Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 42 of 56
Found at i:9793358 original size:15 final size:15
Alignment explanation
Indices: 9793296--9793356 Score: 77
Period size: 15 Copynumber: 3.9 Consensus size: 15
9793286 GAAGAAGAAA
9793296 AAAAGAAAAATAAAAT
1 AAAAG-AAAATAAAAT
9793312 AAAAGAAAATAAAAT
1 AAAAGAAAATAAAAT
* *
9793327 AAAAGAAAAGAAAAA
1 AAAAGAAAATAAAAT
*
9793342 AGAAAGCAAATAAAA
1 A-AAAGAAAATAAAA
9793357 AGGGGGATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
15 24 0.60
16 16 0.40
ACGTcount: A:0.80, C:0.02, G:0.10, T:0.08
Consensus pattern (15 bp):
AAAAGAAAATAAAAT
Found at i:9794053 original size:19 final size:17
Alignment explanation
Indices: 9794025--9794105 Score: 54
Period size: 19 Copynumber: 4.4 Consensus size: 17
9794015 ATCATAATTT
*
9794025 AGAAGAAGAAAAATAAA
1 AGAAAAAGAAAAATAAA
* *
9794042 AGAAATGTAGAAAAGAAAAA
1 AGAAA--AAGAAAA-ATAAA
9794062 AGAGAAAAGAAAAATAAAA
1 AGA-AAAAGAAAAAT-AAA
* * *
9794081 AGAAAACGAGAAATAGA
1 AGAAAAAGAAAAATAAA
9794098 AGCAAAAA
1 AG-AAAAA
9794106 ACAAAGTGAA
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
17 8 0.16
18 14 0.29
19 18 0.37
20 7 0.14
21 2 0.04
ACGTcount: A:0.73, C:0.02, G:0.19, T:0.06
Consensus pattern (17 bp):
AGAAAAAGAAAAATAAA
Found at i:9794152 original size:41 final size:41
Alignment explanation
Indices: 9794107--9794197 Score: 155
Period size: 41 Copynumber: 2.2 Consensus size: 41
9794097 AAGCAAAAAA
*
9794107 CAAAGTGAAAACCCGAAAGGGCACTTTGAGAAGAGTGAATC
1 CAAAGTGAAAACCCGAAAGGGCACTTTGAAAAGAGTGAATC
*
9794148 CAAAGTGAAAACCCGAAAGGGTACTTTGAAAAGAGTGAATC
1 CAAAGTGAAAACCCGAAAGGGCACTTTGAAAAGAGTGAATC
*
9794189 TAAAGTGAA
1 CAAAGTGAA
9794198 GAATGAGATA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.44, C:0.14, G:0.25, T:0.16
Consensus pattern (41 bp):
CAAAGTGAAAACCCGAAAGGGCACTTTGAAAAGAGTGAATC
Found at i:9794878 original size:127 final size:126
Alignment explanation
Indices: 9794641--9794888 Score: 281
Period size: 127 Copynumber: 2.0 Consensus size: 126
9794631 ATCTTTTTTT
* *
9794641 GATTCTTTACAAAAGGAGTTGAATCAGCGTAACCTTATTTTACTTGATTCTATCACAAAAGAAGG
1 GATTCTTCACAAAAGGAGTTGAATCAGCATAACCTTATTTTACTTGATTCTATCACAAAAGAAGG
* *
9794706 TAGATCATCATCGGTATTTTATTTGATCCTTCACAGAAGGAGTTGGATCAATCATTTCACTC
66 TAGATCATCATCGGAATTGTATTTGATCCTTCACAGAAGGAGTTGGATCAA-CATTTCACTC
* ** *
9794768 GATTCTTCACAGAAGGAGTTGAATCAGCATAATCCTT-TTTTGTTTGATTCTATCA-ATGAATG-
1 GATTCTTCACAAAAGGAGTTGAATCAGCATAA-CCTTATTTTACTTGATTCTATCACA--AAAGA
* * * * * *
9794830 AGGTATATCGA-CATTGGAAATTGT-TTTGATTCTTCATATAAGGTGTTGGATCAACATTT
63 AGGTAGATC-ATCATCGG-AATTGTATTTGATCCTTCACAGAAGGAGTTGGATCAACATTT
9794889 GTTGTGTTAC
Statistics
Matches: 102, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
126 6 0.06
127 84 0.82
128 12 0.12
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (126 bp):
GATTCTTCACAAAAGGAGTTGAATCAGCATAACCTTATTTTACTTGATTCTATCACAAAAGAAGG
TAGATCATCATCGGAATTGTATTTGATCCTTCACAGAAGGAGTTGGATCAACATTTCACTC
Found at i:9803143 original size:18 final size:18
Alignment explanation
Indices: 9803112--9803162 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
9803102 GATACCCTTG
*
9803112 ACAT-AGTATTGATACTC
1 ACATGAGTATCGATACTC
9803129 ACATGAGTATCGATACTC
1 ACATGAGTATCGATACTC
*
9803147 ATATGAGTATCGATAC
1 ACATGAGTATCGATAC
9803163 CAAAACTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (18 bp):
ACATGAGTATCGATACTC
Found at i:9805195 original size:13 final size:13
Alignment explanation
Indices: 9805177--9805203 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9805167 AAAGAAGACA
9805177 AATGGAGCAATGG
1 AATGGAGCAATGG
9805190 AATGGAGCAATGG
1 AATGGAGCAATGG
9805203 A
1 A
9805204 GAAGAGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.37, T:0.15
Consensus pattern (13 bp):
AATGGAGCAATGG
Found at i:9805494 original size:31 final size:31
Alignment explanation
Indices: 9805419--9805496 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
9805409 TTTAACATCC
* *
9805419 AAGTGACCGAATCTTAATAAAACGATAATGT
1 AAGTGACTGAAACTTAATAAAACGATAATGT
*
9805450 AAGTGA-TCAAAACTTAATAAAACGATAAAT-T
1 AAGTGACT-GAAACTTAATAAAACGAT-AATGT
9805481 AAGTGACTGAAACTTA
1 AAGTGACTGAAACTTA
9805497 TTTTTTTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
31 36 0.90
32 4 0.10
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.26
Consensus pattern (31 bp):
AAGTGACTGAAACTTAATAAAACGATAATGT
Found at i:9806150 original size:17 final size:18
Alignment explanation
Indices: 9806123--9806159 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
9806113 AAATGATTAC
*
9806123 ATATGAATTATATTTAAA
1 ATATGAATTATATTAAAA
9806141 ATAT-AATTATATTAAAA
1 ATATGAATTATATTAAAA
9806158 AT
1 AT
9806160 TATTTAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATGAATTATATTAAAA
Found at i:9806329 original size:28 final size:31
Alignment explanation
Indices: 9806256--9806329 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 31
9806246 ATATAATTTT
*
9806256 AAAT-TTATATTCATTTGAAAATGATTATAA
1 AAATATTAAATTCATTTGAAAATGATTATAA
* * *
9806286 AAA-ATTAATTTAATTT-AAAATTA-TA-AA
1 AAATATTAAATTCATTTGAAAATGATTATAA
9806313 AAATATTAAATTCATTT
1 AAATATTAAATTCATTT
9806330 TTATTTTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
27 5 0.14
28 13 0.36
29 6 0.17
30 12 0.33
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (31 bp):
AAATATTAAATTCATTTGAAAATGATTATAA
Found at i:9807631 original size:21 final size:21
Alignment explanation
Indices: 9807606--9807657 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
9807596 GTGATTGCGA
9807606 CCGTCGCGGGCACTATTACGG
1 CCGTCGCGGGCACTATTACGG
* * **
9807627 TCGTCGCGGACGTTATTACGG
1 CCGTCGCGGGCACTATTACGG
9807648 CCGTCGCGGG
1 CCGTCGCGGG
9807658 TAACTCGAAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.12, C:0.31, G:0.37, T:0.21
Consensus pattern (21 bp):
CCGTCGCGGGCACTATTACGG
Found at i:9810227 original size:29 final size:29
Alignment explanation
Indices: 9810195--9810264 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
9810185 TAAGGGATCA
9810195 AAATAAAAATAATAAAAACTTAAAGGACT
1 AAATAAAAATAATAAAAACTTAAAGGACT
* * *
9810224 AAATTGAAAA-AATAAAAAGTTAAGGGACT
1 AAA-TAAAAATAATAAAAACTTAAAGGACT
9810253 AAATAGAAAATA
1 AAATA-AAAATA
9810265 CAAACATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
28 1 0.03
29 27 0.79
30 6 0.18
ACGTcount: A:0.64, C:0.04, G:0.11, T:0.20
Consensus pattern (29 bp):
AAATAAAAATAATAAAAACTTAAAGGACT
Found at i:9810363 original size:30 final size:29
Alignment explanation
Indices: 9810322--9810396 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
9810312 AAAAATGGCA
* * *
9810322 AAAATTGAAAGGGCTAAAATAGTATAAAC
1 AAAATTTAAAGGGCTAAAATAGAAAAAAC
*
9810351 AGAAATTTAAAGGACTAAAATAGAAAAAAC
1 A-AAATTTAAAGGGCTAAAATAGAAAAAAC
*
9810381 AACAATTTGAAGGGCT
1 AA-AATTTAAAGGGCT
9810397 GAACAGTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 2 0.05
30 36 0.95
ACGTcount: A:0.55, C:0.08, G:0.17, T:0.20
Consensus pattern (29 bp):
AAAATTTAAAGGGCTAAAATAGAAAAAAC
Found at i:9812055 original size:30 final size:30
Alignment explanation
Indices: 9812035--9812100 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
9812025 GCTGATGGGT
* *
9812035 TGGGTCCCTTGTTCTGCTGGGCTTATAATC
1 TGGGTCCCTTGTACTGCTGGGCTGATAATC
*
9812065 TGGGTCCCTTGTACTGCTGAGCTTG-TAATC
1 TGGGTCCCTTGTACTGCTGGGC-TGATAATC
*
9812095 TAGGTC
1 TGGGTC
9812101 TTGTAATTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.12, C:0.23, G:0.27, T:0.38
Consensus pattern (30 bp):
TGGGTCCCTTGTACTGCTGGGCTGATAATC
Found at i:9812158 original size:3 final size:3
Alignment explanation
Indices: 9812152--9812206 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
9812142 TTGTTAACAA
9812152 AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT -AT AAT AAT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
9812197 ACT AAT AAT A
1 AAT AAT AAT A
9812207 TTTTTGTAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 6 0.13
3 41 0.87
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:9812175 original size:11 final size:11
Alignment explanation
Indices: 9812152--9812207 Score: 76
Period size: 11 Copynumber: 4.7 Consensus size: 11
9812142 TTGTTAACAA
9812152 AATAATAATAAT
1 AATAAT-ATAAT
9812164 AATAATATAAT
1 AATAATATAAT
9812175 AATAATATAAT
1 AATAATATAAT
9812186 AATAATAATATACT
1 AATAAT-ATA-A-T
9812200 AATAATAT
1 AATAATAT
9812208 TTTTGTAGAC
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
11 22 0.54
12 9 0.22
13 3 0.07
14 7 0.17
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
AATAATATAAT
Found at i:9812175 original size:14 final size:14
Alignment explanation
Indices: 9812153--9812206 Score: 83
Period size: 14 Copynumber: 3.9 Consensus size: 14
9812143 TGTTAACAAA
9812153 ATAATAATAATAAT
1 ATAATAATAATAAT
9812167 A-ATATAATAATAAT
1 ATA-ATAATAATAAT
9812181 ATAATAATAATAAT
1 ATAATAATAATAAT
*
9812195 ATACTAATAATA
1 ATAATAATAATA
9812207 TTTTTGTAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
13 1 0.03
14 35 0.95
15 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:9812662 original size:130 final size:131
Alignment explanation
Indices: 9812431--9812822 Score: 500
Period size: 130 Copynumber: 3.0 Consensus size: 131
9812421 ATGAAGAGTT
***
9812431 CTGGCCATCTTTAGGGAAGGTGATAACACGATTCCTACACAATGAGGATGGCTGGTTATCTA-AG
1 CTGGCCATCTTTAGGG-A--TGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGA-
* * * * * *
9812495 GGTGACATGGCTCCTAAGTGATGAGGAGGTATGGTCGGGGGATAACACGGTTCCTACATAATGAG
62 GGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAG
9812560 GACAG
127 GACAG
* * *
9812565 TTGGCCATCTTTAGGGATGATAACACGATTCCTACGTGATGAGGACGGTTGGTTATC-AGAGGTG
1 CTGGCCATCTTTAGGGATGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGAGGTG
* * **
9812629 ACACAACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACGTGATGAGGATG
66 ACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAGGACA
9812694 G
131 G
** * * * * * *
9812695 CAAGCCATCTTTAGGAATGATAACACGGTTCCTATGTGATGAGGATGACAGGTTATCTAGGGGTG
1 CTGGCCATCTTTAGGGATGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGAGGTG
* *
9812760 ACACGACTCCTACGTGATGAGGAGGTCTGGTTGGGGGATGACACGGTTCCTACACGATGAGGA
66 ACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAGGA
9812823 TGGTAGGCTA
Statistics
Matches: 225, Mismatches: 31, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
130 108 0.48
