCATCTAACTTACATTATTGGCACCTTTATGCCAAATGCACAGTTAGGCAT
* *
7718126 TTAACCATTCATCTAACTTGTATTATTGGCACCTCTCTACCAAATGCACAGTTAGGAAATTAACC
66 TTAACCATTCATCTAACTTGCATTATTGGCACATCTCTACCAAATGCACAGTTAGGAAATTAACC
* * * * *
7718191 ATTCATCTAACTTGCATTATTGGCCCCTTTCTTCCAAATGCACAGTTAGGTATTTAACCTTTCAT
131 ATTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAATTAACCTTTCAT
7718256 TTTAGAGAAA
Statistics
Matches: 177, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
199 177 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (199 bp):
AGGCATTTAACCATTCATCTAACTTACATTATTGGCACCTTTATGCCAAATGCACAGTTAGGCAT
TTAACCATTCATCTAACTTGCATTATTGGCACATCTCTACCAAATGCACAGTTAGGAAATTAACC
ATTCATCTAACTTGCATTATTGGCACATTTCTGCCAAATGCACAGTTAGGCAATTAACCTTTCAT
CTAA
Found at i:7724796 original size:59 final size:59
Alignment explanation
Indices: 7724698--7725117 Score: 651
Period size: 59 Copynumber: 7.1 Consensus size: 59
7724688 CAATGTTTTT
* * *
7724698 ATTCTTCTAACTTGCATTAGTGGCACCTTTCTGCCAAATGCACAGTTAGACATTTAACC
1 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
* *
7724757 ATTCATCTAACTTGCATTATTGACACCTTTCTGCGAAATGCACAGTTAGGCATTTAACC
1 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
* * * *
7724816 ATTCATCTAACTTGCATTATTGGGACATTTATGCCAAATGTACAGTTAGGCATTTAACC
1 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
* *
7724875 ATTCATCTAACTTGCATTATTGGCACCTTTTTGCCAAATGCACAGTTAGGCATTTAAAC
1 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
* *
7724934 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGAAATTAACC
1 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
* * * *
7724993 TTTCATCTAACTTGCGTTATTGACACCTTTATGCCAAATGCACAGTTAGGCATTTAACC
1 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
* * *
7725052 ATTCATCTAACTTGCATTATTGGCATCTTTCTGCCAAATGCACAGATAGGCAATTAACC
1 ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
*
7725111 TTTCATC
1 ATTCATC
7725118 AAAAGGCATT
Statistics
Matches: 327, Mismatches: 34, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 327 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (59 bp):
ATTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAATGCACAGTTAGGCATTTAACC
Found at i:7725183 original size:81 final size:81
Alignment explanation
Indices: 7725040--7725197 Score: 257
Period size: 81 Copynumber: 2.0 Consensus size: 81
7725030 ATGCACAGTT
7725040 AGGCATTTAACCATTCATCTAACTTGCATTATTGGCATCTTTCTGCCAAATGCACAGATAGGCAA
1 AGGCATTTAACCATTCATCTAACTTGCATTATTGGCATCTTTCTGCCAAATGCACAGATAGGCAA
7725105 TTAACCTTTCATCAAA
66 TTAACCTTTCATCAAA
* *
7725121 AGGCATTTAA-CATTTCATCTAACTTGCATTATTGGCA-CATTTCTGCCAAATGCATAGTTAGGC
1 AGGCATTTAACCA-TTCATCTAACTTGCATTATTGGCATC-TTTCTGCCAAATGCACAGATAGGC
*
7725184 ATTTAACCTTTCAT
64 AATTAACCTTTCAT
7725198 TTTAGAGAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
80 3 0.04
81 69 0.96
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (81 bp):
AGGCATTTAACCATTCATCTAACTTGCATTATTGGCATCTTTCTGCCAAATGCACAGATAGGCAA
TTAACCTTTCATCAAA
Found at i:7726732 original size:22 final size:20
Alignment explanation
Indices: 7726683--7726722 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7726673 AAACGTTCGA
7726683 TATCGATACTCATATGGGAG
1 TATCGATACTCATATGGGAG
*
7726703 TATCGATACTCCTATGGGAG
1 TATCGATACTCATATGGGAG
7726723 GGTATTGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (20 bp):
TATCGATACTCATATGGGAG
Found at i:7732131 original size:138 final size:134
Alignment explanation
Indices: 7731970--7732365 Score: 440
Period size: 134 Copynumber: 3.0 Consensus size: 134
7731960 CACTGATTTA
*
7731970 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATTAATTAATTAATTAATTAATTATTTCT
1 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATT-A-T--TTAATTAATTATTTCT
7732035 AATATTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACT
62 AATATTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACT
7732100 CTGCTAAC
127 CTGCTAAC
* * *
7732108 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATTATTTATTTATTTATTTTTAATA
1 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATTATTTAATTAATTATTTCTAATA
* * * * *
7732173 TTTGATTCGACCTTGTGGTGACCCGATCCTGGGTATGATCCGCATTATTATGGTTCGGACTCTGC
66 TTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACTCTGC
7732238 TAAC
131 TAAC
* ** * ** * *
7732242 CACTAAC-TTT-TTT-ATTTTA-TTT---TATT-TTAT---TCTATTTTCTTAATTGTTT-GAAT
1 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAAT-TATTTAATTAATTATTTCTAA-
* * * * *
7732295 TATTCGATTCGACCTTGTGGTGA-CCGAATCCGGGGTATGATCCACATTATAATGGTTCGGACTC
64 TATTCGATTCAACCTTGTGGTGACCCG-ATACGGGGTATGATCCGCATTATTATGGTTCAGACTC
7732359 TGCTAAC
128 TGCTAAC
7732366 CGTTAACATT
Statistics
Matches: 233, Mismatches: 22, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
123 6 0.03
124 76 0.33
126 4 0.02
127 3 0.01
130 3 0.01
131 4 0.02
132 3 0.01
133 3 0.01
134 87 0.37
136 1 0.00
137 1 0.00
138 42 0.18
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (134 bp):
TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATTATTTAATTAATTATTTCTAATA
TTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACTCTGC
TAAC
Found at i:7732214 original size:134 final size:137
Alignment explanation
Indices: 7731970--7732252 Score: 446
Period size: 134 Copynumber: 2.1 Consensus size: 137
7731960 CACTGATTTA
*
7731970 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATTAATTAATTAATTAATTAATTATTTCT
1 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATTAATT-ATTAATTAATTATTTCT
7732035 AATATTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACT
65 AATATTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACT
7732100 CTGCTAAC
130 CTGCTAAC
* * *
7732108 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATT-A-T-TTATTTATTTATTTTTA
1 TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATTAATTATTAATTAATTATTTCTA
* * * * *
7732170 ATATTTGATTCGACCTTGTGGTGACCCGATCCTGGGTATGATCCGCATTATTATGGTTCGGACTC
66 ATATTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACTC
7732235 TGCTAAC
131 TGCTAAC
*
7732242 CACTAACTTTT
1 TACTAACTTTT
7732253 TTATTTTATT
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
134 91 0.67
136 1 0.01
137 1 0.01
138 42 0.31
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (137 bp):
