Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 56
Found at i:8894171 original size:59 final size:59
Alignment explanation
Indices: 8893999--8894254 Score: 334
Period size: 59 Copynumber: 4.3 Consensus size: 59
8893989 TTAAAGTGTT
* * ** *
8893999 GTGAATTGAGCCATAGGAAATGTTAACCCCTCTGGTGGGGCATTGCTGATTTGAAATGTC
1 GTGAATCGAG-CAAAGGAAATGTTAACCCCTCTGGTGGGGCATCACTGATTCGAAATGTC
**
8894059 GTGAATCGAGCAAAGGAAATGTTAA-CCCTCTGGTGGGGCATCACTGATTCGAAATACC
1 GTGAATCGAGCAAAGGAAATGTTAACCCCTCTGGTGGGGCATCACTGATTCGAAATGTC
** * *
8894117 GTGAATCGAGTGAAGGAAATGTTAACCCCTCTGGTGGGGCATTACTGATTCGAAATGTT
1 GTGAATCGAGCAAAGGAAATGTTAACCCCTCTGGTGGGGCATCACTGATTCGAAATGTC
* * * **
8894176 GTGAATCGAGCAAAGGAAATGTTAACCTCTCTGGTGGGTCGTCACTGATTAAAAATGTC
1 GTGAATCGAGCAAAGGAAATGTTAACCCCTCTGGTGGGGCATCACTGATTCGAAATGTC
**
8894235 GTGAATCGAGTGAAGGAAAT
1 GTGAATCGAGCAAAGGAAAT
8894255 ATTGAAAACA
Statistics
Matches: 171, Mismatches: 24, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
58 51 0.30
59 111 0.65
60 9 0.05
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (59 bp):
GTGAATCGAGCAAAGGAAATGTTAACCCCTCTGGTGGGGCATCACTGATTCGAAATGTC
Found at i:8894384 original size:42 final size:42
Alignment explanation
Indices: 8894279--8894392 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
8894269 GCCTGAAGGT
* *
8894279 CTTATGGATGGCCCAAAGGACTTA-TCATCTTGCTCGAAAGA
1 CTTATAGATGGCCCAAAGGACTTACTCATCATGCTCGAAAGA
** * *
8894320 CTTATAGATGGCCTGAATGACTTACGCATCATGCTCGAAAGA
1 CTTATAGATGGCCCAAAGGACTTACTCATCATGCTCGAAAGA
*
8894362 CTTACTA-ATTGCCCAAAGGACTTACTCATCA
1 CTTA-TAGATGGCCCAAAGGACTTACTCATCA
8894393 ACAAACCCTT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 20 0.33
42 38 0.63
43 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
CTTATAGATGGCCCAAAGGACTTACTCATCATGCTCGAAAGA
Found at i:8894573 original size:53 final size:54
Alignment explanation
Indices: 8894388--8894579 Score: 201
Period size: 56 Copynumber: 3.5 Consensus size: 54
8894378 AGGACTTACT
* * * * * *
8894388 CATCAACAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAATCTCGTTTTTAATTAT
1 CATCAAGAAACCCCTGAAAATCAGGCTTAGTTTC-TAAAAACTCGTTTTGAA-TAA
* * * *
8894444 CATCAAGAAACCCCT-AAAATTAGGCTTAGCTTCTTTAAAAATTC-TTTGGAAATAA
1 CATCAAGAAACCCCTGAAAATCAGGCTTAG-TT-TCTAAAAACTCGTTTTG-AATAA
8894499 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTAAAAACTCGTTTTGAA-AA
1 -CATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTAAAAACTCGTTTTGAATAA
* *
8894553 CATCAAGAAACCCCTAAAAATTAGGCT
1 CATCAAGAAACCCCTGAAAATCAGGCT
8894580 CGACTTCTTT
Statistics
Matches: 114, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
53 25 0.22
54 2 0.02
55 28 0.25
56 45 0.39
57 14 0.12
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
CATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTAAAAACTCGTTTTGAATAA
Found at i:8894629 original size:117 final size:111
Alignment explanation
Indices: 8894387--8894668 Score: 329
Period size: 117 Copynumber: 2.5 Consensus size: 111
8894377 AAGGACTTAC
* * * * * *
8894387 TCATCAACAAACCCTTGAAAATCAAGCTTAGTTTCTTAAAATCTCGTTTTTAATTATCATCAAGA
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAAAAACTCGTTTTGAA-TAACATCAAGA
* *
8894452 AACCCCTAAAATTAGGCTTAGCTTCTTTAAAAATTCTTTGGAAATAA
65 AACCCCTAAAATTAGGCTGAGCTTCTTTAAAAATTCATTGGAAATAA
8894499 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTC-TAAAAACTCGTTTTGAA-AACATCAAGAA
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAAAAACTCGTTTTGAATAACATCAAGAA
*
8894562 ACCCCTAAAAATTAGGCTCGA-CTTCTTTTTTTTAAAAAATATCATTGGAAATCA
66 ACCCCT-AAAATTAGGCT-GAGCTTC-----TTT-AAAAAT-TCATTGGAAATAA
* * *
8894616 TTATCAAGAAACCCCTGAAAATCAGGCTTAGTTTTTTTAAAAATTC-TTTTGAA
1 TCATCAAGAAACCCCTGAAAATCAGGCTTAG-TTTCTTAAAAACTCGTTTTGAA
8894669 AATCTTGTTG
Statistics
Matches: 147, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
109 16 0.11
110 15 0.10
111 16 0.11
112 32 0.22
115 3 0.02
116 6 0.04
117 41 0.28
118 10 0.07
119 8 0.05
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (111 bp):
TCATCAAGAAACCCCTGAAAATCAGGCTTAGTTTCTTAAAAACTCGTTTTGAATAACATCAAGAA
ACCCCTAAAATTAGGCTGAGCTTCTTTAAAAATTCATTGGAAATAA
Found at i:8896615 original size:26 final size:28
Alignment explanation
Indices: 8896573--8896640 Score: 81
Period size: 26 Copynumber: 2.5 Consensus size: 28
8896563 TTGGATATGT
*
8896573 TTTCTTTCT-TATTTCTTTCG-TCTC-TC
1 TTTCTTTCTGTTTTTCTTT-GTTCTCTTC
8896599 TTT-TTTCTGTTTTTCTTTGTTCTCTTC
1 TTTCTTTCTGTTTTTCTTTGTTCTCTTC
*
8896626 TTTCTTTCTTTTTTT
1 TTTCTTTCTGTTTTT
8896641 GTGTGTGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 6 0.17
26 15 0.42
27 5 0.14
28 10 0.28
ACGTcount: A:0.01, C:0.21, G:0.04, T:0.74
Consensus pattern (28 bp):
TTTCTTTCTGTTTTTCTTTGTTCTCTTC
Found at i:8896629 original size:24 final size:25
Alignment explanation
Indices: 8896574--8896631 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
8896564 TGGATATGTT
8896574 TTCTTTCTTATTTCTTTCGTCTCTC
1 TTCTTTCTTATTTCTTTCGTCTCTC
* *
8896599 TTTTTTCTGTTTTTCTTT-GT-TCTC
1 TTCTTTCT-TATTTCTTTCGTCTCTC
8896623 TTCTTTCTT
1 TTCTTTCTT
8896632 TCTTTTTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 1 0.03
24 11 0.38
25 9 0.31
26 8 0.28
ACGTcount: A:0.02, C:0.22, G:0.05, T:0.71
Consensus pattern (25 bp):
TTCTTTCTTATTTCTTTCGTCTCTC
Found at i:8899403 original size:19 final size:19
Alignment explanation
Indices: 8899363--8899405 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8899353 AACTTGGTGA
*
8899363 TTTTAATAAAATAATTTAT
1 TTTTAATAAAATAATTGAT
* *
8899382 TTTTATTAAAAT-ATTGAG
1 TTTTAATAAAATAATTGAT
8899400 TTTTAA
1 TTTTAA
8899406 GGTCTGTGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
TTTTAATAAAATAATTGAT
Found at i:8906352 original size:21 final size:22
Alignment explanation
Indices: 8906314--8906358 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
8906304 GTTTTAAGGC
**
8906314 TTATGAGTGTTCCTAATC-TGT
1 TTATGAGTGTTCAGAATCATGT
*
8906335 TTATGAGTGTTTAGAATCATGT
1 TTATGAGTGTTCAGAATCATGT
8906357 TT
1 TT
8906359 CTACTCACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.22, C:0.09, G:0.20, T:0.49
Consensus pattern (22 bp):
TTATGAGTGTTCAGAATCATGT
Found at i:8907003 original size:22 final size:22
Alignment explanation
Indices: 8906947--8907003 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
8906937 GCCATTTTTG
*
8906947 GTATCGATACTCCGTGGGTAGA
1 GTATCGATACTCTGTGGGTAGA
8906969 GTATCGATACTCTGTGGGTAGA
1 GTATCGATACTCTGTGGGTAGA
8906991 GTATCGATACTCT
1 GTATCGATACTCT
8907004 CATACTATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.32
Consensus pattern (22 bp):
GTATCGATACTCTGTGGGTAGA
Found at i:8907110 original size:21 final size:22
Alignment explanation
Indices: 8907061--8907115 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
8907051 TACTAGGGTC
* *
8907061 AGTATCGATACCCCCAAGCGAG
1 AGTATCGATACTCCCAAGCAAG
* *
8907083 TGTATCGATACTCTC-AGCAAG
1 AGTATCGATACTCCCAAGCAAG
8907104 AGTATCGATACT
1 AGTATCGATACT
8907116 GAGCAATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (22 bp):
AGTATCGATACTCCCAAGCAAG
Found at i:8908271 original size:55 final size:55
Alignment explanation
Indices: 8908196--8908303 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
8908186 TATATGTTTA
* * * *
8908196 TTTTTAGGTACCAATATATTGAGAGATGTACATAC-TCACACTAGTGTAAGTATTT
1 TTTTTAGGTACCAAGATATTGAAAGATGTACATACGT-ACACCAGTATAAGTATTT
* *
8908251 TTTTTATGTATCAAGATATTGAAAGATGTACATACGTACACCAGTATAAGTAT
1 TTTTTAGGTACCAAGATATTGAAAGATGTACATACGTACACCAGTATAAGTAT
8908304 AATATCAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
55 45 0.98
56 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (55 bp):
TTTTTAGGTACCAAGATATTGAAAGATGTACATACGTACACCAGTATAAGTATTT
Found at i:8911938 original size:233 final size:233
Alignment explanation
Indices: 8911527--8911989 Score: 627
Period size: 233 Copynumber: 2.0 Consensus size: 233
8911517 TCCAACTATT
* *
8911527 AAAAATCACAAAATGATCACATGAATATCAATATGTTTCAAACTCGTAATTTTTTTTAAAAAAAA
1 AAAAATCACAAAATGATCACATGAATATCAATATGTTCCAAACTCGTAATTTTTGTT-AAAAAAA
* *
8911592 TTAATGGCATACTCAACTAGACACTAACCTGTTGATTGTGGTATGATAAAATTTGATCCTAAAAT
65 TTAATGGCATACTCAACTAGACACTAACCTGTTGAATGTGATATGATAAAATTTGATCCTAAAAT
*
8911657 CTCAAACTACTATCATATCTAAGTCAACAAGTTAATGTCTAGCTTAGATTGTCATCAAAT-TTTT
130 CTCAAACTACTATCATATCTAAGTCAACAAGTTAATGTCTAACTTAGATTGTCA-C-AATGTTTT
8911721 AACGAAAAAGAAAGAG-TTGGAACATATGAATAGTTGGTTA
193 AACGAAAAAGAAAGAGTTTGGAACATATGAATAGTTGGTTA
* * * * **
8911761 AAAAATCACAAAATGGTCACGTGACTATTC-ATATGTTCCAAACTTGTCCTTTTTGGTT-AAAAA
1 AAAAATCACAAAATGATCACATGAATA-TCAATATGTTCCAAACTCGTAATTTTT-GTTAAAAAA
* *
8911824 ATTAATGGCAGT-CTCAACTAGACATTAACTTGTTGAATGTGATATGATAAAATTTGAT-CTCAA
64 ATTAATGGCA-TACTCAACTAGACACTAACCTGTTGAATGTGATATGATAAAATTTGATCCT-AA
** *
8911887 AATCTCAAA-TGACTATCATATCTTGGTCAA-TAGATTAATGTCTAACTTAGATTGTCACAATGT
127 AATCTCAAACT-ACTATCATATCTAAGTCAACAAG-TTAATGTCTAACTTAGATTGTCACAATGT
* *
8911950 TTTAACGAAAAAGGACGAGTTTGGAACATATGAATAGTTG
190 TTTAACGAAAAAGAAAGAGTTTGGAACATATGAATAGTTG
8911990 AGTGATCATT
Statistics
Matches: 203, Mismatches: 18, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
231 3 0.01
232 24 0.12
233 127 0.63
234 45 0.22
235 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (233 bp):
AAAAATCACAAAATGATCACATGAATATCAATATGTTCCAAACTCGTAATTTTTGTTAAAAAAAT
TAATGGCATACTCAACTAGACACTAACCTGTTGAATGTGATATGATAAAATTTGATCCTAAAATC
TCAAACTACTATCATATCTAAGTCAACAAGTTAATGTCTAACTTAGATTGTCACAATGTTTTAAC
GAAAAAGAAAGAGTTTGGAACATATGAATAGTTGGTTA
Found at i:8913679 original size:24 final size:24
Alignment explanation
Indices: 8913652--8913711 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
8913642 GTTTTGGACT
*
8913652 AAAATGCCCTTAAATTTTTTTCCA
1 AAAATACCCTTAAATTTTTTTCCA
* *
8913676 AAAACATCCTTAAATTTTTTTCCA
1 AAAATACCCTTAAATTTTTTTCCA
*
8913700 AAAATATCCTTA
1 AAAATACCCTTA
8913712 TTCTATCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (24 bp):
AAAATACCCTTAAATTTTTTTCCA
Found at i:8928320 original size:15 final size:15
Alignment explanation
Indices: 8928300--8928329 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8928290 CTGCCTCAAC
8928300 AAGTGAACCCTAAAA
1 AAGTGAACCCTAAAA
8928315 AAGTGAACCCTAAAA
1 AAGTGAACCCTAAAA
8928330 CCAAACTCGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.13, T:0.13
Consensus pattern (15 bp):
AAGTGAACCCTAAAA
Found at i:8932764 original size:16 final size:16
Alignment explanation
Indices: 8932743--8932794 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 16
8932733 AAATTTTTAG
8932743 AATTCGGTTAACGGTT
1 AATTCGGTTAACGGTT
8932759 AATTCGGTT--C-G--
1 AATTCGGTTAACGGTT
8932770 AATTCGGTTAACGGTT
1 AATTCGGTTAACGGTT
8932786 AATTCGGTT
1 AATTCGGTT
8932795 CGAATTCGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
11 9 0.29
13 2 0.06
14 2 0.06
16 18 0.58
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.38
Consensus pattern (16 bp):
AATTCGGTTAACGGTT
Found at i:8932775 original size:11 final size:9
Alignment explanation
Indices: 8932743--8932809 Score: 70
Period size: 9 Copynumber: 7.4 Consensus size: 9
8932733 AAATTTTTAG
8932743 AATTCGGTT
1 AATTCGGTT
8932752 AA--CGGTT
1 AATTCGGTT
8932759 AATTCGGTT
1 AATTCGGTT
8932768 CGAATTCGGTT
1 --AATTCGGTT
8932779 AA--CGGTT
1 AATTCGGTT
8932786 AATTCGGTT
1 AATTCGGTT
8932795 CGAATTCGGTT
1 --AATTCGGTT
8932806 AATT
1 AATT
8932810 AACCGAATTA
Statistics
Matches: 50, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
7 14 0.28
9 18 0.36
11 18 0.36
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (9 bp):
AATTCGGTT
Found at i:8932780 original size:27 final size:27
Alignment explanation
Indices: 8932742--8932807 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
8932732 AAAATTTTTA
8932742 GAATTCGGTTAACGGTTAATTCGGTTC
1 GAATTCGGTTAACGGTTAATTCGGTTC
8932769 GAATTCGGTTAACGGTTAATTCGGTTC
1 GAATTCGGTTAACGGTTAATTCGGTTC
8932796 GAATTCGGTTAA
1 GAATTCGGTTAA
8932808 TTAACCGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (27 bp):
GAATTCGGTTAACGGTTAATTCGGTTC