131 101 0.45
133 1 0.00
134 15 0.07
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (131 bp):
CTGGCCATCTTTAGGGATGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGAGGTG
ACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAGGACA
G
Found at i:9812823 original size:131 final size:131
Alignment explanation
Indices: 9812433--9812839 Score: 528
Period size: 131 Copynumber: 3.1 Consensus size: 131
9812423 GAAGAGTTCT
*** *
9812433 GGCCATCTTTAGGGAAGGTGATAACACGATTCCTACACAATGAGGATGGCTGGTTATCTAAGGGT
1 GGCCATCTTTA-GGAA--TGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGGGGT
* * * * * * *
9812498 GACATGGCTCCTAAGTGATGAGGAGGTATGGTCGGGGGATAACACGGTTCCTACATAATGAGGAC
63 GACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAGGAT
* *
9812563 AGTT
128 GGTA
* * * *
9812567 GGCCATCTTTAGGGATGATAACACGATTCCTACGTGATGAGGACGGTTGGTTATC-AGAGGTGAC
1 GGCCATCTTTAGGAATGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGGGGTGAC
* * *
9812631 ACAACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACGTGATGAGGATGGC
66 ACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAGGATGGT
9812696 A
131 A
* * * * *
9812697 AGCCATCTTTAGGAATGATAACACGGTTCCTATGTGATGAGGATGACAGGTTATCTAGGGGTGAC
1 GGCCATCTTTAGGAATGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGGGGTGAC
* *
9812762 ACGACTCCTACGTGATGAGGAGGTCTGGTTGGGGGATGACACGGTTCCTACACGATGAGGATGGT
66 ACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAGGATGGT
9812827 A
131 A
*
9812828 GGCTATCTTTAG
1 GGCCATCTTTAG
9812840 TGATTTTGGT
Statistics
Matches: 236, Mismatches: 36, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
130 108 0.46
131 114 0.48
133 3 0.01
134 11 0.05
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (131 bp):
GGCCATCTTTAGGAATGATAACACGATTCCTACGTGATGAGGATGGCTGGTTATCTAGGGGTGAC
ACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGGATGACACGGTTCCTACATGATGAGGATGGT
A
Found at i:9812994 original size:30 final size:31
Alignment explanation
Indices: 9812914--9812986 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
9812904 ACAAAATCCA
* *
9812914 TTTCAAG-GAAA-TAACTCAAAGATGGTTTTG
1 TTTCAAGAGAAACAAACTCAAAGAT-GTTGTG
9812944 TTTCAAGAGAAACAAACTCAAAGAT-TTGTG
1 TTTCAAGAGAAACAAACTCAAAGATGTTGTG
*
9812974 TTTCCAGAGAAAC
1 TTTCAAGAGAAAC
9812987 TGCCTCAAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 23 0.61
31 4 0.11
32 11 0.29
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (31 bp):
TTTCAAGAGAAACAAACTCAAAGATGTTGTG
Found at i:9813010 original size:66 final size:66
Alignment explanation
Indices: 9812940--9813219 Score: 204
Period size: 66 Copynumber: 4.3 Consensus size: 66
9812930 CAAAGATGGT
* * * *
9812940 TTTGTTTCAAGAGAAACAAACTCAAAGATTTGTGTTTCCAGAGAAACTGCCTCAAGGGAGACAAA
1 TTTGTTTCAAGAGAAACAAACTCAAAGATTT-TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAA
9813005 A-
65 AC
* * * * * *
9813006 TTTGTTTCAATG-GAAACGATCTCAAAG-GTTGGTTTTAAGAGAAACTGTCTCAAGAGAGACAAA
1 TTTGTTTCAA-GAGAAACAAACTCAAAGATTTTGTTTCAAAAGAAACTGTCTCAAGAGAGACAAA
9813069 AC
65 AC
* * * * *
9813071 TTTATTTTC-ATAGAAACAGACTCAAATATCTTTCTTT-AAAAGAAACTGTCTC-AG-GAGA-AA
1 TTT-GTTTCAAGAGAAACAAACTCAAAGAT-TTTGTTTCAAAAGAAACTGTCTCAAGAGAGACAA
*
9813131 AAA
64 AAC
* ** * * * *
9813134 TTTGTTTCGATG-GAAATGATCTCAAAGGTTTT-TTTCTCAAAGGAACTTGTCTCAAGAGAGACA
1 TTTGTTTC-AAGAGAAACAAACTCAAAGATTTTGTTTC-AAAAGAAAC-TGTCTCAAGAGAGACA
9813197 AAAC
63 AAAC
9813201 TTTGTTTCCAA-AGAAACAA
1 TTTGTTT-CAAGAGAAACAA
9813220 TTCAAAGGAT
Statistics
Matches: 164, Mismatches: 34, Indels: 31
0.72 0.15 0.14
Matches are distributed among these distances:
61 3 0.02
62 7 0.04
63 25 0.15
64 39 0.24
65 21 0.13
66 45 0.27
67 23 0.14
68 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (66 bp):
TTTGTTTCAAGAGAAACAAACTCAAAGATTTTGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAA
C
Found at i:9813014 original size:96 final size:97
Alignment explanation
Indices: 9812843--9813021 Score: 220
Period size: 96 Copynumber: 1.9 Consensus size: 97
9812833 TCTTTAGTGA
** * * *
9812843 TTTTGGTTTCAAGAGAAACTGACTCAAAGATGATGCTTGAAGAGAAGCTGTCTCAAGAGAGACAA
1 TTTTGGTTTCAAGAGAAACAAACTCAAAGATGATGCTTCAAGAGAAACTGCCTCAAGAGAGACAA
9812908 AATCCATTTCAA-GGAAATAACTCAAAGATGG
66 AATCCATTTCAATGGAAATAACTCAAAGATGG
* * *
9812939 TTTT-GTTTCAAGAGAAACAAACTCAAAGATTTG-TGTTTCCAGAGAAACTGCCTCAAGGGAGAC
1 TTTTGGTTTCAAGAGAAACAAACTCAAAGA--TGATGCTTCAAGAGAAACTGCCTCAAGAGAGAC
***
9813002 AAAATTTGTTTCAATGGAAA
64 AAAATCCATTTCAATGGAAA
9813022 CGATCTCAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
95 23 0.33
96 39 0.57
97 7 0.10
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (97 bp):
TTTTGGTTTCAAGAGAAACAAACTCAAAGATGATGCTTCAAGAGAAACTGCCTCAAGAGAGACAA
AATCCATTTCAATGGAAATAACTCAAAGATGG
Found at i:9813066 original size:64 final size:63
Alignment explanation
Indices: 9812979--9813208 Score: 220
Period size: 64 Copynumber: 3.6 Consensus size: 63
9812969 TTGTGTTTCC
* * *
9812979 AGAGAAACTGCCTCAAGGGAGACAAAA-TTTGTTTCAATGGAAACGATCTCAAAGGTTGGTTTTA
1 AGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTC-ATGGAAACGATCTCAAAGGTT-TTTTTA
* * **
9813043 AGAGAAACTGTCTCAAGAGAGACAAAACTTTATTTTCATAGAAACAGA-CTCAAATATCTTTCTT
1 AGAGAAACTGTCTCAAGAGAGACAAAACTTT-GTTTCATGGAAAC-GATCTCAAAGGT-TTT-TT
9813107 TA
62 TA
* * *
9813109 AAAGAAACTGTCTC-AG-GAGA-AAAAATTTGTTTCGATGGAAATGATCTCAAAGGTTTTTTTCT
1 AGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTC-ATGGAAACGATCTCAAAGG-TTTTTT-T
9813171 CA
63 -A
*
9813173 A-AGGAACTTGTCTCAAGAGAGACAAAACTTTGTTTC
1 AGAGAAAC-TGTCTCAAGAGAGACAAAACTTTGTTTC
9813209 CAAAGAAACA
Statistics
Matches: 136, Mismatches: 16, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
62 8 0.06
63 28 0.21
64 38 0.28
65 22 0.16
66 28 0.21
67 12 0.09
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (63 bp):
AGAGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCATGGAAACGATCTCAAAGGTTTTTTTA
Found at i:9813139 original size:128 final size:132
Alignment explanation
Indices: 9812981--9813218 Score: 342
Period size: 130 Copynumber: 1.8 Consensus size: 132
9812971 GTGTTTCCAG
*
9812981 AGAAACTGCCTCAAGGGAGACAAAATTTGTTTCAATGGAAACGATCTCAAAGGTTGGTTT-T-AA
1 AGAAACTGCCTCAAGGGAGAAAAAATTTGTTTCAATGGAAACGATCTCAAAGGTTGGTTTCTCAA
* *
9813044 GAGAAAC-TGTCTCAAGAGAGACAAAACTTTATTTTCATAGAAACAGACTCAAATATCTTTCTTT
66 -AGAAACTTGTCTCAAGAGAGACAAAACTTTATTTCCAAAGAAACAGACTCAAATATCTTTCTTT
9813108 AAA
130 AAA
* * * **
9813111 AGAAACTGTCTC-A-GGAGAAAAAATTTGTTTCGATGGAAATGATCTCAAAGGTTTTTTTCTCAA
1 AGAAACTGCCTCAAGGGAGAAAAAATTTGTTTCAATGGAAACGATCTCAAAGGTTGGTTTCTCAA
* *
9813174 AGGAACTTGTCTCAAGAGAGACAAAACTTTGTTTCCAAAGAAACA
66 AGAAACTTGTCTCAAGAGAGACAAAACTTTATTTCCAAAGAAACA
9813219 ATTCAAAGGA
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
128 40 0.42
129 7 0.07
130 48 0.51
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (132 bp):
AGAAACTGCCTCAAGGGAGAAAAAATTTGTTTCAATGGAAACGATCTCAAAGGTTGGTTTCTCAA
AGAAACTTGTCTCAAGAGAGACAAAACTTTATTTCCAAAGAAACAGACTCAAATATCTTTCTTTA
AA
Found at i:9813348 original size:33 final size:33
Alignment explanation
Indices: 9813309--9813407 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
9813299 GTTGAATCCC
* *
9813309 CAAAGATGCCCCAACATTCAATGTTGATTGCTT
1 CAAAGATGCCCCAATATTCGATGTTGATTGCTT
9813342 CAAAGATGCCCCAATATTCGATGTTGATTGCTT
1 CAAAGATGCCCCAATATTCGATGTTGATTGCTT
* *
9813375 CAAAGATGCCCCAATATTCGATGTCGAGTGCTT
1 CAAAGATGCCCCAATATTCGATGTTGATTGCTT
9813408 TAGCATTGAT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (33 bp):
CAAAGATGCCCCAATATTCGATGTTGATTGCTT
Found at i:9814523 original size:14 final size:14
Alignment explanation
Indices: 9814504--9814530 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9814494 TAGAATTGAT
9814504 ATATATGAGTGTTA
1 ATATATGAGTGTTA
9814518 ATATATGAGTGTT
1 ATATATGAGTGTT
9814531 TAATGATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
ATATATGAGTGTTA
Found at i:9814746 original size:95 final size:95
Alignment explanation
Indices: 9814544--9814764 Score: 239
Period size: 95 Copynumber: 2.3 Consensus size: 95
9814534 TGATTCAATT
* * * * * *
9814544 AGTATCGATGCCATGGTAAGGGTATCGATACCAAGCATCATCGAAGCTAAATTTTGTATCGATAC
1 AGTATCGATACCATGGTAAGGGTATCGATACCAAGCAACATCGAACCTAAAATTGGTATCAATAC
*** * *
9814609 CGGCAGGGGGTATCGGTACCATAGCATGGT
66 CAAAAGGGGGTATCGGTACCATAGCATAGA
* ** *
9814639 AGTACCGATACCATGGTAAGGGTATCGATATTAGGCAACA-CTGAACCTAAAATTGGTATCAATA
1 AGTATCGATACCATGGTAAGGGTATCGATACCAAGCAACATC-GAACCTAAAATTGGTATCAATA
*
9814703 CCAAAAGGGGGTATCGGTACCATAGCTTAGA
65 CCAAAAGGGGGTATCGGTACCATAGCATAGA
* * *
9814734 AGTATCGGTACCAAGGT-AGTGGTATCAATAC
1 AGTATCGATACCATGGTAAG-GGTATCGATAC
9814765 TATGGAGCCA
Statistics
Matches: 103, Mismatches: 21, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
94 3 0.03
95 100 0.97
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (95 bp):
AGTATCGATACCATGGTAAGGGTATCGATACCAAGCAACATCGAACCTAAAATTGGTATCAATAC
CAAAAGGGGGTATCGGTACCATAGCATAGA
Found at i:9815188 original size:59 final size:59
Alignment explanation
Indices: 9815110--9815258 Score: 280
Period size: 59 Copynumber: 2.5 Consensus size: 59
9815100 CAAAGTTAAG
9815110 AAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAAA
1 AAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAAA
* *
9815169 AAATTCATACTAAGCGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAAG
1 AAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAAA
9815228 AAATTCATACTAAGTGTATGAATTTCCGTAT
1 AAATTCATACTAAGTGTATGAATTTCCGTAT
9815259 GAGATATATA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 87 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.36
Consensus pattern (59 bp):
AAATTCATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAAA
Found at i:9815269 original size:2 final size:2
Alignment explanation
Indices: 9815262--9815294 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9815252 TCCGTATGAG
9815262 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9815295 AACATAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9815728 original size:68 final size:68
Alignment explanation
Indices: 9815618--9816008 Score: 631
Period size: 68 Copynumber: 5.8 Consensus size: 68
9815608 TAAAAGATTA
*
9815618 AAGGCCTAATTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
1 AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
9815683 TTT
66 TTT
* *