TACTAACTTTTATTTCATTGCACTTTAACCATTGTTATCAATTAATTATTAATTAATTATTTCTA
ATATTCGATTCAACCTTGTGGTGACCCGATACGGGGTATGATCCGCATTATTATGGTTCAGACTC
TGCTAAC
Found at i:7732463 original size:28 final size:29
Alignment explanation
Indices: 7732404--7732460 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
7732394 ACATTTTATT
*
7732404 TTTATTGCATTTTATTTATGCTATTTAAA
1 TTTATTGCATTTTATTTATCCTATTTAAA
7732433 TTTA-TGCATTTTTATTT-TCCTTATTTAA
1 TTTATTGCA-TTTTATTTATCC-TATTTAA
7732461 TTTCAGTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.25, C:0.09, G:0.05, T:0.61
Consensus pattern (29 bp):
TTTATTGCATTTTATTTATCCTATTTAAA
Found at i:7743498 original size:20 final size:19
Alignment explanation
Indices: 7743474--7743524 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
7743464 TTAACTTTTT
7743474 CTTTTATCTTTTATTATTAA
1 CTTTTATCTTTTATT-TTAA
* * *
7743494 TTTTTCTCTTTCATTTTAA
1 CTTTTATCTTTTATTTTAA
*
7743513 CTTTTACCTTTT
1 CTTTTATCTTTT
7743525 CTCTTTCTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.67
Consensus pattern (19 bp):
CTTTTATCTTTTATTTTAA
Found at i:7743512 original size:19 final size:21
Alignment explanation
Indices: 7743475--7743517 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
7743465 TAACTTTTTC
*
7743475 TTTTATCTTTTATTATTAA-T
1 TTTTATCTTTCATTATTAACT
*
7743495 TTTTCTCTTTCATT-TTAACT
1 TTTTATCTTTCATTATTAACT
7743515 TTT
1 TTT
7743518 ACCTTTTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTATCTTTCATTATTAACT
Found at i:7750227 original size:274 final size:274
Alignment explanation
Indices: 7749738--7750261 Score: 845
Period size: 274 Copynumber: 1.9 Consensus size: 274
7749728 TTTTTAGAAA
* *
7749738 CTAAGCCTGATTTTCAGGGGTTCCATGACAACTAAGAAACTAATCTTGATTTTCAAGGGTTTCTT
1 CTAAGCCTAATTTTCAGGGGTTCCATGACAACTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTT
* *
7749803 GATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCGCGATGCTTAAATTCTTCAGGTCAT
66 GATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCAGGTCAT
* *
7749868 CTATAAGTCTTTCAAGCAAGATGATAAGTCCTTTGGCCATCCATAAGACCTTCGGGAAGGATGTT
131 CTACAAGTCTTTCAAGCAAGATGATAAGTCCTTTGGCCATCCATAAGACCTTCGGGAAAGATGTT
* *
7749933 TTCAAATGAGTTTTTAGAAACTAAGTCTGATTTTTAGGGGTTTCTTGACGATTATCTCCAATGAG
196 TTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTTGACGATTATCTCCAATGAG
7749998 TTTTTAAAATAAAG
261 TTTTTAAAATAAAG
** * *
7750012 CTAAGCCTAATTTTTTGGGGTTCCTTGACAACTAAGAAACTAAGCTTGA-TTTCAAGGTTTTCTT
1 CTAAGCCTAATTTTCAGGGGTTCCATGACAACTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTT
* *
7750076 GATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCAT
66 GATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCAGGTCAT
* * * *
7750141 CTACATGTCTTTCGAGCAAGATGATAAGTCCTTTGGGTCATCCATACGACCTTC-GGACAAGATG
131 CTACAAGTCTTTCAAGCAAGATGATAAGTCCTTT-GGCCATCCATAAGACCTTCGGGA-AAGATG
*
7750205 TTTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTAT
194 TTTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTTGACGATTAT
7750262 TTTTAAAGGA
Statistics
Matches: 229, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
273 109 0.48
274 120 0.52
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (274 bp):
CTAAGCCTAATTTTCAGGGGTTCCATGACAACTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTT
GATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCAGGTCAT
CTACAAGTCTTTCAAGCAAGATGATAAGTCCTTTGGCCATCCATAAGACCTTCGGGAAAGATGTT
TTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTTGACGATTATCTCCAATGAG
TTTTTAAAATAAAG
Found at i:7750346 original size:273 final size:267
Alignment explanation
Indices: 7749733--7750301 Score: 776
Period size: 273 Copynumber: 2.1 Consensus size: 267
7749723 ATGTGTTTTT
* * * * ** *
7749733 AGAAA-CTAAGCCTGATTTTCAGGGGTTCCATGACAACTAAGAAACTAATCTTGATTTTCAAGGG
1 AGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGACAACTAAGAAAATAAGATTGA-TTTCAAGGT
* *
7749797 TTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCGCGATGCTTAAATTCTTCA
65 TTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCA
* *
7749862 GGTCATCTATAAGTCTTTCAAGCAAGATGATAAGTCCTTTGGCCATCCATAAGACCTTCGGGAAG
130 GGTCATCTACAAGTCTTTCAAGCAAGATGATAAGTCCTTTGGCCATCCATAAGACCTTCGGGAAA
* * *
7749927 GATGTTTTCAAATGAGTTTTTAGAAACTAAGTCTGATTTTTAGGGGTTTCTTGACGATTATCTCC
195 GATGTTTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTT-A-GATGA-CT--
7749992 AATGAGTTTTTAAA
255 -ATGAGTTTTTAAA
* * * *
7750006 ATAAAGCTAAGCCTAATTTTTTGGGGTTCCTTGACAACTAAGAAACTAAGCTTGATTTCAAGGTT
1 AGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGACAACTAAGAAAATAAGATTGATTTCAAGGTT
* *
7750071 TTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGG
66 TTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCAG
* * * *
7750136 GTCATCTACATGTCTTTCGAGCAAGATGATAAGTCCTTTGGGTCATCCATACGACCTTC-GGACA
131 GTCATCTACAAGTCTTTCAAGCAAGATGATAAGTCCTTT-GGCCATCCATAAGACCTTCGGGA-A
7750200 AGATGTTTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTT-GATGA-T-T-A
194 AGATGTTTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTTAGATGACTATGA
7750261 -TTTTT-AA
259 GTTTTTAAA
*
7750268 AGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGA
1 AGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGA
7750302 TGATAATTGA
Statistics
Matches: 270, Mismatches: 23, Indels: 17
0.87 0.07 0.05
Matches are distributed among these distances:
262 33 0.12
263 5 0.02
264 1 0.00
265 1 0.00
269 1 0.00
271 4 0.01
273 113 0.42
274 112 0.41
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (267 bp):
AGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGACAACTAAGAAAATAAGATTGATTTCAAGGTT
TTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCAG
GTCATCTACAAGTCTTTCAAGCAAGATGATAAGTCCTTTGGCCATCCATAAGACCTTCGGGAAAG
ATGTTTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAGGGGTTTCTTAGATGACTATGAGT
TTTTAAA
Found at i:7751317 original size:91 final size:91
Alignment explanation
Indices: 7751162--7751348 Score: 293
Period size: 91 Copynumber: 2.1 Consensus size: 91
7751152 GATAAACCGA
7751162 TCAACATTTCCAATGGAAAGTTCATAATGAGAAAAACCCATCCAACGAGAGAGAAGAAGTTCATA
1 TCAACATTTCCAATGGAAAGTTCATAATGAGAAAAACCCATCCAACGAGAGAGAAGAAGTTCATA
* *
7751227 ATGAGAATAACTTGTTCAACCTTGGC
66 ATGAGAAGAACTTGTTCAACATTGGC
