Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 44 of 56
Found at i:10150593 original size:55 final size:55
Alignment explanation
Indices: 10150456--10150665 Score: 314
Period size: 55 Copynumber: 3.8 Consensus size: 55
10150446 TTAACCCAAC
* *
10150456 AAACATATTATGAATTTCGTGGTTTTACACACTTAGTGCCGATACGGTCGTTCAAA
1 AAACATATTATGAATTTCGTGGTTTTGCACACTTAGTGCCGATACGGTCGTTC-AT
* * * * *
10150512 AAATATATTATGAATTTCATGGTTTTGCATACTTAGTGTCGATACGGTCTTTCAT
1 AAACATATTATGAATTTCGTGGTTTTGCACACTTAGTGCCGATACGGTCGTTCAT
* *
10150567 AAACATATTATGAATTACGTGGTTTTGCACACTTAGTGTCGA-ACGGTCGTTCAT
1 AAACATATTATGAATTTCGTGGTTTTGCACACTTAGTGCCGATACGGTCGTTCAT
10150621 AAACATATTATGAATTTCGTGGGTTTTGCACACTTAGTGCCGATA
1 AAACATATTATGAATTTCGT-GGTTTTGCACACTTAGTGCCGATA
10150666 GTACACATAG
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
54 30 0.22
55 60 0.43
56 48 0.35
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (55 bp):
AAACATATTATGAATTTCGTGGTTTTGCACACTTAGTGCCGATACGGTCGTTCAT
Found at i:10150598 original size:111 final size:110
Alignment explanation
Indices: 10150456--10150665 Score: 323
Period size: 111 Copynumber: 1.9 Consensus size: 110
10150446 TTAACCCAAC
* *
10150456 AAACATATTATGAATTTCGTGGTTTTACACACTTAGTGCCGATACGGTCGTTCAAAAAATATATT
1 AAACATATTATGAATTACGTGGTTTTACACACTTAGTGCCGA-ACGGTCGTTC-AAAAACATATT
* *
10150521 ATGAATTTCAT-GGTTTTGCATACTTAGTGTCGATACGGTCTTTCAT
64 ATGAATTTCATGGGTTTTGCACACTTAGTGCCGATACGGTCTTTCAT
* * *
10150567 AAACATATTATGAATTACGTGGTTTTGCACACTTAGTGTCGAACGGTCGTTCATAAACATATTAT
1 AAACATATTATGAATTACGTGGTTTTACACACTTAGTGCCGAACGGTCGTTCAAAAACATATTAT
*
10150632 GAATTTCGTGGGTTTTGCACACTTAGTGCCGATA
66 GAATTTCATGGGTTTTGCACACTTAGTGCCGATA
10150666 GTACACATAG
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
109 19 0.21
110 32 0.36
111 39 0.43
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (110 bp):
AAACATATTATGAATTACGTGGTTTTACACACTTAGTGCCGAACGGTCGTTCAAAAACATATTAT
GAATTTCATGGGTTTTGCACACTTAGTGCCGATACGGTCTTTCAT
Found at i:10154993 original size:20 final size:20
Alignment explanation
Indices: 10154949--10154993 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
10154939 CATATATTAT
*
10154949 ATATAATTTTTTAAAACATA
1 ATATAATTTTTGAAAACATA
* * *
10154969 TTATAGTTTTTGAAAATATA
1 ATATAATTTTTGAAAACATA
10154989 ATATA
1 ATATA
10154994 TGTTATATAG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (20 bp):
ATATAATTTTTGAAAACATA
Found at i:10166120 original size:38 final size:37
Alignment explanation
Indices: 10166057--10166246 Score: 170
Period size: 37 Copynumber: 5.0 Consensus size: 37
10166047 ATATAGTATG
* *
10166057 GTTTTTGAAAATATTTTTGAAAACATATAAATATATA
1 GTTTTTAAAAACATTTTTGAAAACATATAAATATATA
*
10166094 GTTTTTAAAAACGGTTTTTGAAAACATAT-AATATATA
1 GTTTTTAAAAAC-ATTTTTGAAAACATATAAATATATA
* * * * *
10166131 ATTTTAAAAAAAATCATTTTCGAAAACATATATA-ATATG
1 GTTTT--TAAAAA-CATTTTTGAAAACATATAAATATATA
* * * *
10166170 GTTTTGAAAACACCTTTTTGAAAACGTA-AAATTTATA
1 GTTTTTAAAA-ACATTTTTGAAAACATATAAATATATA
*
10166207 GTTTTTAAAAAATGATTTTTGAAAACATATATAATATATA
1 GTTTTT-AAAAA-CATTTTTGAAAACATATA-AATATATA
10166247 TAATTTTTGA
Statistics
Matches: 120, Mismatches: 22, Indels: 19
0.75 0.14 0.12
Matches are distributed among these distances:
36 2 0.02
37 48 0.40
38 33 0.28
39 28 0.23
40 9 0.08
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (37 bp):
GTTTTTAAAAACATTTTTGAAAACATATAAATATATA
Found at i:10166231 original size:75 final size:75
Alignment explanation
Indices: 10166064--10166244 Score: 222
Period size: 76 Copynumber: 2.4 Consensus size: 75
10166054 ATGGTTTTTG
* * * *
10166064 AAAATATTTTTGAAAACATATAAATATATAGTTTTTAAAAACGGTTTTTGAAAACATATAATATA
1 AAAATATTTTTGAAAACATATATA-ATATAGTTTTGAAAAACGCTTTTTGAAAACATAAAATATA
10166129 TAATTTTAAAA
65 TAATTTTAAAA
* * * *
10166140 AAAATCATTTTCGAAAACATATATAATATGGTTTTGAAAACAC-CTTTTTGAAAACGTAAAATTT
1 AAAAT-ATTTTTGAAAACATATATAATATAGTTTTGAAAA-ACGCTTTTTGAAAACATAAAATAT
* *
10166204 ATAGTTTT-TAA
64 ATAATTTTAAAA
10166215 AAAATGATTTTTGAAAACATATATAATATA
1 AAAAT-ATTTTTGAAAACATATATAATATA
10166245 TATAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
75 29 0.32
76 42 0.47
77 19 0.21
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.39
Consensus pattern (75 bp):
AAAATATTTTTGAAAACATATATAATATAGTTTTGAAAAACGCTTTTTGAAAACATAAAATATAT
AATTTTAAAA
Found at i:10166273 original size:20 final size:19
Alignment explanation
Indices: 10166239--10166288 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
10166229 AAACATATAT
10166239 AATATATATAATTTTTGAAA
1 AATATATATAATTTTT-AAA
*
10166259 ACATAT-TATAGTTTTTAAA
1 A-ATATATATAATTTTTAAA
10166278 AATATAATATA
1 AATAT-ATATA
10166289 TGTTATATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 4 0.15
19 4 0.15
20 14 0.54
21 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (19 bp):
AATATATATAATTTTTAAA
Found at i:10166334 original size:19 final size:19
Alignment explanation
Indices: 10166306--10166383 Score: 65
Period size: 19 Copynumber: 4.2 Consensus size: 19
10166296 TAGCTTTTTC
*
10166306 ATTATATATTATGTATATT
1 ATTATTTATTATGTATATT
*
10166325 ATTATTTATTATTTTATATT
1 ATTATTTATTA-TGTATATT
*
10166345 -TT-TTATATTAGGTTATATT
1 ATTATT-TATTATG-TATATT
*
10166364 ATTA-TTATTATTTA-ATT
1 ATTATTTATTATGTATATT
10166381 ATT
1 ATT
10166384 TATTCATTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
17 6 0.12
18 4 0.08
19 28 0.58
20 10 0.21
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
ATTATTTATTATGTATATT
Found at i:10166343 original size:29 final size:29
Alignment explanation
Indices: 10166306--10166401 Score: 83