Found at i:8933220 original size:182 final size:182
Alignment explanation
Indices: 8932836--8933220 Score: 641
Period size: 182 Copynumber: 2.1 Consensus size: 182
8932826 ATTAAATTTT
* *
8932836 AAATATTAAATATATTATATATAACATATGGGCTCAACCCAAATCATTTAAAACCCAATTAATAA
1 AAATATTAAATATATTATATATAACATATAGGCTCAACCCAAACCATTTAAAACCCAATTAATAA
* *
8932901 TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATACATTTTT
66 TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAAAATTTT
* *
8932966 AATTTATAATTATATATTATTTAAATTATTTGTAAACTGTTTTTTAATTAAA
131 AATTTATAATTATATATTATTTAAATTAATTATAAACTGTTTTTTAATTAAA
8933018 AAATATTAAATATATTATATATAACATATAGGC-CAAGCCCAAACCATTTAAAACCCAATTAATA
1 AAATATTAAATATATTATATATAACATATAGGCTCAA-CCCAAACCATTTAAAACCCAATTAATA
*
8933082 ATTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTTATCTAAAATT
65 ATTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAA-TTATATAAAATT
8933147 TTAATTTATAATTATATATTATTTAAATTAATTATAAACT-TTTTTTGAATTAAA
129 TTAATTTATAATTATATATTATTTAAATTAATTATAAACTGTTTTTT-AATTAAA
* *
8933201 AAATATTTAAT-TTTTATATA
1 AAATATTAAATATATTATATA
8933221 AATTAGAAAA
Statistics
Matches: 191, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
181 3 0.02
182 124 0.65
183 64 0.34
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (182 bp):
AAATATTAAATATATTATATATAACATATAGGCTCAACCCAAACCATTTAAAACCCAATTAATAA
TTTAAGATCCAATAACTTTTAAACTTAAATCAATATTAATTAATTAAAAAATTATATAAAATTTT
AATTTATAATTATATATTATTTAAATTAATTATAAACTGTTTTTTAATTAAA
Found at i:8933367 original size:15 final size:15
Alignment explanation
Indices: 8933347--8933375 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8933337 AAAAAAAGTT
8933347 TGGTTAATTCGGTTA
1 TGGTTAATTCGGTTA
8933362 TGGTTAATTCGGTT
1 TGGTTAATTCGGTT
8933376 CGGTCGGCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.28, T:0.48
Consensus pattern (15 bp):
TGGTTAATTCGGTTA
Found at i:8938878 original size:41 final size:41
Alignment explanation
Indices: 8938821--8938899 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
8938811 GTTCAGCCTG
*
8938821 ATTACTTAGTCCCCTGCAAGCGCTATTAATAGATTTTTGTC
1 ATTACTTAGTCCCCTGCAAGCCCTATTAATAGATTTTTGTC
* *
8938862 ATTACTTAGTCCCCTGCAGGCCCTATTAATAGTTTTTT
1 ATTACTTAGTCCCCTGCAAGCCCTATTAATAGATTTTT
8938900 AAAGGTTATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (41 bp):
ATTACTTAGTCCCCTGCAAGCCCTATTAATAGATTTTTGTC
Found at i:8946705 original size:324 final size:324
Alignment explanation
Indices: 8946116--8946765 Score: 1068
Period size: 324 Copynumber: 2.0 Consensus size: 324
8946106 AAAGGCATAT
*
8946116 TATCCAATGTAAATACTTCAACTTCAGGACAACTTCCATCATTTTTGTGATGTGTACTTGTATGA
1 TATCCAATGTAAATACTTCAACTTCAGGACAACTTCCATAATTTTTGTGATGTGTACTTGTATGA
* ** *
8946181 CACTTTTCATTTCGCAGATCAGGATTCATGCCATACTTATCAAAAGAATCTGGAACCTCAGGCTG
66 CACTTTTCATTTCCCAGATCAGGATTCACACCAGACTTATCAAAAGAATCTGGAACCTCAGGCTG
* *
8946246 GCTTTCAACTTTCACAACAACATTCATCAACTTCGAAGATCCTTCACTTGATTTACAAGCAACTG
131 GCTTTCAACTTTCACAACAACATTCATCAACTTCGAAGATCCTCCACTTGATTTACAAGAAACTG
* * * *
8946311 GATCAGCCTCAGCTCCCTCTTCTAGTTCGTTTTCATCATCTCTCTTTCTTTTCTGACCGGGAACA
196 GATCAACCTCAGCTACCTCTTCTAGTTCATTTTCATAATCTCTCTTTCTTTTCTGACCGGGAACA
* *
8946376 TCTCCTAAACTTTTCTTACCCTCTTCATCTCCGATCTCCAAAGATTTCTTTGTAGTTTTCGGTG
261 TCTCCTAAACTTTTCTTACCCTCTTCATCTCCGATCTCCAAAGATTTCTTTGCAGTTTTCGATG
* * *
8946440 TATCCAATGTAAATACTTCTACTTCAGGGCAACTTCCATAATTTTTGTGATGTGTACTTTTATGA
1 TATCCAATGTAAATACTTCAACTTCAGGACAACTTCCATAATTTTTGTGATGTGTACTTGTATGA
* *
8946505 CACTTTTCATTTCCCAGTTCAGGATTCACACCAGACTTATCAAAAGAATCTGGAACCTCAGGTTG
66 CACTTTTCATTTCCCAGATCAGGATTCACACCAGACTTATCAAAAGAATCTGGAACCTCAGGCTG
* *
8946570 GCTTTCAGCTTTCACAACAGA-ATTCATCAACTTTGAAGATCCTCCACTTGATTTACAAGAAACT
131 GCTTTCAACTTTCACAACA-ACATTCATCAACTTCGAAGATCCTCCACTTGATTTACAAGAAACT
* *
8946634 GGATCAACCTCAGCTACCTCTTGTAGTTCATTTTCATAATCTTTCTTTCTTTTCTGACCGGGAAC
195 GGATCAACCTCAGCTACCTCTTCTAGTTCATTTTCATAATCTCTCTTTCTTTTCTGACCGGGAAC
* *
8946699 ATCTCCTAAACTTTTCTTACCCTCTTCATCTCCGATCTTCAAAGATTTCTTTGCATTTTTCGATG
260 ATCTCCTAAACTTTTCTTACCCTCTTCATCTCCGATCTCCAAAGATTTCTTTGCAGTTTTCGATG
8946764 TA
1 TA
8946766 CCAGCCCTTG
Statistics
Matches: 301, Mismatches: 24, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
324 300 1.00
325 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (324 bp):
TATCCAATGTAAATACTTCAACTTCAGGACAACTTCCATAATTTTTGTGATGTGTACTTGTATGA
CACTTTTCATTTCCCAGATCAGGATTCACACCAGACTTATCAAAAGAATCTGGAACCTCAGGCTG
GCTTTCAACTTTCACAACAACATTCATCAACTTCGAAGATCCTCCACTTGATTTACAAGAAACTG
GATCAACCTCAGCTACCTCTTCTAGTTCATTTTCATAATCTCTCTTTCTTTTCTGACCGGGAACA
TCTCCTAAACTTTTCTTACCCTCTTCATCTCCGATCTCCAAAGATTTCTTTGCAGTTTTCGATG
Found at i:8948338 original size:123 final size:123
Alignment explanation
Indices: 8948190--8948431 Score: 439
Period size: 123 Copynumber: 2.0 Consensus size: 123
8948180 ACACATTTAC
8948190 ATTTACTATTGAAGACACTCAATGAGTTCTATAAACAATACTTAAATTTTGTTAAGTGTGCTTCA
1 ATTTACTATTGAAGACACTCAATGAGTTCTATAAACAATACTTAAATTTTGTTAAGTGTGCTTCA
*
8948255 CGAGGATGTCTACGGAAAGATAGACTAATATAAGACTACAAAACGGAGGATCAATTAT
66 CGAGGATGTCTACGGAAAGACAGACTAATATAAGACTACAAAACGGAGGATCAATTAT
* *
8948313 ATTTACTATTGAAGATACTCAATGAGTTCTATAAACAATACTTAAATTTTGTTAAGTTTGCTTCA
1 ATTTACTATTGAAGACACTCAATGAGTTCTATAAACAATACTTAAATTTTGTTAAGTGTGCTTCA
* *
8948378 CGAGGATGTCTACGGAAAGACATACTAATGTAAGACTACAAAACGGAGGATCAA
66 CGAGGATGTCTACGGAAAGACAGACTAATATAAGACTACAAAACGGAGGATCAA
8948432 GGTGACCGAA
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 114 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (123 bp):
ATTTACTATTGAAGACACTCAATGAGTTCTATAAACAATACTTAAATTTTGTTAAGTGTGCTTCA
CGAGGATGTCTACGGAAAGACAGACTAATATAAGACTACAAAACGGAGGATCAATTAT
Found at i:8958473 original size:30 final size:29
Alignment explanation
Indices: 8958434--8958518 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 29
8958424 AAACATCAAA
*
8958434 AACATAAACTTAAAGGCATAAAATAATAAC
1 AACAGAAACTTAAAGGC-TAAAATAATAAC
* * *
8958464 AACAGAAACTTTAAGGGCTGAAATAATAAT
1 AACAGAAAC-TTAAAGGCTAAAATAATAAC
* *
8958494 AACAGAAATTTAAATGACTAAAATA
1 AACAGAAACTTAAA-GGCTAAAATA
8958519 CAAGAAAGCA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
29 4 0.09
30 34 0.76
31 7 0.16
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22
Consensus pattern (29 bp):
AACAGAAACTTAAAGGCTAAAATAATAAC
Found at i:8959184 original size:10 final size:10
Alignment explanation
Indices: 8959171--8959208 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
8959161 TCATTTACCC
8959171 GAGAGAGAAA
1 GAGAGAGAAA
8959181 GAGAGAGAAA
1 GAGAGAGAAA
8959191 GAGAGAG-AA
1 GAGAGAGAAA
*
8959200 GGGAGAGAA
1 GAGAGAGAA
8959209 TTCCAGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (10 bp):
GAGAGAGAAA
Found at i:8960007 original size:3 final size:3
Alignment explanation
Indices: 8959999--8960031 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
8959989 ATGTAAACAA
8959999 AAT AAT AAT AAT AAT AAAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AA
8960032 CATATTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:8960019 original size:16 final size:16
Alignment explanation
Indices: 8959998--8960052 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
8959988 AATGTAAACA
8959998 AAATAATAATAATAAT
1 AAATAATAATAATAAT
8960014 AAATAATAATAATAAT
1 AAATAATAATAATAAT
*
8960030 AACATATTAATAAATAA-
1 AA-ATAATAAT-AATAAT
8960047 AAATAA
1 AAATAA
8960053 GAAAAAGACC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 21 0.60
17 9 0.26
18 5 0.14
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATAATAATAATAAT
Found at i:8960476 original size:135 final size:135
Alignment explanation
Indices: 8960284--8960545 Score: 389
Period size: 135 Copynumber: 1.9 Consensus size: 135
8960274 TTTACGAAGG
* * *
8960284 GTGATAACTCGGTTTCTATGCGATGAGGACGACTGGTTATCTAGGGGTGACACGGCTCCTACGTG
1 GTGATAACTCGGTTCCTACGCGATGAGGACGACTGGTTATCTAGAGGTGACACGGCTCCTACGTG
* * *
8960349 ATGAGGAGGTCTGGTTAGGGGATGACACAATTCTTACGTGATGAGGACAATTGGCCATCTTTTAG
66 ATGAGGAGGTCTGGTCAGGGGATGACACAATTCCTACGTGATGAGGACAATAGGCCATCTTTTAG
8960414 GAAAT
131 GAAAT
* * ** * *
8960419 GTGATTACTCGGTTCCTACGCGATGGGGACGGTTGGTTATCTATAGGTGACATGGCTCCTACGTG
1 GTGATAACTCGGTTCCTACGCGATGAGGACGACTGGTTATCTAGAGGTGACACGGCTCCTACGTG
* * *
8960484 ATGAGGAGGTCTGGTCGGGGGATGACATAGTTCCTACGTGATGAGGACAATAGGCCATCTTT
66 ATGAGGAGGTCTGGTCAGGGGATGACACAATTCCTACGTGATGAGGACAATAGGCCATCTTT
8960546 AGGGATAATG
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
135 112 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (135 bp):
GTGATAACTCGGTTCCTACGCGATGAGGACGACTGGTTATCTAGAGGTGACACGGCTCCTACGTG
ATGAGGAGGTCTGGTCAGGGGATGACACAATTCCTACGTGATGAGGACAATAGGCCATCTTTTAG
GAAAT
Found at i:8960604 original size:29 final size:29
Alignment explanation
Indices: 8960572--8960636 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 29
8960562 AGAGAAACTG
8960572 ACTCAAAGATG-TTGTT-TCAAAAGAAATAT
1 ACTCAAAGATGATT-TTCTCAAAAGAAAT-T
8960601 ACTCAAAGATGATTTTCTCAAAAGAAATT
1 ACTCAAAGATGATTTTCTCAAAAGAAATT
8960630 ATCTCAA
1 A-CTCAA
8960637 GAGAGACAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.31
Consensus pattern (29 bp):
ACTCAAAGATGATTTTCTCAAAAGAAATT
Found at i:8960624 original size:30 final size:28
Alignment explanation
Indices: 8960556--8960636 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 28
8960546 AGGGATAATG
* *
8960556 GTTTCAAGAGAAACTGACTCAAAGATGTT
1 GTTTCAAAAGAAA-TTACTCAAAGATGTT
8960585 GTTTCAAAAGAAATATACTCAAAGATGATT
1 GTTTCAAAAGAAAT-TACTCAAAGATG-TT
8960615 -TTCTCAAAAGAAATTATCTCAA
1 GTT-TCAAAAGAAATTA-CTCAA
8960637 GAGAGACAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
28 1 0.02
29 27 0.59
30 18 0.39
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (28 bp):
GTTTCAAAAGAAATTACTCAAAGATGTT
Found at i:8960688 original size:37 final size:38
Alignment explanation
Indices: 8960647--8960754 Score: 102
Period size: 37 Copynumber: 2.9 Consensus size: 38
8960637 GAGAGACAAA
8960647 ATTTTGTTTCCAA-AGAAACAGACTCAAAT-TTTTTTT
1 ATTTTGTTTCCAAGAGAAACAGACTCAAATATTTTTTT
* * *
8960683 CATTTTGTTT-CAAGTGAAACATACTTAAATATTTTTTT
1 -ATTTTGTTTCCAAGAGAAACAGACTCAAATATTTTTTT
* *
8960721 GTTTTGTTT-CAAGTA-AAACA-AGCTCAAAGATTTT
1 ATTTTGTTTCCAAG-AGAAACAGA-CTCAAATATTTT
8960755 GTGTTTCCAG
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
36 4 0.07
37 49 0.82
38 7 0.12
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.44
Consensus pattern (38 bp):
ATTTTGTTTCCAAGAGAAACAGACTCAAATATTTTTTT
Found at i:8960892 original size:66 final size:63
Alignment explanation
Indices: 8960822--8961042 Score: 191
Period size: 66 Copynumber: 3.4 Consensus size: 63
8960812 CATAGACAGG
*
8960822 TGTTTCAAGAGAAACTGACTCAAAGAT-TTTCCTTCAAAAGAAACTGTCTCAAACGAGACAAAAT
1 TGTTTCAAGAGAAACT-ACTCAAAGATATTT-CTTCAAAAGAAACTGTCTC-AA-GAGACAAAAC
*
8960886 TT
62 CT
* *
8960888 TGTTTCCAA-AGAAACATACTCAAAGATATTTCTTCAAAAGAAACTGTCTCAAGGGATAAAACCT
1 TGTTT-CAAGAGAAAC-TACTCAAAGATATTTCTTCAAAAGAAACTGTCTCAAGAGACAAAACCT
* * * * * * *
8960952 TGTTTCCAGAGAAACAAACTCAAAGATGATATTGTTTTAAGAGAAAATGTCTCAAGAGACATAA-
1 TGTTTCAAGAGAAAC-TACTCAAAGAT-AT-TT-CTTCAAAAGAAACTGTCTCAAGAGACAAAAC
8961016 -T
62 CT
* *
8961017 TCGTTTCAAG-CAAACGACTCAAAGAT
1 T-GTTTCAAGAGAAACTACTCAAAGAT
8961043 GTTTGTTTTG
Statistics
Matches: 131, Mismatches: 16, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
63 2 0.02
64 40 0.31
65 10 0.08
66 49 0.37
67 30 0.23
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (63 bp):
TGTTTCAAGAGAAACTACTCAAAGATATTTCTTCAAAAGAAACTGTCTCAAGAGACAAAACCT
Found at i:8961131 original size:31 final size:31
Alignment explanation
Indices: 8961084--8961143 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 31
8961074 AGATGGTAAA
*
8961084 TTTTGTTTCCAAAGAAACAT-ACTCAAAGATTT
1 TTTTGTTTCAAAAG-AA-ATGACTCAAAGATTT
8961116 TTTTG-TTCAAAAGAAATGACTCAAAGAT
1 TTTTGTTTCAAAAGAAATGACTCAAAGAT
8961144 GATGGTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 2 0.08
30 12 0.46
31 7 0.27
32 5 0.19