* * * * * * *
7751253 TCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCGTCCAATGAGGGAGAAGAAGTTCATA
1 TCAACATTTCCAATGGAAAGTTCATAATGAGAAAAACCCATCCAACGAGAGAGAAGAAGTTCATA
7751318 ATGAGAAGAACTTGTTCAACATTGGC
66 ATGAGAAGAACTTGTTCAACATTGGC
7751344 TCAAC
1 TCAAC
7751349 TTATCTATCA
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (91 bp):
TCAACATTTCCAATGGAAAGTTCATAATGAGAAAAACCCATCCAACGAGAGAGAAGAAGTTCATA
ATGAGAAGAACTTGTTCAACATTGGC
Found at i:7751334 original size:20 final size:19
Alignment explanation
Indices: 7751272--7751335 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 19
7751262 CCAGTGGAGA
7751272 GTTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
* **
7751291 CGTCCAATGAGGGAGAAGAA--
1 -GTTC-AT-AATGAGAAGAACT
7751311 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAAC-T
7751331 GTTCA
1 GTTCA
7751336 ACATTGGCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
17 9 0.27
18 2 0.06
19 3 0.09
20 8 0.24
21 2 0.06
22 9 0.27
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.23
Consensus pattern (19 bp):
GTTCATAATGAGAAGAACT
Found at i:7752614 original size:133 final size:134
Alignment explanation
Indices: 7752463--7752747 Score: 394
Period size: 135 Copynumber: 2.1 Consensus size: 134
7752453 CACTGATTTA
* *
7752463 TACTAAATTTTATTTCATTGCACTTTAACCATTGTTATTTA-TTTATTTATTTATTATTTCTAAT
1 TACTAATTTTTATTTCATTGCACTTTAACCATTGTTATTTATTTTATTT-TTTATTACTTCTAAT
* * * * *
7752527 ATTTTATTTGACCTTGTGGTGA-CCGATCCATGGTATGATCTACATTATTATGGTTCAGACTCTG
65 ATTTGATTCGAACTTGTGGTGACCCGATCCAGGGTATGATCCACATTATTATGGTTCAGACTCTG
7752591 CTAAC
130 CTAAC
*
7752596 TACTAATTTTTATTTCATTGCACTTTAACCATTGTTTTTTATTTTTATTTTTTATTACTTCTAAT
1 TACTAATTTTTATTTCATTGCACTTTAACCATTGTTATTTA-TTTTATTTTTTATTACTTCTAAT
* * * *
7752661 ATTTGATTCGAACTTGTGGTGACCCGATTCGGGGTATGATCCACATTATTATTGTTCGGACTCTG
65 ATTTGATTCGAACTTGTGGTGACCCGATCCAGGGTATGATCCACATTATTATGGTTCAGACTCTG
*
7752726 GTAAC
130 CTAAC
*
7752731 CACTAACCTTTTTATTT
1 TACTAA--TTTTTATTT
7752748 TTATTTTATT
Statistics
Matches: 133, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
133 39 0.29
134 33 0.25
135 52 0.39
137 9 0.07
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48
Consensus pattern (134 bp):
TACTAATTTTTATTTCATTGCACTTTAACCATTGTTATTTATTTTATTTTTTATTACTTCTAATA
TTTGATTCGAACTTGTGGTGACCCGATCCAGGGTATGATCCACATTATTATGGTTCAGACTCTGC
TAAC
Found at i:7756497 original size:35 final size:34
Alignment explanation
Indices: 7756453--7756565 Score: 163
Period size: 35 Copynumber: 3.2 Consensus size: 34
7756443 AAAACAATTC
*
7756453 TCAATTTCATTCTAAACCACAAATTCCAAAGTAAT
1 TCAATTTCATTCTAAACC-CAAATTCCAAAATAAT
7756488 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCC-AAATTCCAAAATAAT
* * *
7756523 TCAATTACATTCTAAAACCCAAATTCTAAAATACT
1 TCAATTTCATTCT-AAACCCAAATTCCAAAATAAT
7756558 TCAATTTC
1 TCAATTTC
7756566 TATCTTTTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
34 1 0.01
35 64 0.90
36 6 0.08
ACGTcount: A:0.42, C:0.23, G:0.01, T:0.34
Consensus pattern (34 bp):
TCAATTTCATTCTAAACCCAAATTCCAAAATAAT
Found at i:7757623 original size:35 final size:34
Alignment explanation
Indices: 7757575--7757686 Score: 136
Period size: 35 Copynumber: 3.2 Consensus size: 34
7757565 ATTTCTCCTT
*
7757575 AAATTGAAGTATTTTAGAATTTGGGGTTTAGAAT-
1 AAATTGAATTATTTT-GAATTTGGGGTTTAGAATG
*
7757609 ATAATTGAATTATTTTGGAATTTAGGGTTTAGAATG
1 A-AATTGAATTATTTT-GAATTTGGGGTTTAGAATG
* * *
7757645 AAATTGAATTACTTTGAAATTTGGGATTTATAATG
1 AAATTGAATTATTTTG-AATTTGGGGTTTAGAATG
7757680 AAATTGA
1 AAATTGA
7757687 GGAATGTTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
34 2 0.03
35 65 0.96
36 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.21, T:0.42
Consensus pattern (34 bp):
AAATTGAATTATTTTGAATTTGGGGTTTAGAATG
Found at i:7759226 original size:29 final size:31
Alignment explanation
Indices: 7759194--7759260 Score: 93
Period size: 29 Copynumber: 2.2 Consensus size: 31
7759184 AATTTGATAA
**
7759194 AATTATACATAT-ATAATTTAAT-TTAATTT
1 AATTATACATATAATAATTTAATATTAATCC
*
7759223 AATTATACATATAATATTTTAATATTAATCC
1 AATTATACATATAATAATTTAATATTAATCC
7759254 AATTATA
1 AATTATA
7759261 TAAATTTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 12 0.36
30 9 0.27
31 12 0.36
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (31 bp):
AATTATACATATAATAATTTAATATTAATCC
Found at i:7759317 original size:2 final size:2
Alignment explanation
Indices: 7759303--7759365 Score: 96
Period size: 2 Copynumber: 33.0 Consensus size: 2
7759293 TATTAAATAA
7759303 AT AT AT A- AT -T AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7759342 AT AT AT AT AT AT AT AT AT CT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
7759366 GAACATATAA
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
1 3 0.05
2 53 0.95
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7759321 original size:27 final size:28
Alignment explanation
Indices: 7759271--7759356 Score: 90
Period size: 31 Copynumber: 3.0 Consensus size: 28
7759261 TAAATTTCAA
7759271 AAATAAAATATATTAATT-T-T-TATAT-T
1 AAAT-AAATATA-TAATTATATATATATAT
7759297 AAATAAATATATAATTATATATATATAT
1 AAATAAATATATAATTATATATATATAT
*
7759325 AATATATATATATATATATATATATATATAT
1 AA-ATAAATATATA-AT-TATATATATATAT
7759356 A
1 A
7759357 TATCTATATG
Statistics
Matches: 52, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
24 5 0.10
25 8 0.15
26 5 0.10
27 5 0.10
28 3 0.06
29 10 0.19
30 2 0.04
31 14 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
AAATAAATATATAATTATATATATATAT
Found at i:7765369 original size:49 final size:49
Alignment explanation
Indices: 7765312--7765429 Score: 191
Period size: 49 Copynumber: 2.4 Consensus size: 49
7765302 TTTATTCTAG
*
7765312 AATGCACCGTTATGCATTTAACTTTCATTAGTGGCACCTTTTATGCCGA
1 AATGCACCGTTATGCATTTAACTTTCATTAGTGGCACCTTTTATGACGA
* *
7765361 AATTCACCGTTATGCATTTAACTTTTATTAGTGGCACCTTTTATGACGA
1 AATGCACCGTTATGCATTTAACTTTCATTAGTGGCACCTTTTATGACGA
* *
7765410 AATGCACTGTTATGTATTTA
1 AATGCACCGTTATGCATTTA
7765430 TTTTAGAACC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 63 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (49 bp):
AATGCACCGTTATGCATTTAACTTTCATTAGTGGCACCTTTTATGACGA
Found at i:7772250 original size:49 final size:49