Period size: 29 Copynumber: 3.2 Consensus size: 29
10166296 TAGCTTTTTC
10166306 ATTA-TATATTATGTATATTATTATTTATT
1 ATTATTATATTAT-TATATTATTATTTATT
*
10166335 ATT-TTATATTTTTTATATTAGGTTATATTATT
1 ATTATTATA-TTATTATATTA--TTAT-TTATT
10166367 ATTATTAT-TTAATTAT-TTATTCATTTATT
1 ATTATTATATT-ATTATATTATT-ATTTATT
*
10166396 TTTATT
1 ATTATT
10166402 TTTAACTGGT
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
29 26 0.46
30 5 0.09
31 9 0.16
32 12 0.21
33 4 0.07
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (29 bp):
ATTATTATATTATTATATTATTATTTATT
Found at i:10166381 original size:8 final size:9
Alignment explanation
Indices: 10166310--10166386 Score: 68
Period size: 10 Copynumber: 8.3 Consensus size: 9
10166300 TTTTTCATTA
*
10166310 TATATTATG
1 TATATTATT
10166319 TATATTATT
1 TATATTATT
*
10166328 ATTTATTATTT
1 -TATATTA-TT
*
10166339 TATATTTTT
1 TATATTATT
*
10166348 TATATTAGGT
1 TATATTA-TT
10166358 TATATTA-T
1 TATATTATT
10166366 TATTATTATT
1 TA-TATTATT
10166376 TA-ATTATT
1 TATATTATT
10166384 TAT
1 TAT
10166387 TCATTTATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
8 11 0.20
9 21 0.38
10 22 0.39
11 2 0.04
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (9 bp):
TATATTATT
Found at i:10166401 original size:6 final size:7
Alignment explanation
Indices: 10166306--10166405 Score: 68
Period size: 7 Copynumber: 14.1 Consensus size: 7
10166296 TAGCTTTTTC
*
10166306 ATTATAT
1 ATTATTT
*
10166313 ATTATGT
1 ATTATTT
10166320 A-TA-TT
1 ATTATTT
10166325 ATTATTT
1 ATTATTT
10166332 ATTATTT
1 ATTATTT
10166339 -TATATTT
1 AT-TATTT
*
10166346 TTTATATT
1 ATTAT-TT
10166354 AGGTTATATT
1 A--TTAT-TT
10166364 ATTA-TT
1 ATTATTT
10166370 ATTATTT
1 ATTATTT
10166377 AATTATTT
1 -ATTATTT
10166385 ATTCATTT
1 ATT-ATTT
10166393 ATT-TTT
1 ATTATTT
10166399 ATT-TTT
1 ATTATTT
10166405 A
1 A
10166406 ACTGGTCCAA
Statistics
Matches: 80, Mismatches: 3, Indels: 21
0.77 0.03 0.20
Matches are distributed among these distances:
5 2 0.03
6 21 0.26
7 29 0.36
8 20 0.25
10 8 0.10
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (7 bp):
ATTATTT
Found at i:10173292 original size:4 final size:4
Alignment explanation
Indices: 10173283--10175851 Score: 5054
Period size: 4 Copynumber: 645.2 Consensus size: 4
10173273 GTTTTCGTCA
10173283 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173331 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173379 AT-- ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173425 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173473 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173521 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT-- ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173567 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173615 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173663 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173711 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173759 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173807 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173855 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173903 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173951 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10173999 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174047 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174095 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174143 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174191 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174239 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174287 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174335 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174383 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174431 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174479 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174527 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174575 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174623 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT-- ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174669 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174717 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174765 ATAG ATAG ATAG --AG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174811 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174859 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174907 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10174955 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175003 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175051 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175099 ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT-- ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175145 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT-- ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175191 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175239 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175287 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175335 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175383 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175431 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175479 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175527 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175575 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175623 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175671 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175719 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175767 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
