Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 56
Found at i:7916320 original size:54 final size:54
Alignment explanation
Indices: 7916256--7916697 Score: 530
Period size: 54 Copynumber: 8.2 Consensus size: 54
7916246 CCAAATCGGA
** *
7916256 ACTAAGTGTGCAACAAACAAAATTAATAATAAGTTTATGAACGACCGTATCGAC
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
* *** ** *
7916310 ACTAAGTGTGCAACCTATGGAATTCATAAT-AGTTTATGAACGACATTATCAAC
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
** *
7916363 ACTAAGTGTGCAACCCACGGAATTCATAATAACTTTATGAACGACCGTATCGAC
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
* * * *
7916417 ACTAAGTGTGCAACCCACATAATTCATAATAAGTTTAAGAA-TACCGTATTGAC
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
* * * *
7916470 ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGATCGTATCAAT
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
* * * ***
7916524 ACTATGTGTACAACCCACAGAATTCATAATAAGTTTATGAACGACAACATC-AGC
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGA-C
** * *
7916578 ACTAAGTGTGCAACCCATGAAATTCATAATAAGTTTATAAACGACCGTATGGAC
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
* * * *
7916632 ACTAAGTGTGCAACCCACAAAATTCATAATGAGCTTATGAATGACCGTATCGGC
1 ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
*
7916686 ACTACGTGTGCA
1 ACTAAGTGTGCA
7916698 CCTCAAAGAA
Statistics
Matches: 327, Mismatches: 57, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
53 97 0.30
54 229 0.70
55 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (54 bp):
ACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGACCGTATCGAC
Found at i:7916442 original size:107 final size:108
Alignment explanation
Indices: 7916256--7916672 Score: 550
Period size: 107 Copynumber: 3.9 Consensus size: 108
7916246 CCAAATCGGA
** * *
7916256 ACTAAGTGTGCAACAAACAAAATTAATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGC
1 ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGC
* ** *
7916321 AACCTATGGAATTCATAAT-AGTTTATGAACGACATTATCAAC
66 AACCCACAGAATTCATAATAAGTTTATGAACGACAATATCAAC
* *
7916363 ACTAAGTGTGCAACCCACGGAATTCATAATAACTTTATGAACGACCGTATCGACACTAAGTGTGC
1 ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGC
* * * ** **
7916428 AACCCACATAATTCATAATAAGTTTAAGAA-TACCGTATTGAC
66 AACCCACAGAATTCATAATAAGTTTATGAACGACAATATCAAC
* * * * *
7916470 ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGATCGTATCAATACTATGTGTAC
1 ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGC
* *
7916535 AACCCACAGAATTCATAATAAGTTTATGAACGACAACATCAGC
66 AACCCACAGAATTCATAATAAGTTTATGAACGACAATATCAAC
* * *
7916578 ACTAAGTGTGCAACCCATGAAATTCATAATAAGTTTATAAACGACCGTATGGACACTAAGTGTGC
1 ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGC
* * *
7916643 AACCCACAAAATTCATAATGAGCTTATGAA
66 AACCCACAGAATTCATAATAAGTTTATGAA
7916673 TGACCGTATC
Statistics
Matches: 265, Mismatches: 43, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
107 167 0.63
108 98 0.37
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (108 bp):
ACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGC
AACCCACAGAATTCATAATAAGTTTATGAACGACAATATCAAC
Found at i:7916540 original size:161 final size:159
Alignment explanation
Indices: 7916256--7916682 Score: 536
Period size: 161 Copynumber: 2.6 Consensus size: 159
7916246 CCAAATCGGA
** * *
7916256 ACTAAGTGTGCAACAAACAAAATTAATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGC
1 ACTAAGTGTGCAACCCAC-AAATTCATAATAAGTTTAAGAACGACCGTATCGACACTAAGTGTGC
* * * * * *
7916321 AACCTATGGAATTCATAATAGTTTATGAACGACATTATCAACACTAAGTGTGCAACCCACGGAAT
65 AACCCACGAAATTCATAATAGTTTATGAACGAC-GTATCAACACTAAGTGTACAACCCACAGAAT
***
7916386 TCATAATAACTTTATGAACGACCGTATC-GAC
129 TCATAATAACTTTATGAACGACAACATCAG-C
* *
7916417 ACTAAGTGTGCAACCCACATAATTCATAATAAGTTTAAGAA-TACCGTATTGACACTAAGTGTGC
1 ACTAAGTGTGCAACCCACA-AATTCATAATAAGTTTAAGAACGACCGTATCGACACTAAGTGTGC
* *
7916481 AACCCACGAAATTCATAATAAGTTTATGAACGATCGTATCAATACTATGTGTACAACCCACAGAA
65 AACCCACGAAATTCATAAT-AGTTTATGAACGA-CGTATCAACACTAAGTGTACAACCCACAGAA
*
7916546 TTCATAATAAGTTTATGAACGACAACATCAGC
128 TTCATAATAACTTTATGAACGACAACATCAGC
* *
7916578 ACTAAGTGTGCAACCCATGAAATTCATAATAAGTTTATA-AACGACCGTATGGACACTAAGTGTG
1 ACTAAGTGTGCAACCCA-CAAATTCATAATAAGTTTA-AGAACGACCGTATCGACACTAAGTGTG
* * *
7916642 CAACCCACAAAATTCATAATGAGCTTATGAATGACCGTATC
64 CAACCCACGAAATTCATAAT-AGTTTATGAACGA-CGTATC
7916683 GGCACTACGT
Statistics
Matches: 233, Mismatches: 26, Indels: 13
0.86 0.10 0.05
Matches are distributed among these distances:
160 38 0.16
161 135 0.58
162 60 0.26
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (159 bp):
ACTAAGTGTGCAACCCACAAATTCATAATAAGTTTAAGAACGACCGTATCGACACTAAGTGTGCA
ACCCACGAAATTCATAATAGTTTATGAACGACGTATCAACACTAAGTGTACAACCCACAGAATTC
ATAATAACTTTATGAACGACAACATCAGC
Found at i:7922822 original size:20 final size:20
Alignment explanation
Indices: 7922799--7922846 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
7922789 ACCATTACTG
7922799 AAAAATGGATTCCATAATGC
1 AAAAATGGATTCCATAATGC
7922819 AAAAATGGATTCCATAATGC
1 AAAAATGGATTCCATAATGC
7922839 AAAAATGG
1 AAAAATGG
7922847 TATCGATACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (20 bp):
AAAAATGGATTCCATAATGC
Found at i:7923317 original size:54 final size:54
Alignment explanation
Indices: 7923259--7923784 Score: 591
Period size: 54 Copynumber: 9.9 Consensus size: 54
7923249 GCAGGGCACG
* *
7923259 AAATTCATAATAAGTTTATGAATGACCATATCGACACTAAGTGTGCAACCCACA
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* * * * *
7923313 AAATTCATAATAAGTTTATGAAAGACCATATCGACACTAAGT-TGAAAACCAAA
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* * * *
7923366 AAATTCATAATAAGTTTATAAACGATCGTATCGGCAGTAAGTGTGCAACCCACA
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* * * * * *
7923420 GAATTCATAATAAGTTAATGAACTACCGTATCGACACTAACTGTACAACCCACG
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* * * *
7923474 AAATTCATAATAAGTTTATGAATGACCGTATTGGCACTAAGTGTGCAACCCACG
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* * *
7923528 AAATTCATAATAAGTTTACGAACGACCGTCTC-AGCACTAAGTGTGTAACCCACA
1 AAATTCATAATAAGTTTATGAACGACCGTATCGA-CACTAAGTGTGCAACCCACA
* * ** * *
7923582 TAATTCATAATAAGTTTACGAACGGTCGTATCGTCACTAAGTGTTCAACCCACA
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* * * *
7923636 TAATT--T-ATAA---TACGAACGACCGTATTGGCACTAAGTGTGCAACCCACA
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* *
7923684 AAATTCATAATAAGTTTATGAACGTCCGTATCGACACTAAGTGTGCAACCCACT
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
* * * * * * * *
7923738 GAATTCATATTGAGCTTATGAATGATCGTATCGGCACTACGTGTGCA
1 AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCA
7923785 CCCGAAATAA
Statistics
Matches: 398, Mismatches: 65, Indels: 18
0.83 0.14 0.04
Matches are distributed among these distances:
48 37 0.09
50 1 0.00
51 8 0.02
52 1 0.00
53 44 0.11
54 307 0.77
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (54 bp):
AAATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTGCAACCCACA
Found at i:7923614 original size:162 final size:160
Alignment explanation
Indices: 7923260--7923781 Score: 601
Period size: 156 Copynumber: 3.3 Consensus size: 160
7923250 CAGGGCACGA
* * *
7923260 AATTCATAATAAGTTTATGAATGACCATATCGACACTAAGTGTGCAACCCACAAAATTCATAATA
1 AATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCAC-AAATTCATAATA
* * * * * * *
7923325 AGTTTATGAAAGACCATATCGACACTAAGT-TGAAAACCAAAAAATTCATAATAAGTTTATAAAC
65 AGTTTATGAAAGACCGTATTGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAAC
* * *
7923389 GATCGTATCGGCAGTAAGTGTGCAACCCACAG
130 GACCGTATC-GCACTAAGTGTGCAACCCACAT
* * *
7923421 AATTCATAATAAGTTAATGAACTACCGTATCGACACTAACTGTACAACCCACGAAATTCATAATA
1 AATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCAC-AAATTCATAATA
* * *
7923486 AGTTTATGAATGACCGTATTGGCACTAAGTGTGCAACCCACGAAATTCATAATAAGTTTACGAAC
65 AGTTTATGAAAGACCGTATTGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAAC
* *
7923551 GACCGTCTCAGCACTAAGTGTGTAACCCACAT
130 GACCGTATC-GCACTAAGTGTGCAACCCACAT
* ** * *
7923583 AATTCATAATAAGTTTACGAACGGTCGTATCGTCACTAAGTGTTCAACCCACATAATT--T-ATA
1 AATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCACA-AATTCATAATA
* *
7923645 A---TACGAACGACCGTATTGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAAC
65 AGTTTATGAAAGACCGTATTGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAAC
*
7923707 GTCCGTATCGACACTAAGTGTGCAACCCAC-T
130 GACCGTATCG-CACTAAGTGTGCAACCCACAT
* * * * * * *
7923738 GAATTCATATTGAGCTTATGAATGATCGTATCGGCACTACGTGT
1 -AATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGT
7923782 GCACCCGAAA
Statistics
Matches: 311, Mismatches: 46, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
155 2 0.01
156 117 0.38
159 4 0.01
160 1 0.00
161 85 0.27
162 102 0.33
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (160 bp):
AATTCATAATAAGTTTATGAACGACCGTATCGACACTAAGTGTACAACCCACAAATTCATAATAA
GTTTATGAAAGACCGTATTGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACG
ACCGTATCGCACTAAGTGTGCAACCCACAT
Found at i:7923759 original size:264 final size:266
Alignment explanation
Indices: 7923255--7923784 Score: 667
Period size: 264 Copynumber: 2.0 Consensus size: 266
7923245 GTTTGCAGGG
* *
7923255 CACGAAATTCATAATAAGTTTATGAATGACCATATCGACACTAAGTGTGCAACCCACAAAATTCA
1 CACGAAATTCATAATAAGTTTACGAACGACCATATCGACACTAAGTGTGCAACCCACAAAATTCA
* *
7923320 TAATAAGTTTATGAAAGACCATATCGACACTAAGTTGAAAACCAAAAAATTCATAATAAGTTTAT
66 TAATAAGTTTACGAAAGACCATATCGACACTAAGTTGAAAACCAAAAAATT-ATAATAA--TTAC
* * *
7923385 AAACGATCGTATCGGCAGTAAGTGTGCAACCCACAGAATTCATAATAAGTTAATGAACTACCGTA
128 AAACGACCGTATCGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTAATGAACTACCGTA
* *
7923450 TCGACACTAACTGTACAACCCACGAAATTCATAATAAGTTTATGAATGACCGTATTGGCACTAAG
193 TCGACACTAACTGTACAACCCACGAAATTCATAATAAGCTTATGAATGACCGTATCGGCACTAAG
7923515 TGTGCAACC
258 TGTGCAACC
* * * *
7923524 CACGAAATTCATAATAAGTTTACGAACGACCGTCTC-AGCACTAAGTGTGTAACCCACATAATTC
1 CACGAAATTCATAATAAGTTTACGAACGACCATATCGA-CACTAAGTGTGCAACCCACAAAATTC
* ** * * ** * * * *
7923588 ATAATAAGTTTACGAACGGTCGTATCGTCACTAAGTGTTCAACCCACATAATT-T-ATAA-TACG
65 ATAATAAGTTTACGAAAGACCATATCGACACTAAGT-TGAAAACCAAAAAATTATAATAATTACA
* *
7923650 AACGACCGTATTGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTTATGAACGT-CCGTA
129 AACGACCGTATCGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTAATGAAC-TACCGTA
* * * * * *
7923714 TCGACACTAAGTGTGCAACCCACTG-AATTCATATTGAGCTTATGAATGATCGTATCGGCACTAC
193 TCGACACTAACTGTACAACCCAC-GAAATTCATAATAAGCTTATGAATGACCGTATCGGCACTAA
7923778 GTGTGCA
257 GTGTGCA
7923785 CCCGAAATAA
Statistics