Alignment explanation
Indices: 7772188--7772350 Score: 227
Period size: 49 Copynumber: 3.3 Consensus size: 49
7772178 AAATACCATG
*
7772188 AGTGGCACATTTTATGCCGAAATGCATCGTTATGCATTTAACTTTTATT
1 AGTGGCACATTTTATGCCGAAATGCACCGTTATGCATTTAACTTTTATT
* *
7772237 AGTGGCACCTTTTATGCCGAAATGCACCGTTATGCATTTAACTTTCATT
1 AGTGGCACATTTTATGCCGAAATGCACCGTTATGCATTTAACTTTTATT
* *** * * *
7772286 AGTGGCACCTTTTATGATAAAATTCACCGTTATTCATTTAAGTTTTATT
1 AGTGGCACATTTTATGCCGAAATGCACCGTTATGCATTTAACTTTTATT
*
7772335 AGTGGCATATTTTATG
1 AGTGGCACATTTTATG
7772351 ACGTAATACA
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 102 1.00
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (49 bp):
AGTGGCACATTTTATGCCGAAATGCACCGTTATGCATTTAACTTTTATT
Found at i:7777290 original size:12 final size:13
Alignment explanation
Indices: 7777264--7777296 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7777254 TTGTTTTCCA
*
7777264 TTTTTTTCATGTC
1 TTTTTTTCATCTC
7777277 TTTTTTTC-TCTC
1 TTTTTTTCATCTC
7777289 TTTTTTTC
1 TTTTTTTC
7777297 GAACAACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTTTTCATCTC
Found at i:7779043 original size:18 final size:17
Alignment explanation
Indices: 7779022--7779073 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
7779012 AACAAAAATA
7779022 AAAAGAAAAAATAAAAAG
1 AAAA-AAAAAATAAAAAG
* **
7779040 AAAAAAATTAATGGAAAG
1 AAAAAAA-AAATAAAAAG
7779058 AAAAAAAATAATAAAA
1 AAAAAAAA-AATAAAA
7779074 TAATGGGTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.12
Consensus pattern (17 bp):
AAAAAAAAAATAAAAAG
Found at i:7779047 original size:14 final size:13
Alignment explanation
Indices: 7779015--7779045 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7779005 CTGGTCGAAC
7779015 AAAAATAAAAAGA
1 AAAAATAAAAAGA
7779028 AAAAATAAAAAGA
1 AAAAATAAAAAGA
7779041 AAAAA
1 AAAAA
7779046 ATTAATGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.06, T:0.06
Consensus pattern (13 bp):
AAAAATAAAAAGA
Found at i:7779078 original size:26 final size:27
Alignment explanation
Indices: 7779026--7779079 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
7779016 AAAATAAAAA
7779026 GAAAAAATAAAAAGAAAAAAATTAATG
1 GAAAAAATAAAAAGAAAAAAATTAATG
* *
7779053 GAAAGAAA-AAAAATAATAAAA-TAATG
1 GAAA-AAATAAAAAGAAAAAAATTAATG
7779079 G
1 G
7779080 GTTGCCTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.25
27 15 0.62
28 3 0.12
ACGTcount: A:0.72, C:0.00, G:0.13, T:0.15
Consensus pattern (27 bp):
GAAAAAATAAAAAGAAAAAAATTAATG
Found at i:7784620 original size:18 final size:18
Alignment explanation
Indices: 7784574--7784627 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
7784564 GATTTTAGTA
*
7784574 AAAAGATATTAAA-ATAAT
1 AAAAGAAATTAAATA-AAT
**
7784592 AAAAGCGATTAAATAAAT
1 AAAAGAAATTAAATAAAT
7784610 AAAAGAAATTAAAGTAAA
1 AAAAGAAATTAAA-TAAA
7784628 AATAAGAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 25 0.83
19 5 0.17
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (18 bp):
AAAAGAAATTAAATAAAT
Found at i:7785890 original size:65 final size:64
Alignment explanation
Indices: 7785757--7785891 Score: 141
Period size: 65 Copynumber: 2.1 Consensus size: 64
7785747 TCATGGATAT
* ** ** * *
7785757 ATTACTTACTAAATTCTATACATATAAACTATTAAAATATTACAGTTATTTATTATGAGTATAT
1 ATTACTTACTAAATTCTATACATATAAACTATTAAAACATTACAGCCATAGAATATGAGTATAC
*
7785821 ATTACTTACTAAAGTTCTATACATATAAACTATTACAAACACTTA-TGCCATAGACATATGAG-A
1 ATTACTTACTAAA-TTCTATACATATAAACTATTA-AAACA-TTACAGCCATAGA-ATATGAGTA
7785884 T-C
62 TAC
7785886 ATTACT
1 ATTACT
7785892 AGCCTATTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
64 13 0.22
65 27 0.46
66 10 0.17
67 9 0.15
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (64 bp):
ATTACTTACTAAATTCTATACATATAAACTATTAAAACATTACAGCCATAGAATATGAGTATAC
Found at i:7802225 original size:54 final size:54
Alignment explanation
Indices: 7802009--7802940 Score: 1147
Period size: 54 Copynumber: 17.4 Consensus size: 54
7801999 ATGTGTAAAG
* * *
7802009 TCGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTT-TAGAA-AACCTTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTAT-GAACGACCGTA
** * * * *
7802062 TCAACACTAAGTGTCCAACCCACAAAATTCATAATAAGTTTATGAATGATCGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
*
7802116 TCGGCACTAAGTGTGCAACCCACG-GATTCATAATAAGTTTATGAACGACCGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* *
7802169 TCGGCACTAAGTGTGCAACCCATGAAATTCATAATAAGTTTATGAACGACCATA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* *
7802223 TCGGCACTAAGTGTTCAACCCAC-ATAATTCATAATAAGTTTATGAACGATCGTA
1 TCGGCACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCGTA
* * *
7802277 TCGGCACTAAGTGTGCAACCCATGGAATTCATAATATGTTTATGAACGACCGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* * *
7802331 TCGGCACTAAGTGTGCAACCCATGAAATTTATAATAAGTTTAT----GACCATA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* * * * *
7802381 TCGACACTAAGTGTACAACCCAC-ATAATTCATAACAAGTTTATGAACGATCATA
1 TCGGCACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCGTA
* * *
7802435 TCGGCACTAAGTGTGCAACCCACGGAATTCATAATATGTTTATGAACAACCGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* * * *
7802489 TCGGCACTAAGTGTGCAACCCATGAAATTCATAATAAGTTTATGAATGATCATA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* * * *
7802543 TTGGCACTAAGTGTGTAACCCTCGAAATTCATAATAAGTTTATTAACGACCGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
*
7802597 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAATGACCGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* * * **
7802651 TTGGCACCAAGTGTGCAACCCA-AAGAATTCATAATAAGTTTATGAAAAACCGTA
1 TCGGCACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCGTA
* * * * *
7802705 TCGACACTAAGTGTGCAACCCAAGAAATTCATAGTAAGTTTATGAATGACTGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* *
7802759 TCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCCTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
** * * *
7802813 TCAACACTAAGTGTGCAACCGAAGAAATTGATAATAAGTTTATGAACGACCGTA
1 TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
* * * * *
7802867 TTGGCACTAAGGGTGCAACCTACTG-AATTCACAA-AGAG--TATGAATGACCGTA
1 TCGGCACTAAGTGTGCAACCCAC-GAAATTCATAATA-AGTTTATGAACGACCGTA
* *
7802919 TCGACACTATA-TGTGCACCCCA