10175815 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG A
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG A
10175852 GGTGGCAAAC
Statistics
Matches: 2553, Mismatches: 0, Indels: 24
0.99 0.00 0.01
Matches are distributed among these distances:
2 12 0.00
4 2541 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:10176133 original size:32 final size:32
Alignment explanation
Indices: 10176074--10176166 Score: 102
Period size: 32 Copynumber: 2.9 Consensus size: 32
10176064 TCGATATCAA
* *
10176074 GTCAGGTCAATATCGGATC-GATTGATTTTTGG
1 GTCAGGTCAATACCGGATCAG-TTGATTTTTAG
* *
10176106 GTCAGTTC-ATACCGGATCAGTTAGA-TTTAAG
1 GTCAGGTCAATACCGGATCAGTT-GATTTTTAG
*
10176137 GTCAGGTCAATATCGGATCAGTTGATTTTT
1 GTCAGGTCAATACCGGATCAGTTGATTTTT
10176167 TATTTATGTC
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
31 24 0.48
32 26 0.52
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.37
Consensus pattern (32 bp):
GTCAGGTCAATACCGGATCAGTTGATTTTTAG
Found at i:10176140 original size:31 final size:31
Alignment explanation
Indices: 10176074--10176164 Score: 96
Period size: 31 Copynumber: 2.9 Consensus size: 31
10176064 TCGATATCAA
* **
10176074 GTCAGGTCAATATCGGATC-GATTGATTTTTGG
1 GTCAGGTCAATACCGGATCAG-TTGA-TTTAAG
*
10176106 GTCAGTTC-ATACCGGATCAGTTAGATTTAAG
1 GTCAGGTCAATACCGGATCAGTT-GATTTAAG
*
10176137 GTCAGGTCAATATCGGATCAGTTGATTT
1 GTCAGGTCAATACCGGATCAGTTGATTT
10176165 TTTATTTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
31 27 0.54
32 23 0.46
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.35
Consensus pattern (31 bp):
GTCAGGTCAATACCGGATCAGTTGATTTAAG
Found at i:10179412 original size:24 final size:24
Alignment explanation
Indices: 10179385--10179470 Score: 69
Period size: 27 Copynumber: 3.8 Consensus size: 24
10179375 AATAAATATT
10179385 AAGTAAATTAAAAAGAAAAAGAAA
1 AAGTAAATTAAAAAGAAAAAGAAA
*
10179409 AAGTTAAATTAAAAAAAGAAAAA-TAA
1 AAG-TAAATT--AAAAAGAAAAAGAAA
*
10179435 AAG-AAGTT---AA-AAAAAGAAA
1 AAGTAAATTAAAAAGAAAAAGAAA
*
10179454 AA-TAAAATAAAAAGAAA
1 AAGTAAATTAAAAAGAAA
10179471 TAAAATTAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 19
0.67 0.07 0.26
Matches are distributed among these distances:
18 5 0.10
19 9 0.19
22 2 0.04
23 3 0.06
24 7 0.15
25 6 0.12
26 5 0.10
27 11 0.23
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (24 bp):
AAGTAAATTAAAAAGAAAAAGAAA
Found at i:10179426 original size:15 final size:15
Alignment explanation
Indices: 10179406--10179466 Score: 56
Period size: 14 Copynumber: 4.2 Consensus size: 15
10179396 AAAGAAAAAG
*
10179406 AAAAAGTTAAATTAA
1 AAAAAGTTAAAATAA
*
10179421 AAAAAG-AAAAATAA
1 AAAAAGTTAAAATAA
*
10179435 AAGAAGTTAAAA-AA
1 AAAAAGTTAAAATAA
*
10179449 AGAAAA-ATAAAATAA
1 A-AAAAGTTAAAATAA
10179464 AAA
1 AAA
10179467 GAAATAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
14 21 0.57
15 16 0.43
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (15 bp):
AAAAAGTTAAAATAA
Found at i:10179442 original size:29 final size:29
Alignment explanation
Indices: 10179394--10179484 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 29
10179384 TAAGTAAATT
*
10179394 AAAAAGAAAAA-GAAA-AAGTTAAATTAA
1 AAAAAGAAAAATAAAAGAAGTTAAATTAA
10179421 AAAAAGAAAAATAAAAGAAGTTAAA--AA
1 AAAAAGAAAAATAAAAGAAGTTAAATTAA
* * *
10179448 AAGAAAAATAAAATAAAAAGAAATAAAATTAA
1 AA-AAAGA-AAAAT-AAAAGAAGTTAAATTAA
*
10179480 GAAAA
1 AAAAA
10179485 TATTGAATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
27 15 0.29
28 7 0.13
29 13 0.25
30 11 0.21
31 3 0.06
32 3 0.06
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (29 bp):
AAAAAGAAAAATAAAAGAAGTTAAATTAA
Found at i:10179486 original size:29 final size:30
Alignment explanation
Indices: 10179360--10179484 Score: 80
Period size: 30 Copynumber: 4.1 Consensus size: 30
10179350 GTTAGATTGT
* *
10179360 AAAATAAAAT--AAACAAATAAATATTAAGT
1 AAAATAAAATAAAAAGAAATAAA-ATTAAGA
* * *
10179389 AAATTAAAAAGAAAAAGAAAAAGTTAAATTAA-A
1 AAAAT-AAAATAAAAAG--AAA-TAAAATTAAGA
* * *
10179422 AAAAGAAAA-ATAAAAGAAGTTAAAA-AAAGA
1 AAAATAAAATA-AAAAGAA-ATAAAATTAAGA
10179452 AAAATAAAATAAAAAGAAATAAAATTAAGA
1 AAAATAAAATAAAAAGAAATAAAATTAAGA
10179482 AAA
1 AAA
10179485 TATTGAATTT
Statistics
Matches: 72, Mismatches: 13, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
29 11 0.15
30 33 0.46
31 2 0.03
32 12 0.17
33 3 0.04
34 8 0.11
35 3 0.04
ACGTcount: A:0.74, C:0.01, G:0.08, T:0.17
Consensus pattern (30 bp):
AAAATAAAATAAAAAGAAATAAAATTAAGA
Found at i:10179532 original size:50 final size:51
Alignment explanation
Indices: 10179444--10179593 Score: 130
Period size: 50 Copynumber: 2.9 Consensus size: 51
10179434 AAAGAAGTTA
* *
10179444 AAAAAAGAAAAATAAAATAAAAAGAAATAAAATTAAGAAAATATTGAATTT
1 AAAAAAGAAAAATAAAATAAAAAGAAATAAAATAAAGAAAATATTAAATTT
* * *
10179495 AAAAAAG-AAAA-GAAATAAATAATAAAT-AAATAAAAGAAAATGTTAAATTTT
1 AAAAAAGAAAAATAAAATAAA-AAGAAATAAAAT-AAAGAAAATATTAAA-TTT
* * * *
10179546 GAAAGAAATAACAAATAGAA-AAAATGAAAAAAAATAAA-AAAATATTAA
1 -AAA-AAAGAA-AAATAAAATAAAAAGAAATAAAATAAAGAAAATATTAA
10179594 GAGAGAAAAG
Statistics
Matches: 78, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
49 11 0.14
50 22 0.28
51 10 0.13
52 3 0.04
53 12 0.15
54 8 0.10
55 10 0.13
56 2 0.03
ACGTcount: A:0.71, C:0.01, G:0.08, T:0.20
Consensus pattern (51 bp):
AAAAAAGAAAAATAAAATAAAAAGAAATAAAATAAAGAAAATATTAAATTT