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (31 bp):
TTTTGTTTCAAAAGAAATGACTCAAAGATTT
Found at i:8961274 original size:37 final size:36
Alignment explanation
Indices: 8961233--8961342 Score: 98
Period size: 37 Copynumber: 3.0 Consensus size: 36
8961223 AAGCGAGACG
*
8961233 AAATTTATTTTGAAAGAAATTGTCTC-AACTGAGACAA
1 AAATTT-TTTTAAAAGAAATTGTCTCAAAC-GAGACAA
* * *
8961270 AAATTTGTTTTTAGA-AAACTGTCTCAAACGAGACAA
1 AAATTT-TTTTAAAAGAAATTGTCTCAAACGAGACAA
* * * *
8961306 ATATTTTTTTCAAAAGAAGTTGTCTCTAGCGAGACAA
1 AAATTTTTTT-AAAAGAAATTGTCTCAAACGAGACAA
8961343 CATTTTGTTT
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
35 4 0.07
36 23 0.39
37 32 0.54
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (36 bp):
AAATTTTTTTAAAAGAAATTGTCTCAAACGAGACAA
Found at i:8961496 original size:33 final size:33
Alignment explanation
Indices: 8961442--8961523 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
8961432 TTCTTATCAG
* *
8961442 GATGTTGATT-CCTCAAAGATGCCTCAACATTC
1 GATGTTGATTGCTTCAAAGATGCCCCAACATTC
*
8961474 GATGTTGATTGCTTCAAAGATGCCCCAATATTC
1 GATGTTGATTGCTTCAAAGATGCCCCAACATTC
8961507 GATGTTGATTGCTTCAA
1 GATGTTGATTGCTTCAA
8961524 CACTGATTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 10 0.22
33 36 0.78
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (33 bp):
GATGTTGATTGCTTCAAAGATGCCCCAACATTC
Found at i:8963287 original size:65 final size:65
Alignment explanation
Indices: 8963154--8963313 Score: 211
Period size: 65 Copynumber: 2.5 Consensus size: 65
8963144 TGCACTAAGA
* *
8963154 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAAATAGCCTGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGCATCAATGCATAGCTG
*
8963218 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A-CTCTGAGTGCATCAATGCATAG-
1 GTGCATCGATGCATAAAATGCATTCGATGTTTTCA-AAATAGC-CTGAGTGCATCAATGCATAGC
*
8963280 TAT
64 T-G
* *
8963283 GTGCATCGGTGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
8963314 CAATTTATTC
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
64 30 0.35
65 53 0.62
66 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTTCAAAATAGCCTGAGTGCATCAATGCATAGCTG
Found at i:8963352 original size:65 final size:63
Alignment explanation
Indices: 8963154--8963361 Score: 208
Period size: 65 Copynumber: 3.2 Consensus size: 63
8963144 TGCACTAAGA
* * *
8963154 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTC-AATTAACCTGAGTGCATCGATGCATGGTTG
* * * *
8963218 GTGCATCGATGCATCAAATGCATTCGATGTTTTC-ATAAAACTCTGAGTGCATCAATGCATAGTA
1 GTGCATCGATGCATAAAATGCATTCGATG-TTTCAAT-TAAC-CTGAGTGCATCGATGCATGGT-
8963282 T-
62 TG
* * *
8963283 GTGCATCGGTGCATGAAATGCATTCGATG-TTCAATTTATTCCAT-AGTGCATCGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAA-TTA-ACC-TGAGTGCATCGATGCATGG-T
8963346 TG
62 TG
*
8963348 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
8963362 CACTCTGAAA
Statistics
Matches: 121, Mismatches: 13, Indels: 19
0.79 0.08 0.12
Matches are distributed among these distances:
63 4 0.03
64 49 0.40
65 67 0.55
66 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATTAACCTGAGTGCATCGATGCATGGTTG
Found at i:8966073 original size:21 final size:21
Alignment explanation
Indices: 8966015--8966094 Score: 97
Period size: 21 Copynumber: 3.7 Consensus size: 21
8966005 GGCCTTGTCC
* *
8966015 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATTC-ATG-GTGT
* *
8966038 ATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATTCATGGTGT
*
8966059 ATTGATGCACATTCATGGTGT
1 ATCGATGCACATTCATGGTGT
8966080 ATCGATGCACATTCA
1 ATCGATGCACATTCA
8966095 AAGGGATGCA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
21 35 0.71
22 2 0.04
23 12 0.24
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.30
Consensus pattern (21 bp):
ATCGATGCACATTCATGGTGT
Found at i:8971971 original size:64 final size:65
Alignment explanation
Indices: 8971903--8972026 Score: 166
Period size: 64 Copynumber: 1.9 Consensus size: 65
8971893 TGCACTAAGA
*
8971903 GTGCATCGAAGCATAAAATGCATT-TGATG-TTTCA-AAATAGC-CTGAGTGCATTGATGCATGG
1 GTGCATCGAAGCATAAAATGCATTCT-ATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATGG
8971964 CTG
63 CTG
* *
8971967 GTGCATCGATGCATCAAATGCATTCTATGTTTTCATAAAACTCTGAGTGCATCGATGCAT
1 GTGCATCGAAGCATAAAATGCATTCTATGTTTTCATAAAACTCTGAGTGCATCGATGCAT
8972027 AGTATGCGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
64 26 0.49
65 24 0.45
66 3 0.06
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (65 bp):
GTGCATCGAAGCATAAAATGCATTCTATGTTTTCATAAAACTCTGAGTGCATCGATGCATGGCTG
Found at i:8972038 original size:65 final size:65
Alignment explanation
Indices: 8971905--8972062 Score: 164
Period size: 65 Copynumber: 2.4 Consensus size: 65
8971895 CACTAAGAGT
* * *
8971905 GCATCGAAGCATAAAATGCATT-TGATG-TTTCAAAATAGCCTGAGTGCATTGATGCATGGCTGG
1 GCATCGATGCATAAAATGCATTCT-ATGTTTTCAAAATAGCCTGAGTGCATCGATGCATAGCTGG
*
8971968 T
65 C
*
8971969 GCATCGATGCATCAAATGCATTCTATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATAG-TA
1 GCATCGATGCATAAAATGCATTCTATGTTTTCA-AAATAGC-CTGAGTGCATCGATGCATAGCT-
*
8972031 TGC
63 GGC
* * *
8972034 GCATCGGTGCATGAAATGCATTCGATGTT
1 GCATCGATGCATAAAATGCATTCTATGTT
8972063 CAATTTATTC
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
64 25 0.31
65 52 0.65
66 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (65 bp):
GCATCGATGCATAAAATGCATTCTATGTTTTCAAAATAGCCTGAGTGCATCGATGCATAGCTGGC
Found at i:8973742 original size:76 final size:81
Alignment explanation
Indices: 8973599--8973746 Score: 191
Period size: 76 Copynumber: 1.9 Consensus size: 81
8973589 ATATAGTAAG
8973599 TAAACATTAAAAGAATGTAATTTAGATTACAACTCTTTTAATTGATATATATAATTTAGAATAAT
1 TAAACATTAAAAGAATGTAATTTAGATTA-AACTCTTTTAATTGATATATATAATTTAGAATAAT
8973664 TAAATAAGTTTTTTAAA
65 TAAATAAGTTTTTTAAA
* * ** *
8973681 TAAACATT-AAAGATTGTAATTTGGATT-ATGTC-TTTAA-TG-TATATTTAATTT-GAATTAAT
1 TAAACATTAAAAGAATGTAATTTAGATTAAACTCTTTTAATTGATATATATAATTTAGAA-TAAT
8973740 TAAATAA
65 TAAATAA
8973747 TATTTTATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
75 3 0.05
76 22 0.37
77 2 0.03
78 5 0.08
79 3 0.05
81 17 0.28
82 8 0.13
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.43
Consensus pattern (81 bp):
TAAACATTAAAAGAATGTAATTTAGATTAAACTCTTTTAATTGATATATATAATTTAGAATAATT
AAATAAGTTTTTTAAA
Found at i:8974821 original size:21 final size:20
Alignment explanation
Indices: 8974797--8974836 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
8974787 AAAAATTGAA
*
8974797 ATGCAGATGCAAGATGCAAAG
1 ATGCAAATGC-AGATGCAAAG
8974818 ATGCAAATGCAGATGCAAA
1 ATGCAAATGCAGATGCAAA
8974837 AATGTTGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.45, C:0.15, G:0.25, T:0.15
Consensus pattern (20 bp):
ATGCAAATGCAGATGCAAAG
Found at i:8978193 original size:18 final size:18
Alignment explanation
Indices: 8978166--8978213 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
8978156 CCGGTTCACT
*
8978166 GGTTCAACCGGTTGAACC
1 GGTTCGACCGGTTGAACC
8978184 GGTTCGACCGGTTGAACC
1 GGTTCGACCGGTTGAACC
8978202 GGTTCGACCGGT
1 GGTTCGACCGGT
8978214 CAGAAGAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (18 bp):
GGTTCGACCGGTTGAACC
Found at i:8978201 original size:27 final size:26
Alignment explanation
Indices: 8978155--8978213 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
8978145 CGGTCATGCT
*
8978155 ACCGGTTCACTGGTTCAACCGGTT-G
1 ACCGGTTCACCGGTTCAACCGGTTCG
*
8978180 AACCGGTTCGACCGGTTGAACCGGTTCG
1 -ACCGGTTC-ACCGGTTCAACCGGTTCG
8978208 ACCGGT
1 ACCGGT
8978214 CAGAAGAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 8 0.28
27 20 0.69
28 1 0.03
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (26 bp):
ACCGGTTCACCGGTTCAACCGGTTCG
Found at i:8978211 original size:9 final size:9
Alignment explanation
Indices: 8978155--8978213 Score: 61
Period size: 9 Copynumber: 6.7 Consensus size: 9
8978145 CGGTCATGCT
8978155 ACCGGTTC-
1 ACCGGTTCG
* *
8978163 ACTGGTTCA
1 ACCGGTTCG
8978172 ACCGGTT-G
1 ACCGGTTCG
8978180 AACCGGTTCG
1 -ACCGGTTCG
8978190 ACCGGTT-G
1 ACCGGTTCG
8978198 AACCGGTTCG
1 -ACCGGTTCG
8978208 ACCGGT
1 ACCGGT
8978214 CAGAAGAACC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
8 8 0.19
9 33 0.77
10 2 0.05
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (9 bp):
ACCGGTTCG
Found at i:8980005 original size:3 final size:3
Alignment explanation
Indices: 8979997--8980056 Score: 61
Period size: 3 Copynumber: 19.7 Consensus size: 3
8979987 ATGTAAACAA
*
8979997 AAT AAT AAT AAAT AAT AAT -AT AAAT AAT AAT AAT AAT AA- CAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
*
8980042 AAT AAAT AAA AAT AA
1 AAT -AAT AAT AAT AA
8980057 GAAAAAAGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
2 3 0.06
3 37 0.77
4 8 0.17
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:8982647 original size:22 final size:22
Alignment explanation
Indices: 8982621--8982686 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
8982611 TAGTTAAAAG
8982621 ATACTTAATTGAGATTAAGATT
1 ATACTTAATTGAGATTAAGATT
*
8982643 ATACTTAGTT-A-A--AAG---
1 ATACTTAATTGAGATTAAGATT
*
8982658 ATACTTTATTGAGATTAAGATT
1 ATACTTAATTGAGATTAAGATT
8982680 ATACTTA
1 ATACTTA
8982687 GTTAAAGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
15 8 0.24
16 1 0.03
17 1 0.03
18 3 0.09
19 3 0.09
20 1 0.03
21 1 0.03
22 15 0.45
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (22 bp):
ATACTTAATTGAGATTAAGATT
Found at i:8982701 original size:37 final size:37
Alignment explanation
Indices: 8982609--8982703 Score: 172
Period size: 37 Copynumber: 2.6 Consensus size: 37
8982599 CGTGTAGAAC
*
8982609 CTTAGTTAAAAGATACTTAATTGAGATTAAGATTATA
1 CTTAGTTAAAAGATACTTTATTGAGATTAAGATTATA
8982646 CTTAGTTAAAAGATACTTTATTGAGATTAAGATTATA
1 CTTAGTTAAAAGATACTTTATTGAGATTAAGATTATA
*
8982683 CTTAGTTAAAGGATACTTTAT
1 CTTAGTTAAAAGATACTTTAT
8982704 CAGGGGCGGA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (37 bp):
CTTAGTTAAAAGATACTTTATTGAGATTAAGATTATA
Found at i:8985151 original size:15 final size:15
Alignment explanation
Indices: 8985128--8985157 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8985118 TATTTCAAAA
8985128 TTATATAAAAAATAT
1 TTATATAAAAAATAT
*
8985143 TTATTTAAAAAATAT
1 TTATATAAAAAATAT
8985158 CAGAAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTATATAAAAAATAT
Found at i:8985363 original size:20 final size:21
Alignment explanation
Indices: 8985340--8985380 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8985330 TATTATATAT
**
8985340 ATATTTATGAATAT-ATAAAA
1 ATATTTAACAATATAATAAAA
8985360 ATATTTAACAATATAATAAAA
1 ATATTTAACAATATAATAAAA
8985381 TAAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATTTAACAATATAATAAAA
Found at i:8986382 original size:16 final size:17
Alignment explanation
Indices: 8986361--8986406 Score: 69
Period size: 16 Copynumber: 2.8 Consensus size: 17
8986351 GGCAGCGGTG
8986361 GAGGCGGCT-GGAGGCA
1 GAGGCGGCTGGGAGGCA
8986377 GAGGCGG-TGGGAGGCA
1 GAGGCGGCTGGGAGGCA
8986393 GAGGCGGCTAGGGA
1 GAGGCGGCT-GGGA
8986407 TTAGGGTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.04
16 21 0.78
17 1 0.04
18 4 0.15
ACGTcount: A:0.20, C:0.15, G:0.59, T:0.07
Consensus pattern (17 bp):
GAGGCGGCTGGGAGGCA
Found at i:8986525 original size:13 final size:12
Alignment explanation
Indices: 8986498--8986535 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
8986488 TTGTAATTTA
8986498 ATATTATTT-AT
1 ATATTATTTAAT
8986509 ATATGTATTTAAT
1 ATAT-TATTTAAT
8986522 ATATATATTTAAT
1 ATAT-TATTTAAT
8986535 A
1 A
8986536 ATAATAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 4 0.17
12 5 0.21
13 15 0.62
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (12 bp):
ATATTATTTAAT
Found at i:8986539 original size:3 final size:3
Alignment explanation
Indices: 8986531--8986622 Score: 148
Period size: 3 Copynumber: 30.7 Consensus size: 3
8986521 TATATATATT
* *
8986531 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