1 TCGGCACTA-AGTGTGCAACCCA
7802941 AGGATTTCAA
Statistics
Matches: 763, Mismatches: 100, Indels: 33
0.85 0.11 0.04
Matches are distributed among these distances:
49 1 0.00
50 42 0.06
52 28 0.04
53 94 0.12
54 596 0.78
55 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (54 bp):
TCGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTA
Found at i:7803518 original size:2 final size:2
Alignment explanation
Indices: 7803511--7803540 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7803501 GACATGTTTA
7803511 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7803541 TTGAAGAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7808092 original size:54 final size:54
Alignment explanation
Indices: 7807809--7808080 Score: 447
Period size: 54 Copynumber: 5.0 Consensus size: 54
7807799 TATCGAATGA
* *
7807809 CACTATGTGTGCAACTTAAGAATTTCATAATAAGTTTATGAATTTAT-GTATTGG
1 CACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTT-TCGTATTGG
* *
7807863 CACTGTGTGTGCAACTTAAGAAATTTATAATAAGTTTATGAATTTCCGTATTGG
1 CACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGG
* *
7807917 CACTATGTGTGCAACTTAAGAAATTCATAATAAGTTTATTAATTTTCGTATTGG
1 CACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGG
*
7807971 CACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTCCGTATTGG
1 CACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGG
* *
7808025 AACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTCATATTGG
1 CACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGG
7808079 CA
1 CA
7808081 TTGGAAGTGC
Statistics
Matches: 202, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
54 202 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (54 bp):
CACTGTGTGTGCAACTTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGG
Found at i:7815890 original size:54 final size:54
Alignment explanation
Indices: 7815808--7816473 Score: 819
Period size: 54 Copynumber: 12.4 Consensus size: 54
7815798 CTATGTGTAC
*
7815808 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCT
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
* *
7815862 TATCGACACTAAGTATGCAACCCACGAAATTCATAATAAGTTTATGAATGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
* * *
7815916 TATCGACACTAAGTATGCAACCCAC-ATAATTTATAATATGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCG
* * * *
7815970 TATCAACACTATGTGTGTAACCCAC-ATAATTCATAATAAGTTTATGAACGATCG
1 TATCGACACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCG
* * *
7816024 TATCAAGACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACTG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
** * *
7816078 TATCGACACTAAGTACGCAACCCACGTAATTCATAATATGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
* *
7816132 TATC-ACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAATGATCG
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
* * *
7816185 TAT-TAGCACTAAGTGGGCAACCCAC-AGAATTCATAATAATTTTATGAACGACCG
1 TATCGA-CACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCG
* *
7816239 TATCGACACTAAGTGTGCAACCCATGAAATTCATAATAAGTTTATGAACGACCT
1 TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
* * **
7816293 TATCG-CTACTAAGTGTGTAACCCACGAAATTCATAATAAGTTTATGAAGGATTG
1 TATCGAC-ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
* * * * * *
7816347 TATTGGCACTAAGTTTACAACCCAC-AGAATTTATAATAAGTTTATGAACGACTG
1 TATCGACACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCG
* * * * * * *
7816401 TATTGGCACTAAGGGTGCAACCCAC-AGAATTCACAATGAGTTTGTGAATGACCG
1 TATCGACACTAAGTGTGCAACCCACGA-AATTCATAATAAGTTTATGAACGACCG
*
7816455 TATCGGCACTATA-TGTGCA
1 TATCGACACTA-AGTGTGCA
7816474 CTCTAAAGAT
Statistics
Matches: 537, Mismatches: 64, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
53 51 0.09
54 481 0.90
55 5 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (54 bp):
TATCGACACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCG
Found at i:7816413 original size:27 final size:27
Alignment explanation
Indices: 7816329--7816413 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
7816319 AAATTCATAA
* *
7816329 TAAGTTTATGAAGGATTGTATTGGCAC
1 TAAGTTTATGAACGACTGTATTGGCAC
* * * * *** *
7816356 TAAGTTTA-CAACCCACAGAATTTATAA
1 TAAGTTTATGAA-CGACTGTATTGGCAC
7816383 TAAGTTTATGAACGACTGTATTGGCAC
1 TAAGTTTATGAACGACTGTATTGGCAC
7816410 TAAG
1 TAAG
7816414 GGTGCAACCC
Statistics
Matches: 38, Mismatches: 18, Indels: 4
0.63 0.30 0.07
Matches are distributed among these distances:
26 2 0.05
27 34 0.89
28 2 0.05
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (27 bp):
TAAGTTTATGAACGACTGTATTGGCAC
Found at i:7822640 original size:21 final size:22
Alignment explanation
Indices: 7822602--7822651 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
7822592 TATATACTTA
*
7822602 TATATATTTTCAAAAACTATAT
1 TATATATTTTCAAAAACTACAT
*
7822624 TATATATTTT-TAAAACTACAT
1 TATATATTTTCAAAAACTACAT
7822645 TATATAT
1 TATATAT
7822652 ATATATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (22 bp):
TATATATTTTCAAAAACTACAT
Found at i:7823820 original size:202 final size:203
Alignment explanation
Indices: 7823379--7823833 Score: 479
Period size: 202 Copynumber: 2.2 Consensus size: 203
7823369 TTAGTTGATT
* * *
7823379 AATCGTAG-TCGATTTGAGGTCTCCTTCTTGACTTAAAGACCTTAGTTTGAATTTTGATCAAAAT
1 AATCGTAGCTC-ATTTGGGGTCTCCTTCTTGACTTAAAGACCTCAGTTTGAATTTTGACCAAAAT
* * * * * *
7823443 GTAGTTCATGGTTGCTACCACGAGGTCAATGTGCTCCTGAGTCGAGTGGAATCAAACTTGAAAAG
65 ATAGTTCATCGTTGCTACCACGAGATCAACGTGCTCCTGAGTCGAATGAAATCAAACTTGAAAAG
* * * * * **
7823508 CTTTGATAAACAAATAACTCTTTTCGACTTAAGCTGTGTCGAAATCCAAGCTGGGAAGTAGTTTC
130 CTTTGATAAACAAATAACTCTTCTCAACTTAAGCTATGTCAAAATCCAAGCTGGGAAATAGTCCC
* *
7823573 TCGTTGCTA
195 TCATTACTA
* * * * *
7823582 AATTGTAGCCCAATTGGGGTCTCCTTCTTGACTTAAAGTCCTCAGTTTGAATTTTGACCAGAATA
1 AATCGTAGCTCATTTGGGGTCTCCTTCTTGACTTAAAGACCTCAGTTTGAATTTTGACCAAAATA
* * * **
7823647 TAGTTCCTCGTTGCTACCATGCA-ATGAACGTGCT-CTCGAG-CTGAATGAAATTGAACTTG-AA
66 TAGTTCATCGTTGCTACCACG-AGATCAACGTGCTCCT-GAGTC-GAATGAAATCAAACTTGAAA
* * * * ***
7823708 ATCTTTGATCAACAAATAGCTCTTCTCAACTTAAGCTATGTTAAAATCTGGGCTGGGAAATAGTC
128 AGCTTTGATAAACAAATAACTCTTCTCAACTTAAGCTATGTCAAAATCCAAGCTGGGAAATAGTC
*
7823773 CCTCATTACTG
193 CCTCATTACTA