Matches: 225, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
264 120 0.53
265 2 0.01
267 4 0.02
268 2 0.01
269 86 0.38
270 11 0.05
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (266 bp):
CACGAAATTCATAATAAGTTTACGAACGACCATATCGACACTAAGTGTGCAACCCACAAAATTCA
TAATAAGTTTACGAAAGACCATATCGACACTAAGTTGAAAACCAAAAAATTATAATAATTACAAA
CGACCGTATCGGCACTAAGTGTGCAACCCACAAAATTCATAATAAGTTAATGAACTACCGTATCG
ACACTAACTGTACAACCCACGAAATTCATAATAAGCTTATGAATGACCGTATCGGCACTAAGTGT
GCAACC
Found at i:7938337 original size:2 final size:2
Alignment explanation
Indices: 7938332--7938363 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7938322 AAAAAAAGTA
7938332 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7938364 GAAAGGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7940359 original size:2 final size:2
Alignment explanation
Indices: 7940352--7940405 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
7940342 AAGTGTATTA
7940352 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7940394 AT AT AT AT AT AT
1 AT AT AT AT AT AT
7940406 TTGTGTAATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7942118 original size:17 final size:17
Alignment explanation
Indices: 7942087--7942121 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7942077 GACCGACCCA
**
7942087 ACCCGACCCGTCCGTTG
1 ACCCGACCCAACCGTTG
7942104 ACCCGACCCAACCGTTG
1 ACCCGACCCAACCGTTG
7942121 A
1 A
7942122 ACATTGACCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.46, G:0.20, T:0.14
Consensus pattern (17 bp):
ACCCGACCCAACCGTTG
Found at i:7949249 original size:9 final size:9
Alignment explanation
Indices: 7949211--7949255 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
7949201 GGAAAACTGG
7949211 TTTGACCGA
1 TTTGACCGA
*
7949220 TTTTGACCGG
1 -TTTGACCGA
*
7949230 TCTGAACCGA
1 TTTG-ACCGA
7949240 TTTGACCGA
1 TTTGACCGA
7949249 TTTGACC
1 TTTGACC
7949256 CGACCCGACC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 15 0.50
10 15 0.50
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (9 bp):
TTTGACCGA
Found at i:7949258 original size:19 final size:19
Alignment explanation
Indices: 7949211--7949255 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7949201 GGAAAACTGG
*
7949211 TTTGACCGATTTTGACCGG
1 TTTGACCGATTTTGACCGA
*
7949230 TCTGAACCGA-TTTGACCGA
1 TTTG-ACCGATTTTGACCGA
7949249 TTTGACC
1 TTTGACC
7949256 CGACCCGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 3 0.14
19 14 0.64
20 5 0.23
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (19 bp):
TTTGACCGATTTTGACCGA
Found at i:7951460 original size:18 final size:19
Alignment explanation
Indices: 7951437--7951483 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
7951427 TATTTAAGTG
7951437 ATAAAAGTGA-TTAAATAA
1 ATAAAAGTGATTTAAATAA
**
7951455 ATAAAAGCAATTTAAATAA
1 ATAAAAGTGATTTAAATAA
7951474 A-AATAAGTGA
1 ATAA-AAGTGA
7951484 GTAGAGATTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.62, C:0.02, G:0.11, T:0.26
Consensus pattern (19 bp):
ATAAAAGTGATTTAAATAA
Found at i:7951906 original size:18 final size:18
Alignment explanation
Indices: 7951883--7951932 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
7951873 AAAGTCAATC
7951883 TTTGATTTTGAAAACTGT
1 TTTGATTTTGAAAACTGT
7951901 TTTGATTTTGAAAACTGT
1 TTTGATTTTGAAAACTGT
7951919 TTTGATTTTGAAAA
1 TTTGATTTTGAAAA
7951933 ATAAGCGCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (18 bp):
TTTGATTTTGAAAACTGT
Found at i:7959541 original size:15 final size:16
Alignment explanation
Indices: 7959503--7959543 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7959493 ACAGAGCCTC
7959503 TGAATCATTCAACATT
1 TGAATCATTCAACATT
* *
7959519 TGAATCATTCAGCGTT
1 TGAATCATTCAACATT
7959535 T-AATCATTC
1 TGAATCATTC
7959544 TGAAGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (16 bp):
TGAATCATTCAACATT
Found at i:7960155 original size:16 final size:15
Alignment explanation
Indices: 7960113--7960156 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
7960103 AAAGTACAAC
*
7960113 ATTCCCAGTAATTCT
1 ATTCCCAGTAATCCT
7960128 ATTCCCAGTAATCCT
1 ATTCCCAGTAATCCT
7960143 ATTCCCTAGTAATC
1 ATTCCC-AGTAATC
7960157 TTTTATTCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 20 0.74
16 7 0.26
ACGTcount: A:0.27, C:0.30, G:0.07, T:0.36
Consensus pattern (15 bp):
ATTCCCAGTAATCCT
Found at i:7969286 original size:22 final size:21
Alignment explanation
Indices: 7969261--7969307 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7969251 AACAACTCTA
7969261 CAACATCAATAACATCAAAATC
1 CAACATCAAT-ACATCAAAATC
* *
7969283 CAACTTCAATTCATCAAAATC
1 CAACATCAATACATCAAAATC
7969304 CAAC
1 CAAC
7969308 CTTCCCTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (21 bp):
CAACATCAATACATCAAAATC
Found at i:7972385 original size:15 final size:15
Alignment explanation
Indices: 7972345--7972394 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
7972335 AGACATTACT
*
7972345 CGCCCTACATCTGCC
1 CGCCCCACATCTGCC
* *
7972360 CGGCCCGCATCTGCC
1 CGCCCCACATCTGCC
* *
7972375 TGCCCCACATCCGCC
1 CGCCCCACATCTGCC
7972390 CGCCC
1 CGCCC
7972395 AGCTAAATAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.10, C:0.58, G:0.18, T:0.14
Consensus pattern (15 bp):
CGCCCCACATCTGCC
Found at i:7980220 original size:28 final size:29
Alignment explanation
Indices: 7980189--7980244 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
7980179 GCTTTTTTGA
7980189 GTCCCAC-TATAATTAAAAGTTA-AAAATG
1 GTCCCACAT-TAATTAAAAGTTACAAAATG
* *
7980217 GTCCCTCATTTATTAAAAGTTACAAAAT
1 GTCCCACATTAATTAAAAGTTACAAAAT
7980245 CGTATCCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (29 bp):
GTCCCACATTAATTAAAAGTTACAAAATG
Found at i:7984368 original size:22 final size:22
Alignment explanation
Indices: 7984343--7984394 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
7984333 CTTGAAATGC
*
7984343 ATGCATGGACGTAGGTTACAAT
1 ATGCATGGACGAAGGTTACAAT
* *
7984365 ATGCATGGCCGAATGTTACAAT
1 ATGCATGGACGAAGGTTACAAT
*
7984387 TTGCATGG
1 ATGCATGG
7984395 CCTCATGGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (22 bp):
ATGCATGGACGAAGGTTACAAT
Found at i:7988655 original size:9 final size:9
Alignment explanation
Indices: 7988625--7988671 Score: 60
Period size: 9 Copynumber: 5.1 Consensus size: 9
7988615 AGATAAAGAG
7988625 AATAAAATA
1 AATAAAATA
*
7988634 AA-AAGGAAAA
1 AATAA--AATA
7988644 AATAAAATA
1 AATAAAATA
7988653 AATAAAATA
1 AATAAAATA
7988662 AATAAAATA
1 AATAAAATA
7988671 A
1 A
7988672 GGAAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 2 0.06
9 24 0.73
10 5 0.15
11 2 0.06
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (9 bp):
AATAAAATA
Found at i:7988670 original size:14 final size:13
Alignment explanation
Indices: 7988605--7988671 Score: 55
Period size: 14 Copynumber: 4.8 Consensus size: 13
7988595 CAAGGTAAAG
*
7988605 AAAACAAATAAGAT
1 AAAA-AAATAAAAT
*
7988619 AAAGAGAATAAAAT
1 AAA-AAAATAAAAT
7988633 AAAAAGGAA-AAAAT
1 AAAAA--AATAAAAT
7988647 AAAATAAATAAAAT
1 AAAA-AAATAAAAT
7988661 AAATAAAATAA
1 AAA-AAAATAA
7988672 GGAAAAAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
13 3 0.07
14 36 0.82
15 5 0.11
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:7989222 original size:2 final size:2
Alignment explanation
Indices: 7989215--7989239 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7989205 TATTAAAGAA
7989215 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7989240 ATAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7989327 original size:17 final size:18
Alignment explanation
Indices: 7989294--7989329 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7989284 ATATATACGT
*
7989294 ATAATAATAACATGAATA
1 ATAAAAATAACATGAATA
7989312 ATAAAAATAA-ATGAATA
1 ATAAAAATAACATGAATA
7989329 A
1 A
7989330 AATATCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (18 bp):
ATAAAAATAACATGAATA
Found at i:7989747 original size:35 final size:35
Alignment explanation
Indices: 7989708--7989779 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
7989698 TAAAAAAATC
*
7989708 CTATTTTAGACTAGTATTTTAGTCCTAATCCAACT
1 CTATTTTAGACTAGTATTTGAGTCCTAATCCAACT
7989743 CTATTTTAGACTAGTATTTGAGTCCTAATCCAACT
1 CTATTTTAGACTAGTATTTGAGTCCTAATCCAACT
7989778 CT
1 CT
7989780 TCTTTTTTGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.42
Consensus pattern (35 bp):
CTATTTTAGACTAGTATTTGAGTCCTAATCCAACT
Found at i:7990566 original size:87 final size:87
Alignment explanation
Indices: 7990420--7990582 Score: 281
Period size: 87 Copynumber: 1.9 Consensus size: 87
7990410 TATGTTATAT
*
7990420 TATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
1 TATTTAAACGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
7990485 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* * *
7990507 TATTTAAAGGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 TATTTAAACGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
*
7990572 AGTGCTTATAT
66 AGCGCTTATAT
7990583 TGACCTATTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (87 bp):
TATTTAAACGGAAATATTATCAAGTACAATAACATATTAGGTAACGCTTATATAATGTAATAGAT
AGCGCTTATATAATAAAATAGG
Found at i:7999809 original size:21 final size:21
Alignment explanation
Indices: 7999767--7999810 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7999757 ACCCCGGGAG
* *
7999767 CTAGTTCTTCACGAGCTGCTC
1 CTAGCTCTTCACGAGCTCCTC
* *
7999788 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGAGCTCCTC
7999809 CT
1 CT
7999811 CCTCCTCCAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.39, G:0.16, T:0.36
Consensus pattern (21 bp):
CTAGCTCTTCACGAGCTCCTC
Found at i:8000438 original size:31 final size:31
Alignment explanation
Indices: 8000403--8000464 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
8000393 GAAAATTTAA
8000403 GATGTGCTATAGTAAGAGGGAGTAAGTTTTT
1 GATGTGCTATAGTAAGAGGGAGTAAGTTTTT
*
8000434 GATGTGCTATAGTAAGGGGGAGTAAGTTTTT
1 GATGTGCTATAGTAAGAGGGAGTAAGTTTTT
8000465 CAAAAATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.03, G:0.34, T:0.35
Consensus pattern (31 bp):
GATGTGCTATAGTAAGAGGGAGTAAGTTTTT
Found at i:8000488 original size:12 final size:13
Alignment explanation
Indices: 8000462--8000490 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8000452 GGAGTAAGTT
8000462 TTTCAAAAATCAA
1 TTTCAAAAATCAA
8000475 TTTCAAAAAT-AA
1 TTTCAAAAATCAA
8000487 TTTC
1 TTTC
8000491 TTAAACAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTCAAAAATCAA
Found at i:8002082 original size:120 final size:120
Alignment explanation
Indices: 8001869--8002115 Score: 431
Period size: 120 Copynumber: 2.1 Consensus size: 120
8001859 TTTTTCTTCC
* *