9815686 GAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAAATATGCCAGTTAGATGAAAGGCTAAGTGCC
1 AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
9815751 TTT
66 TTT
*
9815754 AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCC
1 AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
9815819 TTT
66 TTT
*
9815822 AAGGCCTAACTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
1 AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
9815887 TTT
66 TTT
* * * * * * *
9815890 GAGGCCTAACTGTGCATTTGATATAAAGGTGTCAAATATTCCTGTTAGATG-AAGGCTAAGCGCC
1 AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
9815954 TTT
66 TTT
* * * *
9815957 CAGACCTAACTGTGTATTTGACAGAAAGGTGTCAATTATGCCAGTTATATGA
1 AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGA
9816009 GCGGTTAAGT
Statistics
Matches: 297, Mismatches: 25, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
67 57 0.19
68 240 0.81
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (68 bp):
AAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCC
TTT
Found at i:9816250 original size:79 final size:79
Alignment explanation
Indices: 9816028--9816483 Score: 743
Period size: 79 Copynumber: 5.8 Consensus size: 79
9816018 TACCGTTTAG
* *
9816028 TAAAAGAATAATGCATGTGGGTGCATTATTGGCATGAAAAGATGCCATAGCTGAAATGTATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
*
9816093 GTACATTGTTAGCA
66 GTACATTGTCAGCA
* * * * *
9816107 TAAAATAAAAATACATAT-GGTGCATTATTAGCATGAAAGGATGACATAGCTGAAATGTATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
9816171 GTACATTGTCAGCA
66 GTACATTGTCAGCA
9816185 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
9816250 GTACATTGTCAGCA
66 GTACATTGTCAGCA
* * *
9816264 TAAAAGAATAATGCATATGGGTGCATTATTGGCATAAAAGGATGTCATAGTTGAAATGTATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
*
9816329 GTACATTATCAGCA
66 GTACATTGTCAGCA
9816343 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
9816408 GTACATTGTCAGCA
66 GTACATTGTCAGCA
* * * * **
9816422 TAAAAGAATAATTCATATGGGTGTATTATTGGCATGAAAAGATTCCATAAATGAAATGTATA
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATA
9816484 ACGGTGTATA
Statistics
Matches: 349, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
78 71 0.20
79 278 0.80
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (79 bp):
TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
GTACATTGTCAGCA
Found at i:9816539 original size:45 final size:46
Alignment explanation
Indices: 9816451--9816550 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 46
9816441 GGTGTATTAT
* * * *
9816451 TGGCATGAAAAGATTCCATAAATGAAATGTATAACGGTGTATAAAA
1 TGGCATGAAAAGATGCCATAAATAAAATGTATAACAGTATATAAAA
* * *
9816497 -GGCATGAAATGATGCCATAAATAAAATGTATAATATTATATAAAA
1 TGGCATGAAAAGATGCCATAAATAAAATGTATAACAGTATATAAAA
*
9816542 TGACATGAA
1 TGGCATGAA
9816551 CGGTTGTTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
45 38 0.84
46 7 0.16
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (46 bp):
TGGCATGAAAAGATGCCATAAATAAAATGTATAACAGTATATAAAA
Found at i:9820265 original size:53 final size:52
Alignment explanation
Indices: 9820201--9820327 Score: 215
Period size: 53 Copynumber: 2.5 Consensus size: 52
9820191 TAAGAAATTC
9820201 ATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAAG
1 ATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGAT-AG
*
9820254 ATACTAAGTGTATGAATTTTCGTATTGGGCACTTTGTGTGCTAAAATGATAG
1 ATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAG
9820306 A-A--AAGTGTATGAATTTCCGTAT
1 ATACTAAGTGTATGAATTTCCGTAT
9820328 GGTAAATATA
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
49 19 0.26
51 1 0.01
52 3 0.04
53 49 0.68
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (52 bp):
ATACTAAGTGTATGAATTTCCGTATTGGGCACTTTGTGTGCTAAAATGATAG
Found at i:9820883 original size:68 final size:68
Alignment explanation
Indices: 9820665--9820994 Score: 545
Period size: 68 Copynumber: 4.9 Consensus size: 68
9820655 AAAAGATTAA
*
9820665 AGGCCTAACTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9820730 TTG
66 TTG
* * * *
9820733 AGGCCTAACTGTTCATTTGACAGAAAGGTGTCAAATATG-TAGTTAGATGAAAGGCTAAGAGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9820797 TTG
66 TTG
* * *
9820800 AGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9820865 TTG
66 TTG
* * * *
9820868 ATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9820933 TTG
66 TTG
9820936 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAA
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAA
9820995 TTGGGCACTT
Statistics
Matches: 238, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
67 62 0.26
68 176 0.74
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:9820907 original size:135 final size:136
Alignment explanation
Indices: 9820665--9820994 Score: 563
Period size: 135 Copynumber: 2.4 Consensus size: 136
9820655 AAAAGATTAA
*
9820665 AGGCCTAACTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
* * *
9820730 TTGAGGCCTAACTGTTCATTTGACAGAAAGGTGTCAAATATGT-AGTTAGATGAAAGGCTAAGAG
66 TTGAGGCCTAACTATGCATTTGACAGAAAGATGTCAAATATGTCAGTTAGATGAAAGGCTAAGAG
9820794 CCTTTG
131 CCTTTG
* * *
9820800 AGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
* * *
9820865 TTGATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAAGTG
66 TTGAGGCCTAACTATGCATTTGACAGAAAGATGTCAAATATGTCAGTTAGATGAAAGGCTAAGAG
9820930 CCTTTG
131 CCTTTG
9820936 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAA
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAA
9820995 TTGGGCACTT
Statistics
Matches: 181, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
135 99 0.55
136 82 0.45
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (136 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTGAGGCCTAACTATGCATTTGACAGAAAGATGTCAAATATGTCAGTTAGATGAAAGGCTAAGAG
CCTTTG
Found at i:9821651 original size:717 final size:717
Alignment explanation
Indices: 9820277--9821711 Score: 2753
Period size: 717 Copynumber: 2.0 Consensus size: 717
9820267 GAATTTTCGT
*
9820277 ATTGGGCACTTTGTGTGCTAAAATGATAGAAAAGTGTATGAATTTCCGTATGGTAAATATATGTG
1 ATTGGGCACTTTGTGTGCTAAAATGATAGAAAAGTGTATGAATTTCCGTATGGGAAATATATGTG
*
9820342 TATAAACATAAGAAATTCGTAATAAGGAAATGGATTTTTATATTGATAATGGGTATTCAAACCAC
66 TATAAACATAAGAAATTCGTAATAAGGAAATGGATTTTTATAATGATAATGGGTATTCAAACCAC
9820407 ACAGATTTTAGTGATAGTTGATAAATGACGGTATTAGCACTATCGATGTAAACCATATAGTGTTT
131 ACAGATTTTAGTGATAGTTGATAAATGACGGTATTAGCACTATCGATGTAAACCATATAGTGTTT
*
9820472 ATTGAATTGAAAGAATCTCTAGATGAACTGTTGTATAGGCACTAAGTGTGTATCTTAATAAATGA
196 ATTGAATTGAAAGAATCTCTAGATGAACTGCTGTATAGGCACTAAGTGTGTATCTTAATAAATGA
9820537 ACAGGAATAAGAAGTTGGTAAATTACCATGTGAGCACTAAGGGTGTAAATGTATAAATAAATTAA
261 ACAGGAATAAGAAGTTGGTAAATTACCATGTGAGCACTAAGGGTGTAAATGTATAAATAAATTAA
9820602 ATAGAGTTAATTGATATTAAAAGTATGTATTAGAGTAGAAACTATTCCAAACTAAAAGATTAAAG
326 ATAGAGTTAATTGATATTAAAAGTATGTATTAGAGTAGAAACTATTCCAAACTAAAAGATTAAAG
* *
9820667 GCCTAACTGTGCATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
391 GCCTAACTATGCATTTGACAAAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
* *
9820732 GAGGCCTAACTGTTCATTTGACAGAAAGGTGTCAAATATGTAGTTAGATGAAAGGCTAAGAGCCT
456 GAGGCCTAACTGTTCATTTGACAAAAAGGTGTCAAATATGCAGTTAGATGAAAGGCTAAGAGCCT
9820797 TTGAGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTG
521 TTGAGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTG
9820862 CCTTTGATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAA
586 CCTTTGATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAA
* * * *
9820927 GTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGC
651 GTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAAATATGCAAATTAGATGAAAGAC
9820992 TA
716 TA
9820994 ATTGGGCACTTTGTGTGCTAAAATGATAGAAAAGTGTATGAATTTCCGTATGGGAAATATATGTG
1 ATTGGGCACTTTGTGTGCTAAAATGATAGAAAAGTGTATGAATTTCCGTATGGGAAATATATGTG
9821059 TATAAACATAAGAAATTCGTAATAAGGAAATGGATTTTTATAATGATAATGGGTATTCAAACCAC
66 TATAAACATAAGAAATTCGTAATAAGGAAATGGATTTTTATAATGATAATGGGTATTCAAACCAC
*
9821124 ACAGATTTTAGTGATGGTTGATAAATGACGGTATTAGCACTATCGATGTAAACCATATAGTGTTT
131 ACAGATTTTAGTGATAGTTGATAAATGACGGTATTAGCACTATCGATGTAAACCATATAGTGTTT
9821189 ATTGAATTGAAAGAATCTCTAGATGAACTGCTGTATAGGCACTAAGTGTGTATCTTAATAAATGA
196 ATTGAATTGAAAGAATCTCTAGATGAACTGCTGTATAGGCACTAAGTGTGTATCTTAATAAATGA
9821254 ACAGGAATAAGAAGTTGGTAAATTACCATGTGAGCACTAAGGGTGTAAATGTATAAATAAATTAA
261 ACAGGAATAAGAAGTTGGTAAATTACCATGTGAGCACTAAGGGTGTAAATGTATAAATAAATTAA
9821319 ATAGAGTTAATTGATATTAAAAGTATGTATTAGAGTAGAAACTATTCCAAACTAAAAGATTAAAG
326 ATAGAGTTAATTGATATTAAAAGTATGTATTAGAGTAGAAACTATTCCAAACTAAAAGATTAAAG
*
9821384 GCCTAACTATGTATTTGACAAAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
391 GCCTAACTATGCATTTGACAAAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
9821449 GAGGCCTAACTGTTCATTTGACAAAAAGGTGTCAAATATGCAGTTAGATGAAAGGCTAAGAGCCT
456 GAGGCCTAACTGTTCATTTGACAAAAAGGTGTCAAATATGCAGTTAGATGAAAGGCTAAGAGCCT
9821514 TTGAGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTG
521 TTGAGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTG
9821579 CCTTTGATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAA
586 CCTTTGATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAA
9821644 GTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAAATATGCAAATTAGATGAAAGAC
651 GTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAAATATGCAAATTAGATGAAAGAC
9821709 TA
716 TA
9821711 A
1 A
9821712 GTGCCTTTGA
Statistics
Matches: 705, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
717 705 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (717 bp):
ATTGGGCACTTTGTGTGCTAAAATGATAGAAAAGTGTATGAATTTCCGTATGGGAAATATATGTG
TATAAACATAAGAAATTCGTAATAAGGAAATGGATTTTTATAATGATAATGGGTATTCAAACCAC
ACAGATTTTAGTGATAGTTGATAAATGACGGTATTAGCACTATCGATGTAAACCATATAGTGTTT
ATTGAATTGAAAGAATCTCTAGATGAACTGCTGTATAGGCACTAAGTGTGTATCTTAATAAATGA
ACAGGAATAAGAAGTTGGTAAATTACCATGTGAGCACTAAGGGTGTAAATGTATAAATAAATTAA
ATAGAGTTAATTGATATTAAAAGTATGTATTAGAGTAGAAACTATTCCAAACTAAAAGATTAAAG
GCCTAACTATGCATTTGACAAAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
GAGGCCTAACTGTTCATTTGACAAAAAGGTGTCAAATATGCAGTTAGATGAAAGGCTAAGAGCCT
TTGAGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTG
CCTTTGATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAA
GTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAAATATGCAAATTAGATGAAAGAC
TA