** * *
7823784 AATCGTAGCTCATTTGGGGTCTTATTCTTGACTTAAAGACATTAGTTTGA
1 AATCGTAGCTCATTTGGGGTCTCCTTCTTGACTTAAAGACCTCAGTTTGA
7823834 GTGCAGTATT
Statistics
Matches: 204, Mismatches: 44, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
202 106 0.52
203 96 0.47
204 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (203 bp):
AATCGTAGCTCATTTGGGGTCTCCTTCTTGACTTAAAGACCTCAGTTTGAATTTTGACCAAAATA
TAGTTCATCGTTGCTACCACGAGATCAACGTGCTCCTGAGTCGAATGAAATCAAACTTGAAAAGC
TTTGATAAACAAATAACTCTTCTCAACTTAAGCTATGTCAAAATCCAAGCTGGGAAATAGTCCCT
CATTACTA
Found at i:7842791 original size:27 final size:26
Alignment explanation
Indices: 7842753--7842805 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
7842743 GACCTAAAAT
* *
7842753 TAAAATAAAAAATAGAATTAAATAAA
1 TAAAATAAAAAATAAAATAAAATAAA
*
7842779 TAAAAGTATAAAATAAAATAAAATAAA
1 TAAAA-TAAAAAATAAAATAAAATAAA
7842806 ATATGTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.23
Consensus pattern (26 bp):
TAAAATAAAAAATAAAATAAAATAAA
Found at i:7842839 original size:26 final size:24
Alignment explanation
Indices: 7842747--7842845 Score: 75
Period size: 26 Copynumber: 4.1 Consensus size: 24
7842737 ACTTTGGACC
* *
7842747 TAAAATTAAAATAAAA--AATAGAA
1 TAAAA-TAAAATAAAAGTAGTAAAA
*
7842770 TTAAAT-AAATAAAAGTA-TAAAA
1 TAAAATAAAATAAAAGTAGTAAAA
7842792 TAAAATAAAATAAAA-TATGTAAAA
1 TAAAATAAAATAAAAGTA-GTAAAA
7842816 TGGAAACA-AAAATAAAAGTAGTAATAA
1 T--AAA-ATAAAATAAAAGTAGTAA-AA
7842843 TAA
1 TAA
7842846 TATATATATA
Statistics
Matches: 63, Mismatches: 3, Indels: 18
0.75 0.04 0.21
Matches are distributed among these distances:
21 8 0.13
22 12 0.19
23 13 0.21
24 6 0.10
25 2 0.03
26 16 0.25
27 6 0.10
ACGTcount: A:0.69, C:0.01, G:0.07, T:0.23
Consensus pattern (24 bp):
TAAAATAAAATAAAAGTAGTAAAA
Found at i:7842852 original size:2 final size:2
Alignment explanation
Indices: 7842845--7842921 Score: 136
Period size: 2 Copynumber: 38.5 Consensus size: 2
7842835 AGTAATAATA
7842845 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
7842887 AT AT AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7842922 ACCTATATTA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7843057 original size:22 final size:22
Alignment explanation
Indices: 7843032--7843088 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
7843022 ACTATTTATT
7843032 TATATATATAT-TTTTTAAAACC
1 TATATATATATATTTTTAAAA-C
*
7843054 TATA-ATATGTATTTTTAAAAC
1 TATATATATATATTTTTAAAAC
*
7843075 TATTTATATATATT
1 TATATATATATATT
7843089 GTATAATAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 9 0.30
22 21 0.70
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (22 bp):
TATATATATATATTTTTAAAAC
Found at i:7843498 original size:24 final size:24
Alignment explanation
Indices: 7843427--7843505 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 24
7843417 TGGATCCTAT
* *
7843427 TTAGTACATTTGAGTACTCCA-GTA
1 TTAGTACTTTTGTGTACT-CATGTA
* *
7843451 TTAGTGCATTTT-TGCACT-ATTGTA
1 TTAGTAC-TTTTGTGTACTCA-TGTA
7843475 TTAGTACTTTTGTGTACTCATGTA
1 TTAGTACTTTTGTGTACTCATGTA
7843499 TTAGTAC
1 TTAGTAC
7843506 ATCCGTGTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
22 1 0.02
23 4 0.09
24 35 0.80
25 4 0.09
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (24 bp):
TTAGTACTTTTGTGTACTCATGTA
Found at i:7843513 original size:24 final size:24
Alignment explanation
Indices: 7843471--7843517 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
7843461 TTTGCACTAT
* **
7843471 TGTATTAGTACTTTTGTGTACTCA
1 TGTATTAGTACATCCGTGTACTCA
7843495 TGTATTAGTACATCCGTGTACTC
1 TGTATTAGTACATCCGTGTACTC
7843518 TTGACACTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.17, G:0.17, T:0.45
Consensus pattern (24 bp):
TGTATTAGTACATCCGTGTACTCA
Found at i:7848281 original size:280 final size:279
Alignment explanation
Indices: 7847762--7848573 Score: 705
Period size: 287 Copynumber: 2.9 Consensus size: 279
7847752 GTGAACTAGA
* * *
7847762 AATTTAGTCCAATTTAATATTAATTGCATCTTTATATTCTACAATTATTTCAATTTGATAACTTT
1 AATTTAGTCCAATTTAATATTAATTGCAGCTTTAAATTCTACAATTATTTCAATTTGATAACTAT
* * *
7847827 GTGTTGTTTAATTATTTAAATTTCACTTTATAATTTTATGTTTGTTCAATTTATTCCTTAAAAGT
66 GTGTTGTTTAATTATTTAAATTTCAATTTATAATTTCATGTTTGTTCAATCTATTCCTTAAAAGT
*
7847892 ATATTTTCATCCCAAATTAGACTATAATTATTTCTATTTTTGTAATTTACTCCAAACCCTATAAA
131 ATATTTTCATCCAAAATTAGACTATAATTATTTCTATTTTTGTAATTTACTCCAAACCCTATAAA
7847957 TCACATCATAAATATCATTTCAAACCATACAAATAATATCATAATCTCCATACATTTTTGTTCAG
196 TCACATCATAAATATCATTTCAAACCATACAAATAATATCATAATCTCCATACATTTTTGTTCAG
7848022 AAACTTTTGAAATGAAGGC
261 AAACTTTTGAAATGAAGGC
** * * * * *
7848041 AATTTAGTCCAATTTAATATTCGTTTCAGCTTTAAATTTTTCAATTGTTTCAATTTGATCCAC-A
1 AATTTAGTCCAATTTAATATTAATTGCAGCTTTAAATTCTACAATTATTTCAATTTGAT-AACTA
* * * * *
7848105 TGTGTTGTTTACTTTATTTAATTTTCAATTTGTAATTTCATGTTTTTTCAATCTAGTT-CTTCAA
65 TGTGTTGTTTA-ATTATTTAAATTTCAATTTATAATTTCATGTTTGTTCAATCTA-TTCCTTAAA
* * * * * *
7848169 ATTATACTTTT-ATTCTAAAATT-CATTCATAATTATTTCTATTTTT-TATTTTACTCCAAACTC
128 AGTATA-TTTTCA-TCCAAAATTAGACT-ATAATTATTTCTATTTTTGTAATTTACTCCAAACCC
* * * * * * *
7848231 TTTAAATCTCATCATAAATTTCATTTCAAACCTTATAAATTATGTCATAATCCTTAAACTCTATA
190 TATAAATCACATCATAAATATCATTTCAAACCATACAAATAATATCATAAT-C-T---C-C-ATA
* * * *
7848296 AATTTTAGTTCACG-AACATTT-AAAGTGAATGC
248 CATTTTTGTTCA-GAAACTTTTGAAA-TGAAGGC
* * * * ** ** * * ** * *
7848328 ATTTTAATCCAAATTGATATTAATTTTAGCTTTCTA-TCTTACAGTTGTTTCAAAATAAT-CCT-
1 AATTTAGTCCAATTTAATATTAATTGCAGCTTTAAATTC-TACAATTATTTCAATTTGATAACTA
* * * * * * * *
7848390 TGTATGTTATTTAATGTATTGAAATTTCACTTTGTAATTTCATGTTTGATCAATTTAATCCTGAA
65 TG--TGTTGTTTAAT-TATTTAAATTTCAATTTATAATTTCATGTTTGTTCAATCTATTCCTTAA
* * ** * * * * * *
7848455 AAGTATATTTTTTATCCGAAATTATCCCATACTAATTTCTATCTTT-TATTTTACTCCAACCCCT
127 AAGTATA-TTTTCATCCAAAATTAGACTATAATTATTTCTATTTTTGTAATTTACTCCAAACCCT
* *
7848519 ATAAATCACATCATAAACT-TCATTTCAAACCCA-ATAAATTATATCATAATCTCCA
191 ATAAATCACATCATAAA-TATCATTTCAAA-CCATACAAATAATATCATAATCTCCA
7848574 AACTTTATAA
Statistics
Matches: 428, Mismatches: 80, Indels: 49
0.77 0.14 0.09
Matches are distributed among these distances:
279 62 0.14
280 111 0.26
281 33 0.08
282 2 0.00
285 5 0.01
286 8 0.02
287 202 0.47
288 5 0.01
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (279 bp):