Found at i:10180922 original size:7 final size:7
Alignment explanation
Indices: 10180910--10180946 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
10180900 ATAAAAATAC
10180910 AATATAG
1 AATATAG
10180917 AATATAG
1 AATATAG
10180924 AATATAG
1 AATATAG
10180931 AATATAG
1 AATATAG
*
10180938 AAAATAG
1 AATATAG
10180945 AA
1 AA
10180947 AATAAAATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (7 bp):
AATATAG
Found at i:10180934 original size:21 final size:21
Alignment explanation
Indices: 10180897--10180955 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
10180887 TAAATAAAAT
*
10180897 AAAATA-AAAATACAATATAG
1 AAAATAGAAAATAAAATATAG
* * *
10180917 AATATAGAATATAGAATATAG
1 AAAATAGAAAATAAAATATAG
10180938 AAAATAGAAAATAAAATA
1 AAAATAGAAAATAAAATA
10180956 CTAATAATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 5 0.16
21 27 0.84
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (21 bp):
AAAATAGAAAATAAAATATAG
Found at i:10180947 original size:7 final size:7
Alignment explanation
Indices: 10180897--10180950 Score: 56
Period size: 7 Copynumber: 7.9 Consensus size: 7
10180887 TAAATAAAAT
10180897 AAAATA-
1 AAAATAG
*
10180903 AAAATAC
1 AAAATAG
*
10180910 AATATAG
1 AAAATAG
*
10180917 AATATAG
1 AAAATAG
*
10180924 AATATAG
1 AAAATAG
*
10180931 AATATAG
1 AAAATAG
10180938 AAAATAG
1 AAAATAG
10180945 AAAATA
1 AAAATA
10180951 AAATACTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
6 6 0.14
7 38 0.86
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (7 bp):
AAAATAG
Found at i:10181055 original size:36 final size:36
Alignment explanation
Indices: 10181009--10181328 Score: 310
Period size: 37 Copynumber: 8.6 Consensus size: 36
10180999 CCCATTTTAA
* *
10181009 AAAAATTATATATTATATGTTTCCAAAAATCATTTT
1 AAAAACTATATATTATATGTTTTCAAAAATCATTTT
* *
10181045 AAAAATTATATATTATACGTTTTCAAAAAT-ATTTTT
1 AAAAACTATATATTATATGTTTTCAAAAATCA-TTTT
* *
10181081 AAAAATTATATTATATATATGTTTTC-AAAATTATTTT
1 AAAAACTATA-TAT-TATATGTTTTCAAAAATCATTTT
* **
10181118 TAAAACTATATATTATATGTTTTCAAAAATGTGTTTT
1 AAAAACTATATATTATATGTTTTCAAAAAT-CATTTT
* * * *
10181155 CAAAATTATATATTATATGTTTTCCAAAACCGATTTTT
1 AAAAACTATATATTATATGTTTTCAAAAATC-A-TTTT
10181193 AAAAAACTATATATTATATACGTTTTCAAAAAT-ATGTTTT
1 -AAAAACTATATATTATAT--GTTTTCAAAAATCA--TTTT
*
10181233 CAAAACTATATATTATATGTTTTCAAAAA-CATGGTTT
1 AAAAACTATATATTATATGTTTTCAAAAATCAT--TTT
* **
10181270 TAAAA--ATATATTATATGTTTTCAAAAACTGTTTTCT
1 AAAAACTATATATTATATGTTTTCAAAAA-TCATTT-T
10181306 AAAAACTATATATTATATGTTTT
1 AAAAACTATATATTATATGTTTT
10181329 TTCAAAAACT
Statistics
Matches: 242, Mismatches: 22, Indels: 38
0.80 0.07 0.13
Matches are distributed among these distances:
35 37 0.15
36 55 0.23
37 71 0.29
38 31 0.13
39 34 0.14
40 4 0.02
41 10 0.04
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (36 bp):
AAAAACTATATATTATATGTTTTCAAAAATCATTTT
Found at i:10181128 original size:37 final size:36
Alignment explanation
Indices: 10181009--10181328 Score: 353
Period size: 36 Copynumber: 8.6 Consensus size: 36
10180999 CCCATTTTAA
* *
10181009 AAAAATTATATATTATATGTTTCCAAAAATCA-TTTT
1 AAAAACTATATATTATATGTTTTCAAAAAT-ATTTTT
* *
10181045 AAAAATTATATATTATACGTTTTCAAAAATATTTTT
1 AAAAACTATATATTATATGTTTTCAAAAATATTTTT
* *
10181081 AAAAATTATATTATATATATGTTTTCAAAATTATTTTT
1 AAAAACTATA-TAT-TATATGTTTTCAAAAATATTTTT
*
10181119 -AAAACTATATATTATATGTTTTCAAAAATGTGTTTT
1 AAAAACTATATATTATATGTTTTCAAAAATAT-TTTT
* * **
10181155 CAAAATTATATATTATATGTTTTCCAAAACCGATTTTT
1 AAAAACTATATATTATATGTTTT-CAAAA-ATATTTTT
10181193 AAAAAACTATATATTATATACGTTTTCAAAAATATGTTTT
1 -AAAAACTATATATTATAT--GTTTTCAAAAATAT-TTTT
* *
10181233 CAAAACTATATATTATATGTTTTCAAAAACATGGTTTT
1 AAAAACTATATATTATATGTTTTCAAAAATAT--TTTT
*
10181271 -AAAA--ATATATTATATGTTTTCAAAAACTGTTTTCT
1 AAAAACTATATATTATATGTTTTCAAAAA-TATTTT-T
10181306 AAAAACTATATATTATATGTTTT
1 AAAAACTATATATTATATGTTTT
10181329 TTCAAAAACT
Statistics
Matches: 248, Mismatches: 19, Indels: 32
0.83 0.06 0.11
Matches are distributed among these distances:
34 3 0.01
35 41 0.17
36 54 0.22
37 49 0.20
38 51 0.21
39 36 0.15
40 9 0.04
41 5 0.02
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (36 bp):
AAAAACTATATATTATATGTTTTCAAAAATATTTTT
Found at i:10185222 original size:12 final size:12
Alignment explanation
Indices: 10185179--10185219 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
10185169 ATTACATTTA
10185179 TATTTTAATTAT
1 TATTTTAATTAT
**
10185191 TGCTTTAATTAT
1 TATTTTAATTAT
10185203 TATTTT-ATTAT
1 TATTTTAATTAT
10185214 TATTTT
1 TATTTT
10185220 TATCTTATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
11 11 0.44
12 14 0.56
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (12 bp):
TATTTTAATTAT
Found at i:10185501 original size:18 final size:19
Alignment explanation
Indices: 10185468--10185516 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
10185458 CATTTTCTGA
10185468 TATTTTAA-ATAA-TATAT-
1 TATTTTAATA-AATTATATC
10185485 TACTTTT-ATAAATTATATC
1 TA-TTTTAATAAATTATATC
10185504 TATTTTAATAAAT
1 TATTTTAATAAAT
10185517 GCTTTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 5 0.19
18 14 0.52
19 8 0.30
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTTTAATAAATTATATC
Found at i:10186126 original size:23 final size:21
Alignment explanation
Indices: 10186085--10186124 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10186075 TTAGAAATTT
10186085 AAAATTCATATATTTTATTAA
1 AAAATTCATATATTTTATTAA
*
10186106 AAAATTTATATA-TTTATTA
1 AAAATTCATATATTTTATTA
10186125 TTTTCATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (21 bp):