8001869 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCACT
*
8001934 AATAAAACCGGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
66 AATAAAACCAGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
*
8001989 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACT
1 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCACT
* * *
8002054 CATAAAACCAGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATA
66 AATAAAACCAGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
8002109 ATTCTGG
1 ATTCTGG
8002116 GTTCCGATGT
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32
Consensus pattern (120 bp):
ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCACT
AATAAAACCAGTATACTTATACCGGTTATATTACAAAATTATCTAGTACATTATA
Found at i:8002277 original size:303 final size:305
Alignment explanation
Indices: 8001700--8002298 Score: 1076
Period size: 303 Copynumber: 2.0 Consensus size: 305
8001690 TTAAAATTAG
* * *
8001700 CGACACAATATTAAAAAGTGTCGATATAGGTAGGTTGTAGACCTATTCGCTCATAAAACCGGTAT
1 CGACACAAAATTAAAAAGTGTCGA-ATA-GTAGGTTGTAGACCTATTCACTCATAAAACCAGTAT
*
8001765 ATTTATATCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATG
64 ATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATG
8001830 TCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAA
129 TCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAA
8001895 TATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGT
194 TATTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGT
8001960 TATATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTAC
259 TATATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTAC
8002007 CGACACAAAATTAAAAAGTGTCG-ATA-TAGGTTGTAGACCTATTCACTCATAAAACCAGTATAT
1 CGACACAAAATTAAAAAGTGTCGAATAGTAGGTTGTAGACCTATTCACTCATAAAACCAGTATAT
8002070 TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTC
66 TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTC
*
8002135 GACACTTTTTGACAAGGTATCGACACATTTTTCTTCTATTCTGGACATAAAGTACCGACACAATA
131 GACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATA
* * * *
8002200 TTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAATCGGTATATTTATACCGGTTA
196 TTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTA
*
8002265 TATTACAAAATTATCTATTACATTATAATTCTGG
261 TATTACAAAATTATCTAGTACATTATAATTCTGG
8002299 GTTCCAATGT
Statistics
Matches: 282, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
303 257 0.91
305 3 0.01
307 22 0.08
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (305 bp):
CGACACAAAATTAAAAAGTGTCGAATAGTAGGTTGTAGACCTATTCACTCATAAAACCAGTATAT
TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTC
GACACTTTTTGACAAGGTATCGACACATTTTTCTTCCATTCTGGACATAAAGTACCGACACAATA
TTAAAAAGTGTCGACATAGGTTGTAGACCTATTCGCTAATAAAACCGGTATACTTATACCGGTTA
TATTACAAAATTATCTAGTACATTATAATTCTGGACATAAAGTAC
Found at i:8002297 original size:183 final size:183
Alignment explanation
Indices: 8001989--8002577 Score: 993
Period size: 183 Copynumber: 3.2 Consensus size: 183
8001979 GTACATTATA
* *
8001989 ATTCTGGACATAAAGTACCGACACAAAATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
* *
8002054 CATAAAACCAGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAATCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
*
8002119 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCT
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
8002172 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
8002237 CATAAAATCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
66 CATAAAATCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
* *
8002302 CCAATGTGTAAATGTTGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
131 CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
* *
8002355 ATTTTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATTGGTTGTAGACCTATTCGCT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
* * *
8002420 CATAAAATCGGTATATTTATACCGATTGTATTACAAAATTATCTATTACATTATAATTATGGGTT
66 CATAAAATCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
* * *
8002485 CCGATGTTTTTTCAA--TCGACACTTTTTGAAAAGGTATCGACACATTTTTCTTCC
131 CCGATG---TGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
*
8002539 ATTCTAGACATAAAGTACCGACACAATATTAAAAAGTGT
1 ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGT
8002578 GAAAACTTTG
Statistics
Matches: 384, Mismatches: 19, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
183 306 0.80
184 74 0.19
186 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (183 bp):
ATTCTGGACATAAAGTACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCT
CATAAAATCGGTATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTT
CCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACACATTTTTCTTCC
Found at i:8003794 original size:3 final size:3
Alignment explanation
Indices: 8003786--8003842 Score: 87
Period size: 3 Copynumber: 19.0 Consensus size: 3
8003776 ACTTGTTTGG
* *
8003786 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC GTC ATC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
*
8003834 ATC TTC ATC
1 ATC ATC ATC
8003843 TCAACACTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.28, C:0.33, G:0.02, T:0.37
Consensus pattern (3 bp):
ATC
Found at i:8005353 original size:20 final size:19
Alignment explanation
Indices: 8005298--8005344 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
8005288 TCCAGTATCG
8005298 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
8005317 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
8005338 TTTTACC
1 TTTTACC
8005345 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:8005525 original size:20 final size:19
Alignment explanation
Indices: 8005479--8005539 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
8005469 TCCGGTAACG
8005479 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
8005498 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
*
8005519 TTTTACCTGG-TATATCATT
1 TTTTACC-GGTTTTATCATT
8005538 TT
1 TT
8005540 GGATCGATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 5 0.14
20 26 0.72
21 5 0.14
ACGTcount: A:0.20, C:0.15, G:0.11, T:0.54
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:8005569 original size:181 final size:182
Alignment explanation
Indices: 8005265--8005737 Score: 714
Period size: 181 Copynumber: 2.6 Consensus size: 182
8005255 CATACTTACG
* *
8005265 AAAGTATCGACACTTTCAATATATCCAGTATCGTTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
8005330 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
* * *
8005395 AGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AAGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
8005446 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
8005511 TATCATATTTTTACCTGGTATATCATTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
** *
8005576 AAGATTTAAAACTGATTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
131 AAGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * * ** *
8005628 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCATTTCAATACCAGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
8005693 TGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
8005738 AATTTGGATC
Statistics
Matches: 264, Mismatches: 27, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
181 166 0.63
182 98 0.37
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AAGAGCTAAAACTGATTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:8029534 original size:20 final size:21
Alignment explanation
Indices: 8029489--8029542 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
8029479 TAGGTTGGGA
*
8029489 GTATCAATACTCATTTTTTAG
1 GTATCAATACTCATTATTTAG
* *
8029510 GTATCAATACT-GTTATTTGG
1 GTATCAATACTCATTATTTAG
*
8029530 GTATCGATACTCA
1 GTATCAATACTCA
8029543 AGGGTGGAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.43
Consensus pattern (21 bp):
GTATCAATACTCATTATTTAG
Found at i:8035853 original size:20 final size:20
Alignment explanation
Indices: 8035824--8035873 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
8035814 CATCGAGTTT
* *
8035824 GAGATTGATCATTAGGGGAA
1 GAGATCGATCATTAGGGAAA
*
8035844 GAGATCGATCATTTGGGAAA
1 GAGATCGATCATTAGGGAAA
*
8035864 GTGATCGATC
1 GAGATCGATC
8035874 TATTTGAGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (20 bp):
GAGATCGATCATTAGGGAAA
Found at i:8035890 original size:21 final size:20
Alignment explanation
Indices: 8035846--8035894 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
8035836 TAGGGGAAGA
* *
8035846 GATCGATCATTTGGGAAAGT
1 GATCGATCATTTGAGAAAGG
*
8035866 GATCGATCTATTTGAGCAAGG
1 GATCGATC-ATTTGAGAAAGG
8035887 GATCGATC
1 GATCGATC
8035895 CTTTTTATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (20 bp):
GATCGATCATTTGAGAAAGG
Found at i:8044238 original size:21 final size:21
Alignment explanation
Indices: 8044213--8044259 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8044203 AATACCATGA
*
8044213 ACAGTGTACCAATGCACTGCT
1 ACAGTGCACCAATGCACTGCT
* *
8044234 ACAGTGCATCGATGCACTGCT
1 ACAGTGCACCAATGCACTGCT
8044255 ACAGT
1 ACAGT
8044260 ACTACTACAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (21 bp):
ACAGTGCACCAATGCACTGCT
Found at i:8044732 original size:46 final size:46
Alignment explanation
Indices: 8044671--8045070 Score: 621
Period size: 46 Copynumber: 8.8 Consensus size: 46
8044661 GATAAAATCT
* *
8044671 CTTACCATTT-ATCCCATAAGCTCGTAATCTTATTTTACCAAAATA
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
8044716 CTTACCATTTAATCCCAAAAGCTCGTAAGCTTATTTTACCACTATA
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
8044762 CTTACCATTTAATCACATAAGCTCGTAAGCTTATTTTA-CAAGTATA
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAA-TATA
* * *
8044808 CTTACCATTTAATCCCATAATCTTGTAAGCTTATTTTACCAATATG
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
8044854 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
8044900 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
8044946 CTTACCATTTAATCCTATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
8044992 CTTACCATTTAAT-CTATAAGCTCGCAAGCTTATTTTACAAATATA
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
** *
8045037 CTTGTCA-TT-ATTCCATAAGCTCGTAAGCTTATTT
1 CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTT
8045071 GCCAATTTAT
Statistics
Matches: 330, Mismatches: 21, Indels: 9
0.92 0.06 0.03
Matches are distributed among these distances:
43 2 0.01
44 22 0.07
45 47 0.14
46 256 0.78
47 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (46 bp):
CTTACCATTTAATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:8046977 original size:24 final size:25
Alignment explanation