AATTTAGTCCAATTTAATATTAATTGCAGCTTTAAATTCTACAATTATTTCAATTTGATAACTAT
GTGTTGTTTAATTATTTAAATTTCAATTTATAATTTCATGTTTGTTCAATCTATTCCTTAAAAGT
ATATTTTCATCCAAAATTAGACTATAATTATTTCTATTTTTGTAATTTACTCCAAACCCTATAAA
TCACATCATAAATATCATTTCAAACCATACAAATAATATCATAATCTCCATACATTTTTGTTCAG
AAACTTTTGAAATGAAGGC
Found at i:7850417 original size:54 final size:54
Alignment explanation
Indices: 7850222--7850415 Score: 257
Period size: 54 Copynumber: 3.6 Consensus size: 54
7850212 GTGTACTATT
*
7850222 GGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAAGGACCGTATC
1 GGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATC
*
7850276 GGCACTAAGTGTGCAACCTACGAAATTCATAATAAG-TTATGAACGACCGTATC
1 GGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATC
** * * * * *
7850329 CACACTAAGTGTGCAACTCACGGAATTCATAATGAGTTTATGAACAATCGTATC
1 GGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATC
* * *
7850383 GGCACTACGTGTGCACCCCAAAGAAATT-ATAAT
1 GGCACTAAGTGTGCAACCC-ACGAAATTCATAAT
7850416 GATTTGAAAA
Statistics
Matches: 121, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 46 0.38
54 69 0.57
55 6 0.05
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (54 bp):
GGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATC
Found at i:7853308 original size:19 final size:19
Alignment explanation
Indices: 7853284--7853329 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
7853274 TAGTGAGAAA
7853284 CAAGGCTAGACTTGTTGCT
1 CAAGGCTAGACTTGTTGCT
7853303 CAAGGCTAGACTTGTTGCT
1 CAAGGCTAGACTTGTTGCT
7853322 CAAGGCTA
1 CAAGGCTA
7853330 TACTCAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (19 bp):
CAAGGCTAGACTTGTTGCT
Found at i:7857685 original size:64 final size:65
Alignment explanation
Indices: 7857611--7857750 Score: 153
Period size: 65 Copynumber: 2.2 Consensus size: 65
7857601 TGCACTATTG
*
7857611 AATGCATCGATACACACC-TAATTTAATTGAAA-ATAGAATGCAT-TATG-TGTACTGATGCACA
1 AATGCATCGATACACACCAT-ATTTAATTGAAACATAGAATGC-TCT-TGATGTACCGATGCACA
*
7857672 TAC
63 GAC
* * * * *
7857675 AATGCATCGATGCACTCCATGTTTTATTGAAACATCGAATGCTCTTGATGTACCGATGCACAGAC
1 AATGCATCGATACACACCATATTTAATTGAAACATAGAATGCTCTTGATGTACCGATGCACAGAC
*
7857740 CATGCATCGAT
1 AATGCATCGAT
7857751 GCACTCATAG
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
64 29 0.45
65 35 0.55
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (65 bp):
AATGCATCGATACACACCATATTTAATTGAAACATAGAATGCTCTTGATGTACCGATGCACAGAC
Found at i:7857798 original size:65 final size:65
Alignment explanation
Indices: 7857636--7857800 Score: 180
Period size: 65 Copynumber: 2.6 Consensus size: 65
7857626 ACCTAATTTA
* * *
7857636 ATTGAAA-ATAGAATGC-ATTATGTGTACTGATGCACATACAATGCATCGATGCACTCCATGTTT
1 ATTGAAACATCGAATGCTATTA-GTGTACTGATGCACAGACAATGCATCGATGCACTCCATGTCT
7857699 T
65 T
* * *
7857700 ATTGAAACATCGAATGCTCTT-GATGTACCGATGCACAGACCATGCATCGATGCACT-CATAGCT
1 ATTGAAACATCGAATGCTATTAG-TGTACTGATGCACAGACAATGCATCGATGCACTCCAT-G-T
7857763 CTT
63 CTT
*
7857766 -TTGAAACATCGAATG-TAATTAGTGTATTGATGCAC
1 ATTGAAACATCGAATGCT-ATTAGTGTACTGATGCAC
7857801 CCCAGGTGTA
Statistics
Matches: 85, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
64 12 0.14
65 67 0.79
66 6 0.07
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (65 bp):
ATTGAAACATCGAATGCTATTAGTGTACTGATGCACAGACAATGCATCGATGCACTCCATGTCTT
Found at i:7857886 original size:21 final size:21
Alignment explanation
Indices: 7857860--7857915 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
7857850 TTTACACACA
7857860 GTGTACCGATGCACCTTGATG
1 GTGTACCGATGCACCTTGATG
*
7857881 GTGTACCGATTCACCTTGATG
1 GTGTACCGATGCACCTTGATG
*
7857902 GTGTACTGATGCAC
1 GTGTACCGATGCAC
7857916 AGACGCTCTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (21 bp):
GTGTACCGATGCACCTTGATG
Found at i:7863148 original size:30 final size:28
Alignment explanation
Indices: 7863085--7863165 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 28
7863075 CCAAAATATA
*
7863085 AAACTTTTAAAAATTAAATTTTGTCACT
1 AAACTTTTAAAAATTAAATTTTGCCACT
* * *
7863113 GAACTTTTATAAAGATTTACTTTTGCCACT
1 AAACTTTTA-AAA-ATTAAATTTTGCCACT
* * *
7863143 AAACTTTCAAAACTTACATTTTG
1 AAACTTTTAAAAATTAAATTTTG
7863166 GTCACTAGCA
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
28 15 0.37
29 6 0.15
30 20 0.49
ACGTcount: A:0.37, C:0.15, G:0.06, T:0.42
Consensus pattern (28 bp):
AAACTTTTAAAAATTAAATTTTGCCACT
Found at i:7866130 original size:2 final size:2
Alignment explanation
Indices: 7866123--7866174 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
7866113 TAATGTATGA
7866123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7866165 AT AT AT AT AT
1 AT AT AT AT AT
7866175 TAGAATAGAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7866313 original size:17 final size:17
Alignment explanation
Indices: 7866291--7866324 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7866281 CCTTGCATCT
7866291 TCAAATAACTCGATAGA
1 TCAAATAACTCGATAGA
7866308 TCAAATAACTCGATAGA
1 TCAAATAACTCGATAGA
7866325 ATAGATCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.24
Consensus pattern (17 bp):
TCAAATAACTCGATAGA
Found at i:7867815 original size:23 final size:23
Alignment explanation
Indices: 7867789--7867837 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
7867779 ATAAAGAACC
*
7867789 AAAATAAACT-TAAATATACGATT
1 AAAATAAACTCTAAATAT-CCATT
*
7867812 AAAATAAAGTCTAAATATCCATT
1 AAAATAAACTCTAAATATCCATT
7867835 AAA
1 AAA
7867838 CCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.57, C:0.10, G:0.04, T:0.29
Consensus pattern (23 bp):
AAAATAAACTCTAAATATCCATT
Found at i:7871086 original size:20 final size:20
Alignment explanation
Indices: 7871050--7871094 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7871040 GATAAAAAGT
*
7871050 AAAAGTTAAAAATGAAATAG
1 AAAAGTTAAAAATGAAAGAG
*
7871070 AAAAGTTAAGGAA-GAAAGAG
1 AAAAGTTAA-AAATGAAAGAG
7871090 AAAAG
1 AAAAG
7871095 AAAAAGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.64, C:0.00, G:0.22, T:0.13
Consensus pattern (20 bp):
AAAAGTTAAAAATGAAAGAG
Found at i:7875660 original size:21 final size:21
Alignment explanation
Indices: 7875634--7875674 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7875624 GCTATGGCTT
*
7875634 TGAAGTAAGGCGCCTTGATTA
1 TGAAGTAAAGCGCCTTGATTA