8986579 TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA CAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8986623 TTTAATATGG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8987479 original size:113 final size:113
Alignment explanation
Indices: 8986765--8987972 Score: 1755
Period size: 114 Copynumber: 10.6 Consensus size: 113
8986755 ATTGAATAAA
* * ** * *
8986765 TTCTTC-TCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTGCTGGGGATGATGATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT-CTGGAAAAGATAATCCATC
* * * *
8986829 AAATGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATGAAC
65 AAGTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * * * *
8986878 TTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGTTGATCC
1 TTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAAC-CTTCTCTGGAAAAGATAATCC
* * ** *
8986942 ATCAAATGATGAATTCAAGCAAAATATTGAACAAGTTCTTCTCATTATGAAC
62 ATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
8986994 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
* **
8987059 ATTTGATGAATTCAGAAAAAAGGTTGAACAAATTCTTCTCATTATGAAC
66 A-GTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
8987108 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
* **
8987173 ATTTGATGAATTCAGAAAAAAGGTTGAACAAATTCTTCTCATTATGAAC
66 A-GTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
*
8987222 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACCTTCTCTGGAAAAGATAATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
* *
8987287 ATTTGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAAC
66 A-GTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* *
8987336 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
* *
8987401 AGTGATAGAATT-AGGCAGAAGGTTGAACAAATTCTTCTCATTATGAAT
66 AGTGAT-GAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
8987449 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTTGGAAAAGATAATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC-TGGAAAAGATAATCCATC
* * *
8987514 AAGTGATGAATTCAGGTAACAGGTTGAACAAATTCTTCTCATTATGAAT
65 AAGTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* *
8987563 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
* *
8987628 AGTGATAGAATT-AGGCAGAAGGTTGAACAAATTCTTCTCATTATGAAT
66 AGTGAT-GAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * *
8987676 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTAGAAATG-TCAATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAT-AATCCATC
* * *
8987740 AAGTGATGAATTCAGGTAACAGGTTGAACAAATTCTTCTCATTATGAAT
65 AAGTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* *
8987789 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
* *
8987854 AGTGATAGAATT-AGGCAGAAGGTTGAACAAATTCTTCTCATTATGAAT
66 AGTGAT-GAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* * *
8987902 TTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATG-TCAATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAT-AATCCATC
*
8987966 AAATGAT
65 AAGTGAT
8987973 AGATTTGAAT
Statistics
Matches: 1022, Mismatches: 57, Indels: 32
0.92 0.05 0.03
Matches are distributed among these distances:
112 10 0.01
113 447 0.44
114 459 0.45
116 84 0.08
117 20 0.02
118 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
AGTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAAC
Found at i:8987561 original size:227 final size:226
Alignment explanation
Indices: 8986765--8987972 Score: 1843
Period size: 227 Copynumber: 5.3 Consensus size: 226
8986755 ATTGAATAAA
* * ** * *
8986765 TTCTTC-TCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTGCTGGGGATGATGATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCT-CTGGAAAAGATAATCCATC
* * * *
8986829 AAATGATGAATTCAAGCAAAAGATTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
65 AAATGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
* * * * *
8986894 AGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGTTGATCCATCAAATGAT-GAATT
130 AGAT---GAGTTCTTCTCATTATGAAC-CTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATT
* * ** * *
8986957 CAAGCAAAATATTGAACAAGTTCTTCTCATTATGAAC
191 -AGGCAGAAGGTTGAACAAATTCTTCTCATTATGAAT
8986994 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
* *
8987059 ATTTGATGAATTCAGAAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
66 A-ATGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
* * *
8987124 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCAATTTGAT-GAATTCAG
130 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAA-GTGATAGAATT-AG
** * *
8987188 AAAAAAGGTTGAACAAATTCTTCTCATTATGAAC
193 GCAGAAGGTTGAACAAATTCTTCTCATTATGAAT
*
8987222 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTTATTATGAACCTTCTCTGGAAAAGATAATCCATCA
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
*
8987287 ATTTGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
66 A-ATGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
8987352 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGC
130 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGC
8987417 AGAAGGTTGAACAAATTCTTCTCATTATGAAT
195 AGAAGGTTGAACAAATTCTTCTCATTATGAAT
8987449 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTTGGAAAAGATAATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTC-TGGAAAAGATAATCCATC
* * * *
8987514 AAGTGATGAATTCAGGTAACAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTC
65 AAATGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
8987579 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGC
130 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGC
8987644 AGAAGGTTGAACAAATTCTTCTCATTATGAAT
195 AGAAGGTTGAACAAATTCTTCTCATTATGAAT
* * *
8987676 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTAGAAATG-TCAATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAT-AATCCATC
* * * *
8987740 AAGTGATGAATTCAGGTAACAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTC
65 AAATGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTC
8987805 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGC
130 AGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGC
8987870 AGAAGGTTGAACAAATTCTTCTCATTATGAAT
195 AGAAGGTTGAACAAATTCTTCTCATTATGAAT
* * *
8987902 TTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATG-TCAATCCATC
1 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGAT-AATCCATC
8987966 AAATGAT
65 AAATGAT
8987973 AGATTTGAAT
Statistics
Matches: 928, Mismatches: 44, Indels: 17
0.94 0.04 0.02
Matches are distributed among these distances:
225 1 0.00
226 247 0.27
227 319 0.34
228 241 0.26
229 23 0.02
230 97 0.10
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (226 bp):
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGATAATCCATCA
AATGATGAATTCAGGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
GATGAGTTCTTCTCATTATGAACCTTCTCTGGAAAAGCTGATCCATCAAGTGATAGAATTAGGCA
GAAGGTTGAACAAATTCTTCTCATTATGAAT
Found at i:8988762 original size:83 final size:83
Alignment explanation
Indices: 8988624--8989012 Score: 667
Period size: 83 Copynumber: 4.7 Consensus size: 83
8988614 GTTCTTACCA
* **
8988624 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCATATTCATCTTCCCAAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAAATTCATCTTCTAAAT
*
8988688 TCAATGATTGGTTCTG-CTA
65 TCAATGATTGGTTCTGTC-C
**
8988707 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAACAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
8988772 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
*
8988790 AACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
8988855 CAATGATTGGTTCTGTCC
66 CAATGATTGGTTCTGTCC
*
8988873 AACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
8988938 CAATGATT-GTTCTGTCC
66 CAATGATTGGTTCTGTCC
8988955 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
8989013 TCAGTTAATG
Statistics
Matches: 294, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
82 66 0.22
83 226 0.77
84 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (83 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
CAATGATTGGTTCTGTCC
Found at i:8990132 original size:12 final size:13
Alignment explanation
Indices: 8990109--8990145 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
8990099 GACCCCCATT
8990109 TTTTCTTTTTCTC
1 TTTTCTTTTTCTC
8990122 TTTTCTTTTCTCTC
1 TTTTCTTTT-TCTC
8990136 TTTT-TTTTTC
1 TTTTCTTTTTC
8990146 AAGCATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.09
13 13 0.57
14 8 0.35
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTCTTTTTCTC
Found at i:8990135 original size:14 final size:14
Alignment explanation
Indices: 8990109--8990145 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
8990099 GACCCCCATT
8990109 TTTTCTTTT-TCTC
1 TTTTCTTTTCTCTC
8990122 TTTTCTTTTCTCTC
1 TTTTCTTTTCTCTC
*
8990136 TTTTTTTTTC
1 TTTTCTTTTC
8990146 AAGCATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTCTTTTCTCTC
Found at i:8997426 original size:14 final size:15
Alignment explanation
Indices: 8997407--8997439 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8997397 ATTATTTTTC
8997407 AAATTTTA-ATTAAT
1 AAATTTTATATTAAT
*
8997421 AAATTTTATCTTAAT
1 AAATTTTATATTAAT
8997436 AAAT
1 AAAT
8997440 AAAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATTTTATATTAAT
Found at i:9001336 original size:15 final size:15
Alignment explanation
Indices: 9001313--9001342 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9001303 TATTTCAAAA
9001313 TTATATAAAAAATAT
1 TTATATAAAAAATAT
*
9001328 TTATTTAAAAAATAT
1 TTATATAAAAAATAT
9001343 CAGAAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTATATAAAAAATAT
Found at i:9002545 original size:16 final size:16
Alignment explanation
Indices: 9002524--9002557 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9002514 GGAAACCATT
9002524 GAGGCGGCT-GGAGGCA
1 GAGGCGG-TGGGAGGCA
9002540 GAGGCGGTGGGAGGCA
1 GAGGCGGTGGGAGGCA
9002556 GA
1 GA
9002558 TGCGACTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 16 0.94
ACGTcount: A:0.21, C:0.15, G:0.59, T:0.06
Consensus pattern (16 bp):
GAGGCGGTGGGAGGCA
Found at i:9002686 original size:11 final size:10
Alignment explanation
Indices: 9002656--9002696 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 10
9002646 GGGCTTTGTA
9002656 ATTTAATATT
1 ATTTAATATT
9002666 ATTTATATATGT
1 ATTTA-ATAT-T
9002678 ATTTAATATAT
1 ATTTAATAT-T
9002689 ATTTAATA
1 ATTTAATA
9002697 ATAATAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 5 0.18
11 17 0.61
12 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (10 bp):
ATTTAATATT
Found at i:9002700 original size:3 final size:3
Alignment explanation
Indices: 9002692--9002783 Score: 148
Period size: 3 Copynumber: 30.7 Consensus size: 3
9002682 AATATATATT
* *
9002692 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
9002740 TAA TAA TAA TAA TAA TAA TAA TTA TAA TAA CAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9002784 TTTAATATGG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:9006903 original size:13 final size:13
Alignment explanation
Indices: 9006885--9006909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9006875 CTTGATCGAA
9006885 TAAAAATAAAAAG
1 TAAAAATAAAAAG
9006898 TAAAAATAAAAA
1 TAAAAATAAAAA
9006910 TTTAGCGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAG
Found at i:9009805 original size:18 final size:19
Alignment explanation
Indices: 9009779--9009819 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
9009769 ATTTAAGTAG
*
9009779 TAAAGAAAAATGA-TTAAA
1 TAAAGAAAAATAATTTAAA
*
9009797 TAAATAAAAATAATTTAAA
1 TAAAGAAAAATAATTTAAA
9009816 TAAA
1 TAAA
9009820 AATAAGAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
TAAAGAAAAATAATTTAAA
Found at i:9013254 original size:19 final size:18
Alignment explanation
Indices: 9013230--9013287 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
9013220 TGACGACTGA
9013230 TGCTTCTGGCCGTTGAAAT
1 TGCTTCTGGCCGTTG-AAT
** *
9013249 TGCTTCTGGATGTTGACT
1 TGCTTCTGGCCGTTGAAT
*
9013267 TGCTTTCTGGCCGTTGGAT
1 TGC-TTCTGGCCGTTGAAT
9013286 TG
1 TG
9013288 GGTCAGATCC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
18 5 0.16