Indices: 8046945--8047001 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 25
8046935 CTATGCGAAA
*
8046945 GCATCCGAGGC-CATCCGACCTAGG
1 GCATCCGAGGCGCATCCGACCGAGG
8046969 GCATCCGA-GCGCATCCGACCGAGG
1 GCATCCGAGGCGCATCCGACCGAGG
*
8046993 CCATCCGAG
1 GCATCCGAG
8047002 AGGTAGGTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 27 0.93
ACGTcount: A:0.21, C:0.39, G:0.30, T:0.11
Consensus pattern (25 bp):
GCATCCGAGGCGCATCCGACCGAGG
Found at i:8047119 original size:60 final size:60
Alignment explanation
Indices: 8047026--8047184 Score: 255
Period size: 60 Copynumber: 2.6 Consensus size: 60
8047016 GCACGCTGGG
** * *
8047026 CTAAGTAACAAATATTACTTACATCGGTAATTAGGCTTTCATGCGATTACCTAAATTTCC
1 CTAAGTAACAACGATTACCTACATCGGTAATTAGGCTTTCATGCAATTACCTAAATTTCC
* * *
8047086 CTAAGTAACAACGATTACCTACATTGGTAATTAGGTTTTCATGCAATTACCTAAATTTTC
1 CTAAGTAACAACGATTACCTACATCGGTAATTAGGCTTTCATGCAATTACCTAAATTTCC
8047146 CTAAGTAACAACGATTACCTACATCGGTAATTAGGCTTT
1 CTAAGTAACAACGATTACCTACATCGGTAATTAGGCTTT
8047185 TTAATTACGC
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 90 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (60 bp):
CTAAGTAACAACGATTACCTACATCGGTAATTAGGCTTTCATGCAATTACCTAAATTTCC
Found at i:8050157 original size:30 final size:32
Alignment explanation
Indices: 8050107--8050168 Score: 92
Period size: 30 Copynumber: 2.0 Consensus size: 32
8050097 ATTTCTTTTA
*
8050107 TTTAGTAAAAAGGTATTTTTCTTTTAATCATT
1 TTTAGTAAAAAGGTATTTTTCATTTAATCATT
*
8050139 TTTAGTAAAGA-G-ATTTTTCATTTAATCATT
1 TTTAGTAAAAAGGTATTTTTCATTTAATCATT
8050169 CTATGCCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 17 0.61
31 1 0.04
32 10 0.36
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (32 bp):
TTTAGTAAAAAGGTATTTTTCATTTAATCATT
Found at i:8055316 original size:2 final size:2
Alignment explanation
Indices: 8055309--8055345 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8055299 TAATTTACTA
8055309 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8055346 ATTCTGACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8056785 original size:3 final size:3
Alignment explanation
Indices: 8056777--8056881 Score: 138
Period size: 3 Copynumber: 35.0 Consensus size: 3
8056767 ATTGATTTAT
* * *
8056777 TTA TTA TTA TTA TTA TAA TTA TAA TTA TTA TTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
8056825 CTA TAA ATA TTA TTA TTA TTA TTA TTA TTA TAA ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8056873 TTA TTA TTA
1 TTA TTA TTA
8056882 AATATATATA
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 86 1.00
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:8056888 original size:27 final size:28
Alignment explanation
Indices: 8056777--8056888 Score: 158
Period size: 27 Copynumber: 4.0 Consensus size: 28
8056767 ATTGATTTAT
8056777 TTATTATTATTATTATAATTATAAT-TA
1 TTATTATTATTATTATAATTATAATATA
*
8056804 TTATTATTATTATTATAATTACTATAAATA
1 TTATTATTATTATTATAATTA-TA-ATATA
*
8056834 TTATTATTATTATTATTATTATAA-ATA
1 TTATTATTATTATTATAATTATAATATA
*
8056861 TTATTATTATTATTATTATTA-AATATA
1 TTATTATTATTATTATAATTATAATATA
8056888 T
1 T
8056889 ATATATATAC
Statistics
Matches: 79, Mismatches: 2, Indels: 8
0.89 0.02 0.09
Matches are distributed among these distances:
26 2 0.03
27 49 0.62
28 3 0.04
29 3 0.04
30 22 0.28
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (28 bp):
TTATTATTATTATTATAATTATAATATA
Found at i:8057016 original size:16 final size:16
Alignment explanation
Indices: 8056997--8057034 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
8056987 TAACCCTAGT
8056997 CGCCTCTGCCTCCAGC
1 CGCCTCTGCCTCCAGC
8057013 CGCCTCTGCCTCCAGC
1 CGCCTCTGCCTCCAGC
8057029 CGCCTC
1 CGCCTC
8057035 AGCCAACGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.05, C:0.58, G:0.18, T:0.18
Consensus pattern (16 bp):
CGCCTCTGCCTCCAGC
Found at i:8069642 original size:9 final size:9
Alignment explanation
Indices: 8069618--8069659 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
8069608 TATGCTTGAA
8069618 AAAAAAGAAG
1 AAAAAA-AAG
*
8069628 AGAAAAAAG
1 AAAAAAAAG
8069637 -AAAAAAAG
1 AAAAAAAAG
*
8069645 AGAAAAAAG
1 AAAAAAAAG
8069654 AAAAAA
1 AAAAAA
8069660 GGGGGGTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 7 0.26
9 15 0.56
10 5 0.19
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:8069645 original size:17 final size:17
Alignment explanation
Indices: 8069619--8069659 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
8069609 ATGCTTGAAA
8069619 AAAAAGAAGAGAAAAAAG
1 AAAAA-AAGAGAAAAAAG
8069637 AAAAAAAGAGAAAAAAG
1 AAAAAAAGAGAAAAAAG
8069654 AAAAAA
1 AAAAAA
8069660 GGGGGGTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAGAGAAAAAAG
Found at i:8070948 original size:83 final size:83
Alignment explanation
Indices: 8070809--8071440 Score: 1140
Period size: 83 Copynumber: 7.6 Consensus size: 83
8070799 AAATGCAATG
8070809 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
8070874 GAATTTAGAAGATGAATT
66 GAATTTAGAAGATGAATT
*
8070892 TGCTCATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
8070957 GAATTTAGAAGATGAATT
66 GAATTTAGAAGATGAATT
*
8070975 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAGAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
* *
8071040 GAATTTGGAAGATGAATG
66 GAATTTAGAAGATGAATT
8071058 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
8071123 GAATTTAGAAGATGAATT
66 GAATTTAGAAGATGAATT
*
8071141 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTGTCTGATCTGGTTTGGCAGAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
* *
8071206 GAATTTGGAAGATGAATG
66 GAATTTAGAAGATGAATT
8071224 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
8071289 GAATTTAGAAGATGAATT
66 GAATTTAGAAGATGAATT
* *
8071307 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGCAAAACCAATCATT
1 TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
* *
8071372 GGATTTAAAAGATGAATT
66 GAATTTAGAAGATGAATT
*
8071390 TGC-CAATAGCATCTTCTGGAAGTGATCTTTGAGTTATCTGATCTGGTTTGG
1 TGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG
8071441 TAGGAACTAC
Statistics
Matches: 528, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
82 1 0.00
83 527 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.37
Consensus pattern (83 bp):
TGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCAGAACCAATCATT
GAATTTAGAAGATGAATT
Found at i:8072363 original size:113 final size:113
Alignment explanation
Indices: 8072165--8072615 Score: 701
Period size: 113 Copynumber: 4.0 Consensus size: 113
8072155 TAGCAAAGAT
* * *
8072165 TCAAATCTATCATTTGATGGATTGACA-TTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTG
1 TCAAATCCATCATTTGATGGA-TCATATTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTG
* *
8072229 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGC
65 AAGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACCTTTTGC
8072278 TCAAATCCATCATTTGATGGATCATATTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGA
1 TCAAATCCATCATTTGATGGATCATATTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGA
*
8072343 AGAAGGAAGAAGAAGTTCATAATAAGAAGAATTTGTTCAACCTTTTGC
66 AGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACCTTTTGC
* *
8072391 TCAAATCCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATTTGATGGATCATATTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGA
* * *
8072456 AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTAC
66 AGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACCTTTTGC
* * * * * *
8072504 -CTGAATTCATCAATTGATGGATTATCTTTTCCAGAG-AAGTTCATAATGAGAAGAACTCATCTG
1 TC-AAATCCATCATTTGATGGATCATATTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTG
*
8072567 AAGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACTTTTTGC
65 AAGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACCTTTTGC
8072616 ATAATTCTAT
Statistics
Matches: 318, Mismatches: 18, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
112 76 0.24
113 242 0.76
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (113 bp):
TCAAATCCATCATTTGATGGATCATATTTTCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGA
AGAAGGAAGAAGAAGTTCATAATAAGAAGAACTTGTTCAACCTTTTGC
Found at i:8072944 original size:3 final size:3
Alignment explanation
Indices: 8072938--8073033 Score: 63
Period size: 3 Copynumber: 32.0 Consensus size: 3
8072928 CCATATTGAT
* * * *
8072938 TTA TTA TTTA TTTA TAA TTA -TA ATA TTA TTA TTA TTA TTA GTA TAA
1 TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * *
8072984 TTA CTA -TA AAA TT- TTA TTA TTA TTA TAA ATA TTA TTA TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
8073028 TTA TTA
1 TTA TTA
8073034 AATATATATA
Statistics
Matches: 73, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
2 6 0.08
3 57 0.78
4 10 0.14
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:8073168 original size:15 final size:16
Alignment explanation
Indices: 8073145--8073184 Score: 73
Period size: 15 Copynumber: 2.6 Consensus size: 16
8073135 CTCTAACCCT
8073145 AGCCGCCTCTGCCTCC
1 AGCCGCCTCTGCCTCC
8073161 AG-CGCCTCTGCCTCC
1 AGCCGCCTCTGCCTCC
8073176 AGCCGCCTC
1 AGCCGCCTC
8073185 AGCCAACGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.07, C:0.55, G:0.20, T:0.17
Consensus pattern (16 bp):
AGCCGCCTCTGCCTCC
Found at i:8074993 original size:10 final size:11
Alignment explanation
Indices: 8074970--8074995 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8074960 ATCCATGACT
8074970 AAAAGTGAGAA
1 AAAAGTGAGAA
8074981 AAAAGTGAGAA
1 AAAAGTGAGAA
8074992 AAAA
1 AAAA
8074996 CTTGAAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (11 bp):
AAAAGTGAGAA
Found at i:8075809 original size:31 final size:31
Alignment explanation
Indices: 8075734--8075810 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
8075724 TTTTTTTTTG
*
8075734 TCATGTTCGTTCAATAAGGAATATAACTTGT
1 TCATGTTCGTTCATTAAGGAATATAACTTGT
*
8075765 TCATGTTCGTTCATTAAGGAATATAGCTTGT
1 TCATGTTCGTTCATTAAGGAATATAACTTGT
8075796 TCATGTTCGTTCATT
1 TCATGTTCGTTCATT
8075811 TAAATGATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (31 bp):
TCATGTTCGTTCATTAAGGAATATAACTTGT
Found at i:8075853 original size:27 final size:26
Alignment explanation
Indices: 8075817--8075867 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
8075807 CATTTAAATG
8075817 ATAAACGAACACAAACGAACGAACATA
1 ATAAACGAACACAAACGAAC-AACATA
* * *
8075844 ATAAATGAACATAAGCGAACAACA
1 ATAAACGAACACAAACGAACAACA
8075868 CAAACACAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.59, C:0.20, G:0.12, T:0.10
Consensus pattern (26 bp):
ATAAACGAACACAAACGAACAACATA
Found at i:8076169 original size:14 final size:14