*
7875655 TGAAGTAAAGCTCCTTGATT
1 TGAAGTAAAGCGCCTTGATT
7875675 CTTAATTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (21 bp):
TGAAGTAAAGCGCCTTGATTA
Found at i:7879712 original size:57 final size:58
Alignment explanation
Indices: 7879624--7879817 Score: 268
Period size: 59 Copynumber: 3.3 Consensus size: 58
7879614 ATTAGGAAAA
7879624 CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAAGGGAATA-CCCCAGGTC
1 CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAAGGGAATACCCCCAGGTC
* *
7879681 CATAAGGACTTACCCTAGCCGAAGCAAAGGAGCCACCTAAAGGGGAATACCCCCTGGTC
1 CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAA-GGGAATACCCCCAGGTC
* **
7879740 CATAAGGACTTACCCTAAGCACAAAGCAAAGGAGCCACCT-AAGGG-ATAGCCTTAGGATC
1 CATAAGGACTTACCCT-AGC-CAAAGCAAAGGAGCCACCTAAAGGGAATACCCCCAGG-TC
*
7879799 CATAAGGTCTTACCACTAG
1 CATAAGGACTTACC-CTAG
7879818 GCCTATTGGG
Statistics
Matches: 123, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
57 40 0.33
58 14 0.11
59 44 0.36
60 7 0.06
61 18 0.15
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (58 bp):
CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAAGGGAATACCCCCAGGTC
Found at i:7879801 original size:59 final size:57
Alignment explanation
Indices: 7879624--7879817 Score: 259
Period size: 57 Copynumber: 3.3 Consensus size: 57
7879614 ATTAGGAAAA
*
7879624 CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAAGGGAATACCCCAGGTC
1 CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAAGGGAATACCCTAGGTC
*
7879681 CATAAGGACTTACCCTAGCCGAAGCAAAGGAGCCACCTAAAGGGGAATACCCCCT-GGTC
1 CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAA-GGGAATA--CCCTAGGTC
*
7879740 CATAAGGACTTACCCTAAGCACAAAGCAAAGGAGCCACCT-AAGGG-ATAGCCTTAGGATC
1 CATAAGGACTTACCCT-AGC-CAAAGCAAAGGAGCCACCTAAAGGGAATA-CCCTAGG-TC
*
7879799 CATAAGGTCTTACCACTAG
1 CATAAGGACTTACC-CTAG
7879818 GCCTATTGGG
Statistics
Matches: 123, Mismatches: 6, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
57 43 0.35
58 12 0.10
59 40 0.33
60 10 0.08
61 18 0.15
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (57 bp):
CATAAGGACTTACCCTAGCCAAAGCAAAGGAGCCACCTAAAGGGAATACCCTAGGTC
Found at i:7893231 original size:23 final size:23
Alignment explanation
Indices: 7893183--7893232 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
7893173 ATCATGACTA
*
7893183 TTCATGAAAAATAATTAAGTCTT
1 TTCATGAAAAATAATTAAGTCAT
**
7893206 TTCATGAAAAATAATTATTTCAT
1 TTCATGAAAAATAATTAAGTCAT
7893229 TTCA
1 TTCA
7893233 CCCCAAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (23 bp):
TTCATGAAAAATAATTAAGTCAT
Found at i:7893292 original size:21 final size:21
Alignment explanation
Indices: 7893263--7893302 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7893253 CATTTTAACC
*
7893263 TTTTGATCAAAAGGTTAAGAT
1 TTTTAATCAAAAGGTTAAGAT
*
7893284 TTTTAATCAAATGGTTAAG
1 TTTTAATCAAAAGGTTAAG
7893303 TCATTTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (21 bp):
TTTTAATCAAAAGGTTAAGAT
Found at i:7893338 original size:20 final size:20
Alignment explanation
Indices: 7893313--7893354 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7893303 TCATTTCATT
7893313 TAAAGGTCTTAACCTTTAAA
1 TAAAGGTCTTAACCTTTAAA
*
7893333 TAAAGGTCTTAACCTTTCAA
1 TAAAGGTCTTAACCTTTAAA
7893353 TA
1 TA
7893355 CAAATTCCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (20 bp):
TAAAGGTCTTAACCTTTAAA
Found at i:7900115 original size:16 final size:16
Alignment explanation
Indices: 7900087--7900129 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
7900077 TCTCAACTGC
* *
7900087 ATATATTTATTATTTT
1 ATATATTTTTTATATT
*
7900103 ATTTATTTTTTATATT
1 ATATATTTTTTATATT
*
7900119 GTATATTTTTT
1 ATATATTTTTT
7900130 TAATTTCTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (16 bp):
ATATATTTTTTATATT
Found at i:7902239 original size:20 final size:20
Alignment explanation
Indices: 7902214--7902252 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7902204 TCTAGGTTTG
7902214 AGTATCGATACTAGATGAAT
1 AGTATCGATACTAGATGAAT
7902234 AGTATCGATACTAGATGAA
1 AGTATCGATACTAGATGAA
7902253 CTATGATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (20 bp):
AGTATCGATACTAGATGAAT
Found at i:7902987 original size:3 final size:3
Alignment explanation
Indices: 7902974--7903012 Score: 69
Period size: 3 Copynumber: 12.7 Consensus size: 3
7902964 TCAAAATATA
7902974 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7903013 AACATATAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7904472 original size:82 final size:83
Alignment explanation
Indices: 7904384--7904536 Score: 193
Period size: 83 Copynumber: 1.9 Consensus size: 83
7904374 CACCCATTGG
* * * * * * **
7904384 GTATCGATACTCAC-TTAGTATTGTTACCAAAATTT-TCTTTGATGTTTTGAAAAATACCTTGGT
1 GTATCGATACTCACGTGAGTATCGATACC-AAATTTGGCTTTGATATTTTAAAAAATACCTCAGT
7904447 ATTGATACTCCAACGGGGA
65 ATTGATACTCCAACGGGGA
* *
7904466 GTATCGATACTCCCGTGAGTATCGATACCAAATTTGGCTTTGATATTTTAAAAAATGCCTCAGTA
1 GTATCGATACTCACGTGAGTATCGATACCAAATTTGGCTTTGATATTTTAAAAAATACCTCAGTA
7904531 TTGATA
66 TTGATA
7904537 ATGACCTTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
82 19 0.32
83 40 0.68
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (83 bp):
GTATCGATACTCACGTGAGTATCGATACCAAATTTGGCTTTGATATTTTAAAAAATACCTCAGTA
TTGATACTCCAACGGGGA
Found at i:7910222 original size:18 final size:18
Alignment explanation
Indices: 7910180--7910215 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
7910170 CTTCATTGGG
7910180 AAGCCAAAACAAGAAGAA
1 AAGCCAAAACAAGAAGAA
7910198 AAGCCAAAACAA-AAGAA
1 AAGCCAAAACAAGAAGAA
7910215 A
1 A
7910216 TTTCCAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.69, C:0.17, G:0.14, T:0.00
Consensus pattern (18 bp):
AAGCCAAAACAAGAAGAA
Found at i:7913469 original size:44 final size:44
Alignment explanation
Indices: 7913404--7913488 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
7913394 AACCAAAATG
* *
7913404 AATCATTAGAAGACTAATCGGCCAAGGGAGATGTTCATCCAATA
1 AATCATCACAAGACTAATCGGCCAAGGGAGATGTTCATCCAATA
* *
7913448 AATCATCACAAGACTATTCGGCCAAGGGAGATGTTCTTCCA
1 AATCATCACAAGACTAATCGGCCAAGGGAGATGTTCATCCA
7913489 TTATAGCCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (44 bp):
AATCATCACAAGACTAATCGGCCAAGGGAGATGTTCATCCAATA
Done.