19 26 0.84
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.41
Consensus pattern (18 bp):
TGCTTCTGGCCGTTGAAT
Found at i:9013596 original size:35 final size:34
Alignment explanation
Indices: 9013557--9013823 Score: 171
Period size: 34 Copynumber: 7.8 Consensus size: 34
9013547 TTTTCAAAAC
9013557 TATATTATATAGTTTTCAAAATGTTTTAAAAATA
1 TATATTATATAGTTTTCAAAATGTTTTAAAAATA
** * * *
9013591 T-TA-TATA-AGTTTAAAAAACGTTTTTAAAA-C
1 TATATTATATAGTTTTCAAAATGTTTTAAAAATA
* *
9013621 TATATTATATAATTTATTCAAAAATGTTTTTAAAACTA
1 TATATTATAT-AGTT-TTC-AAAATG-TTTTAAAAATA
* * * *
9013659 CATA-TATA-ATTTATTCAAAAATGTTTTTAAAA-C
1 TATATTATATAGTT-TTC-AAAATGTTTTAAAAATA
* *
9013692 TATATTATATAAGTTTTTAAAATGATTTTAAAATTA
1 TATATTATAT-AGTTTTCAAAATG-TTTTAAAAATA
*
9013728 TATGTTATATA-TTTTCTAAAATGTTTTAAAAACTA
1 TATATTATATAGTTTTC-AAAATGTTTTAAAAA-TA
* *
9013763 TAT-GT-TATAGTTTTCAAAAAT-TTTAAAAAACTA
1 TATATTATATAGTTTTC-AAAATGTTTTAAAAA-TA
*
9013796 TATATTACCCATA-TTTTCAAAATGTTTT
1 TATATTA--TATAGTTTTCAAAATGTTTT
9013824 CTTTTTTAAA
Statistics
Matches: 181, Mismatches: 31, Indels: 40
0.72 0.12 0.16
Matches are distributed among these distances:
30 1 0.01
31 20 0.11
32 8 0.04
33 23 0.13
34 45 0.25
35 42 0.23
36 25 0.14
37 14 0.08
38 3 0.02
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (34 bp):
TATATTATATAGTTTTCAAAATGTTTTAAAAATA
Found at i:9013631 original size:34 final size:34
Alignment explanation
Indices: 9013537--9013798 Score: 206
Period size: 35 Copynumber: 7.8 Consensus size: 34
9013527 ATATATTATA
*
9013537 TTTAAAAAA-GTTTTCAAAACTATATTATAT-AG
1 TTTAAAAAATGTTTTTAAAACTATATTATATAAG
**
9013569 TTTTCAAAATG-TTTTAAAA--ATATTATATAAG
1 TTTAAAAAATGTTTTTAAAACTATATTATATAAG
*
9013600 TTTAAAAAACGTTTTTAAAACTATATTATATAA-
1 TTTAAAAAATGTTTTTAAAACTATATTATATAAG
*
9013633 TTTATTCAAAAATGTTTTTAAAACTACA-TATATAA-
1 TTTA---AAAAATGTTTTTAAAACTATATTATATAAG
9013668 TTTATTCAAAAATGTTTTTAAAACTATATTATATAAG
1 TTTA---AAAAATGTTTTTAAAACTATATTATATAAG
** * * *
9013705 TTTTTAAAATGATTTTAAAATTATATGT-TATATAT
1 TTTAAAAAATGTTTTTAAAACTATAT-TATATA-AG
** *
9013740 TTTCTAAAATGTTTTAAAAACTATATGT-TAT-AG
1 TTTAAAAAATGTTTTTAAAACTATAT-TATATAAG
* **
9013773 TTTTCAAAAAT-TTTAAAAAACTATAT
1 -TTTAAAAAATGTTTTTAAAACTATAT
9013799 ATTACCCATA
Statistics
Matches: 196, Mismatches: 21, Indels: 25
0.81 0.09 0.10
Matches are distributed among these distances:
30 9 0.05
31 10 0.05
32 22 0.11
33 20 0.10
34 43 0.22
35 63 0.32
36 26 0.13
37 3 0.02
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (34 bp):
TTTAAAAAATGTTTTTAAAACTATATTATATAAG
Found at i:9013753 original size:69 final size:66
Alignment explanation
Indices: 9013509--9013790 Score: 248
Period size: 69 Copynumber: 4.3 Consensus size: 66
9013499 ATAATACATA
* * *
9013509 TTTCAAAAAT-ATTTTTAAATATA--T-TATA-TTT-AAAAAAGTTTTCAAAACTATATTATATA
1 TTTC-AAAATGATTTTAAAATATATTTATATATTTTCAAAAATGTTTTTAAAACTATATTATATA
9013568 GT
65 GT
* * *
9013570 TTTCAAAATG-TTTTAAAA-ATA-TTATATAAGTTTAAAAAACGTTTTTAAAACTATATTATATA
1 TTTCAAAATGATTTTAAAATATATTTATAT-ATTTTCAAAAATGTTTTTAAAACTATATTATAT-
*
9013632 ATT
64 AGT
* * *
9013635 TATTCAAAAATGTTTTTAAAACTACATATATA-ATTTATTCAAAAATGTTTTTAAAACTATATTA
1 T-TTC-AAAATGATTTTAAAA-TATATTTATATA-TT-TTCAAAAATGTTTTTAAAACTATATTA
9013699 TATAAGT
61 TAT-AGT
* * *
9013706 TTTTAAAATGATTTTAAAATTATATGTTATATATTTTCTAAAATGTTTTAAAAACTATATGT-TA
1 TTTCAAAATGATTTTAAAA-TATAT-TTATATATTTTCAAAAATGTTTTTAAAACTATAT-TATA
9013770 TAGT
63 TAGT
9013774 TTTCAAAA--ATTTTAAAA
1 TTTCAAAATGATTTTAAAA
9013791 AACTATATAT
Statistics
Matches: 185, Mismatches: 18, Indels: 31
0.79 0.08 0.13
Matches are distributed among these distances:
59 3 0.02
60 13 0.07
61 7 0.04
62 1 0.01
63 3 0.02
64 25 0.14
65 3 0.02
66 12 0.06
67 6 0.03
68 18 0.10
69 45 0.24
70 12 0.06
71 37 0.20
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.46
Consensus pattern (66 bp):
TTTCAAAATGATTTTAAAATATATTTATATATTTTCAAAAATGTTTTTAAAACTATATTATATAG
T
Found at i:9013818 original size:69 final size:68
Alignment explanation
Indices: 9013541--9013823 Score: 219
Period size: 69 Copynumber: 4.1 Consensus size: 68
9013531 ATTATATTTA
* * * * *
9013541 AAAAAGTTTTCAAAACTATATTATAT-AGTTTTCAAAATG-TTTTAAAAATAT-TA-TATA-AGT
1 AAAATGTTTTAAAAACTATATTATATAAGTTTTCAAAA-GATTTTAAAACTATATATTACATATT
**
9013601 TTAA
65 TTCT
* * * * *
9013605 AAAACGTTTTTAAAACTATATTATATAATTTATTCAAAAATGTTTTTAAAACTACATATATA-AT
1 AAAATGTTTTAAAAACTATATTATATAAGTT-TTC-AAAA-GATTTTAAAACTATATAT-TACAT
*
9013669 -TTATTCA
62 ATT-TTCT
* * * * *
9013676 AAAATGTTTTTAAAACTATATTATATAAGTTTTTAAAATGATTTTAAAATTATATGTTATATATT
1 AAAATGTTTTAAAAACTATATTATATAAGTTTTCAAAA-GATTTTAAAACTATATATTACATATT
9013741 TTCT
65 TTCT
9013745 AAAATGTTTTAAAAACTATATGT-TAT-AGTTTTCAAAA-ATTTTAAAAAACTATATATTACCCA
1 AAAATGTTTTAAAAACTATAT-TATATAAGTTTTCAAAAGATTTT--AAAACTATATATTA--CA
9013807 TATTTTC-
61 TATTTTCT
9013814 AAAATGTTTT
1 AAAATGTTTT
9013824 CTTTTTTAAA
Statistics
Matches: 183, Mismatches: 20, Indels: 27
0.80 0.09 0.12
Matches are distributed among these distances:
64 24 0.13
65 3 0.02
66 8 0.04
67 6 0.03
68 34 0.19
69 59 0.32
70 15 0.08
71 34 0.19
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (68 bp):
AAAATGTTTTAAAAACTATATTATATAAGTTTTCAAAAGATTTTAAAACTATATATTACATATTT
TCT
Found at i:9015634 original size:655 final size:655
Alignment explanation
Indices: 9014467--9015740 Score: 2144
Period size: 655 Copynumber: 1.9 Consensus size: 655
9014457 TAAGTTGAAT
9014467 ATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
9014532 TTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
66 TTGGAGCTGAGCGGAGTCGAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
9014597 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGTCTTTGGCAGATAGCCC
130 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGTCTTTGGCAGATAGCCC
9014662 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
195 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
* * * *
9014727 TTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAG
260 TTTTGGTCACAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCCTCGAAGCTGAG
*
9014792 TAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
325 TAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG
* *
9014857 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAG
390 CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGACTTAAG
* * * ** *
9014922 TTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAG
455 TTATACTGCAAATGATGTGCCCTCAAAGCTGAACGTAATCGAACTCGAGGGTCTTTGGCAGATAG
9014987 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
520 CCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAG
9015052 GTCTTGGT-CACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTG
585 GTCTTGGTGCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTG
9015116 AGTGTA
650 AGTGTA
** *
9015122 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
*
9015187 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
66 TTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
9015251 TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCC
131 TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTC-GGGGTCTTTGGCAGATAGCCC
*
9015316 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAGGGTC
195 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
* * *
9015381 -TTTGGTTAGCAGATAACCCTTCTTGACTTAAGTTATACTGCAAATGATGTGCCTTC-AAGCTGA
260 TTTTGGTCA-CAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCCTCGAAGCTG-
* * *
9015444 ACGTAGTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTTGACTTAAGCTATTCTGCAAATGAT
323 A-GTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGAT
* * *
9015509 GTGCCTTGGAGCTGAGCGTAGTCGAACTCGAGGGTC-TTTGGTTAGCAGATAACCCTTCTTGACT
387 GTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCA-CAGATAACCCTTCTAGACT
* *
9015573 TAAGTTATACTGCAAATGATGTGCCTTCAAAGCTGAACGTAGTCGAACTCGAGGGTCTTTGGCAG
451 TAAGTTATACTGCAAATGATGTGCCCTCAAAGCTGAACGTAATCGAACTCGAGGGTCTTTGGCAG
* *
9015638 ATAGCCCTTCTTGACTTAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
516 ATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC
** * *
9015703 GAAGGTCTTGGTGGGCAGATAGCCCTTCTGGCCTTGAG
581 GAAGGTCTTGGTGCACAGATAACCCTTCTAGCCTTGAG
9015741 CTAAGCTGCA
Statistics
Matches: 578, Mismatches: 35, Indels: 11
0.93 0.06 0.02
Matches are distributed among these distances:
653 89 0.15
654 134 0.23
655 334 0.58
656 21 0.04
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (655 bp):
ATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
TTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGTCTTTGGCAGATAGCCCT
TCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCT
TTTGGTCACAGATAACCCTTCTAGACTTAAGTTATACTGCAAATGATGTGCCCTCGAAGCTGAGT
AATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGC
CTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGACTTAAGT
TATACTGCAAATGATGTGCCCTCAAAGCTGAACGTAATCGAACTCGAGGGTCTTTGGCAGATAGC
CCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGG
TCTTGGTGCACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGA
GTGTA
Found at i:9015753 original size:164 final size:164
Alignment explanation
Indices: 9014467--9015740 Score: 2112
Period size: 163 Copynumber: 7.8 Consensus size: 164
9014457 TAAGTTGAAT
** *
9014467 ATCGAACTCGAAGGTCTTTAGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
*
9014532 TTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
9014597 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
130 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
9014632 ATCGAACTC-GGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
9014696 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
9014761 ATGCTGTAAATGATGTGCCCTCGAAGCTGA--GTA
130 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
9014794 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
9014859 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTCACAGATAACCCTTCTAGCCTTGAGTT
9014924 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
130 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
9014959 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
9015024 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
9015088 TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
131 TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
9015122 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
9015187 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
9015251 TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
131 TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
9015285 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
* * * * *
9015350 TTGGAGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGTTAGCAGATAACCCTTCTTGACTTAAGTT
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCA-CAGATAACCCTTCTAGCCTTGAGTT
* * * **
9015415 ATACTGCAAATGATGTGCCTTC-AAGCTGAACGTA
130 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
* * * *
9015449 GTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTTGACTTAAGCTATTCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
* * * * *
9015514 TTGGAGCTGAGCGTAGTCGAACTCGAGGGTCTTTGGTTAGCAGATAACCCTTCTTGACTTAAGTT
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCA-CAGATAACCCTTCTAGCCTTGAGTT
* * * * **
9015579 ATACTGCAAATGATGTGCCTTCAAAGCTGAACGTA
130 ATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
* * * *
9015614 GTCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTTGACTTAAGCTATTCTGCAAATGATGTGCC
1 ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
** * *
9015679 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTGGTGGGCAGATAGCCCTTCTGGCCTTGAG
66 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGT-CACAGATAACCCTTCTAGCCTTGAG
9015741 CTAAGCTGCA
Statistics
Matches: 1077, Mismatches: 25, Indels: 15
0.96 0.02 0.01
Matches are distributed among these distances:
162 12 0.01
163 475 0.44
164 334 0.31
165 256 0.24
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (164 bp):
ATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTA
TGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTA
Found at i:9020977 original size:16 final size:16
Alignment explanation
Indices: 9020944--9020986 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
9020934 AAATCCCGAA
*
9020944 AAAAATGATAAAACAG
1 AAAAATAATAAAACAG
* *
9020960 AAAAATAATGAAATAG
1 AAAAATAATAAAACAG
*
9020976 AATAATAATAA
1 AAAAATAATAA
9020987 TAATAGTTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.19
Consensus pattern (16 bp):
AAAAATAATAAAACAG
Found at i:9021813 original size:19 final size:18
Alignment explanation
Indices: 9021789--9021846 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
9021779 TGACGACTGA
9021789 TGCTTCTGGCCGTTGAAAT
1 TGCTTCTGGCCGTTG-AAT
** *
9021808 TGCTTCTGGATGTTGACT
1 TGCTTCTGGCCGTTGAAT
*
9021826 TGCTTTCTGGCCGTTGGAT
1 TGC-TTCTGGCCGTTGAAT
9021845 TG
1 TG
9021847 GGTCAGATCC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
18 5 0.16
19 26 0.84
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.41
Consensus pattern (18 bp):
TGCTTCTGGCCGTTGAAT
Found at i:9022014 original size:12 final size:12
Alignment explanation
Indices: 9021999--9022024 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9021989 AAAAAAACAT
9021999 AAAAAGAAAATA
1 AAAAAGAAAATA
9022011 AAAAAGAAAATA
1 AAAAAGAAAATA
9022023 AA
1 AA
9022025 TAATAATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATA
Found at i:9022195 original size:35 final size:34
Alignment explanation
Indices: 9022092--9022376 Score: 239
Period size: 35 Copynumber: 8.3 Consensus size: 34
9022082 ATATTATATT
* * *
9022092 AAAAAAGTTTTCAAAACTATATA-TATAGTTTTC
1 AAAAATGTTTTTAAAACTATATATTATAATTTTC
* *
9022125 -AAAATG-TTTTAAAAATAT-TA-TATAAGTTTTA
1 AAAAATGTTTTTAAAACTATATATTATAA-TTTTC
*
9022156 AAAAACGTTTTTAAAACTATATATTATAATTTATC
1 AAAAATGTTTTTAAAACTATATATTATAATTT-TC
*
9022191 AAAAATGTTTTTAAAACTACATATTATAATTTATTC
1 AAAAATGTTTTTAAAACTATATATTATAA-TT-TTC
9022227 -AAAATGTTTTT-AAACTATATATTATATAAGTTTT-
1 AAAAATGTTTTTAAAACTATATA-T-TATAA-TTTTC
* * *
9022261 -AAAATGATTTTAAAATTATATGTTATATATTTTC
1 AAAAATGTTTTTAAAACTATATATTATA-ATTTTC
* * *
9022295 TAAAATGTTTTAAAAACTATATGTTATATAGTTTTC
1 AAAAATGTTTTTAAAACTATATATTATA-A-TTTTC
* ** *
9022331 AAAAATATTTAAAAAACTATATATTACCATATTTTC
1 AAAAATGTTTTTAAAACTATATATTA-TA-ATTTTC
9022367 -AAAATGTTTT
1 AAAAATGTTTT
9022377 CTTTTTTAAA
Statistics
Matches: 211, Mismatches: 25, Indels: 30
0.79 0.09 0.11
Matches are distributed among these distances:
30 6 0.03
31 14 0.07
32 10 0.05
33 19 0.09
34 26 0.12
35 89 0.42
36 43 0.20
37 4 0.02
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (34 bp):
AAAAATGTTTTTAAAACTATATATTATAATTTTC
Found at i:9022252 original size:69 final size:68
Alignment explanation
Indices: 9022105--9022376 Score: 240
Period size: 69 Copynumber: 4.0 Consensus size: 68
9022095 AAAGTTTTCA
* ** *
9022105 AAACTATATA-TAT-AGTTTTCAAAATG-TTTTAAAAATAT-TA-TATAAGT-TTTAAAAAACGT
1 AAACTATATATTATAAGTTTTCAAAATGTTTTTAAAACTATATATTATAA-TATTTTCAAAATGT
9022164 TTTT
65 TTTT
*
9022168 AAAACTATATATTATAA-TTTATCAAAAATGTTTTTAAAACTACATATTATAAT-TTATTCAAAA
1 -AAACTATATATTATAAGTTT-TC-AAAATGTTTTTAAAACTATATATTATAATATT-TTCAAAA
9022231 TGTTTTT
62 TGTTTTT
* * *
9022238 AAACTATATATTATATAAGTTTT-AAAATGATTTTAAAATTATATGTTAT-ATATTTTCTAAAAT
1 AAACTATATA-T-TATAAGTTTTCAAAATGTTTTTAAAACTATATATTATAATATTTTC-AAAAT
*
9022301 GTTTTAA
63 GTTTT-T
* * ** **
9022308 AAACTATATGTTATATAGTTTTCAAAAATATTTAAAAAACTATATATTACCATATTTTCAAAATG
1 AAACTATATATTATA-AGTTTTC-AAAATGTTTTTAAAACTATATATTATAATATTTTCAAAATG
9022373 TTTT
64 TTTT
9022377 CTTTTTTAAA
Statistics
Matches: 172, Mismatches: 18, Indels: 29
0.79 0.08 0.13
Matches are distributed among these distances:
64 10 0.06
65 6 0.03
66 3 0.02
67 6 0.03
68 19 0.11
69 56 0.33
70 26 0.15
71 35 0.20
72 11 0.06
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.46
Consensus pattern (68 bp):
AAACTATATATTATAAGTTTTCAAAATGTTTTTAAAACTATATATTATAATATTTTCAAAATGTT
TTT
Found at i:9022300 original size:104 final size:100
Alignment explanation
Indices: 9022092--9022334 Score: 287
Period size: 104 Copynumber: 2.4 Consensus size: 100
9022082 ATATTATATT
* *
9022092 AAAAAAGTTTTCAAAACTATATA-TAT-AGTTTTCAAAATGTTTTAAAAATATTATATAAGTTTT
1 AAAAATGTTTTAAAAACTATATATTATAAGTTTTCAAAATGTTTTAAAAATATTATATAAGTTTT
*
9022155 AAAAAACGTTTTTAAAACTATATATTATAATTTATC
66 -AAAAACGATTTTAAAACTATATATTATAATTTATC
* * *
9022191 AAAAATGTTTTTAAAACTACATATTATAATTTATTCAAAATGTTTTTAAACTATATATTATATAA
1 AAAAATGTTTTAAAAACTATATATTATAAGTT-TTCAAAATG-TTTTAAA--A-ATATTATATAA
* * *
9022256 GTTTT-AAAATGATTTTAAAATTATATGTTATATATTT-TC
61 GTTTTAAAAACGATTTTAAAACTATATATTATA-ATTTATC
* *
9022295 TAAAATGTTTTAAAAACTATATGTTATATAGTTTTCAAAA
1 AAAAATGTTTTAAAAACTATATATTATA-AGTTTTCAAAA
9022335 ATATTTAAAA
Statistics
Matches: 122, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
99 20 0.16
100 3 0.02
101 3 0.02
102 9 0.07
103 7 0.06
104 56 0.46
105 8 0.07
106 16 0.13
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.45
Consensus pattern (100 bp):
AAAAATGTTTTAAAAACTATATATTATAAGTTTTCAAAATGTTTTAAAAATATTATATAAGTTTT
AAAAACGATTTTAAAACTATATATTATAATTTATC
Found at i:9025189 original size:2 final size:2
Alignment explanation
Indices: 9025182--9025214 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
9025172 TTGTTGTACA
9025182 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9025215 CCCTTCATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9025421 original size:81 final size:81
Alignment explanation
Indices: 9025334--9025670 Score: 444
Period size: 81 Copynumber: 4.2 Consensus size: 81
9025324 CATAGCTAGT
* ** * * * *
9025334 CCATTATTCTTTTACTCAACAGTGCTTAACCATTCAACTAACCGGCATAATTGATACCTTTCTGC
1 CCATTATCCTTTTACTCAACAGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
*
9025399 CAATTACACAGTTAGG
66 CAATTGCACAGTTAGG
* * * * *
9025415 CTATTATCCTTTTACTCAAC-GATAGTTAACCGTTCATCTAATTGACATAATTGACACCTTTCTA
1 CCATTATCCTTTTACTCAACAG-TATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTG
9025479 CCAATTGCACAGTTAGG
65 CCAATTGCACAGTTAGG
* **
9025496 CCATCATCCTTTTACTCAATGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
1 CCATTATCCTTTTACTCAACAGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
*
9025561 CTATTGCACAGTTAGG
66 CAATTGCACAGTTAGG
* ** *
9025577 CCATCATCCTTTTACTCAACAGTATTTAACCGTTCATCTAACTGAG-ATAATTGACATATTTATG
1 CCATTATCCTTTTACTCAACAGTATTTAACCGTTCATCTAACTG-GCATAATTGACACCTTTCTG
*
9025641 CCAATTGCACAGTTAGA
65 CCAATTGCACAGTTAGG
9025658 CCATTATCCTTTT
1 CCATTATCCTTTT
9025671 TATTTTGGAC
Statistics
Matches: 225, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.00
81 222 0.99
82 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (81 bp):
CCATTATCCTTTTACTCAACAGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGC
CAATTGCACAGTTAGG
Found at i:9025948 original size:54 final size:54
Alignment explanation
Indices: 9025810--9026421 Score: 843
Period size: 54 Copynumber: 11.3 Consensus size: 54
9025800 ATTTATTAAC
* * *
9025810 ATGCACA-TGTAGTGCATATACGG-TAGTTCATCAACTCATGATGAATTCTGT-GA
1 ATGCACACT-TAGTGCCTGTACGGTTA-TTCATCAACTCATGATGAATTCCGTGGA
* * *
9025863 ATTTGCACACATAGTGCCTGTACGGTCATTCATCAACTCATGATGAATTCCGTGAA
1 A--TGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* *
9025919 ATGCACACTTAGTGCTTGTACGGTTATTCATCAACTCATGATAAATTCCGTGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* ***
9025973 ATGCACACTTAGTGCCTGTACGGCTATTCATCAACTCATGATGAATTTTTTGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* * *
9026027 ATGCACACTTAGTACCCTGTACGGTTATTCATCAATTCATGATGAATTCCATGGA
1 ATGCACACTTAGT-GCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* * * * *
9026082 ATGCACAGTTAATGCATGTACGGTTATTCAACAACTCATGATGAATTCCATGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* * *
9026136 ATGCACACTTAGTGCCTGTTCGGTTATTCATCAACTCATGATGAATTTCATGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* **
9026190 ATGCACACTTAGTGCCTATACGGTTATTCATCAACTCATGATGAATTATGTGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* * *
9026244 ATGCACACTCAGTGCTTGTACGGTTATTCATCAACTCATGATGAATTTCGTGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* *
9026298 ATGCACACTTAGTGCCTGTACGATTATTCATCAACTCATGACGAATTCCGTGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
* * * *
9026352 ATGCACACTTAGTGTCTGTACGGTTATTAATCAACTCATGATGAATTTCATGGA
1 ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
9026406 ATGCACACTTAGTGCC
1 ATGCACACTTAGTGCC
9026422 ATTTGGTAAT
Statistics
Matches: 496, Mismatches: 57, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.00
54 404 0.81
55 88 0.18
56 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (54 bp):
ATGCACACTTAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGA
Found at i:9026866 original size:95 final size:95
Alignment explanation
Indices: 9026703--9026928 Score: 258
Period size: 95 Copynumber: 2.4 Consensus size: 95
9026693 CCAAACTCAA
* * * * * ** *
9026703 TAGTATCGATACTAC-TACCCTGGTACCGATACTTCTATACTATGGTACTGATACCCCCTTACGG
1 TAGTATCGATAC-CCTTACCATGGTATCGATACTACCATACTATGGTACCAATACCCCCATACGG
*
9026767 TATCGATACCA-ATTTTAGGTTCGAAGTTTCC
65 TATCGATA-CAGATTTTAGGTTCGAAGTTGCC
* *
9026798 TAGTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCAATGCCCCCATCCGGT
1 TAGTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCAATACCCCCATACGGT
* *
9026863 ATCGATACAGATTTTAGGTTCGATGTTGCT
66 ATCGATACAGATTTTAGGTTCGAAGTTGCC
* * **
9026893 TGGTATCGATACCCTTACAATCAATATCGATACTAC
1 TAGTATCGATACCCTTACCAT-GGTATCGATACTAC
9026929 TAAGCTAATT
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
94 3 0.03
95 96 0.86
96 12 0.11
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (95 bp):
TAGTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCAATACCCCCATACGGT
ATCGATACAGATTTTAGGTTCGAAGTTGCC
Found at i:9029254 original size:20 final size:19
Alignment explanation
Indices: 9029218--9029266 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
9029208 TCAAAATCAA
* *
9029218 TTTTCAAAATTTCATTTTTC
1 TTTTCAAAA-TCCATTTTGC
9029238 TTTTCAAAATCCAATTTTGC
1 TTTTCAAAATCC-ATTTTGC
9029258 -TTTCAAAAT
1 TTTTCAAAAT
9029267 AAAATCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 11 0.42
20 15 0.58
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTTCAAAATCCATTTTGC
Found at i:9032829 original size:17 final size:17
Alignment explanation
Indices: 9032809--9032868 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
9032799 AGGGAAGTAG
9032809 TTCATTAATTAAACTAA
1 TTCATTAATTAAACTAA
* * *
9032826 TTCATTCATCAAACTAG
1 TTCATTAATTAAACTAA
*
9032843 TTCATTTATTAAACTAA
1 TTCATTAATTAAACTAA
*
9032860 CTC-TTAATT
1 TTCATTAATT
9032869 GTTTCATGCA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
16 5 0.14
17 30 0.86
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (17 bp):
TTCATTAATTAAACTAA
Found at i:9039077 original size:17 final size:16
Alignment explanation
Indices: 9039057--9039108 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 16
9039047 TTTAGGGAAG
9039057 TAGTTCATTAATTAAAC
1 TAGTTCATTAA-TAAAC
*
9039074 TAGTTCATTCATAACAC
1 TAGTTCATTAATAA-AC
*
9039091 TAGTTCATTTATAAAC
1 TAGTTCATTAATAAAC
9039107 TA
1 TA
9039109 ACTCTTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
16 7 0.22
17 25 0.78
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.40
Consensus pattern (16 bp):
TAGTTCATTAATAAAC
Found at i:9040339 original size:21 final size:21
Alignment explanation
Indices: 9040290--9040341 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
9040280 GTAGAACGCC
* **
9040290 ACCTAAAATGTTATTTTTTCT
1 ACCTAAAATGTTAATTTCGCT
**
9040311 ACAAAAAATGTTAATTTCGCT
1 ACCTAAAATGTTAATTTCGCT
9040332 ACCTAAAATG
1 ACCTAAAATG
9040342 AATATTCCCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (21 bp):
ACCTAAAATGTTAATTTCGCT
Found at i:9040979 original size:64 final size:63
Alignment explanation
Indices: 9040853--9041006 Score: 238
Period size: 64 Copynumber: 2.4 Consensus size: 63