Found at i:9821790 original size:68 final size:68
Alignment explanation
Indices: 9821382--9821771 Score: 557
Period size: 68 Copynumber: 5.8 Consensus size: 68
9821372 AAAAGATTAA
* * *
9821382 AGGCCTAACTATGTATTTGACAAAAATGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9821447 TTG
66 TTG
* * *
9821450 AGGCCTAACTGTTCATTTGACAAAAAGGTGTCAAATATG-CAGTTAGATGAAAGGCTAAGAGCCT
1 AGGCCTAACTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9821514 TTG
66 TTG
* * *
9821517 AGGCCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATAAAAGGCTATGTGCCT
1 AGGCCTAACTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9821582 TTG
66 TTG
* * * * *
9821585 ATGCCTAACTATGCATTTGACAGAAAGATGTCAATTATGTCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9821650 TTG
66 TTG
* * * * *
9821653 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCAAATATGCAAATTAGATGAAAGACTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
9821718 TTG
66 TTG
* * * * *
9821721 AGGCCTAACTGTGTATTTGACATAATGGTGCCAATTATACCAGTTAGATGA
1 AGGCCTAACTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGA
9821772 GCAGTTAATT
Statistics
Matches: 286, Mismatches: 35, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
67 63 0.22
68 223 0.78
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:9821927 original size:79 final size:79
Alignment explanation
Indices: 9821791--9822247 Score: 752
Period size: 79 Copynumber: 5.8 Consensus size: 79
9821781 TACCGTTGAG
*
9821791 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAACGGATGCCATAGCTGAAATGTATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
*
9821856 GTACATTGTCAACA
66 GTACATTGTCAGCA
* *
9821870 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTTAAATGTATATAG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
*
9821935 GTATATTGTCAGCA
66 GTACATTGTCAGCA
* * *
9821949 TAAAAGAATAATGTATATGGGTGCATTATTGGCATGAAAGGATGCTATAGATGAAATGTATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
*
9822014 GTACATTGTGAGCA
66 GTACATTGTCAGCA
* *
9822028 TAAAAGAATAATGCATATGGGTGCATTATTGGTATGAAAGGATGCCATAGCTGAAATGTATATGT
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
*
9822093 GTACATTGTGAGCA
66 GTACATTGTCAGCA
*
9822107 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATATATATGG
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
* *
9822172 GTACATTGTTAGTA
66 GTACATTGTCAGCA
* **
9822186 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAAGATGCCATAAATGAAATGTATA
1 TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATA
9822248 ACGGTATATA
Statistics
Matches: 352, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 352 1.00
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (79 bp):
TAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGTATATGG
GTACATTGTCAGCA
Found at i:9822277 original size:45 final size:44
Alignment explanation
Indices: 9822215--9822312 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 44
9822205 GGTGCATTAT
* *
9822215 TGGCATGAAAAGATGCCATAAATGAAATGTATAACGGTATATAAAA
1 TGGCAT-AAAAGATGCCATAAATAAAATGTATAACAGTATAT-AAA
*
9822261 T-GCATAAAATGATGCCATAAATAAAATGTATAATAGTATATAAA
1 TGGCATAAAA-GATGCCATAAATAAAATGTATAACAGTATATAAA
9822305 TGGCATAA
1 TGGCATAA
9822313 TGATGCATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
44 8 0.17
45 38 0.81
46 1 0.02
ACGTcount: A:0.49, C:0.08, G:0.16, T:0.27
Consensus pattern (44 bp):
TGGCATAAAAGATGCCATAAATAAAATGTATAACAGTATATAAA
Found at i:9826140 original size:28 final size:30
Alignment explanation
Indices: 9826078--9826136 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
9826068 AAAAAATGAC
9826078 ACAAATAAAAAAGAAGAAATAAGTTAGTGTAT
1 ACAAATAAAAAAGAAGAAATAAGTTAG-G-AT
*
9826110 ACAAATAAAAGAA-AAGAAATTAGTTAG
1 ACAAATAAAA-AAGAAGAAATAAGTTAG
9826137 TACAGGTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
32 23 0.92
33 2 0.08
ACGTcount: A:0.61, C:0.03, G:0.15, T:0.20
Consensus pattern (30 bp):
ACAAATAAAAAAGAAGAAATAAGTTAGGAT
Found at i:9828015 original size:29 final size:29
Alignment explanation
Indices: 9827983--9828167 Score: 151
Period size: 29 Copynumber: 6.3 Consensus size: 29
9827973 AAATAAAAAT
* *
9827983 AATAGAAACTTAAAGGATTAAATTGCAAA
1 AATAGAAACTTAAAGGATAAAATAGCAAA
* *
9828012 AATAGAAAGTTAAGGGACT-AAATAGCAAA
1 AATAGAAACTTAAAGGA-TAAAATAGCAAA
* * * *
9828041 TACAGAAATTTAGAGGACTAAAATAGACAAA
1 AATAGAAACTTAAAGGA-TAAAATAG-CAAA
*
9828072 AATA-AAACTT-AAGGATAAAAATGGCAAA
1 AATAGAAACTTAAAGGAT-AAAATAGCAAA
* ** *
9828100 AATAGAAACTTAAAGGGCTAAAATAATACA
1 AATAGAAACTTAAA-GGATAAAATAGCAAA
* * *
9828130 AACATAAATTTAAAGGACTAAAATAGCAAA
1 AATAGAAACTTAAAGGA-TAAAATAGCAAA
9828160 AATAGAAA
1 AATAGAAA
9828168 TTTGAAGGGC
Statistics
Matches: 121, Mismatches: 27, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
28 9 0.07
29 56 0.46
30 47 0.39
31 9 0.07
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (29 bp):
AATAGAAACTTAAAGGATAAAATAGCAAA
Found at i:9828080 original size:88 final size:89
Alignment explanation
Indices: 9827958--9828167 Score: 236
Period size: 88 Copynumber: 2.4 Consensus size: 89
9827948 ACATATTCGA
* * * *
9827958 AAATTTAAGGGAAC-AAAATA-AAAATAATAGAAACTTAAAGGAT-TAAATTGCAAAAATAGAAA
1 AAATTTAAAGG-ACTAAAATAGCAAA-AATAGAAACTT-AAGGATAAAAATGGCAAAAATAGAAA
* *
9828020 GTT-AAGGGACT-AAATAGCA-AATACAG
63 CTTAAAGGG-CTAAAATAACACAA-ACAG
*
9828046 AAATTTAGAGGACTAAAATAGACAAAAATA-AAACTTAAGGATAAAAATGGCAAAAATAGAAACT
1 AAATTTAAAGGACTAAAATAG-CAAAAATAGAAACTTAAGGATAAAAATGGCAAAAATAGAAACT
* *
9828110 TAAAGGGCTAAAATAATACAAACAT
65 TAAAGGGCTAAAATAACACAAACAG
9828135 AAATTTAAAGGACTAAAATAGCAAAAATAGAAA
1 AAATTTAAAGGACTAAAATAGCAAAAATAGAAA
9828168 TTTGAAGGGC
Statistics
Matches: 104, Mismatches: 10, Indels: 15
0.81 0.08 0.12
Matches are distributed among these distances:
87 8 0.08
88 50 0.48
89 41 0.39
90 5 0.05
ACGTcount: A:0.59, C:0.08, G:0.14, T:0.20
Consensus pattern (89 bp):
AAATTTAAAGGACTAAAATAGCAAAAATAGAAACTTAAGGATAAAAATGGCAAAAATAGAAACTT
AAAGGGCTAAAATAACACAAACAG
Found at i:9828084 original size:59 final size:60
Alignment explanation
Indices: 9827983--9828175 Score: 175
Period size: 59 Copynumber: 3.3 Consensus size: 60
9827973 AAATAAAAAT
* * * *
9827983 AATAGAAACTTAAAGGA-TTAAAT-TG-CAAAAATAGAAAGTTAAGGGACT-AAATAGCAAA
1 AATAGAAATTTAAAGGACTAAAATAAGACAAAAATA-AAACTTAA-GGACTAAAATAGCAAA
* * * *
9828041 TACAGAAATTTAGAGGACTAAAAT-AGACAAAAATAAAACTTAAGGA-TAAAAATGGCAAA
1 AATAGAAATTTAAAGGACTAAAATAAGACAAAAATAAAACTTAAGGACT-AAAATAGCAAA
* * * * *
9828100 AATAGAAACTTAAAGGGCTAAAATAATACAAACAT-AAATTTAAAGGACTAAAATAGCAAA
1 AATAGAAATTTAAAGGACTAAAATAAGACAAAAATAAAACTT-AAGGACTAAAATAGCAAA
*
9828160 AATAGAAATTTGAAGG
1 AATAGAAATTTAAAGG
9828176 GCTGAATAGT
Statistics
Matches: 109, Mismatches: 19, Indels: 12
0.78 0.14 0.09
Matches are distributed among these distances:
57 1 0.01
58 16 0.15
59 46 0.42
60 45 0.41
61 1 0.01
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (60 bp):
AATAGAAATTTAAAGGACTAAAATAAGACAAAAATAAAACTTAAGGACTAAAATAGCAAA
Found at i:9828169 original size:30 final size:30
Alignment explanation
Indices: 9827958--9828175 Score: 171
Period size: 30 Copynumber: 7.4 Consensus size: 30
9827948 ACATATTCGA
* *
9827958 AAATTTAAGGGAAC-AAAATA-AAAATAATAG
1 AAATTTAAAGG-ACTAAAATAGCAAA-AATAG
* * *
9827988 AAACTTAAAGGA-TTAAATTGCAAAAATAG
1 AAATTTAAAGGACTAAAATAGCAAAAATAG
* * * *
9828017 AAAGTTAAGGGACT-AAATAGCAAATACAG
1 AAATTTAAAGGACTAAAATAGCAAAAATAG
*
9828046 AAATTTAGAGGACTAAAATAGACAAAAATA-
1 AAATTTAAAGGACTAAAATAG-CAAAAATAG
* *
9828076 AAACTT-AAGGA-TAAAAATGGCAAAAATAG
1 AAATTTAAAGGACT-AAAATAGCAAAAATAG
* * ** * * *
9828105 AAACTTAAAGGGCTAAAATAATACAAACAT
1 AAATTTAAAGGACTAAAATAGCAAAAATAG
9828135 AAATTTAAAGGACTAAAATAGCAAAAATAG
1 AAATTTAAAGGACTAAAATAGCAAAAATAG
*
9828165 AAATTTGAAGG
1 AAATTTAAAGG
9828176 GCTGAATAGT
Statistics
Matches: 146, Mismatches: 33, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
28 9 0.06
29 59 0.40
30 71 0.49
31 7 0.05
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.20
Consensus pattern (30 bp):
AAATTTAAAGGACTAAAATAGCAAAAATAG
Found at i:9837138 original size:3 final size:3
Alignment explanation
Indices: 9837130--9837169 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
9837120 AAATTTAAAC
9837130 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9837170 AAAGTTTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9837659 original size:28 final size:27
Alignment explanation
Indices: 9837617--9837669 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
9837607 CTTAACCCTT
*
9837617 TAGTATCTAAACTAAGATAGTTACAAAG
1 TAGTATCTAAACTAA-ATACTTACAAAG
* *
9837645 TAGTATCTGACCTAAATACTTACAA
1 TAGTATCTAAACTAAATACTTACAA
9837670 CCATTTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (27 bp):
TAGTATCTAAACTAAATACTTACAAAG
Found at i:9837886 original size:31 final size:31
Alignment explanation
Indices: 9837851--9837936 Score: 163
Period size: 31 Copynumber: 2.8 Consensus size: 31
9837841 TTGTTTTGAA
*
9837851 AAAATTGAAAGTTTAGGTACTAAAATGGATC
1 AAAATTGATAGTTTAGGTACTAAAATGGATC
9837882 AAAATTGATAGTTTAGGTACTAAAATGGATC
1 AAAATTGATAGTTTAGGTACTAAAATGGATC
9837913 AAAATTGATAGTTTAGGTACTAAA
1 AAAATTGATAGTTTAGGTACTAAA
9837937 CGAGCAATTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (31 bp):
AAAATTGATAGTTTAGGTACTAAAATGGATC
Found at i:9839420 original size:36 final size:38
Alignment explanation
Indices: 9839365--9839438 Score: 125
Period size: 36 Copynumber: 2.0 Consensus size: 38
9839355 AAAAATCGGC
*
9839365 TTTTGAAAATATATATAATATATAGTTTTGAAA-ATAT
1 TTTTGAAAACATATATAATATATAGTTTTGAAACATAT
9839402 TTTTG-AAACATATATAATATATAGTTTTGAAACATAT
1 TTTTGAAAACATATATAATATATAGTTTTGAAACATAT
9839439 ATAATATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (38 bp):
TTTTGAAAACATATATAATATATAGTTTTGAAACATAT
Found at i:9839430 original size:24 final size:24
Alignment explanation
Indices: 9839402--9839457 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
9839392 TTGAAAATAT
9839402 TTTTGAAACATATATAATATATAG
1 TTTTGAAACATATATAATATATAG
9839426 TTTTGAAACATATATAATATATAG
1 TTTTGAAACATATATAATATATAG
9839450 TTTTGAAA
1 TTTTGAAA
9839458 ACATTTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.43
Consensus pattern (24 bp):
TTTTGAAACATATATAATATATAG
Found at i:9839444 original size:60 final size:60
Alignment explanation
Indices: 9839365--9839483 Score: 188
Period size: 60 Copynumber: 2.0 Consensus size: 60