AAAATTCATATATTTTATTAA
Found at i:10186154 original size:20 final size:21
Alignment explanation
Indices: 10186120--10186169 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
10186110 TTTATATATT
10186120 TATTATTTTCATAATATTT-A
1 TATTATTTTCATAATATTTCA
*
10186140 TATTATTTT-ATTAATGTTTCA
1 TATTATTTTCA-TAATATTTCA
*
10186161 TTTTATTTT
1 TATTATTTT
10186170 TCATGTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 1 0.04
20 16 0.62
21 9 0.35
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (21 bp):
TATTATTTTCATAATATTTCA
Found at i:10188426 original size:15 final size:14
Alignment explanation
Indices: 10188385--10188425 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
10188375 ATTTTAAATA
10188385 ATTTACATTTTTGC
1 ATTTACATTTTTGC
10188399 ATTTATGCA-TTTTGC
1 ATTTA--CATTTTTGC
10188414 ATTTACATTTTT
1 ATTTACATTTTT
10188426 TATTTGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 2 0.08
14 9 0.38
15 11 0.46
16 2 0.08
ACGTcount: A:0.22, C:0.12, G:0.07, T:0.59
Consensus pattern (14 bp):
ATTTACATTTTTGC
Found at i:10196023 original size:20 final size:22
Alignment explanation
Indices: 10195977--10196034 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
10195967 TACATCTACA
10195977 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
10195999 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
* *
10196021 CTTTTCGAAGATGA
1 CTCTTCAAAGATGA
10196035 AAGCTTTATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (22 bp):
CTCTTCAAAGATGATAGATTCT
Found at i:10196920 original size:73 final size:72
Alignment explanation
Indices: 10196701--10196949 Score: 354
Period size: 73 Copynumber: 3.4 Consensus size: 72
10196691 CTATTTCCAA
* * * * *
10196701 CATCCGTAAGCCCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGACCTACAGTGCATGATG-TTTCAAAAAGCCTTCGGGAGCTTTTTGA--TCTT--A
*
10196766 AACCCTCAGGGT
61 AAGCCTCAGGGT
10196778 CATCTGTAAGACCTACAGTGCATGATGTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGCC
1 CATCTGTAAGACCTACAGTGCATGATGTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGCC
10196843 TCAGGGT
66 TCAGGGT
* *
10196850 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCAGAAGCTTTTTGATCTTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTT-TCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGC
10196915 CTCAGGGT
65 CTCAGGGT
* *
10196923 CATCTGTAAGCCCTACAGTGCAAGATG
1 CATCTGTAAGACCTACAGTGCATGATG
10196950 ATAAGACCTC
Statistics
Matches: 161, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
72 41 0.25
73 66 0.41
74 3 0.02
76 28 0.17
77 23 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
CATCTGTAAGACCTACAGTGCATGATGTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGCC
TCAGGGT
Found at i:10197208 original size:112 final size:114
Alignment explanation
Indices: 10197005--10197436 Score: 395
Period size: 123 Copynumber: 3.6 Consensus size: 114
10196995 CAATATTTCT
* *
10197005 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTT
1 AGAA-AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTT
* * * *
10197070 GTTCAACCTTTTGCTTAAATTCATCAC-CCGATGGAT-CAGCGTTGCCAG
65 GTTCAACCTTTTGCATAAATTCATCACACAGATAGATACAACGTTGCCAG
* *
10197118 AGAAAGTTCATAATGAGAAGAATTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAGCTTG
1 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
* * * *
10197183 TTCAACCTTTTGCATGAA-TCTATCACAGAAGGAGATAGATCAACACCAACTTTTCCAG
66 TTCAACCTTTTGCATAAATTC-ATCAC---A-CAGATAGAT----A-CAACGTTGCCAG
*
10197241 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAGGAAGTTCATAATGAGAAGAACTTG
1 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
* * * * * * * * *
10197306 TTCAACCTTTTGCTTGACTCCATTTCCAAAAAGAGATAGAGAAGCAGAGCTATTTCCAG
66 TTCAACCTTTTGCATAAATTCA--T-C--ACACAGATAGA-TA-CA-A-C-GTTGCCAG
* * ** *
10197365 -GTGAAGTTCATAATGAGAAGAACTCATCTGAAGATTAAGAAAAAGTTCATAATGAGAAGAACTT
1 AG-AAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTT
10197429 GTTCAACC
65 GTTCAACC
10197437 ATGCATTGAT
Statistics
Matches: 268, Mismatches: 28, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
111 2 0.01
112 78 0.29
113 4 0.01
117 6 0.02
121 3 0.01
122 1 0.00
123 90 0.34
124 80 0.30
125 2 0.01
126 1 0.00
128 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (114 bp):
AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
TTCAACCTTTTGCATAAATTCATCACACAGATAGATACAACGTTGCCAG
Found at i:10197411 original size:124 final size:123
Alignment explanation
Indices: 10197114--10197436 Score: 429
Period size: 123 Copynumber: 2.6 Consensus size: 123
10197104 ATCAGCGTTG
* *
10197114 CCAGAGAAAGTTCATAATGAGAAGAATTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAG
1 CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAA
* *
10197179 CTTGTTCAACCTTTTGCATGAATCTATCACAGAAGGAGATAGATCAACACCAACTTTT
66 CTTGTTCAACCTTTTGCATGAATCTATCACAAAAAGAGATAGATCAACACCAACTTTT
*
10197237 CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAGGAAGTTCATAATGAGAAGAA
1 CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAA
* * * * * *
10197302 CTTGTTCAACCTTTTGCTTGACTCCATTTC-CAAAAAGAGATAGA-GAAGCA-GAGCTATTT
66 CTTGTTCAACCTTTTGCATGAAT-C-TATCACAAAAAGAGATAGATCAA-CACCAACT-TTT
* * ** *
10197361 CCAG-GTGAAGTTCATAATGAGAAGAACTCATCTGAAGATTAAGAAAAAGTTCATAATGAGAAGA
1 CCAGAG-AAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGA
10197425 ACTTGTTCAACC
65 ACTTGTTCAACC
10197437 ATGCATTGAT
Statistics
Matches: 178, Mismatches: 17, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
123 89 0.50
124 86 0.48
125 3 0.02
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (123 bp):
CCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAA
CTTGTTCAACCTTTTGCATGAATCTATCACAAAAAGAGATAGATCAACACCAACTTTT
Found at i:10197684 original size:138 final size:139
Alignment explanation
Indices: 10197357--10197712 Score: 423
Period size: 139 Copynumber: 2.6 Consensus size: 139
10197347 AAGCAGAGCT
** *
10197357 ATTTCCAG-GTGAAGTTCATAATGAGAAGAACTCATCTGAAGATTAAGAAAAAGTTCATAATGAG
1 ATTTCCAGAG-GAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAG
* * * * * *
10197421 AAGAACTTGTTCAACCATGCATTGATTCATCTCCTATGGAATTGAATGAAAGAAGAACCTCATTT
65 AAGAATTTGTTCAACCATACATTAATTCATCACATATGGAATTGAATCAAAGAAGAACCTCATTT
* *
10197486 GAGGATCAAT
130 GAAGATCAAC
** * * *
10197496 ATTTTTAGAGGAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAGGTTCATAATAAGA
1 ATTTCCAGAGGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGA
* * * ** *
10197561 AGAATTTGTTCAACCTTACCTTAATTCATCACATATGGAGTTGAATCAACA-AA-TCCCTCTTTT
66 AGAATTTGTTCAACCATACATTAATTCATCACATATGGAATTGAATCAA-AGAAGAACCTCATTT
*
10197624 GAAGATCAGC
130 GAAGATCAAC
* * *
10197634 ATTTCCAGAAGG-AGTTCATAATAAGAAGAACTCATCTGAAAAAGAAGAAGAAGTTCAAAATGAG
1 ATTTCCAG-AGGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAG
10197698 AAGAATTTGTTCAAC
65 AAGAATTTGTTCAAC
10197713 TTTTTTGCTA
Statistics
Matches: 184, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
138 81 0.44
139 101 0.55
140 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (139 bp):
ATTTCCAGAGGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGA
AGAATTTGTTCAACCATACATTAATTCATCACATATGGAATTGAATCAAAGAAGAACCTCATTTG
AAGATCAAC
Found at i:10198006 original size:39 final size:39
Alignment explanation
Indices: 10197962--10198038 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
10197952 CCCTCCATCC
*
10197962 AGCAGCCCCTCCACACATCATTTCCAGCAGCTTCCAGCG
1 AGCAGCCCCTCCACACATCAGTTCCAGCAGCTTCCAGCG
* *
10198001 AGCAGCCCCTCCACGCATCAGTTGCAGCAGCTTCCAGC
1 AGCAGCCCCTCCACACATCAGTTCCAGCAGCTTCCAGC
10198039 ACTGCTAGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.22, C:0.43, G:0.18, T:0.17
Consensus pattern (39 bp):
AGCAGCCCCTCCACACATCAGTTCCAGCAGCTTCCAGCG
Found at i:10199552 original size:11 final size:12
Alignment explanation
Indices: 10199541--10199581 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
10199531 ATTACTTTTA
10199541 TATTTTAATTAT
1 TATTTTAATTAT
10199553 TGA-TTTAATTAT
1 T-ATTTTAATTAT
10199565 TATTTT-ATTAT
1 TATTTTAATTAT
10199576 TATTTT
1 TATTTT
10199582 TATCTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 12 0.44
12 14 0.52
13 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (12 bp):
TATTTTAATTAT
Found at i:10199564 original size:23 final size:22
Alignment explanation
Indices: 10199504--10199580 Score: 70
Period size: 23 Copynumber: 3.5 Consensus size: 22
10199494 TATTTTAATC
*
10199504 ATTATTTATTTACAATATTATTTT
1 ATTA-TTATTTA-ATTATTATTTT
* *
10199528 ATCATTACTT--TTA-TATTTT
1 ATTATTATTTAATTATTATTTT
10199547 AATTATTGATTTAATTATTATTTT
1 -ATTATT-ATTTAATTATTATTTT
10199571 ATTATTATTT
1 ATTATTATTT
10199581 TTATCTTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
19 6 0.14
20 7 0.16
21 3 0.07
22 4 0.09
23 14 0.33
24 9 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (22 bp):
ATTATTATTTAATTATTATTTT
Found at i:10199590 original size:14 final size:11
Alignment explanation
Indices: 10199519--10199581 Score: 60
Period size: 11 Copynumber: 5.8 Consensus size: 11
10199509 TTATTTACAA
10199519 TATTATTTTAT
1 TATTATTTTAT
*
10199530 CATTACTTTTA-
1 TATTA-TTTTAT
*
10199541 TA-T-TTTAAT
1 TATTATTTTAT
*
10199550 TATTGATTTAAT
1 TATT-ATTTTAT
10199562 TATTATTTTAT
1 TATTATTTTAT
10199573 TATTATTTT
1 TATTATTTT
10199582 TATCTTATTC
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 4 0.09
9 2 0.05
10 2 0.05
11 20 0.47
12 15 0.35
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.67
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:10199864 original size:18 final size:19
Alignment explanation
Indices: 10199831--10199879 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
10199821 CATTTTCTGA
10199831 TATTTTAA-ATAA-TATAT-
1 TATTTTAATA-AATTATATC
10199848 TACTTTT-ATAAATTATATC
1 TA-TTTTAATAAATTATATC
10199867 TATTTTAATAAAT
1 TATTTTAATAAAT
10199880 GCTTTAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 5 0.19
18 14 0.52
19 8 0.30
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (19 bp):
TATTTTAATAAATTATATC
Found at i:10206728 original size:199 final size:199
Alignment explanation
Indices: 10206388--10206748 Score: 555
Period size: 199 Copynumber: 1.8 Consensus size: 199
10206378 TATTAACGTG
* * * * *
10206388 TACATTGTTAATTTACCTATTACTTTAAAGTAATATGTTTTGAAATTATAAGTATCGGTACTCTA
1 TACATTGTTAATTAACATATTACTTTAAAGTAATAGGTTTCGAAATTATAAGTATCGATACTCTA
* *
10206453 TATATGTGTATCGATACATTTTGTGTGCAAATTGTTTGAGAAACATACTAGAATAAAAGTATCCA
66 TATATGTGTATCGATACATTTTGAGTGCAAATTGTTTGAGAAACATACTAGAATAAAAATATCCA
*
10206518 TACCTATATAAAAGTATTGATACTTGGTATTTGCGCCTATTATCAATATATCGGTAGACTTTTAT
131 TACCTATATAAAAGTATCGATACTTGGTATTTGCGCCTATTATCAATATATCGGTAGACTTTTAT
10206583 CGTT
196 CGTT
* * *
10206587 TACATTGTTAATTAACATATTACTTTAAAGTGATAGGTTTCGAAATT-TCAAGTATTGATACTTT
1 TACATTGTTAATTAACATATTACTTTAAAGTAATAGGTTTCGAAATTAT-AAGTATCGATACTCT
* ** *
10206651 ATATATGTGTATCGATATATTTTGAGTGCAAATTGTTTGAGAAGTATACT-GAAATAAAAATATT
65 ATATATGTGTATCGATACATTTTGAGTGCAAATTGTTTGAGAAACATACTAG-AATAAAAATATC
10206715 CATACCTATATAAAAGTATCGATACTTGGTATTT
129 CATACCTATATAAAAGTATCGATACTTGGTATTT
10206749 ACGCAAGCAA
Statistics
Matches: 145, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
198 2 0.01