9040843 ACTCACCATT
** * *
9040853 TCGAATGCATTTTATGCATCGATGCACTTCCATGCATCGATGCACTCAGGTTTTTATTAAACA
1 TCGAATGCATTTTATGCATCGATGCACGACCATGCATCGATGCACTCAGGTTGTTATGAAACA
*
9040916 TCGAATGCATTTTATGCATTGATGCACAGACCATGCATCGATGCACTCAGGCTTGTT-TGAAACA
1 TCGAATGCATTTTATGCATCGATGCAC-GACCATGCATCGATGCACTCAGG-TTGTTATGAAACA
9040980 TCGAATGCATTTTATGCATCGATGCAC
1 TCGAATGCATTTTATGCATCGATGCAC
9041007 CCTTAGTGCA
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
63 26 0.31
64 53 0.64
65 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (63 bp):
TCGAATGCATTTTATGCATCGATGCACGACCATGCATCGATGCACTCAGGTTGTTATGAAACA
Found at i:9041017 original size:64 final size:63
Alignment explanation
Indices: 9040853--9041026 Score: 214
Period size: 64 Copynumber: 2.7 Consensus size: 63
9040843 ACTCACCATT
* *
9040853 TCGAATGCATTTTATGCATCGATGCA--CTTCCATGCATCGATGCACTCAGGTTTTTATTAAACA
1 TCGAATGCATTTTATGCATCGATGCACCCTT--ATGCATCGATGCACTCAGGTTGTTATGAAACA
*
9040916 TCGAATGCATTTTATGCATTGATGCACAGACC--ATGCATCGATGCACTCAGGCTTGTT-TGAAA
1 TCGAATGCATTTTATGCATCGATGCAC---CCTTATGCATCGATGCACTCAGG-TTGTTATGAAA
9040978 CA
62 CA
*
9040980 TCGAATGCATTTTATGCATCGATGCACCCTTAGTGCATTGATGCACT
1 TCGAATGCATTTTATGCATCGATGCACCCTTA-TGCATCGATGCACT
9041027 AAGGGTTCCA
Statistics
Matches: 97, Mismatches: 5, Indels: 17
0.82 0.04 0.14
Matches are distributed among these distances:
61 2 0.02
63 26 0.27
64 64 0.66
65 4 0.04
68 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (63 bp):
TCGAATGCATTTTATGCATCGATGCACCCTTATGCATCGATGCACTCAGGTTGTTATGAAACA
Found at i:9047201 original size:21 final size:21
Alignment explanation
Indices: 9047175--9047216 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
9047165 CCAGAATGGG
*
9047175 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
9047196 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
9047217 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:9047364 original size:19 final size:18
Alignment explanation
Indices: 9047322--9047369 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
9047312 GAGCCTTGGG
*
9047322 TTACTGTTCAAACAGTGA
1 TTACTGTTCAAACAGTAA
*
9047340 TATACTGTTCAAATAGTAAA
1 T-TACTGTTCAAACAGT-AA
*
9047360 TTACTATTCA
1 TTACTGTTCA
9047370 TAAAAACATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 22 0.88
20 2 0.08
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (18 bp):
TTACTGTTCAAACAGTAA
Found at i:9047467 original size:29 final size:31
Alignment explanation
Indices: 9047435--9047493 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
9047425 AAATTTTGAA
* *
9047435 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAACTCAATTCAAGTCCAAAAACCATTTTG
9047464 TAAACTCAATTCAAGTCCAAAAACCATTTT
1 TAAACTCAATTCAAGTCCAAAAACCATTTT
9047494 TCCTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 10 0.38
30 10 0.38
31 6 0.23
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34
Consensus pattern (31 bp):
TAAACTCAATTCAAGTCCAAAAACCATTTTG
Found at i:9047602 original size:23 final size:22
Alignment explanation
Indices: 9047530--9047610 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
9047520 GTTCAACATA
9047530 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCAT-CC-TTGAAT
* *
9047554 GTGCATCGATACAT-CATGAA-
1 GTGCATCGATGCATCCTTGAAT
*
9047574 GATGCACCGATGCACTCCTTGAAT
1 G-TGCATCGATGCA-TCCTTGAAT
*
9047598 GTGCATTGATGCA
1 GTGCATCGATGCA
9047611 CAATGCCATG
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
20 1 0.02
21 14 0.30
22 2 0.04
23 15 0.33
24 14 0.30
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (22 bp):
GTGCATCGATGCATCCTTGAAT
Found at i:9049172 original size:27 final size:27
Alignment explanation
Indices: 9049142--9049196 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
9049132 ACTTTGGGAA
* *
9049142 CTAGTTCTTCACGAGCTCCTCCTGCAC
1 CTAGTTCTTCACGAGCTCCACCTCCAC
* *
9049169 CTAGTTCTTCTCGTGCTCCACCTCCAC
1 CTAGTTCTTCACGAGCTCCACCTCCAC
9049196 C
1 C
9049197 GGCACCGGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.44, G:0.13, T:0.31
Consensus pattern (27 bp):
CTAGTTCTTCACGAGCTCCACCTCCAC
Found at i:9050312 original size:19 final size:18
Alignment explanation
Indices: 9050281--9050316 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
9050271 TCAAAGGCAT
*
9050281 TTTATGCATCGATGCACC
1 TTTATGCACCGATGCACC
9050299 TTTAGTGCACCGATGCAC
1 TTTA-TGCACCGATGCAC
9050317 TAAGGGTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (18 bp):
TTTATGCACCGATGCACC
Found at i:9052970 original size:9 final size:9
Alignment explanation
Indices: 9052958--9052982 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
9052948 TTTAAATACC
9052958 TTGTGTGTG
1 TTGTGTGTG
9052967 TTGTGTGTG
1 TTGTGTGTG
9052976 TTGTGTG
1 TTGTGTG
9052983 AGTACGTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.44, T:0.56
Consensus pattern (9 bp):
TTGTGTGTG
Found at i:9053657 original size:14 final size:13
Alignment explanation
Indices: 9053633--9053666 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
9053623 TATAGTTGAA
9053633 CAGTCTTCATATG
1 CAGTCTTCATATG
9053646 CAGTCATTCATATG
1 CAGTC-TTCATATG
9053660 CACGTCT
1 CA-GTCT
9053667 GTAAAGGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 11 0.58
15 3 0.16
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:9066368 original size:19 final size:20
Alignment explanation
Indices: 9066326--9066367 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
9066316 AACCAGATTG
*
9066326 CCCAGATGGTACCGGTACCC
1 CCCAGATGGTACCGATACCC
*
9066346 CCCAGATGGTACTGATACCC
1 CCCAGATGGTACCGATACCC
9066366 CC
1 CC
9066368 ATGCCAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.40, G:0.21, T:0.17
Consensus pattern (20 bp):
CCCAGATGGTACCGATACCC
Found at i:9076699 original size:54 final size:55
Alignment explanation
Indices: 9075771--9076674 Score: 1157
Period size: 54 Copynumber: 16.8 Consensus size: 55
9075761 TGTGCTATAA
* * *
9075771 GCACTATGTGTGCAATCTATG-GAATTCATCATGAGTTGATGAACAACCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * * *
9075825 CCACTAT-TATGCAACCCAC-AAAATTTATCATGAGTTGATGAACAACCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
9075878 GCACTATGTGTGCAACCCACGA-AATTCATCATGAGTTGATGAACAACCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * *
9075932 GCACTATGTGTGCAACCCAC-AGAATTCATCATGACTTGATGAACAACTGTACAG
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
** * *
9075986 GCACTACATGTGCAACCCACG-GAATTCATCATGAGTTGTTGAACAACCGTACAA
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* *
9076040 GCACTATGTGTGTAACCCAC-AGAATTCATCATGAGTTGATGAACAATCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* *
9076094 GCACTATGTATGCAACCCAC-ATAATTCATCAT--GTTGATGAACAACCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * *
9076146 GCGCTATGTGTGCAACCCA-TAGAATTCCTCATGAGTTGATGAACAACCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * * * *
9076200 GCACTATGTGTGCTACCCACGA-AATTCAACATAAGTTGATGAACAACCATACAA
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * * * * * * *
9076254 GAACTATCTGTACAACCCAC-ATAACTCATCTTGAGTTGATGAACAACCGTATAG
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * *
9076308 GCACTATGTGTGCAACCCA-TAGAATTCATCAGGAGTTGATGAACAACCGTACAA
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * * *
9076362 GCACTATGTGTGCAACCCAC-TGAATTCATCATGAGTT-ATTGAATAACCGTGCAA
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGA-TGAACAACCGTACAT
* * *
9076416 GCACTATGTGTGCAACCCACGA-AATTCATCAAGAGTTGATGAACAGCCGTACAC
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
*
9076470 GCACTATGTGTGCAACCCA-TAGAATTCATCATGAGTTGATGAACAACCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * *
9076524 GCACTATGTGTGCAACCCAC-ATAATTCTTCATGAGTTGATAAACAACCGTACAT
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* * * * *
9076578 GCACTATGTGTACAGCCCA-TAGAATTCATCTTGAGTTGATGAACAACCGTACAG
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
* *
9076632 GCAATATGTGTGCAACCCACGA-AATTCATCATGTGTTGATGAA
1 GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAA
9076675 TGACCGTATA
Statistics
Matches: 739, Mismatches: 91, Indels: 40
0.85 0.10 0.05
Matches are distributed among these distances:
52 46 0.06
53 49 0.07
54 640 0.87
55 4 0.01
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (55 bp):
GCACTATGTGTGCAACCCACGAGAATTCATCATGAGTTGATGAACAACCGTACAT
Found at i:9078859 original size:2 final size:2
Alignment explanation
Indices: 9078852--9078888 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
9078842 GATGTCATAA
9078852 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9078889 GTTTTTGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9080624 original size:23 final size:20
Alignment explanation
Indices: 9080570--9080633 Score: 119
Period size: 20 Copynumber: 3.2 Consensus size: 20
9080560 AGAAGTATCA
*
9080570 ATACCAGGGTAGTAGTACCG
1 ATACGAGGGTAGTAGTACCG
9080590 ATACGAGGGTAGTAGTACCG
1 ATACGAGGGTAGTAGTACCG
9080610 ATACGAGGGTAGTAGTACCG
1 ATACGAGGGTAGTAGTACCG
9080630 ATAC
1 ATAC
9080634 TAATAACCTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.20
Consensus pattern (20 bp):
ATACGAGGGTAGTAGTACCG
Found at i:9082053 original size:21 final size:20
Alignment explanation
Indices: 9082005--9082176 Score: 71
Period size: 21 Copynumber: 8.0 Consensus size: 20
9081995 TTCTCTTGCT
* * * *
9082005 AAAAGGATAGATTCCTTAGC
1 AAAAGGATCGATCCCTTTGA
*
9082025 AAATGGATCGATCCCTTTGA
1 AAAAGGATCGATCCCTTTGA
* * *
9082045 CTAGAGGATCGATCCCCTTGA
1 -AAAAGGATCGATCCCTTTGA
9082066 AAAAGGATCGAT-CCTTTGGACA
1 AAAAGGATCGATCCCTTT-G--A
9082088 ACAATGAGTTTGGGATCGATCCC-TTGA
1 A-AA--A-----GGATCGATCCCTTTGA
* *
9082115 CAAAAGGATCAATCCC-TCGA
1 -AAAAGGATCGATCCCTTTGA
**
9082135 GGAAAAGGATCGATCCCTTCCCA
1 --AAAAGGATCGATCCCTT-TGA
9082158 AAAAGGATCGATCCCTTTG
1 AAAAGGATCGATCCCTTTG
9082177 GTATAACAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 34
0.69 0.11 0.20
Matches are distributed among these distances:
19 4 0.03
20 39 0.34
21 47 0.41
22 3 0.03
23 4 0.03
25 2 0.02
27 3 0.03
28 1 0.01
29 1 0.01
30 10 0.09
31 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.24
Consensus pattern (20 bp):
AAAAGGATCGATCCCTTTGA
Found at i:9082129 original size:20 final size:20
Alignment explanation
Indices: 9082100--9082174 Score: 87
Period size: 21 Copynumber: 3.6 Consensus size: 20
9082090 AATGAGTTTG
9082100 GGATCGATCCCTTGACAAAA
1 GGATCGATCCCTTGACAAAA
* * *
9082120 GGATCAATCCCTCGAGGAAAA
1 GGATCGATCCCTTGA-CAAAA
**
9082141 GGATCGATCCCTTCCCAAAAA
1 GGATCGATCCCTTGAC-AAAA
9082162 GGATCGATCCCTT
1 GGATCGATCCCTT
9082175 TGGTATAACA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
20 13 0.29
21 32 0.71
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (20 bp):
GGATCGATCCCTTGACAAAA
Found at i:9082233 original size:21 final size:21
Alignment explanation
Indices: 9082194--9082233 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9082184 AATCAAAATA
*
9082194 TTTGAAAAAGGATCGATCCCT
1 TTTGAAAAAGGATCAATCCCT
* *
9082215 TTTGTAAAAGGATTAATCC
1 TTTGAAAAAGGATCAATCC
9082234 ATTGTGCTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (21 bp):
TTTGAAAAAGGATCAATCCCT
Found at i:9084715 original size:20 final size:19
Alignment explanation
Indices: 9084678--9084719 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
9084668 TTTCTGGCTT
*
9084678 AAAGGATTGATCACTTGGCA
1 AAAGGATCGATCACTTGG-A
9084698 AAAGGATCGAT-ACTTTGGA
1 AAAGGATCGATCAC-TTGGA
9084717 AAA
1 AAA
9084720 CAGTGAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (19 bp):
AAAGGATCGATCACTTGGA
Found at i:9088255 original size:26 final size:25
Alignment explanation
Indices: 9088213--9088271 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 25
9088203 GTCACAATTC
*
9088213 ATAA-CATAGTTCAAATCTATCAGT-
1 ATAATCATAGTTCAAATCAAT-AGTG
**
9088237 ATAAATCATAGTTTGAATCAATAGTG
1 AT-AATCATAGTTCAAATCAATAGTG
9088263 ATAATCATA
1 ATAATCATA
9088272 AACTTGAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 2 0.07
25 12 0.41
26 15 0.52