Alignment explanation
Indices: 8076127--8076169 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
8076117 GCCATCTGTT
*
8076127 CGAACATAAATAAA
1 CGAACATAAATGAA
*
8076141 CAAACATAAATGAA
1 CGAACATAAATGAA
*
8076155 CGAACATAAACGAA
1 CGAACATAAATGAA
8076169 C
1 C
8076170 ATATAATCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.60, C:0.19, G:0.09, T:0.12
Consensus pattern (14 bp):
CGAACATAAATGAA
Found at i:8076934 original size:2 final size:2
Alignment explanation
Indices: 8076929--8076960 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8076919 TATGTTGTTA
8076929 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8076961 CCTTAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8077684 original size:17 final size:17
Alignment explanation
Indices: 8077662--8077694 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8077652 TACTGCCACA
*
8077662 ATATTATTTTTTATATT
1 ATATTATATTTTATATT
8077679 ATATTATATTTTATAT
1 ATATTATATTTTATAT
8077695 AAATAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATTATATTTTATATT
Found at i:8078837 original size:14 final size:13
Alignment explanation
Indices: 8078788--8078838 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
8078778 ATCTATACTC
8078788 ATTTTTTA-ATAA
1 ATTTTTTATATAA
* **
8078800 ATTTTTTAAATGC
1 ATTTTTTATATAA
8078813 ATTTTTATATATAA
1 ATTTTT-TATATAA
8078827 ATGTTTTTATAT
1 AT-TTTTTATAT
8078839 GTAGCAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 8 0.26
13 8 0.26
14 11 0.35
15 4 0.13
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (13 bp):
ATTTTTTATATAA
Found at i:8081332 original size:23 final size:23
Alignment explanation
Indices: 8081280--8081332 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
8081270 AGTAATAATA
8081280 TATATTTTTAATTTTTGAATGAT
1 TATATTTTTAATTTTTGAATGAT
* * *
8081303 T-TAATTTTTATTTTTTGTATTAT
1 TAT-ATTTTTAATTTTTGAATGAT
8081326 TATATTT
1 TATATTT
8081333 AATCTTTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (23 bp):
TATATTTTTAATTTTTGAATGAT
Found at i:8081568 original size:198 final size:196
Alignment explanation
Indices: 8081224--8081619 Score: 686
Period size: 198 Copynumber: 2.0 Consensus size: 196
8081214 GAATAACAAA
*
8081224 TTTAGATTTATATAAATAAAAGTCAAGTTAGAATTCGATGTAAAAAAGTAATAATATATATTTTT
1 TTTAGATTTATATAAATAAAAGTCAAGTTAGAATTCGACGTAAAAAAGTAATAATATATATTTTT
* * *
8081289 AATTTTTGAATGATTTAATTTTTATTTTTTGTATTATTATATTTAATCTTTTCAATTTTTTTATA
66 AAATTTTGAATGATTTAATTTTTATTTTTTGTATTATTATATTTAAGCTTTTCAATATTTTTATA
* *
8081354 TTTTGAATTTAAAATATTTTTATTTTTTTAAAAATTAAATTAACCCTTAAACTTTAAAAAAGATC
131 TTTTGAATTCAAAATATTTTTA-TTTTTTAAAAATTAAATAAACCCTTAAACTTT-AAAAAGATC
8081419 AAT
194 AAT
8081422 TTTAGATTTATATAAATAAAAGTCAAGTTAGAATTCGACGTAAAAAAGTAATAATATATA-TTTT
1 TTTAGATTTATATAAATAAAAGTCAAGTTAGAATTCGACGTAAAAAAGTAATAATATATATTTTT
8081486 AAATTTTGAATGATTTAATTTTTTATTTTTTGTATTATTATATTTAAGCTTTTCAATATTTTTAT
66 AAATTTTGAATGATTTAA-TTTTTATTTTTTGTATTATTATATTTAAGCTTTTCAATATTTTTAT
* *
8081551 ATTTTGAATTCAAAATATTTTTATTTTTTAAAAATTAAATAAACCCTTAAACTTTGAAAATATCA
130 ATTTTGAATTCAAAATATTTTTATTTTTTAAAAATTAAATAAACCCTTAAACTTTAAAAAGATCA
8081616 AT
195 AT
8081618 TT
1 TT
8081620 GGTCTTCGAA
Statistics
Matches: 189, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
196 12 0.06
197 52 0.28
198 125 0.66
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (196 bp):
TTTAGATTTATATAAATAAAAGTCAAGTTAGAATTCGACGTAAAAAAGTAATAATATATATTTTT
AAATTTTGAATGATTTAATTTTTATTTTTTGTATTATTATATTTAAGCTTTTCAATATTTTTATA
TTTTGAATTCAAAATATTTTTATTTTTTAAAAATTAAATAAACCCTTAAACTTTAAAAAGATCAA
T
Found at i:8081710 original size:21 final size:21
Alignment explanation
Indices: 8081686--8081726 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8081676 TAACGATCAT
*
8081686 TGTGGACTACCATATCAACAC
1 TGTGGACTACCACATCAACAC
* *
8081707 TGTGGATTGCCACATCAACA
1 TGTGGACTACCACATCAACA
8081727 TCGTAACGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (21 bp):
TGTGGACTACCACATCAACAC
Found at i:8083151 original size:21 final size:21
Alignment explanation
Indices: 8083127--8083187 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
8083117 AATACCATGG
8083127 ATTGTCATGTCAACACAATGA
1 ATTGTCATGTCAACACAATGA
* * * **
8083148 ATTGTCACGTTAGCACTGTGA
1 ATTGTCATGTCAACACAATGA
* *
8083169 ACTGTCATATCAACACAAT
1 ATTGTCATGTCAACACAAT
8083188 AACGGTCATC
Statistics
Matches: 28, Mismatches: 12, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (21 bp):
ATTGTCATGTCAACACAATGA
Found at i:8083718 original size:2 final size:2
Alignment explanation
Indices: 8083711--8083758 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
8083701 AACAACACCC
8083711 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8083753 AT AT AT
1 AT AT AT
8083759 TTTTTTCATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8085824 original size:50 final size:51
Alignment explanation
Indices: 8085765--8085865 Score: 177
Period size: 50 Copynumber: 2.0 Consensus size: 51
8085755 TAGAAAAAAT
*
8085765 GGCCTATTTCGAATATACAGTAAGTAAAAGGTCTCTTGTATTAAAGTCAAA
1 GGCCTATTTCGAATATACAGTAAGTAAAAGGTCTATTGTATTAAAGTCAAA
*
8085816 GGCC-ATTTCGAATATACAGTATGTAAAAGGTCTATTGTATTAAAGTCAAA
1 GGCCTATTTCGAATATACAGTAAGTAAAAGGTCTATTGTATTAAAGTCAAA
8085866 AGAAAAGAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 44 0.92
51 4 0.08
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.32
Consensus pattern (51 bp):
GGCCTATTTCGAATATACAGTAAGTAAAAGGTCTATTGTATTAAAGTCAAA
Found at i:8085988 original size:11 final size:11
Alignment explanation
Indices: 8085962--8086011 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
8085952 AAATAGTTGG
*
8085962 ATAAATAAATAT
1 ATAAA-AAATAA
8085974 ATAAAAAATAA
1 ATAAAAAATAA
*
8085985 ATAAAAAACAA
1 ATAAAAAATAA
8085996 A-AAAACAAT-A
1 ATAAAA-AATAA
8086006 ATAAAA
1 ATAAAA
8086012 GACTAATCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
10 6 0.18
11 22 0.67
12 5 0.15
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (11 bp):
ATAAAAAATAA
Found at i:8086154 original size:20 final size:20
Alignment explanation
Indices: 8086126--8086191 Score: 80
Period size: 20 Copynumber: 3.2 Consensus size: 20
8086116 ATGGAATTTA
* *
8086126 AAAACAGAAATAAAAGAAAT
1 AAAATAGAAATAAAAAAAAT
8086146 AAAATAGAAAATAAAATAAAAT
1 AAAATAG-AAATAAAA-AAAAT
8086168 AAAATA-AAATAAAAAAGAAT
1 AAAATAGAAATAAAAAA-AAT
8086188 AAAA
1 AAAA
8086192 GTAATAATAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
19 2 0.05
20 21 0.51
21 8 0.20
22 10 0.24
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.14
Consensus pattern (20 bp):
AAAATAGAAATAAAAAAAAT
Found at i:8086161 original size:5 final size:5
Alignment explanation
Indices: 8086133--8086191 Score: 68
Period size: 5 Copynumber: 11.6 Consensus size: 5
8086123 TTAAAAACAG
*
8086133 AAATA AAA-G AAATA AAATAGA AAATA AAATA AAATA AAATA AAATA AAA-A
1 AAATA AAATA AAATA AAAT--A AAATA AAATA AAATA AAATA AAATA AAATA
8086183 AGAATA AAA
1 A-AATA AAA
8086192 GTAATAATAC
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
4 5 0.11
5 35 0.74
6 2 0.04
7 5 0.11
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.15
Consensus pattern (5 bp):
AAATA
Found at i:8087555 original size:9 final size:9
Alignment explanation
Indices: 8087541--8087587 Score: 53
Period size: 9 Copynumber: 5.3 Consensus size: 9
8087531 AACATTATTA
8087541 ATAAATAAT
1 ATAAATAAT
*
8087550 ATAAATAAA
1 ATAAATAAT
8087559 ATAAATAA-
1 ATAAATAAT
8087567 ATAAAT-AT
1 ATAAATAAT
*
8087575 AATATATAAT
1 -ATAAATAAT
8087585 ATA
1 ATA
8087588 CGTATATGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
7 1 0.03
8 6 0.18
9 24 0.73
10 2 0.06
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATAAATAAT
Found at i:8087557 original size:4 final size:4
Alignment explanation
Indices: 8087540--8087583 Score: 52
Period size: 4 Copynumber: 10.2 Consensus size: 4
8087530 CAACATTATT
*
8087540 AATA AATA ATATA AATAA AATA AATA AATA AATA TAATA TATA A
1 AATA AATA A-ATA AAT-A AATA AATA AATA AATA -AATA AATA A
8087584 TATACGTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 23 0.66
5 12 0.34
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (4 bp):
AATA
Found at i:8087558 original size:13 final size:12
Alignment explanation
Indices: 8087540--8087583 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
8087530 CAACATTATT
8087540 AATAAATAATATA
1 AATAAATAA-ATA
8087553 AATAAAATAAATA
1 AAT-AAATAAATA
8087566 AATAAATATAATA
1 AATAAATA-AATA
*
8087579 TATAA
1 AATAA
8087584 TATACGTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 5 0.18
13 17 0.61
14 6 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AATAAATAAATA
Found at i:8091376 original size:30 final size:30
Alignment explanation
Indices: 8091342--8091407 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
8091332 GATAAAGTAT
8091342 AAAGTTTAGGGATCAAAAAG-GTAATTTTCA
1 AAAGTTTAGGGA-CAAAAAGTGTAATTTTCA
* *
8091372 AAAGTTTAGGGACCAAAAGTTTAATTTTCA
1 AAAGTTTAGGGACAAAAAGTGTAATTTTCA
8091402 AAAGTT
1 AAAGTT
8091408 ATGTATTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 6 0.18
30 27 0.82
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.32
Consensus pattern (30 bp):
AAAGTTTAGGGACAAAAAGTGTAATTTTCA
Found at i:8092713 original size:30 final size:30
Alignment explanation
Indices: 8092677--8092747 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
8092667 GTATAAACAG
8092677 AATAATTTTTAAGCTTGTATATTAATACAA
1 AATAATTTTTAAGCTTGTATATTAATACAA
8092707 AATAATTTTTAAGCTTGTATATTAATACAA
1 AATAATTTTTAAGCTTGTATATTAATACAA
*
8092737 AATAATATTTA
1 AATAATTTTTA
8092748 TTTCAAGGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (30 bp):
AATAATTTTTAAGCTTGTATATTAATACAA
Found at i:8093059 original size:22 final size:22
Alignment explanation
Indices: 8093034--8093076 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8093024 ACTGATTATT
*
8093034 ATATATGATGTTTATCATGAAA
1 ATATATGATGTTTACCATGAAA
8093056 ATATATGATGTTTACCATGAA
1 ATATATGATGTTTACCATGAA
8093077 TGTTATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (22 bp):
ATATATGATGTTTACCATGAAA
Found at i:8097042 original size:3 final size:3
Alignment explanation
Indices: 8097034--8097092 Score: 97
Period size: 3 Copynumber: 20.7 Consensus size: 3
8097024 GCTCGGACTG
8097034 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8097081 TT- TTA -TA TTA TT
1 TTA TTA TTA TTA TT
8097093 TTGTTTTTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 6 0.11
3 47 0.89
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8100432 original size:3 final size:3
Alignment explanation