199 143 0.99
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (199 bp):
TACATTGTTAATTAACATATTACTTTAAAGTAATAGGTTTCGAAATTATAAGTATCGATACTCTA
TATATGTGTATCGATACATTTTGAGTGCAAATTGTTTGAGAAACATACTAGAATAAAAATATCCA
TACCTATATAAAAGTATCGATACTTGGTATTTGCGCCTATTATCAATATATCGGTAGACTTTTAT
CGTT
Found at i:10207736 original size:12 final size:12
Alignment explanation
Indices: 10207719--10207804 Score: 100
Period size: 12 Copynumber: 7.2 Consensus size: 12
10207709 CCCTACTACC
10207719 TTCTCTTCTTCA
1 TTCTCTTCTTCA
* *
10207731 TTCTCTTCTACC
1 TTCTCTTCTTCA
*
10207743 TTCTCTTATTCA
1 TTCTCTTCTTCA
* *
10207755 TTCTCTTCTACC
1 TTCTCTTCTTCA
*
10207767 TTCTCTTCTTCC
1 TTCTCTTCTTCA
10207779 TTCTCTTCTTCA
1 TTCTCTTCTTCA
* *
10207791 TCCTCTTCCTCA
1 TTCTCTTCTTCA
10207803 TT
1 TT
10207805 GCCAATAACC
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 61 1.00
ACGTcount: A:0.08, C:0.37, G:0.00, T:0.55
Consensus pattern (12 bp):
TTCTCTTCTTCA
Found at i:10207771 original size:36 final size:36
Alignment explanation
Indices: 10207719--10207798 Score: 115
Period size: 36 Copynumber: 2.2 Consensus size: 36
10207709 CCCTACTACC
*
10207719 TTCTCTTCTTCATTCTCTTCTACCTTCTCTTATTCA
1 TTCTCTTCTACATTCTCTTCTACCTTCTCTTATTCA
* * *
10207755 TTCTCTTCTACCTTCTCTTCTTCCTTCTCTTCTTCA
1 TTCTCTTCTACATTCTCTTCTACCTTCTCTTATTCA
*
10207791 TCCTCTTC
1 TTCTCTTC
10207799 CTCATTGCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.07, C:0.38, G:0.00, T:0.55
Consensus pattern (36 bp):
TTCTCTTCTACATTCTCTTCTACCTTCTCTTATTCA
Found at i:10207798 original size:24 final size:24
Alignment explanation
Indices: 10207714--10207787 Score: 130
Period size: 24 Copynumber: 3.1 Consensus size: 24
10207704 AATCCCCCTA
10207714 CTACCTTCTCTTCTTCATTCTCTT
1 CTACCTTCTCTTCTTCATTCTCTT
*
10207738 CTACCTTCTCTTATTCATTCTCTT
1 CTACCTTCTCTTCTTCATTCTCTT
*
10207762 CTACCTTCTCTTCTTCCTTCTCTT
1 CTACCTTCTCTTCTTCATTCTCTT
10207786 CT
1 CT
10207788 TCATCCTCTT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.08, C:0.38, G:0.00, T:0.54
Consensus pattern (24 bp):
CTACCTTCTCTTCTTCATTCTCTT
Found at i:10210198 original size:20 final size:20
Alignment explanation
Indices: 10210173--10210212 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10210163 AGCTCTTTAT
10210173 CGGTTTTATCAAATTGAAAC
1 CGGTTTTATCAAATTGAAAC
* *
10210193 CGGTTTTGTCAAATTTAAAC
1 CGGTTTTATCAAATTGAAAC
10210213 TTGTTATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (20 bp):
CGGTTTTATCAAATTGAAAC
Found at i:10210442 original size:197 final size:197
Alignment explanation
Indices: 10209891--10211001 Score: 1465
Period size: 197 Copynumber: 5.7 Consensus size: 197
10209881 CTTTTTTTAT
* * * * *
10209891 TTCTTTTAAATTCCTAAAGTA-CTGATACTGTGGTACATATAATTAAAAATGTATCAATAC---T
1 TTCTTTTAAATTCCTAAAGTATC-GATACTTTGGTACATATACTTATAAACGTATCGATACAAAT
* * * * *
10209952 TTCAACAATTTCGGTAGCGCTTTACAGATTTTGTCAAATTGAAATCGGTTTTGTCAAATTTCAAC
65 TTCAACAATTCCGGTAGCTCTTTACTGATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAAAC
* * *
10210017 ATGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCGAA-ACTTTATAGGCGTTATTATT
130 CTGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATC-AATACTTTATAGCCGCTATTATT
10210081 GCAA
194 GCAA
* *
10210085 TTCTTTTAAACTCCTAAAGTATCGATACTTTGGTACATATAC-TATAAATGTATCGATACAAATT
1 TTCTTTTAAATTCCTAAAGTATCGATACTTTGGTACATATACTTATAAACGTATCGATACAAATT
* * * * *
10210149 TCAACCATTCCGGTAGCTCTTTA-TCGGTTTTATCAAATTGAAACCGGTTTTGTCAAATTTAAAC
66 TCAACAATTCCGGTAGCTCTTTACT-GATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAAAC
* ** * *
10210213 TTGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGGAGTTATAATTG
130 CTGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCCGCTATTATTG
*
10210278 CTA
195 CAA
*
10210281 TTCTTTTAAATTCCTAAAGTATCAATACTTTGGTACATATACTTATAGAA-GTATCGATACAAAT
1 TTCTTTTAAATTCCTAAAGTATCGATACTTTGGTACATATACTTATA-AACGTATCGATACAAAT
* * *
10210345 TTCAACCATTCCGGTAGCTCTTTACTGGTTTTGTCAAATTGAAATCGATTTTTTCAAATTTAAAC
65 TTCAACAATTCCGGTAGCTCTTTACTGATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAAAC
* * * * *
10210410 CTGTTATATTATCATGTATCGATACATGTGTCTAAGATATCGATACTTTATAGCTGCTGTTATTG
130 CTGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCCGCTATTATTG
10210475 CAA
195 CAA
* * * * **
10210478 TTCTCTTAAATTCCTAAAGTATTGATACTTTGGCACATATACTTATAAAAGTATTAATACAAATT
1 TTCTTTTAAATTCCTAAAGTATCGATACTTTGGTACATATACTTATAAACGTATCGATACAAATT
* *
10210543 TCAACCAA-TCCAGTAGCTCTTTA-TCGATTTTGTCAAATTGAAATTGATTTTGTCAAATTTAAA
66 TCAA-CAATTCCGGTAGCTCTTTACT-GATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAAA
* *
10210606 CCCGTTACATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCCGCTATTATT
129 CCTGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCCGCTATTATT
10210671 GCAA
194 GCAA
* * * **
10210675 TTCTTTTAAATTTCTAAAGTACCGATACTTTGGTGCATATACTTATAAACACATCGATACAAATT
1 TTCTTTTAAATTCCTAAAGTATCGATACTTTGGTACATATACTTATAAACGTATCGATACAAATT
* * * * *
10210740 TCAACAATTCCGGTAGCTCTTTACCGGTTTTGTCAAATTGAAA-CTGGTTTTGTTAAATTTCAAC
66 TCAACAATTCCGGTAGCTCTTTACTGATTTTGTCAAATTGAAATC-GATTTTGTCAAATTTAAAC
* **
10210804 CTGTTATATTGTCATGTATCGATACATGTGTGTAAGGTATTGATACTTTATAGCCGCTATTATTG
130 CTGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCCGCTATTATTG
10210869 CAA
195 CAA
* * * *
10210872 TTCTTTTAAATTCCTATAGTACCAATACTTTGGTATATATACTTATAAACGTATCGATACAAATT
1 TTCTTTTAAATTCCTAAAGTATCGATACTTTGGTACATATACTTATAAACGTATCGATACAAATT
* * *
10210937 TCAACAATTCTGGTAGCTCTTTACCGATTTTGTCAAATTGAAA-C-ATGTTTTGTCAAATTTCAA
66 TCAACAATTCCGGTAGCTCTTTACTGATTTTGTCAAATTGAAATCGA--TTTTGTCAAATTTAAA