9839355 AAAAATCGGC
* *
9839365 TTTTGAAAATATATATAATATATAGTTTTGAAAATATTTTTGAAACATATATA-ATATATAG
1 TTTTGAAAACATATATAATATATAGTTTTGAAAACA-TTTTGAAA-ATATATATATATATAG
9839426 TTTTG-AAACATATATAATATATAGTTTTGAAAACATTTTGAAAATATATATATATATA
1 TTTTGAAAACATATATAATATATAGTTTTGAAAACATTTTGAAAATATATATATATATA
9839484 TATATATATA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
58 7 0.13
59 15 0.27
60 28 0.51
61 5 0.09
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (60 bp):
TTTTGAAAACATATATAATATATAGTTTTGAAAACATTTTGAAAATATATATATATATAG
Found at i:9839476 original size:2 final size:2
Alignment explanation
Indices: 9839469--9839512 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
9839459 CATTTTGAAA
9839469 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9839511 AT
1 AT
9839513 TTTTAAAACG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9839537 original size:34 final size:35
Alignment explanation
Indices: 9839499--9839583 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 35
9839489 ATATATATAT
*
9839499 ATATATATATATATTTTTA-AAA-CGTGTTTGGAAA
1 ATATATATATATATTTTTAGAAAGCATG-TTGGAAA
*
9839533 ATATATA-ATGTATATTTTAGAAAGCATGTTGGAAA
1 ATATATATATATAT-TTTTAGAAAGCATGTTGGAAA
9839568 ACTATATATA-ATATTT
1 A-TATATATATATATTT
9839584 GGGTTTTGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
33 5 0.12
34 12 0.28
35 13 0.30
36 12 0.28
37 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (35 bp):
ATATATATATATATTTTTAGAAAGCATGTTGGAAA
Found at i:9839550 original size:35 final size:36
Alignment explanation
Indices: 9839497--9839581 Score: 97
Period size: 36 Copynumber: 2.4 Consensus size: 36
9839487 ATATATATAT
*
9839497 ATATATATATATATATTTTTA-AAA-CGTGTTTGGAAA
1 ATATATATATATATA-TTTTAGAAAGCATG-TTGGAAA
*
9839533 ATATATA-ATGTATATTTTAGAAAGCATGTTGGAAA
1 ATATATATATATATATTTTAGAAAGCATGTTGGAAA
9839568 ACTATATATA-ATAT
1 A-TATATATATATAT
9839582 TTGGGTTTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
34 5 0.12
35 17 0.40
36 19 0.45
37 1 0.02
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.41
Consensus pattern (36 bp):
ATATATATATATATATTTTAGAAAGCATGTTGGAAA
Found at i:9839648 original size:17 final size:17
Alignment explanation
Indices: 9839626--9839689 Score: 51
Period size: 17 Copynumber: 3.5 Consensus size: 17
9839616 ATAATATACC
9839626 TATTTTTTATTTTTTAT
1 TATTTTTTATTTTTTAT
9839643 TATTTTCCCCTTA-TTTTTAT
1 TATTTT----TTATTTTTTAT
*
9839663 T-TTATTTATTTTTTTATT
1 TATTTTTTA-TTTTTTA-T
9839681 TATTTTTTA
1 TATTTTTTA
9839690 GGGTCCAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
15 3 0.08
17 12 0.32
18 2 0.05
19 9 0.24
20 8 0.22
21 3 0.08
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTTTATTTTTTAT
Found at i:9839677 original size:12 final size:12
Alignment explanation
Indices: 9839653--9839688 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
9839643 TATTTTCCCC
*
9839653 TTATTT-TTATT
1 TTATTTATTTTT
9839664 TTATTTATTTTT
1 TTATTTATTTTT
9839676 TTATTTATTTTT
1 TTATTTATTTTT
9839688 T
1 T
9839689 AGGGTCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (12 bp):
TTATTTATTTTT
Found at i:9839686 original size:11 final size:11
Alignment explanation
Indices: 9839631--9839689 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 11
9839621 ATACCTATTT
9839631 TTTATTTTTTA
1 TTTATTTTTTA
9839642 -TTATTTTCCCCTTA
1 TTTATTTT----TTA
9839656 TTT-TTATTTTA
1 TTTATT-TTTTA
9839667 TTTATTTTTTTA
1 TTTA-TTTTTTA
9839679 TTTATTTTTTA
1 TTTATTTTTTA
9839690 GGGTCCAATA
Statistics
Matches: 40, Mismatches: 0, Indels: 16
0.71 0.00 0.29
Matches are distributed among these distances:
10 7 0.17
11 13 0.32
12 9 0.22
13 2 0.05
14 5 0.12
15 4 0.10
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTATTTTTTA
Found at i:9840332 original size:9 final size:9
Alignment explanation
Indices: 9840320--9840349 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
9840310 TTATTATTAA
9840320 TTTTTTTCT
1 TTTTTTTCT
9840329 TTTTTTTCT
1 TTTTTTTCT
*
9840338 TTTTTCTCT
1 TTTTTTTCT
9840347 TTT
1 TTT
9840350 AATCTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:9840355 original size:17 final size:16
Alignment explanation
Indices: 9840316--9840360 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
9840306 ATTATTATTA
9840316 TTAAT-TTTTTTCTTT
1 TTAATCTTTTTTCTTT
**
9840331 TTTTTCTTTTTTCTCTT
1 TTAATCTTTTTTCT-TT
9840348 TTAATCTTTTTTC
1 TTAATCTTTTTTC
9840361 CTCATCGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 3 0.12
16 8 0.33
17 13 0.54
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (16 bp):
TTAATCTTTTTTCTTT
Found at i:9841180 original size:18 final size:19
Alignment explanation
Indices: 9841157--9841198 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
9841147 GTAATAAAAT
*
9841157 ATTAAAATAA-TAAAAGCG
1 ATTAAAATAAGTAAAAGCA
9841175 ATT-AAATAAGTAAAAGCA
1 ATTAAAATAAGTAAAAGCA
9841193 ATTAAA
1 ATTAAA
9841199 GTAAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 13 0.62
19 2 0.10
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (19 bp):
ATTAAAATAAGTAAAAGCA
Found at i:9842944 original size:21 final size:21
Alignment explanation
Indices: 9842901--9842947 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
9842891 TCTCACTAAC
*
9842901 TTTTTTTTCCTTTCCTTTCAT
1 TTTTTTTTCCTTTACTTTCAT
*
9842922 TTTTGTTTTCTTTTACTTT-AT
1 TTTT-TTTTCCTTTACTTTCAT
9842943 TTTTT
1 TTTTT
9842948 ATTATTTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 10 0.43
22 12 0.52
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTTTTTCCTTTACTTTCAT
Found at i:9844698 original size:99 final size:99
Alignment explanation
Indices: 9844584--9844773 Score: 308
Period size: 99 Copynumber: 1.9 Consensus size: 99
9844574 TTATAATATT
* ** * *
9844584 ATATGTATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATGG
1 ATATATATACAATAAAGCTTGAACTGTCCCTCTAGAACAATTGGTTAAACGCCACGACTTTATGG
9844649 ATAAGATTCAGCTAGCCTGATAAAGGTGATTATA
66 ATAAGATTCAGCTAGCCTGATAAAGGTGATTATA
* * *
9844683 ATATATATACAATAAAGCTTGAACTGTCCCTCTAGAACAATTGGTTAAATGTCACGGCTTTATGG
1 ATATATATACAATAAAGCTTGAACTGTCCCTCTAGAACAATTGGTTAAACGCCACGACTTTATGG
9844748 ATAAGATTCAGCTAGCCTGATAAAGG
66 ATAAGATTCAGCTAGCCTGATAAAGG
9844774 CAAATTACAA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 83 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (99 bp):
ATATATATACAATAAAGCTTGAACTGTCCCTCTAGAACAATTGGTTAAACGCCACGACTTTATGG
ATAAGATTCAGCTAGCCTGATAAAGGTGATTATA
Found at i:9846537 original size:64 final size:63
Alignment explanation
Indices: 9846328--9846537 Score: 223
Period size: 65 Copynumber: 3.3 Consensus size: 63
9846318 TTTATCAAAG
*
9846328 TGATGCATCGATGCACCAATCCATGCATCGATGCAC-CAT-GAATTAAATTG-AACATCGAATGC
1 TGATGCATCGATGCACCAA-CCATGCATCGATGCACTC-TGGTATT---TTGAAACATCGAATGC
9846390 ATT
61 ATT
* * **
9846393 TCATGCATCGATGCA-CATACCATGCACCGATGCACTGAGG-ATTTTAAGAAAACATCGAATGCA
1 TGATGCATCGATGCACCA-ACCATGCATCGATGCACTCTGGTATTTT--G-AAACATCGAATGCA
9846456 TT
62 TT
* *
9846458 TGATGCATCGATGCACCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGCACT
1 TGATGCATCGATGCACCAACCATGCATCGATGCACTCTGG-TATTTTGAAACATCGAATGCATT
*
9846522 TGATGCATAGATGCAC
1 TGATGCATCGATGCAC
9846538 TCTTAGTGCA
Statistics
Matches: 124, Mismatches: 11, Indels: 21
0.79 0.07 0.13
Matches are distributed among these distances:
61 2 0.02
63 1 0.01
64 50 0.40
65 64 0.52
66 2 0.02
67 5 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (63 bp):
TGATGCATCGATGCACCAACCATGCATCGATGCACTCTGGTATTTTGAAACATCGAATGCATT
Found at i:9852391 original size:23 final size:22
Alignment explanation
Indices: 9852323--9852401 Score: 83
Period size: 21 Copynumber: 3.6 Consensus size: 22
9852313 CACCTAACAT
*
9852323 TGCATCTATGCATCC-TTGAATG
1 TGCATCGATGCA-CCATTGAATG
* *
9852345 TGCATCGATACACCA-TGAAGG
1 TGCATCGATGCACCATTGAATG
9852366 TGCA-CTGATGCACGCATTGAATG
1 TGCATC-GATGCAC-CATTGAATG
9852389 TGCATCGATGCAC
1 TGCATCGATGCAC
9852402 AAGGCCATGC
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.02
21 17 0.36
22 12 0.26
23 16 0.34
24 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (22 bp):
TGCATCGATGCACCATTGAATG
Found at i:9859775 original size:21 final size:21
Alignment explanation
Indices: 9859733--9859776 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
9859723 ACCCCGGGAG
*
9859733 CTAGCTCTTCACGAGCTGCTC
1 CTAGCTCTTCACGAGCTCCTC
* *
9859754 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGAGCTCCTC
9859775 CT
1 CT
9859777 TCTCCTCTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.16, T:0.34
Consensus pattern (21 bp):
CTAGCTCTTCACGAGCTCCTC
Found at i:9862536 original size:36 final size:36
Alignment explanation
Indices: 9862496--9862616 Score: 190
Period size: 36 Copynumber: 3.3 Consensus size: 36
9862486 AAAAATCGGT
9862496 TTTTGAAAATAAATATAATATATAGTTTTGAAAACA
1 TTTTGAAAATAAATATAATATATAGTTTTGAAAACA
* *
9862532 TTTTGAAAATATATATAATATATAATTTTGAAAACA
1 TTTTGAAAATAAATATAATATATAGTTTTGAAAACA
*
9862568 TTTTTG-AAATATATATAATATATAGTTTTGAAAACA
1 -TTTTGAAAATAAATATAATATATAGTTTTGAAAACA
9862604 TTTTGAAATATAA
1 TTTTGAAA-ATAA
9862617 TAGTTGAGTT
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
35 5 0.06
36 65 0.83
37 8 0.10
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.42
Consensus pattern (36 bp):
TTTTGAAAATAAATATAATATATAGTTTTGAAAACA
Found at i:9866226 original size:13 final size:15
Alignment explanation
Indices: 9866208--9866239 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9866198 TGTTATGATT
9866208 TGTTAAA-G-TAAAA
1 TGTTAAACGATAAAA
9866221 TGTTAAACGATAAAA
1 TGTTAAACGATAAAA
9866236 TGTT
1 TGTT
9866240 CTTTAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 1 0.06
15 9 0.53
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (15 bp):
TGTTAAACGATAAAA
Found at i:9869737 original size:3 final size:3
Alignment explanation
Indices: 9869729--9869792 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
9869719 CGTGAGTGAG
9869729 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
9869777 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
9869793 ATGTCCGTGA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9874000 original size:22 final size:19
Alignment explanation
Indices: 9873975--9874024 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 19
9873965 TTTAATGCTC
*
9873975 GGTCAACGCTGGTCAAAGTTCT