Indices: 8100424--8100458 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8100414 AATGGTATGA
8100424 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8100459 CATAACTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8117005 original size:22 final size:22
Alignment explanation
Indices: 8116964--8117005 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8116954 TGGTTATTAA
*
8116964 ATATGATGTTTATCATGAATAT
1 ATATGATGTTTATCACGAATAT
*
8116986 ATATGATGTTTATTACGAAT
1 ATATGATGTTTATCACGAAT
8117006 GTTATTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (22 bp):
ATATGATGTTTATCACGAATAT
Found at i:8117230 original size:59 final size:59
Alignment explanation
Indices: 8117167--8117310 Score: 270
Period size: 59 Copynumber: 2.4 Consensus size: 59
8117157 CATTTTTTAT
8117167 ATGGTGGGCACGACCTTATGTGTCATATATGTGTTAGTACTAAAGGATAACTAGTACAG
1 ATGGTGGGCACGACCTTATGTGTCATATATGTGTTAGTACTAAAGGATAACTAGTACAG
8117226 ATGGTGGGCACGACCTTATGTGTCATATATGTGTTAGTACTAAAGGATAACTAGTACAG
1 ATGGTGGGCACGACCTTATGTGTCATATATGTGTTAGTACTAAAGGATAACTAGTACAG
* *
8117285 ATGGTGGGCACAACCTTATATGTCAT
1 ATGGTGGGCACGACCTTATGTGTCAT
8117311 TTCGGTTTAG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 83 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (59 bp):
ATGGTGGGCACGACCTTATGTGTCATATATGTGTTAGTACTAAAGGATAACTAGTACAG
Found at i:8118957 original size:26 final size:26
Alignment explanation
Indices: 8118940--8118990 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
8118930 ACTAAAATGT
*
8118940 CATTTCCTAAAAAATTACGAAAATAA
1 CATTTCCTAAAAAATTACAAAAATAA
**
8118966 CATTTTTTAAAAAATTACAAAAATA
1 CATTTCCTAAAAAATTACAAAAATA
8118991 GCACCCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (26 bp):
CATTTCCTAAAAAATTACAAAAATAA
Found at i:8119024 original size:29 final size:29
Alignment explanation
Indices: 8118998--8119053 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
8118988 ATAGCACCCT
* * *
8118998 TTTCAAATTAATTCCCAATATGTCACCAG
1 TTTCAAAATAATTACCAAAATGTCACCAG
*
8119027 TTTCAAAATAATTACTAAAATGTCACC
1 TTTCAAAATAATTACCAAAATGTCACC
8119054 TGATCAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.34
Consensus pattern (29 bp):
TTTCAAAATAATTACCAAAATGTCACCAG
Found at i:8119124 original size:21 final size:21
Alignment explanation
Indices: 8119072--8119124 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
8119062 GGGTCGGAAC
*
8119072 CGGTCAAACCCTTTGAAAAAA
1 CGGTCAAACCGTTTGAAAAAA
8119093 CGGTCAAACCGTTTG-AAAAA
1 CGGTCAAACCGTTTGAAAAAA
8119113 CAGGTCAAACCG
1 C-GGTCAAACCG
8119125 GTCATATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 6 0.20
21 24 0.80
ACGTcount: A:0.40, C:0.25, G:0.19, T:0.17
Consensus pattern (21 bp):
CGGTCAAACCGTTTGAAAAAA
Found at i:8123845 original size:45 final size:45
Alignment explanation
Indices: 8123791--8123877 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
8123781 CATAAGTGAC
*
8123791 ATAGTACAACAAATGTACTACTACCATATTTGCATACATAGTGCA
1 ATAGTACAACAAATGTACTACTACCATATTTGCACACATAGTGCA
* *
8123836 ATAGTACAACAAATGTACTGCTACCATCTTTGCACACATAGT
1 ATAGTACAACAAATGTACTACTACCATATTTGCACACATAGT
8123878 TCCCTTTATC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (45 bp):
ATAGTACAACAAATGTACTACTACCATATTTGCACACATAGTGCA
Found at i:8127985 original size:30 final size:30
Alignment explanation
Indices: 8127946--8128009 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
8127936 AATACATAAT
*
8127946 TTTTTAAAATCAC-ACATTTGGTCCCTAAAC
1 TTTTGAAAATCACTA-ATTTGGTCCCTAAAC
* * *
8127976 TTTTGAAAATTACTATTTTGGTCCTTAAAC
1 TTTTGAAAATCACTAATTTGGTCCCTAAAC
8128006 TTTT
1 TTTT
8128010 ACCAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.08, T:0.45
Consensus pattern (30 bp):
TTTTGAAAATCACTAATTTGGTCCCTAAAC
Found at i:8137847 original size:14 final size:14
Alignment explanation
Indices: 8137828--8137858 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8137818 AATGCATCGA
*
8137828 TTTTGGTGGTTTGG
1 TTTTGGTGGCTTGG
8137842 TTTTGGTGGCTTGG
1 TTTTGGTGGCTTGG
8137856 TTT
1 TTT
8137859 GACTTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.03, G:0.39, T:0.58
Consensus pattern (14 bp):
TTTTGGTGGCTTGG
Found at i:8149677 original size:13 final size:13
Alignment explanation
Indices: 8149659--8149736 Score: 57
Period size: 13 Copynumber: 5.3 Consensus size: 13
8149649 GCTGGTCAAC
8149659 GGTCAACGGGTCG
1 GGTCAACGGGTCG
8149672 GGTCAACAGATCGGGTCG
1 GGT---CA-A-CGGGTCG
*
8149690 GGTCAATGGGTCG
1 GGTCAACGGGTCG
8149703 GGTCAACGGGTTGGTCG
1 GGTCAAC--G--GGTCG
*
8149720 GGTAAACGGGTCG
1 GGTCAACGGGTCG
8149733 GGTC
1 GGTC
8149737 GGGTTAACAG
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
13 23 0.44
14 1 0.02
15 4 0.08
16 2 0.04
17 12 0.23
18 10 0.19
ACGTcount: A:0.17, C:0.19, G:0.45, T:0.19
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:8149688 original size:18 final size:18
Alignment explanation
Indices: 8149665--8149758 Score: 92
Period size: 18 Copynumber: 5.6 Consensus size: 18
8149655 CAACGGTCAA
*
8149665 CGGGTCGGGTCAACAGAT
1 CGGGTCGGGTCAACAGGT
8149683 CGGGTCGGGTC-A-A--T
1 CGGGTCGGGTCAACAGGT
*
8149697 -GGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACAGGT
* * *
8149714 -TGGTCGGGTAAACGGGT
1 CGGGTCGGGTCAACAGGT
*
8149731 CGGGTCGGGTTAACAGGT
1 CGGGTCGGGTCAACAGGT
8149749 CGGGTCGGGT
1 CGGGTCGGGT
8149759 TATGACCGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
13 10 0.15
14 2 0.03
16 1 0.02
17 17 0.26
18 35 0.54
ACGTcount: A:0.15, C:0.18, G:0.47, T:0.20
Consensus pattern (18 bp):
CGGGTCGGGTCAACAGGT
Found at i:8149701 original size:31 final size:30
Alignment explanation
Indices: 8149659--8149736 Score: 102
Period size: 31 Copynumber: 2.6 Consensus size: 30
8149649 GCTGGTCAAC
8149659 GGTCAACGGGTCGGGTCAACAGATCGGGTCG
1 GGTCAACGGGTCGGGTCAACAGAT-GGGTCG
* * * *
8149690 GGTCAATGGGTCGGGTCAACGGGTTGGTCG
1 GGTCAACGGGTCGGGTCAACAGATGGGTCG
*
8149720 GGTAAACGGGTCGGGTC
1 GGTCAACGGGTCGGGTC
8149737 GGGTTAACAG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 20 0.49
31 21 0.51
ACGTcount: A:0.17, C:0.19, G:0.45, T:0.19
Consensus pattern (30 bp):
GGTCAACGGGTCGGGTCAACAGATGGGTCG
Found at i:8152309 original size:17 final size:17
Alignment explanation
Indices: 8152284--8152317 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8152274 TCAAAGACAA
8152284 GACAATTACAACTGAGT
1 GACAATTACAACTGAGT
*
8152301 GACAGTTACAACTGAGT
1 GACAATTACAACTGAGT
8152318 TAGTTTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (17 bp):
GACAATTACAACTGAGT
Found at i:8157634 original size:29 final size:29
Alignment explanation
Indices: 8157548--8157637 Score: 108
Period size: 30 Copynumber: 3.0 Consensus size: 29
8157538 CAAAATATGT
* *
8157548 AACTTTTAAAAATTATATTTTTGGTCCCTA
1 AACTTTTAAAATTTATA-TTTTGGTCACTA
* * **
8157578 AACTTTTCCAAATTTATACTTTAATCACTA
1 AACTTTT-AAAATTTATATTTTGGTCACTA
8157608 AACTTTTAAAATTTATATTTTGGTCACTA
1 AACTTTTAAAATTTATATTTTGGTCACTA
8157637 A
1 A
8157638 TCAAATTTGG
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 19 0.39
30 22 0.45
31 8 0.16
ACGTcount: A:0.36, C:0.14, G:0.04, T:0.46
Consensus pattern (29 bp):
AACTTTTAAAATTTATATTTTGGTCACTA
Found at i:8162547 original size:31 final size:30
Alignment explanation
Indices: 8162505--8162564 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
8162495 CGGTCAACGA
*
8162505 TCAACGGGTCGGGTCAACAGATCGGGTCGGG
1 TCAACGGGTCGGATCAACAGATC-GGTCGGG
* *
8162536 TCAATGGGTCGGATCAACAGGTCGGTCGG
1 TCAACGGGTCGGATCAACAGATCGGTCGG
8162565 TGTGACCGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.20, C:0.22, G:0.40, T:0.18
Consensus pattern (30 bp):
TCAACGGGTCGGATCAACAGATCGGTCGGG
Found at i:8167487 original size:18 final size:18
Alignment explanation
Indices: 8167464--8167554 Score: 68
Period size: 18 Copynumber: 5.4 Consensus size: 18
8167454 CGGTCAACGA
8167464 GTCGGGTCAACAGATCGG
1 GTCGGGTCAACAGATCGG
8167482 GTCGGGT---CA-AT-GG
1 GTCGGGTCAACAGATCGG
* * *
8167495 GTCGGGTCAACGGTTC-C
1 GTCGGGTCAACAGATCGG
* * * *
8167512 GTCGGTTAAACGGGTCGG
1 GTCGGGTCAACAGATCGG
*
8167530 GTCGGGTCAACAGGTCGG
1 GTCGGGTCAACAGATCGG
8167548 GTCGGGT
1 GTCGGGT
8167555 TGTGACCGGT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
13 9 0.16
14 2 0.04
15 2 0.04
16 1 0.02
17 14 0.25
18 29 0.51
ACGTcount: A:0.15, C:0.21, G:0.43, T:0.21
Consensus pattern (18 bp):
GTCGGGTCAACAGATCGG
Found at i:8167496 original size:13 final size:13
Alignment explanation
Indices: 8167480--8167504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8167470 TCAACAGATC
8167480 GGGTCGGGTCAAT
1 GGGTCGGGTCAAT
8167493 GGGTCGGGTCAA
1 GGGTCGGGTCAA
8167505 CGGTTCCGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.48, T:0.20
Consensus pattern (13 bp):
GGGTCGGGTCAAT
Found at i:8168963 original size:21 final size:21
Alignment explanation
Indices: 8168939--8169002 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
8168929 TTAAAATACC
8168939 TATTTTAAAT-TTTAAAAATTA
1 TATTTT-AATCTTTAAAAATTA
* *
8168960 TATTTTATTCTTTAAAAAATA
1 TATTTTAATCTTTAAAAATTA
* *
8168981 TATTTT-ATCTATAAATATTA
1 TATTTTAATCTTTAAAAATTA
8169001 TA
1 TA
8169003 ACTTTAAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 14 0.39
21 22 0.61
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTTTAATCTTTAAAAATTA
Found at i:8169002 original size:20 final size:21
Alignment explanation
Indices: 8168951--8169002 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8168941 TTTTAAATTT
*
8168951 TAAAAATTATATTTTATTCTT
1 TAAAAATTATATTTTATTCTA
*
8168972 TAAAAAATATATTTTA-TCTA
1 TAAAAATTATATTTTATTCTA
*
8168992 TAAATATTATA
1 TAAAAATTATA
8169003 ACTTTAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (21 bp):
TAAAAATTATATTTTATTCTA
Found at i:8169599 original size:23 final size:23
Alignment explanation
Indices: 8169566--8169637 Score: 87
Period size: 23 Copynumber: 3.3 Consensus size: 23
8169556 ATTTAACTGA
* * *
8169566 ATGGCATATTTTTATCTGTTTTT
1 ATGGCACATTTTTATATGCTTTT
8169589 ATGGCACATTTTTATATGCTTTT
1 ATGGCACATTTTTATATGCTTTT
*
8169612 AT-G-ACATTTTTTTATGCTTTT
1 ATGGCACATTTTTATATGCTTTT
8169633 -TGGCA
1 ATGGCA
8169638 TTTTTTTGGT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
20 1 0.02
21 18 0.42
22 2 0.05
23 22 0.51
ACGTcount: A:0.19, C:0.11, G:0.14, T:0.56
Consensus pattern (23 bp):
ATGGCACATTTTTATATGCTTTT
Found at i:8169620 original size:21 final size:21
Alignment explanation
Indices: 8169573--8169642 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
8169563 TGAATGGCAT
* *
8169573 ATTTTTATCTGTTTTTATGGCAC
1 ATTTTTATATGCTTTTAT-G-AC
8169596 ATTTTTATATGCTTTTATGAC
1 ATTTTTATATGCTTTTATGAC
* *
8169617 ATTTTTTTATGCTTTT-TGGC
1 ATTTTTATATGCTTTTATGAC
8169637 ATTTTT
1 ATTTTT