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (25 bp):
ATAATCATAGTTCAAATCAATAGTG
Found at i:9090012 original size:89 final size:89
Alignment explanation
Indices: 9089856--9090031 Score: 307
Period size: 89 Copynumber: 2.0 Consensus size: 89
9089846 TAATCCCGAA
* * * *
9089856 TATTTAATTTCATTTAATTAAATATAGATTTAATTAATTTGAAATAATAAATCCCTAATATGATT
1 TATTAAATTTCAATTAATTAAATATAGATTTAATTAAATTGAAATAATAAAACCCTAATATGATT
9089921 AGGGTAACTTGGATATAAAAGGAT
66 AGGGTAACTTGGATATAAAAGGAT
9089945 TATTAAATTTCAATTAATTAAATATAGATTTAATTAAATTGAAATAATAAAACCCTAATATGATT
1 TATTAAATTTCAATTAATTAAATATAGATTTAATTAAATTGAAATAATAAAACCCTAATATGATT
*
9090010 AGGGTAACTTGGCTATAAAAGG
66 AGGGTAACTTGGATATAAAAGG
9090032 GTGTGGTAGG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 82 1.00
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.38
Consensus pattern (89 bp):
TATTAAATTTCAATTAATTAAATATAGATTTAATTAAATTGAAATAATAAAACCCTAATATGATT
AGGGTAACTTGGATATAAAAGGAT
Found at i:9096831 original size:90 final size:88
Alignment explanation
Indices: 9096722--9096895 Score: 267
Period size: 89 Copynumber: 2.0 Consensus size: 88
9096712 TCCCAAATAT
* * * *
9096722 TTAATTTCAATTAATTAAATGTATATTTAATTAATTTGAAATAATAAAATCCCTAATATGATTAG
1 TTAAATTCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAA-CCCTAATATGATTAG
* *
9096787 GGTAATTTGGATATGAAAGGATTA
65 GGTAACTTGGATATAAAAGGATTA
9096811 TTAAATTCTAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAACCCTAATATGATTAG
1 TTAAATTC-AATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAACCCTAATATGATTAG
*
9096876 GGTAACTTGGCTATAAAAGG
65 GGTAACTTGGATATAAAAGG
9096896 GTGTGTTAGG
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 39 0.51
90 38 0.49
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (88 bp):
TTAAATTCAATTAATTAAATATAGATTTAATTAATTTAAAATAATAAAACCCTAATATGATTAGG
GTAACTTGGATATAAAAGGATTA
Found at i:9113750 original size:31 final size:31
Alignment explanation
Indices: 9113700--9113839 Score: 127
Period size: 31 Copynumber: 4.7 Consensus size: 31
9113690 TGAATAAATG
* ** *
9113700 TTTGAATCAATGTCAGTAAATATTATTTCTT
1 TTTGAATCAATATTTGTAAATATTATTTCTA
*
9113731 TTTGAATCAATATTTGTAAATA-GA-----A
1 TTTGAATCAATATTTGTAAATATTATTTCTA
*
9113756 -TGGAATCAATATTTGTAAATATTATTTCTA
1 TTTGAATCAATATTTGTAAATATTATTTCTA
9113786 TTTGAA-CAA-ATGTATGTAAATATTATTTCTA
1 TTTGAATCAATAT-T-TGTAAATATTATTTCTA
* *
9113817 TTTGAATGAATGTTTGTAAATAT
1 TTTGAATCAATATTTGTAAATAT
9113840 CAATTTAAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 22
0.73 0.08 0.18
Matches are distributed among these distances:
24 20 0.23
25 1 0.01
29 2 0.02
30 6 0.07
31 55 0.62
32 3 0.03
33 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (31 bp):
TTTGAATCAATATTTGTAAATATTATTTCTA
Found at i:9113762 original size:55 final size:55
Alignment explanation
Indices: 9113703--9113807 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
9113693 ATAAATGTTT
* *
9113703 GAATCAATGTCAGTAAATATTATTTCTTTTTGAATCAATAT-T-TGTAAATAGAATG
1 GAATCAATATCAGTAAATATTATTTCTATTTGAA-CAA-ATGTATGTAAATAGAATG
**
9113758 GAATCAATATTTGTAAATATTATTTCTATTTGAACAAATGTATGTAAATA
1 GAATCAATATCAGTAAATATTATTTCTATTTGAACAAATGTATGTAAATA
9113808 TTATTTCTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
53 2 0.05
54 4 0.09
55 38 0.86
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (55 bp):
GAATCAATATCAGTAAATATTATTTCTATTTGAACAAATGTATGTAAATAGAATG
Found at i:9120738 original size:30 final size:30
Alignment explanation
Indices: 9120704--9120778 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
9120694 AATGCATATG
* *
9120704 GTGTGTATGGACACTTAGTACAGT-ACTATA
1 GTGTGTAAGGACACTTACTACA-TCACTATA
* * *
9120734 GTGTGTACGGACACTTACTACATCATTGTA
1 GTGTGTAAGGACACTTACTACATCACTATA
9120764 GTGTGTAAGGACACT
1 GTGTGTAAGGACACT
9120779 CAGTGCAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 1 0.03
30 38 0.97
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (30 bp):
GTGTGTAAGGACACTTACTACATCACTATA
Found at i:9120800 original size:28 final size:28
Alignment explanation
Indices: 9120764--9120836 Score: 146
Period size: 28 Copynumber: 2.6 Consensus size: 28
9120754 CATCATTGTA
9120764 GTGTGTAAGGACACTCAGTGCAATAGTG
1 GTGTGTAAGGACACTCAGTGCAATAGTG
9120792 GTGTGTAAGGACACTCAGTGCAATAGTG
1 GTGTGTAAGGACACTCAGTGCAATAGTG
9120820 GTGTGTAAGGACACTCA
1 GTGTGTAAGGACACTCA
9120837 TTGTATATGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.25
Consensus pattern (28 bp):
GTGTGTAAGGACACTCAGTGCAATAGTG
Found at i:9132097 original size:51 final size:52
Alignment explanation
Indices: 9131966--9132097 Score: 134
Period size: 50 Copynumber: 2.6 Consensus size: 52
9131956 ACAAGTGAAA
* * *
9131966 TATTTTTTTTCATCTCTCATTTTTTTC-TCTTTTTCTTTTCTTTCTTGTTTTC
1 TATTTTTTTTCTTCT-TCATTTTTTTCTTCTTTTTCTATTCTTTCTTATTTTC
* *
9132018 -A-GTTTTTTCTTCTTCATTTTCATT-TTCTTTTTCTATT-TTT-TTATTCTTC
1 TATTTTTTTTCTTCTTCATTTT-TTTCTTCTTTTTCTATTCTTTCTTATT-TTC
9132067 TATTTTTTTTCTTCTTC-TGTTTTTTCTTCTT
1 TATTTTTTTTCTTCTTCAT-TTTTTTCTTCTT
9132098 CTTATAATAT
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
48 4 0.06
49 13 0.20
50 27 0.41
51 22 0.33
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.73
Consensus pattern (52 bp):
TATTTTTTTTCTTCTTCATTTTTTTCTTCTTTTTCTATTCTTTCTTATTTTC
Found at i:9133207 original size:6 final size:6
Alignment explanation
Indices: 9133193--9133233 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
9133183 ATCATAACCG
* *
9133193 TGACCA TGACTA TGACCA TGACTA TGACCA TGACCA TGACC
1 TGACCA TGACCA TGACCA TGACCA TGACCA TGACCA TGACC
9133234 TATGGGTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (6 bp):
TGACCA
Found at i:9133210 original size:12 final size:12
Alignment explanation
Indices: 9133193--9133233 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
9133183 ATCATAACCG
9133193 TGACCATGACTA
1 TGACCATGACTA
9133205 TGACCATGACTA
1 TGACCATGACTA
*
9133217 TGACCATGACCA
1 TGACCATGACTA
9133229 TGACC
1 TGACC
9133234 TATGGGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (12 bp):
TGACCATGACTA
Found at i:9138600 original size:22 final size:22
Alignment explanation
Indices: 9138575--9138627 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
9138565 CATCTAATGC
**
9138575 TTCAAGAGCTGACAAAAACAAA
1 TTCAAGAAATGACAAAAACAAA
9138597 TTCAAGAAATGACAAAAACAAA
1 TTCAAGAAATGACAAAAACAAA
9138619 TTCAAGAAA
1 TTCAAGAAA
9138628 CATATGGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.58, C:0.15, G:0.11, T:0.15
Consensus pattern (22 bp):
TTCAAGAAATGACAAAAACAAA
Found at i:9172982 original size:25 final size:25
Alignment explanation
Indices: 9172947--9172995 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
9172937 AGTGTAGTCA
*
9172947 TCATCTGGAGTGGAGAAATCTAGCT
1 TCATCTAGAGTGGAGAAATCTAGCT
*
9172972 TCATCTAGAGTGGAGCAATCTAGC
1 TCATCTAGAGTGGAGAAATCTAGC
9172996 ATACTTTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (25 bp):
TCATCTAGAGTGGAGAAATCTAGCT
Found at i:9192578 original size:24 final size:23
Alignment explanation
Indices: 9192531--9192610 Score: 108
Period size: 23 Copynumber: 3.5 Consensus size: 23
9192521 AGAATTCATC
* *
9192531 TAAAGTAATTTAAATAAAAAATA
1 TAAATTAATTTGAATAAAAAATA
9192554 TAAATTAATTTGAATAAAAATATA
1 TAAATTAATTTGAATAAAAA-ATA
* *
9192578 TAAAATAAATTGAAT-AAAAATA
1 TAAATTAATTTGAATAAAAAATA
9192600 TAAATTAATTT
1 TAAATTAATTT
9192611 AAACAATAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
22 12 0.24
23 22 0.44
24 16 0.32
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
TAAATTAATTTGAATAAAAAATA
Found at i:9211483 original size:2 final size:2
Alignment explanation
Indices: 9211476--9211506 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9211466 ATTACGCGTG
9211476 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9211507 TAACTACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9219915 original size:246 final size:245
Alignment explanation
Indices: 9219475--9220201 Score: 1062
Period size: 246 Copynumber: 3.0 Consensus size: 245
9219465 TTGGTGCTGG
* ** *
9219475 TCAAACTGAGAAAGATAACCAAGGTAGACTGATGGAATTTTGTAAGACTCGGGGAATACATGAAG
1 TCAAACTGAGAAAGATAATC-AGGTAGACTGATGGAAGATTCTAAGACTCGGGGAATACATGAAG
9219540 ATTCAGATGAACAGATATCTCAAAAGACTGATTTTGTTGGCATTTCACATATTCATGTCGAGGAC
65 ATTCAGATGAACAGATATCTCAAAAGACTGATTTTGTTGGCATTTCACATATTCATGTCGAGGAC
* * * * *
9219605 GGAA-CTGCTCTTCCTACTACTTCCAATCCAAAGATGGGAAATTTCGAAAATGGCCATCTAGCAT
130 GGAAGC-GCTCTTCCTACTGCTTCCAATCCAAAGATTGGAGATTTTGAAAATGGCCATTTAGCAT
* *
9219669 CTCCTGTTGAGATTTCTTTACCCCCTGTAGATGTCAACGGGTTTGCTGTTGA
194 CTCCTGCTGAGATTTCTTTACCCCCTGTAGATGTCAACGGGTTTGCTGTTAA
* *
9219721 TCAAACTGAGAAAGATAATCAGGATAGATTGATGGAAGATTCTAAGACCCGGGGAATACATGAAG
1 TCAAACTGAGAAAGATAATCAGG-TAGACTGATGGAAGATTCTAAGACTCGGGGAATACATGAAG
* * * * * *
9219786 TTTCAGATGAAAAAATATCTCAAAAGACT-AGTTCTGTTAGCATTTCGCATATTCATGTCGAGGA
65 ATTCAGATGAACAGATATCTCAAAAGACTGA-TTTTGTTGGCATTTCACATATTCATGTCGAGGA
* *
9219850 CGGAAGCACTCTTCCTGCTGCTTCCAATCCAAAGATTGGAGATTTTGAAAATGGCCATTTAGCAT
129 CGGAAGCGCTCTTCCTACTGCTTCCAATCCAAAGATTGGAGATTTTGAAAATGGCCATTTAGCAT
* * * *
9219915 CTCCTGCTGAGATTTCTGTACCCCTTGGAGATGTCAACGGGTTTGCTTTTAA
194 CTCCTGCTGAGATTTCTTTACCCCCTGTAGATGTCAACGGGTTTGCTGTTAA
* * *
9219967 TCAAAATGAGAAAGATAATCAGGGTAGACTGATGGAAGATTCTAAGACTTGGGGAATACATGATG
1 TCAAACTGAGAAAGATAATCA-GGTAGACTGATGGAAGATTCTAAGACTCGGGGAATACATGAAG
*
9220032 GTTCAGATGAACAGATATCTCAAAAGACTGATTTTGTTGGCATTTCACATATTCATGTCGAGGAC
65 ATTCAGATGAACAGATATCTCAAAAGACTGATTTTGTTGGCATTTCACATATTCATGTCGAGGAC
* * * *
9220097 GGAAGTGCTCTTCCTACTGCTTCCAATCCAAAGACTGGAGATTCTGAAAATGGACATTTAGCATC
130 GGAAGCGCTCTTCCTACTGCTTCCAATCCAAAGATTGGAGATTTTGAAAATGGCCATTTAGCATC
* * * *
9220162 TTCTACTGAGATTTCTTTACCCCCAGTAGATATCAACGGG
195 TCCTGCTGAGATTTCTTTACCCCCTGTAGATGTCAACGGG
9220202 GATTTTTTTG
Statistics
Matches: 427, Mismatches: 49, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
245 4 0.01
246 419 0.98
247 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (245 bp):
TCAAACTGAGAAAGATAATCAGGTAGACTGATGGAAGATTCTAAGACTCGGGGAATACATGAAGA
TTCAGATGAACAGATATCTCAAAAGACTGATTTTGTTGGCATTTCACATATTCATGTCGAGGACG
GAAGCGCTCTTCCTACTGCTTCCAATCCAAAGATTGGAGATTTTGAAAATGGCCATTTAGCATCT
CCTGCTGAGATTTCTTTACCCCCTGTAGATGTCAACGGGTTTGCTGTTAA
Found at i:9223987 original size:45 final size:44
Alignment explanation
Indices: 9223938--9224039 Score: 111
Period size: 43 Copynumber: 2.3 Consensus size: 44
9223928 AAGTCTTAAT
*
9223938 TATAAAAGTAGAAATTGAGATCGAAAAAAAAC-TA-GGCGCCTCAAA
1 TATAAATGTAGAAATTGAGATCG--AAAAAACTTATGG-GCCTCAAA
* * * *
9223983 TATAAATGTA-TAATTGATATTGAAAAAACTTATGGGCCTCAAT
1 TATAAATGTAGAAATTGAGATCGAAAAAACTTATGGGCCTCAAA
9224026 TATAAATGTAGAAA
1 TATAAATGTAGAAA
9224040 GCGAGATTGA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
42 7 0.15
43 19 0.40
44 13 0.27
45 9 0.19
ACGTcount: A:0.48, C:0.10, G:0.16, T:0.26
Consensus pattern (44 bp):
TATAAATGTAGAAATTGAGATCGAAAAAACTTATGGGCCTCAAA
Found at i:9224223 original size:43 final size:42
Alignment explanation
Indices: 9224150--9224343 Score: 124
Period size: 43 Copynumber: 4.3 Consensus size: 42
9224140 AATCTTAGGG
* * *
9224150 GCCTCAATTGTAAAGGTAGAAAGT-GAGATTATAAAAACTTAAG-
1 GCCTCAATTATAAAGTTAAAAAGTAG-GATTA-AAAAA-TTAAGA
* * * *
9224193 GTCTCAATTATAAAGTTAAAAAGCAGGATTAAAAAATTATGC
1 GCCTCAATTATAAAGTTAAAAAGTAGGATTAAAAAATTAAGA
* *
9224235 CCCTCAATTACAAAGTTAGAAAAGGTAGAAGTGATATTGAAAAAACTTAAG-
1 GCCTCAATTATAAAGTTA-AAAA-GT---AG-G--ATT-AAAAAA-TTAAGA
* *
9224286 GACCTCAATTATAAAGTTAAAAAAGTGGGATTAAAAAATTAGGA
1 G-CCTCAATTATAAAGTT-AAAAAGTAGGATTAAAAAATTAAGA
*
9224330 GTCTCAATTATAAA
1 GCCTCAATTATAAA
9224344 AGTAAATCCC
Statistics
Matches: 120, Mismatches: 16, Indels: 30
0.72 0.10 0.18
Matches are distributed among these distances:
41 4 0.03
42 20 0.17
43 44 0.37
44 9 0.08
45 3 0.03
47 3 0.03
48 2 0.02
50 3 0.03
51 8 0.07
52 23 0.19
53 1 0.01
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.26
Consensus pattern (42 bp):
GCCTCAATTATAAAGTTAAAAAGTAGGATTAAAAAATTAAGA
Done.