1 GGTCAACG-TGGTC-AA-TACT
9873997 GGTCAACAGTGGTCAATACT
1 GGTCAAC-GTGGTCAATACT
9874017 GGTCAACG
1 GGTCAACG
9874025 GTCAACAGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 1 0.04
20 10 0.38
21 2 0.08
22 12 0.46
23 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (19 bp):
GGTCAACGTGGTCAATACT
Found at i:9879595 original size:21 final size:20
Alignment explanation
Indices: 9879554--9879606 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
9879544 GGCTTCGGAT
* *
9879554 TATAAGAAATTATTTTTAAAA
1 TATAA-AAATGATTTTCAAAA
9879575 TATAAAAATGATGTTTCAAAA
1 TATAAAAATGAT-TTTCAAAA
9879596 T-TGAAAAATGA
1 TAT-AAAAATGA
9879607 AAACAAATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 7 0.25
21 21 0.75
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (20 bp):
TATAAAAATGATTTTCAAAA
Found at i:9888647 original size:10 final size:10
Alignment explanation
Indices: 9888632--9888698 Score: 52
Period size: 10 Copynumber: 6.8 Consensus size: 10
9888622 ATTAATTCCC
9888632 GGTCAACGCT
1 GGTCAACGCT
*
9888642 GGTCAAAGTTCT
1 GGTCAACG--CT
9888654 GGTCAACAG-T
1 GGTCAAC-GCT
*
9888664 GTTCAACGCT
1 GGTCAACGCT
9888674 GGTCAA--C-
1 GGTCAACGCT
*
9888681 GGTCAACGCA
1 GGTCAACGCT
9888691 GGTCAACG
1 GGTCAACG
9888699 GTCAACAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
7 6 0.13
8 1 0.02
9 2 0.04
10 28 0.61
12 8 0.17
13 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.21
Consensus pattern (10 bp):
GGTCAACGCT
Found at i:9888688 original size:17 final size:17
Alignment explanation
Indices: 9888652--9888704 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 17
9888642 GGTCAAAGTT
9888652 CTGGTCAACAGTGTTCAACG
1 CTGGTCAAC-G-G-TCAACG
9888672 CTGGTCAACGGTCAACG
1 CTGGTCAACGGTCAACG
*
9888689 CAGGTCAACGGTCAAC
1 CTGGTCAACGGTCAAC
9888705 AATCGACCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 21 0.66
18 1 0.03
19 1 0.03
20 9 0.28
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.19
Consensus pattern (17 bp):
CTGGTCAACGGTCAACG
Found at i:9891817 original size:14 final size:15
Alignment explanation
Indices: 9891791--9891820 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
9891781 ATAGATACTG
9891791 ATAAAACTAAACTAA
1 ATAAAACTAAACTAA
9891806 ATAAAA-TAAACTAA
1 ATAAAACTAAACTAA
9891820 A
1 A
9891821 AATAGTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (15 bp):
ATAAAACTAAACTAA
Found at i:9899747 original size:2 final size:2
Alignment explanation
Indices: 9899740--9899788 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
9899730 TAAAGTATCA
9899740 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
9899782 AA AT AT A
1 AT AT AT A
9899789 AAATAAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:9906516 original size:183 final size:184
Alignment explanation
Indices: 9906194--9906562 Score: 627
Period size: 183 Copynumber: 2.0 Consensus size: 184
9906184 AAGTAAATGG
* * *
9906194 TTTTTAATTCAAAAAAAGTTTATACTTAATTTAAATAATATATAATTATAAAATAAAAATTTCAG
1 TTTTTAATTAAAAAAAAGTTTACAATTAATTTAAATAATATATAATTATAAAATAAAAATTTCAG
* **
9906259 ATAAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTTTTGGATCTTAAATTATTAATT
66 ATAAATATTTTAATTAATTAATATTGATTTAGGTTTAAAAGTAATTGGATCTTAAATTATTAATT
9906324 GGATTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATAT
131 GGATTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATAT
9906378 TTTTTAATTAAAAAAACAGTTTACAATTAATTTAAATAATATATAATTATAAAATAAAAAATTT-
1 TTTTTAATTAAAAAAA-AGTTTACAATTAATTTAAATAATATATAATTATAAAAT-AAAAATTTC
*
9906442 ATATAAA-ATTTTAATTAATTAATATTGATTTAGGTTT-AAAGTAATTGGATCTTAAATTATTAA
64 AGATAAATATTTTAATTAATTAATATTGATTTAGGTTTAAAAGTAATTGGATCTTAAATTATTAA
*
9906505 TTGGGTTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATAT
129 TTGGATTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATAT
9906561 TT
1 TT
9906563 AATATTTAAT
Statistics
Matches: 175, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
183 81 0.46
184 44 0.25
185 42 0.24
186 8 0.05
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (184 bp):
TTTTTAATTAAAAAAAAGTTTACAATTAATTTAAATAATATATAATTATAAAATAAAAATTTCAG
ATAAATATTTTAATTAATTAATATTGATTTAGGTTTAAAAGTAATTGGATCTTAAATTATTAATT
GGATTTTAAATGGTTTGGGCTGAGCCCATATGTTATATATAATATATTTAATAT
Found at i:9909020 original size:2 final size:2
Alignment explanation
Indices: 9909013--9909041 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9909003 CATATCAACA
9909013 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9909042 ATAAAAGGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9909340 original size:24 final size:24
Alignment explanation
Indices: 9909308--9909357 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
9909298 AACATGGCTA
9909308 TTTGATTTTAGCGAGGATCACTGC
1 TTTGATTTTAGCGAGGATCACTGC
9909332 TTTGATTTTAGCGAGGATCACTGC
1 TTTGATTTTAGCGAGGATCACTGC
9909356 TT
1 TT
9909358 GAGAAAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (24 bp):
TTTGATTTTAGCGAGGATCACTGC
Found at i:9914177 original size:27 final size:30
Alignment explanation
Indices: 9914124--9914181 Score: 86
Period size: 27 Copynumber: 2.0 Consensus size: 30
9914114 AAAGGAAAAG
9914124 AAGAAATGGAAAGATAGAAGAAATGATTTA
1 AAGAAATGGAAAGATAGAAGAAATGATTTA
*
9914154 AAGAAAT-GAAA-ATA-AGGAAATGATTTA
1 AAGAAATGGAAAGATAGAAGAAATGATTTA
9914181 A
1 A
9914182 GAACTAGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 13 0.48
28 3 0.11
29 4 0.15
30 7 0.26
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (30 bp):
AAGAAATGGAAAGATAGAAGAAATGATTTA
Found at i:9915867 original size:9 final size:8
Alignment explanation
Indices: 9915850--9915891 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
9915840 TTTAATTTTG
9915850 TTTTTATA
1 TTTTTATA
9915858 TTTTTA-A
1 TTTTTATA
*
9915865 TATTTATA
1 TTTTTATA
9915873 TTTTTA-A
1 TTTTTATA
*
9915880 TATTTATA
1 TTTTTATA
9915888 TTTT
1 TTTT
9915892 AGTGACTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 12 0.43
8 16 0.57
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTTATA
Found at i:9915872 original size:15 final size:15
Alignment explanation
Indices: 9915852--9915891 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
9915842 TAATTTTGTT
9915852 TTTATATTTTTAATA
1 TTTATATTTTTAATA
9915867 TTTATATTTTTAATA
1 TTTATATTTTTAATA
9915882 TTTATATTTT
1 TTTATATTTT
9915892 AGTGACTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTATATTTTTAATA
Found at i:9916191 original size:20 final size:19
Alignment explanation
Indices: 9916166--9916203 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
9916156 GTGTCAATAA
9916166 TATTTATATTAAATATTTAG
1 TATTTATATTAAA-ATTTAG
9916186 TATTTATATTAAAATTTA
1 TATTTATATTAAAATTTA
9916204 AATATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
TATTTATATTAAAATTTAG
Found at i:9917235 original size:45 final size:47
Alignment explanation
Indices: 9917150--9917237 Score: 126
Period size: 45 Copynumber: 1.9 Consensus size: 47
9917140 TGTTATTTTA
* * * *
9917150 TTTTCTAAATAAATGCATGCGAACTAGAAATCATGTGGTTAGGTTAT
1 TTTTCCAAACAAATGCATGCGAACTAGAAAGCATGAGGTTAGGTTAT
9917197 TTTTCCAAACAAA-GCATG-GAACTAGAAAGCATGAGGTTAGG
1 TTTTCCAAACAAATGCATGCGAACTAGAAAGCATGAGGTTAGG
9917238 ATATGATTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 21 0.57
46 5 0.14
47 11 0.30
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTTCCAAACAAATGCATGCGAACTAGAAAGCATGAGGTTAGGTTAT
Found at i:9922391 original size:22 final size:22
Alignment explanation
Indices: 9922366--9922419 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
9922356 ATGTCTACAT
* *
9922366 TTTTTAAAGATGATAGATTCTC
1 TTTTCAAAGATGATAGATTATC
*
9922388 TTTTCAAAGATGGTAGATTATC
1 TTTTCAAAGATGATAGATTATC
9922410 TTTTCAAAGA
1 TTTTCAAAGA
9922420 CCAAAGCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (22 bp):
TTTTCAAAGATGATAGATTATC
Found at i:9923136 original size:96 final size:96
Alignment explanation
Indices: 9923007--9923264 Score: 337
Period size: 96 Copynumber: 2.7 Consensus size: 96
9922997 ATTCTCATTT
*
9923007 AGTTTCCATGGAAGAGTAGTGGAACGGT-TTTTTCAGCAAAGTATCAAACTTCACGGAAGAGTAG
1 AGTTTCCAAGGAAGAGTAGTGGAAC-GTATTTTTCAGCAAAGTATCAAACTTCACGGAAGAGTAG
* *
9923071 T-AAAGCATAAAGCAAGAACCATGA-TAAAAT-TC
65 TGAAA-CA-AAAGCAAGAA-CAAGACCAAAATCTC
* * *
9923103 AGTTTTCACGGAAGAGTAGTGGAACATATTTTTCAGCAAAGTATCAAACTTCACGGAAGAGTAGT
1 AGTTTCCAAGGAAGAGTAGTGGAACGTATTTTTCAGCAAAGTATCAAACTTCACGGAAGAGTAGT
*
9923168 GAAACAAAAGCAAGAACAAGACCAAAATCTG
66 GAAACAAAAGCAAGAACAAGACCAAAATCTC
* * * *
9923199 AG-CTCCAAGAAAGAGTAGTGGAACGGATTTTTCAGCAAAGTATGAGAACTTCACGGAAGAGTAG
1 AGTTTCCAAGGAAGAGTAGTGGAACGTATTTTTCAGCAAAGTATCA-AACTTCACGGAAGAGTAG
9923263 TG
65 TG
9923265 GAGTAATTCA
Statistics
Matches: 144, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
94 4 0.03
95 52 0.36
96 85 0.59
97 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (96 bp):
AGTTTCCAAGGAAGAGTAGTGGAACGTATTTTTCAGCAAAGTATCAAACTTCACGGAAGAGTAGT
GAAACAAAAGCAAGAACAAGACCAAAATCTC
Found at i:9923647 original size:15 final size:14
Alignment explanation
Indices: 9923623--9923661 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
9923613 CGAGTGACGT
9923623 TTATTATATACATTA
1 TTATT-TATACATTA
*
9923638 TTATATTATATATTA
1 TTAT-TTATACATTA
9923653 TTATTTATA
1 TTATTTATA
9923662 TAGCATGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 16 0.73
16 1 0.05
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATTTATACATTA
Found at i:9925065 original size:20 final size:19
Alignment explanation
Indices: 9925040--9925077 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
9925030 GTGTCAATAA
9925040 TATTTATATTAAATATTTAG
1 TATTTATATTAAA-ATTTAG
9925060 TATTTATATTAAAATTTA
1 TATTTATATTAAAATTTA
9925078 AATATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (19 bp):
TATTTATATTAAAATTTAG
Found at i:9934328 original size:28 final size:28
Alignment explanation
Indices: 9934297--9934380 Score: 168
Period size: 28 Copynumber: 3.0 Consensus size: 28
9934287 GTCATCCGAA
9934297 ACATTTCTTCTGAACTGAAAGCTTACTG
1 ACATTTCTTCTGAACTGAAAGCTTACTG
9934325 ACATTTCTTCTGAACTGAAAGCTTACTG
1 ACATTTCTTCTGAACTGAAAGCTTACTG
9934353 ACATTTCTTCTGAACTGAAAGCTTACTG
1 ACATTTCTTCTGAACTGAAAGCTTACTG
9934381 TCTTTTACTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (28 bp):
ACATTTCTTCTGAACTGAAAGCTTACTG
Found at i:9937098 original size:31 final size:32
Alignment explanation