8169643 TTGGTTGTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
20 9 0.21
21 17 0.40
22 1 0.02
23 16 0.37
ACGTcount: A:0.17, C:0.10, G:0.11, T:0.61
Consensus pattern (21 bp):
ATTTTTATATGCTTTTATGAC
Found at i:8170376 original size:2 final size:2
Alignment explanation
Indices: 8170369--8170395 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8170359 TAAAATTTAT
8170369 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8170396 TTGAAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8170839 original size:18 final size:19
Alignment explanation
Indices: 8170798--8170840 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8170788 TGTTAAAATA
8170798 GTTTAGGGTTTTTAAAGTG
1 GTTTAGGGTTTTTAAAGTG
* *
8170817 ATTTAGGGTTTTTTAA-TG
1 GTTTAGGGTTTTTAAAGTG
8170835 GTTTAG
1 GTTTAG
8170841 AGTTAGATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (19 bp):
GTTTAGGGTTTTTAAAGTG
Found at i:8173888 original size:24 final size:24
Alignment explanation
Indices: 8173844--8173889 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8173834 GGCATTTTGT
** *
8173844 GAGATTGAGAGTTTTAGAGTTTCA
1 GAGATTGAGAGTTAGAAAGTTTCA
8173868 GAGATTGAGAGTTAGAAAGTTT
1 GAGATTGAGAGTTAGAAAGTTT
8173890 GAGAATTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (24 bp):
GAGATTGAGAGTTAGAAAGTTTCA
Found at i:8174896 original size:19 final size:19
Alignment explanation
Indices: 8174843--8174887 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8174833 ACTAAAATAC
*
8174843 CTAAAA-ATAATATAATATT
1 CTAAAACATAAT-TAAAATT
*
8174862 CTAAATCATAATTAAAATT
1 CTAAAACATAATTAAAATT
8174881 CTAAAAC
1 CTAAAAC
8174888 CTATTTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (19 bp):
CTAAAACATAATTAAAATT
Found at i:8176614 original size:16 final size:15
Alignment explanation
Indices: 8176594--8176623 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8176584 CAAATCTATT
8176594 TTTTTTTCTGCACTA
1 TTTTTTTCTGCACTA
8176609 TTTTTTTCTGCACTA
1 TTTTTTTCTGCACTA
8176624 CATTGTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTTTTTCTGCACTA
Found at i:8176765 original size:5 final size:5
Alignment explanation
Indices: 8176755--8176888 Score: 60
Period size: 5 Copynumber: 26.8 Consensus size: 5
8176745 TGTTCAGAGA
* * *
8176755 AAAAT AAAAT AAAAT -AAAT CAAAAT -AAAG AAAAT AGAAT AAAAT -AAAG
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
* * * * * * * ****
8176803 CAAAT AGAAT AAAAT -AAAG CAAAT AGAAT GAAAT AAAGT TCGCT AAAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT
* *
8176853 AAAAC AAAAT AAAACA AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAA-T AAAAT AAAAT -AAAAT AAAA
8176889 ACAAAAATAT
Statistics
Matches: 92, Mismatches: 29, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
4 13 0.14
5 65 0.71
6 14 0.15
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:8176789 original size:19 final size:19
Alignment explanation
Indices: 8176755--8176840 Score: 111
Period size: 19 Copynumber: 4.5 Consensus size: 19
8176745 TGTTCAGAGA
*
8176755 AAAATAAAATAAAATA-AAT
1 AAAAT-AAAGAAAATAGAAT
8176774 CAAAATAAAGAAAATAGAAT
1 -AAAATAAAGAAAATAGAAT
*
8176794 AAAATAAAGCAAATAGAAT
1 AAAATAAAGAAAATAGAAT
*
8176813 AAAATAAAGCAAATAGAAT
1 AAAATAAAGAAAATAGAAT
*
8176832 GAAATAAAG
1 AAAATAAAG
8176841 TTCGCTAAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
19 54 0.87
20 8 0.13
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.16
Consensus pattern (19 bp):
AAAATAAAGAAAATAGAAT
Found at i:8176816 original size:29 final size:29
Alignment explanation
Indices: 8176755--8176820 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
8176745 TGTTCAGAGA
*
8176755 AAAATAAAATAAAATAAATCAAAATAAAG
1 AAAATAAAATAAAATAAAGCAAAATAAAG
* *
8176784 AAAATAGAATAAAATAAAGC-AAATAGAAT
1 AAAATAAAATAAAATAAAGCAAAATA-AAG
8176813 AAAATAAA
1 AAAATAAA
8176821 GCAAATAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 5 0.16
29 27 0.84
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (29 bp):
AAAATAAAATAAAATAAAGCAAAATAAAG
Found at i:8176872 original size:11 final size:11
Alignment explanation
Indices: 8176847--8176905 Score: 84
Period size: 11 Copynumber: 5.4 Consensus size: 11
8176837 AAAGTTCGCT
8176847 AAAAATAAAAC
1 AAAAATAAAAC
8176858 -AAAATAAAAC
1 AAAAATAAAAC
*
8176868 AAAAATAAAAT
1 AAAAATAAAAC
8176879 AAAAATAAAAAC
1 AAAAAT-AAAAC
*
8176891 AAAAATATAAC
1 AAAAATAAAAC
8176902 AAAA
1 AAAA
8176906 TGGGTTGTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
10 10 0.23
11 23 0.53
12 10 0.23
ACGTcount: A:0.81, C:0.07, G:0.00, T:0.12
Consensus pattern (11 bp):
AAAAATAAAAC
Found at i:8182238 original size:19 final size:19
Alignment explanation
Indices: 8182211--8182261 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
8182201 AAGTTGTTTT
8182211 TTAAA-AAAAAAATAAGAA
1 TTAAATAAAAAAATAAGAA
*
8182229 TTAAATAAAAGAAA-AATAA
1 TTAAATAAAA-AAATAAGAA
*
8182248 TTAAATAAACAAAT
1 TTAAATAAAAAAAT
8182262 TAAAGAGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 8 0.29
19 17 0.61
20 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.22
Consensus pattern (19 bp):
TTAAATAAAAAAATAAGAA
Found at i:8183702 original size:170 final size:170
Alignment explanation
Indices: 8183250--8183841 Score: 578
Period size: 170 Copynumber: 3.5 Consensus size: 170
8183240 GCACTTATCA
** * * * * **
8183250 CAGAGATTCTCTAGAAAAGGGGAAAATGCTTCACCTGGAATGAACCTTTCCTTTTTGTTTGATTT
1 CAGAGATTCTCTAGAAAATAGGAAAATGCTTCCCCTAGAATGAGCATTTCCTTTTTGTCAGATTT
* ** * *** *
8183315 TATCTGCATGTCTCATTCAATTACATGAACGTATGATGTCAATAGTTGGGGAACTATTCACATCA
66 TATCTGCATGTCTCAGTCAATTATGTGAAGGTATGATGTTGGTAGTTGGGGAACTATTCACATTA
* * *
8183380 ACACCATTTATGTTTGATGGGATGATACACTATGGCATGG
131 ACCCCATTTATGTTTGATGGGATGAGACACTATGACATGG
* * * * * * *
8183420 TAGAGATTCTCT-GAAAA-A-GAGGAA-----CCCCTGGTATAAGCCTTTTCTTTTTGTCAGATT
1 CAGAGATTCTCTAGAAAATAGGA-AAATGCTTCCCCTAGAATGAGCATTTCCTTTTTGTCAGATT
* * * * * *
8183477 TTATATGCATGTCTCAATCAATTATGTAAAGGTATGATGTTGGCAATTGGGGAACTATTCTCATT
65 TTATCTGCATGTCTCAGTCAATTATGTGAAGGTATGATGTTGGTAGTTGGGGAACTATTCACATT
* * *
8183542 AACCCCATTTATGTTTGATGGAATGAGACACTATGATATGA
130 AACCCCATTTATGTTTGATGGGATGAGACACTATGACATGG
* * ** *
8183583 CAAAGATTCTCTGGAAAATAGGAAAGCGCTTCCCCTAGAATGAGCATTTCCTTTTTGTTAGATTT
1 CAGAGATTCTCTAGAAAATAGGAAAATGCTTCCCCTAGAATGAGCATTTCCTTTTTGTCAGATTT
* * ** *
8183648 TATCTGCATGTCTCAGTCAATGATGTGAAGGTGTGATGTTGGTAGTCAGGGAACTATTCCCA-TA
66 TATCTGCATGTCTCAGTCAATTATGTGAAGGTATGATGTTGGTAGTTGGGGAACTATTCACATTA
* * *
8183712 GACCCTATTTATATTTGATGGGATAAGACACTATGACATGG
131 -ACCCCATTTATGTTTGATGGGATGAGACACTATGACATGG
* * * *
8183753 CAGAGATTCCCTAGAAAATGGGAAAATGCTTCCCTTAGAAGGAG-ATTT--TATTTTGTCAGATT
1 CAGAGATTCTCTAGAAAATAGGAAAATGCTTCCCCTAGAATGAGCATTTCCT-TTTTGTCAGATT
* * *
8183815 TCATCTGTATGTCTCAGTTAATTATGT
65 TTATCTGCATGTCTCAGTCAATTATGT
8183842 CTCTATTTTT
Statistics
Matches: 343, Mismatches: 68, Indels: 24
0.79 0.16 0.06
Matches are distributed among these distances:
163 123 0.36
164 5 0.01
165 2 0.01
166 2 0.01
167 3 0.01
168 36 0.10
169 11 0.03
170 161 0.47
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (170 bp):
CAGAGATTCTCTAGAAAATAGGAAAATGCTTCCCCTAGAATGAGCATTTCCTTTTTGTCAGATTT
TATCTGCATGTCTCAGTCAATTATGTGAAGGTATGATGTTGGTAGTTGGGGAACTATTCACATTA
ACCCCATTTATGTTTGATGGGATGAGACACTATGACATGG
Found at i:8184465 original size:170 final size:167
Alignment explanation
Indices: 8184062--8184624 Score: 566
Period size: 170 Copynumber: 3.4 Consensus size: 167
8184052 AGGGGAAAAT
* * * *
8184062 GCTTCCCCTGGAACGAGCCTTTCCTTTTTTTTAGATTTTATCTGCATGTCTCAGTCAATTACGTG
1 GCTTCCCCTGGAACGAGCCTTTCCTTTTTGTCAGATTTTATCTGCATGTCTAAGTCAATTATGTG
* * * *
8184127 AAGGTATGATGTCAACAGTCGGGGAACTATTCCTGTCAAAACCATTTATGTTTGATGGATGGGAC
66 AAGGTATGATGTTAACAGTTGGGGAACTATTCCTGTCAACACCATTTATGTTTGATGGATGAGAC
* * * *
8184192 ACTATGACATGACATAGATTCTCTAAAAAAGAGGAA-A
131 ACTATGACATGACAGAGATTCT-TGAAAAAGGGGAAGC
* * ** * * * *
8184229 G-----CCTAGAATGATTCTTTCCTTTTTGTTAGATTTTATATACATGTCTCAA-ACAATTATGT
1 GCTTCCCCTGGAACGAGCCTTTCCTTTTTGTCAGATTTTATCTGCATGTCT-AAGTCAATTATGT
* ** ** * *
8184288 AAAGGTATGATGTTTCCAGTTGGGGAACTATTTTTGTCAACCCCATTTATGTTTGATGTAATGAG
65 GAAGGTATGATGTTAACAGTTGGGGAACTATTCCTGTCAACACCATTTATGTTTGATG-GATGAG
* * * *
8184353 ACACTATAACATAAAAGAGATTCTGTGGAAAATGGGGAAGC
129 ACACTATGACATGACAGAGATTCT-T-GAAAAAGGGGAAGC
* * *
8184394 GCTTCCCCTGGAACGAGCCTTTCCTTTTTGTCATATTTTATCTGCATGTCTAAGTTAATTATATG
1 GCTTCCCCTGGAACGAGCCTTTCCTTTTTGTCAGATTTTATCTGCATGTCTAAGTCAATTATGTG
*** * * * ** * *
8184459 AAGGTATGATGTTGGTAGTTAGGGAACTATACCCGTCGGCACCATTTATATTTGATGGGATGATA
66 AAGGTATGATGTTAACAGTTGGGGAACTATTCCTGTCAACACCATTTATGTTTGAT-GGATGAGA
* *
8184524 CACTATGACATGACAGAGATTATTTGAAAAACGGGAAGC
130 CACTATGACATGACAGAGATT-CTTGAAAAAGGGGAAGC
* *
8184563 GCTTCCCCTGGAACGAGCTTTTCCTTTTTGTCAGATTTCATCTGCATGTCTCAA-TCAATTAT
1 GCTTCCCCTGGAACGAGCCTTTCCTTTTTGTCAGATTTTATCTGCATGTCT-AAGTCAATTAT
8184625 TTCTCTATTT
Statistics
Matches: 317, Mismatches: 66, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
162 95 0.30
163 26 0.08
164 9 0.03
165 1 0.00
167 1 0.00
169 69 0.22
170 114 0.36
171 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (167 bp):
GCTTCCCCTGGAACGAGCCTTTCCTTTTTGTCAGATTTTATCTGCATGTCTAAGTCAATTATGTG
AAGGTATGATGTTAACAGTTGGGGAACTATTCCTGTCAACACCATTTATGTTTGATGGATGAGAC
ACTATGACATGACAGAGATTCTTGAAAAAGGGGAAGC
Found at i:8184762 original size:784 final size:786
Alignment explanation
Indices: 8183255--8184829 Score: 2169
Period size: 784 Copynumber: 2.0 Consensus size: 786
8183245 TATCACAGAG
*
8183255 ATTCTCTAGAAAAGGGGAAAATGCTTCACCTGGAATGAACCTTTCCTTTTTGTTTGATTTTATCT
1 ATTCTCTAGAAAAGGGGAAAATGCTTCACCTGGAACGAACCTTTCCTTTTTGTTTGATTTTATCT
* * * *
8183320 GCATGTCTCATTCAATTACATGAACGTATGATGTCAATAGTTGGGGAACTATTCACATCAACACC
66 GCATGTCTCAGTCAATTACATGAACGTATGATGTCAACAGTCGGGGAACTATTCACATCAAAACC
* * ** * * *
8183385 ATTTATGTTTGATGGGATGATACACTATGGCATGGTAGAGATTCTCTGAAAAAGAGGAACCCCTG
131 ATTTATGTTTGATGGGATGAGACACTATGACATGACAGAGATTCTCTAAAAAAGAGGAAACCCTA
* * * *
8183450 GTATAAGCCTTTTCTTTTTGTCAGATTTTATATGCATGTCTCAATCAATTATGTAAAGGTATGAT
196 GAATAAGCCTTTCCTTTTTGTCAGATTTTATATACATGTCTCAAACAATTATGTAAAGGTATGAT
* * * *
8183515 GTTGGCAATTGGGGAACTATTCTCATTAACCCCATTTATGTTTGATGGAATGAGACACTATGATA
261 GTTGCCAATTGGGGAACTATTCTCATCAACCCCATTTATGTTTGATGGAATGAGACACTATAACA
* * *
8183580 TGACAAAGATTCTCTGGAAAATAGGAAAGCGCTTCCCCTAGAATGAGCATTTCCTTTTTGTTAGA
326 TGAAAAAGATTCTCTGGAAAATAGGAAAGCGCTTCCCCTAGAACGAGCATTTCCTTTTTGTCAGA
* * * *
8183645 TTTTATCTGCATGTCTCAGTCAATGATGTGAAGGTGTGATGTTGGTAGTCAGGGAACTATTCCCA
391 TTTTATCTGCATGTCTAAGTCAATGATATGAAGGTATGATGTTGGTAGTCAGGGAACTATACCCA