Indices: 9937052--9937114 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
9937042 GGTCATCTTG
*
9937052 TAAAAAAAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAAAAAGATGAAATAACA-TAAGTTGAAAC
*
9937084 TAAAAGAAA-ATGAAATAACATAAGTTGAAAC
1 TAAAAAAAAGATGAAATAACATAAGTTGAAAC
9937115 ATTACATGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 17 0.61
32 8 0.29
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (32 bp):
TAAAAAAAAGATGAAATAACATAAGTTGAAAC
Found at i:9938111 original size:31 final size:32
Alignment explanation
Indices: 9938065--9938127 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
9938055 GGTCATCTTG
*
9938065 TAAAAAAAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAAAAAGATGAAATAACA-TAAGTTGAAAC
*
9938097 TAAAAGAAA-ATGAAATAACATAAGTTGAAAC
1 TAAAAAAAAGATGAAATAACATAAGTTGAAAC
9938128 ATTACATGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 17 0.61
32 8 0.29
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (32 bp):
TAAAAAAAAGATGAAATAACATAAGTTGAAAC
Found at i:9939123 original size:31 final size:31
Alignment explanation
Indices: 9939079--9939140 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
9939069 GGTCATCTTG
*
9939079 TAAAAAAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAAAAGATGAAATAACA-TAAGTTGAAAC
9939110 TAAAAGAAA-ATGAAATAACATAAGTTGAAAC
1 TAAAA-AAAGATGAAATAACATAAGTTGAAAC
9939141 ATTACATGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 3 0.11
31 22 0.79
32 3 0.11
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (31 bp):
TAAAAAAAGATGAAATAACATAAGTTGAAAC
Found at i:9940136 original size:31 final size:31
Alignment explanation
Indices: 9940092--9940153 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
9940082 GGTCATCTTG
*
9940092 TAAAAAAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAAAAGATGAAATAACA-TAAGTTGAAAC
9940123 TAAAAGAAA-ATGAAATAACATAAGTTGAAAC
1 TAAAA-AAAGATGAAATAACATAAGTTGAAAC
9940154 ATTACATGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 3 0.11
31 22 0.79
32 3 0.11
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (31 bp):
TAAAAAAAGATGAAATAACATAAGTTGAAAC
Found at i:9941141 original size:31 final size:31
Alignment explanation
Indices: 9941106--9941167 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
9941096 GGTCATCTTG
* * *
9941106 TAAAATAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAGAAAATGAAATAACA-TAAGTTGAAAC
9941137 TAAAAGAAAATGAAATAACATAAGTTGAAAC
1 TAAAAGAAAATGAAATAACATAAGTTGAAAC
9941168 ATTACATGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.58, C:0.08, G:0.11, T:0.23
Consensus pattern (31 bp):
TAAAAGAAAATGAAATAACATAAGTTGAAAC
Found at i:9942163 original size:31 final size:31
Alignment explanation
Indices: 9942119--9942180 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
9942109 GGTCATCTTG
*
9942119 TAAAAAAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAAAAGATGAAATAACA-TAAGTTGAAAC
9942150 TAAAAGAAA-ATGAAATAACATAAGTTGAAAC
1 TAAAA-AAAGATGAAATAACATAAGTTGAAAC
9942181 ATTACATGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 3 0.11
31 22 0.79
32 3 0.11
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (31 bp):
TAAAAAAAGATGAAATAACATAAGTTGAAAC
Found at i:9943179 original size:31 final size:32
Alignment explanation
Indices: 9943133--9943195 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
9943123 GGTCATCTTG
*
9943133 TAAAAAAAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAAAAAGATGAAATAACA-TAAGTTGAAAC
*
9943165 TAAAAGAAA-ATGAAATAACATAAGTTGAAAC
1 TAAAAAAAAGATGAAATAACATAAGTTGAAAC
9943196 ATTACATGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 17 0.61
32 8 0.29
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (32 bp):
TAAAAAAAAGATGAAATAACATAAGTTGAAAC
Found at i:9944192 original size:31 final size:32
Alignment explanation
Indices: 9944146--9944208 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
9944136 GGTCATCTTG
*
9944146 TAAAAAAAAGATGAAATCACATTAA-TTGAAAC
1 TAAAAAAAAGATGAAATAACA-TAAGTTGAAAC
*
9944178 TAAAAGAAA-ATGAAATAACATAAGTTGAAAC
1 TAAAAAAAAGATGAAATAACATAAGTTGAAAC
9944209 ATTACATGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 3 0.11
31 17 0.61
32 8 0.29
ACGTcount: A:0.60, C:0.08, G:0.11, T:0.21
Consensus pattern (32 bp):
TAAAAAAAAGATGAAATAACATAAGTTGAAAC
Found at i:9947975 original size:24 final size:24
Alignment explanation
Indices: 9947943--9947989 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
9947933 CACTTTCTTA
9947943 GTTTGAGAGTTTGAAAGTTCAAAC
1 GTTTGAGAGTTTGAAAGTTCAAAC
* *
9947967 GTTTGAGAGTTTGAGATTTCAAA
1 GTTTGAGAGTTTGAAAGTTCAAA
9947990 GATACTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (24 bp):
GTTTGAGAGTTTGAAAGTTCAAAC
Found at i:9948420 original size:83 final size:83
Alignment explanation
Indices: 9948281--9948630 Score: 434
Period size: 83 Copynumber: 4.2 Consensus size: 83
9948271 TCAGATGGGT
* * ** ** * *
9948281 TGAATAATAATGGAAAACGCTTCCCCTGGAATGCGCCTTTCATTTTGGATGAGATGAAGCACTAT
1 TGAATAATAATGGAAAACTCTTCCCCTAGAACACGCCTTTCATTTCAGATGGGATGAAACACTAT
* * *
9948346 AACATGGCAAAGATTCTC
66 GACATGACAGAGATTCTC
*
9948364 TGAATAATAATGGAAAACTCTTCCCCTATAACACGCCTTTCATTTCAGATGGGATGAAACACTAT
1 TGAATAATAATGGAAAACTCTTCCCCTAGAACACGCCTTTCATTTCAGATGGGATGAAACACTAT
*
9948429 GACATGACATAGATTCTC
66 GACATGACAGAGATTCTC
* * * * *
9948447 TGAATAATAATGGAAAACACTTCTCCTAGAACACACCTTTCATTTCAGAAGGGATGGAACACTAT
1 TGAATAATAATGGAAAACTCTTCCCCTAGAACACGCCTTTCATTTCAGATGGGATGAAACACTAT
9948512 GACATGACAGAGATTCTC
66 GACATGACAGAGATTCTC
* * * ***
9948530 TAAATAATAATGGAAAA-TGTTTCCCCTGGAATGTGCCTTTCATTTC-GAATGGGATGAAACACT
1 TGAATAATAATGGAAAACT-CTTCCCCTAGAACACGCCTTTCATTTCAG-ATGGGATGAAACACT
*
9948593 ATGACATGATAGAGATTCTC
64 ATGACATGACAGAGATTCTC
*
9948613 TAAATAATAATGGAAAAC
1 TGAATAATAATGGAAAAC
9948631 ACTATGACAA
Statistics
Matches: 233, Mismatches: 31, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
82 1 0.00
83 232 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
TGAATAATAATGGAAAACTCTTCCCCTAGAACACGCCTTTCATTTCAGATGGGATGAAACACTAT
GACATGACAGAGATTCTC
Found at i:9949989 original size:17 final size:17
Alignment explanation
Indices: 9949969--9950090 Score: 92
Period size: 17 Copynumber: 7.1 Consensus size: 17
9949959 TTTAACTAAG
9949969 TAGTTCATTGATTAAAC
1 TAGTTCATTGATTAAAC
9949986 TAGTTCA-TGCATTAAAC
1 TAGTTCATTG-ATTAAAC
* * *
9950003 TAATTCATTCATCAAAC
1 TAGTTCATTGATTAAAC
9950020 TAGTTCATTCAAGATT--AC
1 TAGTTCATT---GATTAAAC
* *
9950038 AAG-TCATTTGA-TAAAGT
1 TAGTTCA-TTGATTAAA-C
*
9950055 TAGTTCATTAATTAAAC
1 TAGTTCATTGATTAAAC
*
9950072 TAGTTCATTTATTAAAC
1 TAGTTCATTGATTAAAC
9950089 TA
1 TA
9950091 ACTCTTAATT
Statistics
Matches: 82, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
14 1 0.01
15 2 0.02
16 3 0.04
17 60 0.73
18 14 0.17
20 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (17 bp):
TAGTTCATTGATTAAAC
Found at i:9951124 original size:21 final size:21
Alignment explanation
Indices: 9951069--9951127 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
9951059 AATTGTTTAC
* *
9951069 TTTGATTAAATTAAATCATTTT
1 TTTGATTAAA-TAAATTATTAT
9951091 TTTGCAATT--ATAAATTATTAT
1 TTTG--ATTAAATAAATTATTAT
9951112 TTTGATTAAATAAATT
1 TTTGATTAAATAAATT
9951128 TGTTAGAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
19 3 0.10
21 20 0.65
22 5 0.16
24 3 0.10
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (21 bp):
TTTGATTAAATAAATTATTAT
Found at i:9953799 original size:2 final size:2
Alignment explanation
Indices: 9953792--9953869 Score: 156
Period size: 2 Copynumber: 39.0 Consensus size: 2
9953782 ACCTTGAATG
9953792 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9953834 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9953870 CCGTGTGCCT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 76 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9956571 original size:2 final size:2
Alignment explanation
Indices: 9956564--9956615 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
9956554 AAGTATAGCA
9956564 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9956606 AT AT AT AT AT
1 AT AT AT AT AT
9956616 GCAGAAATGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9957600 original size:24 final size:23
Alignment explanation
Indices: 9957573--9957622 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
9957563 AAAAGAACGA
9957573 AAATCATGCCACAAAGGCAGAGAT
1 AAAT-ATGCCACAAAGGCAGAGAT
*
9957597 AAATTTGCCACAAAGGCAGAGAT
1 AAATATGCCACAAAGGCAGAGAT
9957620 AAA
1 AAA
9957623 CGTGTCACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.48, C:0.18, G:0.20, T:0.14
Consensus pattern (23 bp):
AAATATGCCACAAAGGCAGAGAT
Found at i:9957605 original size:23 final size:23
Alignment explanation
Indices: 9957579--9957622 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
9957569 ACGAAAATCA
9957579 TGCCACAAAGGCAGAGATAAATT
1 TGCCACAAAGGCAGAGATAAATT
9957602 TGCCACAAAGGCAGAGATAAA
1 TGCCACAAAGGCAGAGATAAA
9957623 CGTGTCACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (23 bp):
TGCCACAAAGGCAGAGATAAATT
Found at i:9957631 original size:23 final size:23
Alignment explanation
Indices: 9957579--9957633 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
9957569 ACGAAAATCA
**
9957579 TGCCACAAAGGCAGAGATAAATT
1 TGCCACAAAGGCAGAGATAAACG
9957602 TGCCACAAAGGCAGAGATAAACG
1 TGCCACAAAGGCAGAGATAAACG
*
9957625 TGTCACAAA
1 TGCCACAAA
9957634 CGTAGAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.15
Consensus pattern (23 bp):
TGCCACAAAGGCAGAGATAAACG
Found at i:9974228 original size:2 final size:2
Alignment explanation
Indices: 9974221--9974249 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9974211 CTTATAACTT
9974221 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9974250 TATTTTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9981887 original size:7 final size:7
Alignment explanation
Indices: 9981868--9981920 Score: 54
Period size: 8 Copynumber: 7.0 Consensus size: 7
9981858 CCTAAATTGA
9981868 AAAAAATG
1 AAAAAA-G
9981876 AAAAAGAG
1 AAAAA-AG
9981884 AAAAAAG
1 AAAAAAG
9981891 AACAAAAG
1 AA-AAAAG
9981899 AAAAAGAG
1 AAAAA-AG
9981907 AAAGAAA-
1 AAA-AAAG
9981914 AAAAAAG
1 AAAAAAG
9981921 GTGGGTTTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
6 3 0.08
7 10 0.25
8 24 0.60
9 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:9982739 original size:106 final size:106