* * *
8183710 TAGACCCTATTTATATTTGATGGGATAAGACACTATGACATGGCAGAGATTCCCTAGAAAATGGG
456 TAGACCCTATTTATATTTGATGGGATAAGACACTATGACATGACAGAGATTACCTAGAAAACGGG
* * * * * *
8183775 AAAATGCTTCCCTTAGAAGGAGATTTTATTTTGTCAGATTTCATCTGTATGTCTCAGTTAATTAT
521 AAAACGCTTCCCCTAGAACGAGATTTTATTTTGTCAGATTTCATCTGCATGTCTCAATCAATTAT
* * * * *
8183840 GTCTCTATTTTTTCCATCATTTCTCTTAGTTCGTTGGATATTCGAAATTGAAGCAGCACCCTGAA
586 GTCTCTATTTTTTCCATCATTTCTCTTAGATCATTGGATATTCGAAAGTGAAACAGCACCCTCAA
*
8183905 CATCTTCAAACTCTACAAACAAATCCACATGAGATACAAAATGAGAGTAGTATGTCTTAATCATA
651 CATCTTCAAACTCTACAAACAAATCCACATGAGATACAAAATGAGAGTAATATGTCTTAATCATA
* *
8183970 ACAGAAAGGTTGACATCATCGCTT-AAAAAACCTTCTTAAAGAAAGTGGAAATCTAAAATATAAC
716 ACAGAAAGGTTGACATCATCGCTTAAAAAAACCTTCTGAAAGAAAGTGGAAATCTAAAATAGAAC
*
8184034 GAATAT
781 GAAGAT
* *
8184040 ATTCTCTAGAAAAGGGGAAAATGCTTCCCCTGGAACGAGCCTTTCCTTTTT-TTTAGATTTTATC
1 ATTCTCTAGAAAAGGGGAAAATGCTTCACCTGGAACGAACCTTTCCTTTTTGTTT-GATTTTATC
* * *
8184104 TGCATGTCTCAGTCAATTACGTGAAGGTATGATGTCAACAGTCGGGGAACTATTC-CTGTCAAAA
65 TGCATGTCTCAGTCAATTACATGAACGTATGATGTCAACAGTCGGGGAACTATTCAC-ATCAAAA
* * *
8184168 CCATTTATGTTTGAT-GGATGGGACACTATGACATGACATAGATTCTCTAAAAAAGAGGAAAGCC
129 CCATTTATGTTTGATGGGATGAGACACTATGACATGACAGAGATTCTCTAAAAAAGAGGAAACCC
* ** *
8184232 TAGAATGATTCTTTCCTTTTTGTTAGATTTTATATACATGTCTCAAACAATTATGTAAAGGTATG
194 TAGAATAAGCCTTTCCTTTTTGTCAGATTTTATATACATGTCTCAAACAATTATGTAAAGGTATG
* * * ** *
8184297 ATGTTTCCAGTTGGGGAACTATTTTTGTCAACCCCATTTATGTTTGATGTAATGAGACACTATAA
259 ATGTTGCCAATTGGGGAACTATTCTCATCAACCCCATTTATGTTTGATGGAATGAGACACTATAA
* * * * *
8184362 CAT-AAAAGAGATTCTGTGGAAAATGGGGAAGCGCTTCCCCTGGAACGAGCCTTTCCTTTTTGTC
324 CATGAAAA-AGATTCTCTGGAAAATAGGAAAGCGCTTCCCCTAGAACGAGCATTTCCTTTTTGTC
* * * *
8184426 ATATTTTATCTGCATGTCTAAGTTAATTATATGAAGGTATGATGTTGGTAGTTAGGGAACTATAC
388 AGATTTTATCTGCATGTCTAAGTCAATGATATGAAGGTATGATGTTGGTAGTCAGGGAACTATAC
* * * * * * *
8184491 CCGTCGGCACC-ATTTATATTTGATGGGATGATACACTATGACATGACAGAGATTA-TTTGAAAA
453 CCATAGAC-CCTATTTATATTTGATGGGATAAGACACTATGACATGACAGAGATTACCTAG-AAA
* * * *
8184554 ACGGG-AAGCGCTTCCCCTGGAACGAGCTTTTCCTTTTTGTCAGATTTCATCTGCATGTCTCAAT
516 ACGGGAAAACGCTTCCCCTAGAACGAGATTTT--ATTTTGTCAGATTTCATCTGCATGTCTCAAT
* * * *
8184618 CAATTATTTCTCTA-TTTTTCCATCATTTTTCTTAGATCATTGGATATTCGAACGTGAAATAGCA
579 CAATTATGTCTCTATTTTTTCCATCATTTCTCTTAGATCATTGGATATTCGAAAGTGAAACAGCA
* *
8184682 TCCTCAACATTTTCAAACTCTACAAACAAATCCACATGAGATACAAAATGAGAGTAATATGTCTT
644 CCCTCAACATCTTCAAACTCTACAAACAAATCCACATGAGATACAAAATGAGAGTAATATGTCTT
* * * * * *
8184747 AATCGTAACAGAAAGGTTGACATCATTGCTTAAAAAAATCTTCTGAATGACAGTGGCAATCTAAA
709 AATCATAACAGAAAGGTTGACATCATCGCTTAAAAAAACCTTCTGAAAGAAAGTGGAAATCTAAA
8184812 ATAGAACGAAGAT
774 ATAGAACGAAGAT
8184825 ATTCT
1 ATTCT
8184830 TCTTTTCCTT
Statistics
Matches: 687, Mismatches: 95, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
783 25 0.04
784 449 0.65
785 213 0.31
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (786 bp):
ATTCTCTAGAAAAGGGGAAAATGCTTCACCTGGAACGAACCTTTCCTTTTTGTTTGATTTTATCT
GCATGTCTCAGTCAATTACATGAACGTATGATGTCAACAGTCGGGGAACTATTCACATCAAAACC
ATTTATGTTTGATGGGATGAGACACTATGACATGACAGAGATTCTCTAAAAAAGAGGAAACCCTA
GAATAAGCCTTTCCTTTTTGTCAGATTTTATATACATGTCTCAAACAATTATGTAAAGGTATGAT
GTTGCCAATTGGGGAACTATTCTCATCAACCCCATTTATGTTTGATGGAATGAGACACTATAACA
TGAAAAAGATTCTCTGGAAAATAGGAAAGCGCTTCCCCTAGAACGAGCATTTCCTTTTTGTCAGA
TTTTATCTGCATGTCTAAGTCAATGATATGAAGGTATGATGTTGGTAGTCAGGGAACTATACCCA
TAGACCCTATTTATATTTGATGGGATAAGACACTATGACATGACAGAGATTACCTAGAAAACGGG
AAAACGCTTCCCCTAGAACGAGATTTTATTTTGTCAGATTTCATCTGCATGTCTCAATCAATTAT
GTCTCTATTTTTTCCATCATTTCTCTTAGATCATTGGATATTCGAAAGTGAAACAGCACCCTCAA
CATCTTCAAACTCTACAAACAAATCCACATGAGATACAAAATGAGAGTAATATGTCTTAATCATA
ACAGAAAGGTTGACATCATCGCTTAAAAAAACCTTCTGAAAGAAAGTGGAAATCTAAAATAGAAC
GAAGAT
Found at i:8185203 original size:36 final size:37
Alignment explanation
Indices: 8185145--8185215 Score: 101
Period size: 36 Copynumber: 1.9 Consensus size: 37
8185135 ACATAATACC
8185145 AAAACTTAATATAAATACATAATAA-AAAACAAAAAA
1 AAAACTTAATATAAATACATAATAATAAAACAAAAAA
* *
8185181 AAAACTTAATATAAGA-ATATAATAATGAAACAAAA
1 AAAACTTAATATAA-ATACATAATAATAAAACAAAA
8185216 TATAAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 22 0.71
37 9 0.29
ACGTcount: A:0.69, C:0.07, G:0.03, T:0.21
Consensus pattern (37 bp):
AAAACTTAATATAAATACATAATAATAAAACAAAAAA
Found at i:8189323 original size:3 final size:3
Alignment explanation
Indices: 8189315--8189350 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8189305 TCAAATATTA
8189315 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8189351 TTTTTAATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8191106 original size:33 final size:33
Alignment explanation
Indices: 8191069--8191134 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
8191059 AATCTAAAAA
* *
8191069 AAATGTCATTTAGGATACAAAGAATCAGTAAAC
1 AAATGTCATTTAAGATACAAAGAATCAATAAAC
*
8191102 AAATGTCATTTAAGATACAATGAATCAATAAAC
1 AAATGTCATTTAAGATACAAAGAATCAATAAAC
8191135 TAGTCAACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (33 bp):
AAATGTCATTTAAGATACAAAGAATCAATAAAC
Found at i:8200094 original size:385 final size:385
Alignment explanation
Indices: 8199378--8200158 Score: 1465
Period size: 385 Copynumber: 2.0 Consensus size: 385
8199368 GACCTCCACA
*
8199378 AGAAGCATCTCCATATGGTAAGTGAAATTTTCGGTATGAAAGTATACAAGTATGTCTTACTCTCC
1 AGAAGCATCTCCATATGGTAAGTGAAATTTTCGGTATGAAAGTATAAAAGTATGTCTTACTCTCC
8199443 TAATGACTCAATGCTTTTATCAAATTACTTGATTAGATGCGAGCATTGATGGAATCATCGAAGCC
66 TAATGACTCAATGCTTTTATCAAATTACTTGATTAGATGCGAGCATTGATGGAATCATCGAAGCC
*
8199508 TGAAGTAAATGCAAACAATCGTAAAGAAATGCTAATGCAAGTTCTTTTATTTTTGTTGTTAAATG
131 TGAAGTAAATGCAAACAATCGTAAAGAAACGCTAATGCAAGTTCTTTTATTTTTGTTGTTAAATG
*
8199573 CAAGCCCCAAAGAGGTAGAAATATTACTACAACCATGAAGAAACAAGTAATTTTCATCATTTTCT
196 CAAGCCCCAAAGAGGTAGAAATATTACTAAAACCATGAAGAAACAAGTAATTTTCATCATTTTCT
*
8199638 TAACCATGTGAATCCTAAAATAACTTGGTTGTGGTTTCAGTATCTAATTATTCTTTTGAATTTGG
261 TAACCATGTGAATCCTAAAATAACTTGGTTGTGGTTTCAGTATCTAATTATTCTTTTGAATTTGA
8199703 AAATTAGGAGAAGGTTGTGAATCCAGTTTTTCAAAAGTGTCTAAAACAACTTAGTATTGG
326 AAATTAGGAGAAGGTTGTGAATCCAGTTTTTCAAAAGTGTCTAAAACAACTTAGTATTGG
* *
8199763 AGAAGCATCTCCATATGGTAAGTGAAATTTTTGGTATGAAAGTATAAAAGTATGTGTTACTCTCC
1 AGAAGCATCTCCATATGGTAAGTGAAATTTTCGGTATGAAAGTATAAAAGTATGTCTTACTCTCC
*
8199828 TAATGACTCAATGCTTTTATCAAATTACTTGATTAGATGCGAGCATTGATGGAATCATCGCAGCC
66 TAATGACTCAATGCTTTTATCAAATTACTTGATTAGATGCGAGCATTGATGGAATCATCGAAGCC
8199893 TGAAGTAAATGCAAACAATCGTAAAGAAACGCTAATGCAAGTTCTTTTATTTTTGTTGTTAAATG
131 TGAAGTAAATGCAAACAATCGTAAAGAAACGCTAATGCAAGTTCTTTTATTTTTGTTGTTAAATG
* *
8199958 CAAGCCCCAAAGAGGTGGAAATGTTACTAAAACCATGAAGAAACAAGTAATTTTCATCATTTTCT
196 CAAGCCCCAAAGAGGTAGAAATATTACTAAAACCATGAAGAAACAAGTAATTTTCATCATTTTCT
8200023 TAACCATGTGAATCCTAAAATAACTTGGTTGTGGTTTCAGTATCTAATTATTCTTTTGAATTTGA
261 TAACCATGTGAATCCTAAAATAACTTGGTTGTGGTTTCAGTATCTAATTATTCTTTTGAATTTGA
*
8200088 AAATTAGGAGAAGGTTGTGAATCCAGTTTTTCAAAAGTGTCTAAAACAGCTTAGTATTGG
326 AAATTAGGAGAAGGTTGTGAATCCAGTTTTTCAAAAGTGTCTAAAACAACTTAGTATTGG
8200148 AGAAGCA-CTCC
1 AGAAGCATCTCC
8200159 TTCTAAAGAA
Statistics
Matches: 386, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
384 4 0.01
385 382 0.99
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (385 bp):
AGAAGCATCTCCATATGGTAAGTGAAATTTTCGGTATGAAAGTATAAAAGTATGTCTTACTCTCC
TAATGACTCAATGCTTTTATCAAATTACTTGATTAGATGCGAGCATTGATGGAATCATCGAAGCC
TGAAGTAAATGCAAACAATCGTAAAGAAACGCTAATGCAAGTTCTTTTATTTTTGTTGTTAAATG
CAAGCCCCAAAGAGGTAGAAATATTACTAAAACCATGAAGAAACAAGTAATTTTCATCATTTTCT
TAACCATGTGAATCCTAAAATAACTTGGTTGTGGTTTCAGTATCTAATTATTCTTTTGAATTTGA
AAATTAGGAGAAGGTTGTGAATCCAGTTTTTCAAAAGTGTCTAAAACAACTTAGTATTGG
Found at i:8214715 original size:24 final size:23
Alignment explanation
Indices: 8214688--8214763 Score: 55
Period size: 24 Copynumber: 3.2 Consensus size: 23
8214678 CTTCAACTTC
8214688 TTCACATCTATAATCATCCACTCT
1 TTCACATC-ATAATCATCCACTCT
* ** *
8214712 TTCATCTTCATTTTCATCAACT-T
1 TTCA-CATCATAATCATCCACTCT
* *
8214735 CATCACATCCATCATCATCCACTCT
1 -TTCACAT-CATAATCATCCACTCT
8214760 TTCA
1 TTCA
8214764 TCTTCATCAT
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
23 3 0.08
24 31 0.82
25 4 0.11
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.39
Consensus pattern (23 bp):
TTCACATCATAATCATCCACTCT
Found at i:8214771 original size:24 final size:24
Alignment explanation
Indices: 8214700--8214779 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
8214690 CACATCTATA
*
8214700 ATCATCCACTCTTTCATCTTCATT
1 ATCATCCACTCTTTCATCTTCATC
* * * *
8214724 TTCATCAACT-TCATCA-CATCCATC
1 ATCATCCACTCT-TTCATC-TTCATC
8214748 ATCATCCACTCTTTCATCTTCATC
1 ATCATCCACTCTTTCATCTTCATC
8214772 ATCA-CCAC
1 ATCATCCAC
8214780 CTTCACTCAT
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
23 6 0.14
24 35 0.81
25 2 0.05
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (24 bp):
ATCATCCACTCTTTCATCTTCATC
Found at i:8214784 original size:21 final size:26
Alignment explanation
Indices: 8214744--8214793 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 26
8214734 TCATCACATC
8214744 CATCATCATCCACTCTTTCA-TC-TT
1 CATCATCATCCACTCTTTCACTCATT
8214768 CATCATCA-CCAC-C-TTCACTCATT
1 CATCATCATCCACTCTTTCACTCATT
8214791 CAT
1 CAT
8214794 TCACCTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.17
22 3 0.12
23 9 0.38
24 8 0.33
ACGTcount: A:0.24, C:0.40, G:0.00, T:0.36
Consensus pattern (26 bp):
CATCATCATCCACTCTTTCACTCATT
Found at i:8214784 original size:48 final size:48
Alignment explanation
Indices: 8214681--8214784 Score: 145
Period size: 48 Copynumber: 2.2 Consensus size: 48
8214671 TTACCATCTT
* * ** *
8214681 CAACTTCTTCACATCTATAATCATCCACTCTTTCATCTTCATTTTCAT
1 CAACTTCATCACATCCATAATCATCCACTCTTTCATCTTCATCATCAC
*
8214729 CAACTTCATCACATCCATCATCATCCACTCTTTCATCTTCATCATCAC
1 CAACTTCATCACATCCATAATCATCCACTCTTTCATCTTCATCATCAC
*
8214777 CACCTTCA
1 CAACTTCA
8214785 CTCATTCATT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.26, C:0.37, G:0.00, T:0.38
Consensus pattern (48 bp):
CAACTTCATCACATCCATAATCATCCACTCTTTCATCTTCATCATCAC
Found at i:8217134 original size:19 final size:19
Alignment explanation
Indices: 8217090--8217139 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
8217080 AACGTATTCG
* *
8217090 TTAAATATAATTATTTTTA
1 TTAAATATTATTATGTTTA
*
8217109 TTTAATATTATTATAGTTT-
1 TTAAATATTATTAT-GTTTA
8217128 TTAAATATTATT
1 TTAAATATTATT
8217140 CAACTACAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 23 0.88
20 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
TTAAATATTATTATGTTTA
Done.