Alignment explanation
Indices: 9982553--9983214 Score: 909
Period size: 106 Copynumber: 6.4 Consensus size: 106
9982543 GATTTTAGCT
**
9982553 AGAGTCAATTTCAACTTCACAGTAAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
1 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
* *
9982618 CGAAGGGACAGCTGGTTGTCAACAAATAATTTCCCAATTTC
66 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
*
9982659 AGAGTCAATTTCAACATCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
1 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
* *
9982724 CGAAGGGACGACTGGTTGTCAACAAACAATCTCCCAATTTC
66 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
* * * *
9982765 ATAG-C-----CAA--T---AGCGAAGGATATTGGACTCGAGACGACACAAGCTCAACTTCACAA
1 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
9982819 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
66 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
* * * *
9982860 AGGGTCAATTTTAACTTCACATCGAAGGATATTGGACTCGAGAC--CACAAGTTCAACTTCACAA
1 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
*
9982923 CGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCAATTTC
66 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
* * * *
9982964 AGAGCCAATTTCAACTTCAAAGCGAAGGATATTGGACTCGAGACGACACAAGTTCAACTTCACAA
1 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
*
9983029 CGAAGGGACGGCTGGTTGTCAATAAACAATTTCCCAATTTC
66 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
* * * * *
9983070 AGGGTCAATTTCAACTTCACATCGAAGGATATTAGACTCAAGACAACACAAGCTCAACTTCACAG
1 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
* * * * * * *
9983135 CGAAGGGGCTGTTGGCTGTCAACAAACAATTTTCCAGTTCC
66 CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
* * *
9983176 AGAGCCAATTTCAACTTCACGGCGGAGGATATTGGACTC
1 AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTC
9983215 GGAACAATAC
Statistics
Matches: 494, Mismatches: 49, Indels: 26
0.87 0.09 0.05
Matches are distributed among these distances:
95 83 0.17
96 1 0.00
98 1 0.00
100 3 0.01
101 2 0.00
103 1 0.00
104 97 0.20
105 1 0.00
106 305 0.62
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (106 bp):
AGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAA
CGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTTC
Found at i:9983745 original size:35 final size:35
Alignment explanation
Indices: 9983699--9983770 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
9983689 CCAAAAAAGA
*
9983699 AGAGTTGGATTAGGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAAGACTCAAATACTAGTCTAAAAT
9983734 AGAGTTGGATTAAGACTCAAATACTAGTCTAAAAT
1 AGAGTTGGATTAAGACTCAAATACTAGTCTAAAAT
9983769 AG
1 AG
9983771 GGTTTTTCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (35 bp):
AGAGTTGGATTAAGACTCAAATACTAGTCTAAAAT
Found at i:9984171 original size:17 final size:18
Alignment explanation
Indices: 9984145--9984184 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
9984135 ATTATATGGA
9984145 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
9984161 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
9984179 TATTAT
1 TATTAT
9984185 ACGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:9984442 original size:2 final size:2
Alignment explanation
Indices: 9984437--9984471 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9984427 CTTATAACTT
9984437 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9984472 TTTTTATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9984633 original size:41 final size:39
Alignment explanation
Indices: 9984588--9984664 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 39
9984578 AGGGCCCATT
* *
9984588 TTTTTGTTTTATTTCTAACTAAAGTCTCTCCCACTTTCCTC
1 TTTTTGTCTTATTTCTAACTAAAG-C-CCCCCACTTTCCTC
*
9984629 TTTTTGTCTTATTTCTGACTAAAGCCCCCCACTTTC
1 TTTTTGTCTTATTTCTAACTAAAGCCCCCCACTTTC
9984665 GGTGAAGTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 10 0.30
40 1 0.03
41 22 0.67
ACGTcount: A:0.17, C:0.29, G:0.06, T:0.48
Consensus pattern (39 bp):
TTTTTGTCTTATTTCTAACTAAAGCCCCCCACTTTCCTC
Found at i:9984753 original size:2 final size:2
Alignment explanation
Indices: 9984746--9984774 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9984736 TACTTTGATG
9984746 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9984775 TTTCATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9989287 original size:20 final size:20
Alignment explanation
Indices: 9989264--9989312 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
9989254 GACCCTTCAA
9989264 TATCGATACTACACAATG-T-G
1 TATCGATACT-CAC-ATGTTGG
9989284 TATCGATACTCACATGTTGG
1 TATCGATACTCACATGTTGG
9989304 TATCGATAC
1 TATCGATAC
9989313 CTGCTCACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 3 0.11
19 4 0.15
20 20 0.74
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (20 bp):
TATCGATACTCACATGTTGG
Found at i:9990721 original size:228 final size:228
Alignment explanation
Indices: 9990324--9990779 Score: 876
Period size: 228 Copynumber: 2.0 Consensus size: 228
9990314 AAAGATAAAG
*
9990324 CTTTTGGAGAGGAGGAAGATGACAAGCGGGTGAAGAAAATGAGAGAGTTTTCAGACACGATATCA
1 CTTTTGGAGAGGAGGAAGATGACAAGCGGGTGAAGAAAATGAGAGAGTTTTCAGACACGATATAA
*
9990389 TAAATAATTAAGGGATTTCAACTTTTATTTTGAACAATGGTATAATTACTTTCTTGGTCCTCTTG
66 TAAACAATTAAGGGATTTCAACTTTTATTTTGAACAATGGTATAATTACTTTCTTGGTCCTCTTG
9990454 ATTTTGGTTGCAAACTAAAAACACTATTTTTATACTAATTAGGCCCCAAGTCAAGCCTAATTTTT
131 ATTTTGGTTGCAAACTAAAAACACTATTTTTATACTAATTAGGCCCCAAGTCAAGCCTAATTTTT
9990519 ACTTAAAGTTTGGTCAAGGCTTCCTACAAGCCA
196 ACTTAAAGTTTGGTCAAGGCTTCCTACAAGCCA
*
9990552 CTTTTGGAGATGAGGAAGATGACAAGCGGGTGAAGAAAATGAGAGAGTTTTCAGACACGATATAA
1 CTTTTGGAGAGGAGGAAGATGACAAGCGGGTGAAGAAAATGAGAGAGTTTTCAGACACGATATAA
*
9990617 TAAACAATTAAGGGATTTCAACTTTTATTTTGAATAATGGTATAATTACTTTCTTGGTCCTCTTG
66 TAAACAATTAAGGGATTTCAACTTTTATTTTGAACAATGGTATAATTACTTTCTTGGTCCTCTTG
9990682 ATTTTGGTTGCAAACTAAAAACACTATTTTTATACTAATTAGGCCCCAAGTCAAGCCTAATTTTT
131 ATTTTGGTTGCAAACTAAAAACACTATTTTTATACTAATTAGGCCCCAAGTCAAGCCTAATTTTT
9990747 ACTTAAAGTTTGGTCAAGGCTTCCTACAAGCCA
196 ACTTAAAGTTTGGTCAAGGCTTCCTACAAGCCA
9990780 TGGGTTTTAT
Statistics
Matches: 224, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
228 224 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (228 bp):
CTTTTGGAGAGGAGGAAGATGACAAGCGGGTGAAGAAAATGAGAGAGTTTTCAGACACGATATAA
TAAACAATTAAGGGATTTCAACTTTTATTTTGAACAATGGTATAATTACTTTCTTGGTCCTCTTG
ATTTTGGTTGCAAACTAAAAACACTATTTTTATACTAATTAGGCCCCAAGTCAAGCCTAATTTTT
ACTTAAAGTTTGGTCAAGGCTTCCTACAAGCCA
Found at i:9994929 original size:16 final size:16
Alignment explanation
Indices: 9994908--9994941 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
9994898 TTAGTTACAT
9994908 TTCATAAACAACTTAA
1 TTCATAAACAACTTAA
9994924 TTCATAAACAACTTAA
1 TTCATAAACAACTTAA
9994940 TT
1 TT
9994942 ACCCACCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (16 bp):
TTCATAAACAACTTAA
Found at i:10003086 original size:2 final size:2
Alignment explanation
Indices: 10003081--10003126 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
10003071 GCAATCGAAT
10003081 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10003123 TA TA
1 TA TA
10003127 CTCTTTGATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10007050 original size:22 final size:22
Alignment explanation
Indices: 10007018--10007069 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
10007008 GGAGTATCGG
10007018 TACCATAGTATAGAAGTTTCGA
1 TACCATAGTATAGAAGTTTCGA
*
10007040 TACTATAGTATAGAAGTTTCGA
1 TACCATAGTATAGAAGTTTCGA
10007062 TACCATAG
1 TACCATAG
10007070 GATGGGTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (22 bp):
TACCATAGTATAGAAGTTTCGA
Found at i:10008040 original size:32 final size:32
Alignment explanation
Indices: 10007999--10008062 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
10007989 TCATATTTTG
10007999 ATAATGTGTGATATGTTGATATTTAAGTACAA
1 ATAATGTGTGATATGTTGATATTTAAGTACAA
10008031 ATAATGTGTGATATGTTGATATTTAAGTACAA
1 ATAATGTGTGATATGTTGATATTTAAGTACAA
10008063 TTCATTTTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.03, G:0.19, T:0.41
Consensus pattern (32 bp):
ATAATGTGTGATATGTTGATATTTAAGTACAA
Found at i:10011236 original size:20 final size:20
Alignment explanation
Indices: 10011207--10011245 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10011197 TTTCCAGCAC
*
10011207 ATACAACTATATGCTCCTAA
1 ATACAACTATATGATCCTAA
*
10011227 ATACATCTATATGATCCTA
1 ATACAACTATATGATCCTA
10011246 TATGAGCTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.33
Consensus pattern (20 bp):
ATACAACTATATGATCCTAA
Found at i:10022098 original size:20 final size:20
Alignment explanation
Indices: 10022070--10022116 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
10022060 GTTTTTTGGG
*
10022070 TTATAGTATCAATATTTTTC
1 TTATAGTATCAATATTGTTC
*
10022090 TTGTAGTATCAATATTGTTC
1 TTATAGTATCAATATTGTTC
10022110 TTATAGT
1 TTATAGT
10022117 TACTAGTATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.53
Consensus pattern (20 bp):
TTATAGTATCAATATTGTTC
Found at i:10023282 original size:34 final size:35
Alignment explanation
Indices: 10023216--10023306 Score: 105
Period size: 34 Copynumber: 2.6 Consensus size: 35
10023206 TGTGTCCCGA
*
10023216 GTCACATTGAGATAACT-CACAACAATGTGTCATAT
1 GTCACATTCAGATAA-TGCACAACAATGTGTCATAT
*
10023251 GTCACATTCAGATAATGCACAA-AATGTGTCATGT
1 GTCACATTCAGATAATGCACAACAATGTGTCATAT
** * *
10023285 GTCTTATTTAGATAATGTACAA
1 GTCACATTCAGATAATGCACAA
10023307 TATTGTTTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
34 30 0.61
35 19 0.39
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (35 bp):
GTCACATTCAGATAATGCACAACAATGTGTCATAT
Found at i:10023329 original size:35 final size:34
Alignment explanation
Indices: 10023220--10023331 Score: 91
Period size: 35 Copynumber: 3.2 Consensus size: 34
10023210 TCCCGAGTCA
* * * *
10023220 CATTGAGATAACT-CACAACAATGTGTCATATGTCA
1 CATTTAGATAA-TGCACAA-AATGTGTCATGTATCG
* * *
10023255 CATTCAGATAATGCACAAAATGTGTCATGTGTCT
1 CATTTAGATAATGCACAAAATGTGTCATGTATCG
* * * *
10023289 TATTTAGATAATGTACAATATTGTTTCATGTATCG
1 CATTTAGATAATGCACAA-AATGTGTCATGTATCG
10023324 CATTTAGA
1 CATTTAGA
10023332 GTATACACAA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
34 30 0.47
35 34 0.53
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (34 bp):
CATTTAGATAATGCACAAAATGTGTCATGTATCG
Done.