10211000 CC
129 CC
10211002 GGTTTTTGTC
Statistics
Matches: 815, Mismatches: 85, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
193 15 0.02
194 37 0.05
195 3 0.00
196 164 0.20
197 591 0.73
198 5 0.01
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (197 bp):
TTCTTTTAAATTCCTAAAGTATCGATACTTTGGTACATATACTTATAAACGTATCGATACAAATT
TCAACAATTCCGGTAGCTCTTTACTGATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAAACC
TGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCCGCTATTATTGC
AA
Found at i:10210958 original size:591 final size:587
Alignment explanation
Indices: 10209891--10211001 Score: 1651
Period size: 591 Copynumber: 1.9 Consensus size: 587
10209881 CTTTTTTTAT
* *
10209891 TTCTTTTAAATTCCTAAAGTACTGATACTGTGGTACATATAATTAAAAATGTATCAATACTTTCA
1 TTCTCTTAAATTCCTAAAGTACTGATACTGTGGCACATATAATTAAAAATGTATCAATACTTTCA
* * * * *
10209956 ACAATTTCGGTAGCGCTTTACAGATTTTGTCAAATTGAAATCGGTTTTGTCAAATTTCAACATGT
66 ACAATTCCAGTAGCGCTTTACAGATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAAACACGT
* * *
10210021 TATATTGTCATGTATCGATACATGTGTCTAAGGTATCGAAACTTTATAGGCGTTATTATTGCAAT
131 TACATTGTCATGTATCGATACATGTGTCTAAGGTATCGAAACTTTATAGCCGCTATTATTGCAAT
* ***
10210086 TCTTTTAAACTCCTAAAGTATCGATACTTTGGTACATATACTATAAATGTATCGATACAAATTTC
196 TCTTTTAAACTCCTAAAGTACCGATACTTTGGTACATATACTATAAACACATCGATACAAATTTC
* * *
10210151 AACCATTCCGGTAGCTCTTTATCGGTTTTATCAAATTGAAACCGGTTTTGTCAAATTTAAACTTG
261 AACAATTCCGGTAGCTCTTTACCGGTTTTATCAAATTGAAACCGGTTTTGTCAAATTTAAACCTG
* * *
10210216 TTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGGAGTTATAATTGCTA
326 TTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCAGCTATAATTGCAA
*
10210281 TTCTTTTAAATTCCTAAAGTATCAATACTTTGGTACATATACTTATAGAAGTATCGATACAAATT
391 TTCTTTTAAATTCCTAAAGTACCAATACTTTGGTACATATACTTATAGAAGTATCGATACAAATT
* * *
10210346 TCAACCATTCCGGTAGCTCTTTACTGGTTTTGTCAAATTGAAATCGAT-TTTT-TCAAATTTAAA
456 TCAACAATTCCGGTAGCTCTTTACCGATTTTGTCAAATTGAAA-C-ATGTTTTGTCAAATTTAAA
10210409 CCTGTTATATTATCATGTATCGATACATGTGTCTAAGATATCGATACTTTATAGCTGCTGTTATT
519 CCTGTTATATTATCATGTATCGATACATGTGTCTAAGATATCGATACTTTATAGCTGCTGTTATT
10210474 GCAA
584 GCAA
* * * *
10210478 TTCTCTTAAATTCCTAAAGTATTGATACTTTGGCACATATACTTATAAAA-GTATTAATACAAAT
1 TTCTCTTAAATTCCTAAAGTACTGATACTGTGGCACATATAATTA-AAAATGTATCAATAC---T
* *
10210542 TTCAACCAA-TCCAGTAGCTCTTTATC-GATTTTGTCAAATTGAAATTGATTTTGTCAAATTTAA
62 TTCAA-CAATTCCAGTAGCGCTTTA-CAGATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAA
*
10210605 ACCCGTTACATTGTCATGTATCGATACATGTGTCTAAGGTATC-AATACTTTATAGCCGCTATTA
125 ACACGTTACATTGTCATGTATCGATACATGTGTCTAAGGTATCGAA-ACTTTATAGCCGCTATTA
* * *
10210669 TTGCAATTCTTTTAAATTTCTAAAGTACCGATACTTTGGTGCATATACTTATAAACACATCGATA
189 TTGCAATTCTTTTAAACTCCTAAAGTACCGATACTTTGGTACATATAC-TATAAACACATCGATA
* * *
10210734 CAAATTTCAACAATTCCGGTAGCTCTTTACCGGTTTTGTCAAATTGAAACTGGTTTTGTTAAATT
253 CAAATTTCAACAATTCCGGTAGCTCTTTACCGGTTTTATCAAATTGAAACCGGTTTTGTCAAATT
* * ** *
10210799 TCAACCTGTTATATTGTCATGTATCGATACATGTGTGTAAGGTATTGATACTTTATAGCCGCTAT
318 TAAACCTGTTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCAGCTAT
* * *
10210864 TATTGCAATTCTTTTAAATTCCTATAGTACCAATACTTTGGTATATATACTTATA-AACGTATCG
383 AATTGCAATTCTTTTAAATTCCTAAAGTACCAATACTTTGGTACATATACTTATAGAA-GTATCG
*
10210928 ATACAAATTTCAACAATTCTGGTAGCTCTTTACCGATTTTGTCAAATTGAAACATGTTTTGTCAA
447 ATACAAATTTCAACAATTCCGGTAGCTCTTTACCGATTTTGTCAAATTGAAACATGTTTTGTCAA
*
10210993 ATTTCAACC
512 ATTTAAACC
10211002 GGTTTTTGTC
Statistics
Matches: 466, Mismatches: 47, Indels: 18
0.88 0.09 0.03
Matches are distributed among these distances:
587 49 0.11
588 4 0.01
589 4 0.01
590 159 0.34
591 250 0.54
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (587 bp):
TTCTCTTAAATTCCTAAAGTACTGATACTGTGGCACATATAATTAAAAATGTATCAATACTTTCA
ACAATTCCAGTAGCGCTTTACAGATTTTGTCAAATTGAAATCGATTTTGTCAAATTTAAACACGT
TACATTGTCATGTATCGATACATGTGTCTAAGGTATCGAAACTTTATAGCCGCTATTATTGCAAT
TCTTTTAAACTCCTAAAGTACCGATACTTTGGTACATATACTATAAACACATCGATACAAATTTC
AACAATTCCGGTAGCTCTTTACCGGTTTTATCAAATTGAAACCGGTTTTGTCAAATTTAAACCTG
TTATATTGTCATGTATCGATACATGTGTCTAAGGTATCAATACTTTATAGCAGCTATAATTGCAA
TTCTTTTAAATTCCTAAAGTACCAATACTTTGGTACATATACTTATAGAAGTATCGATACAAATT
TCAACAATTCCGGTAGCTCTTTACCGATTTTGTCAAATTGAAACATGTTTTGTCAAATTTAAACC
TGTTATATTATCATGTATCGATACATGTGTCTAAGATATCGATACTTTATAGCTGCTGTTATTGC
AA
Found at i:10211006 original size:20 final size:20
Alignment explanation
Indices: 10210959--10211036 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
10210949 GTAGCTCTTT
* **
10210959 ACCGATTTTGTCAAATTGAA
1 ACCGGTTTTGTCAAATTTCA
**
10210979 ACATGTTTTGTCAAATTTCA
1 ACCGGTTTTGTCAAATTTCA
10210999 ACCGGTTTTTGTC-AATTTCCA
1 ACCGG-TTTTGTCAAATTT-CA
*
10211020 ATCGGTTTTGTCAAATT
1 ACCGGTTTTGTCAAATT
10211037 CGTTACCTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
20 30 0.64
21 17 0.36
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (20 bp):
ACCGGTTTTGTCAAATTTCA
Found at i:10211010 original size:21 final size:21
Alignment explanation
Indices: 10210983--10211036 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
10210973 ATTGAAACAT
10210983 GTTTTGTCAAATTT-CAACCG
1 GTTTTGTCAAATTTCCAACCG
*
10211003 GTTTTTGTC-AATTTCCAATCG
1 G-TTTTGTCAAATTTCCAACCG
10211024 GTTTTGTCAAATT
1 GTTTTGTCAAATT
10211037 CGTTACCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.46
Consensus pattern (21 bp):
GTTTTGTCAAATTTCCAACCG
Found at i:10211083 original size:20 final size:21
Alignment explanation
Indices: 10210962--10211077 Score: 66
Period size: 20 Copynumber: 5.7 Consensus size: 21
10210952 GCTCTTTACC
10210962 GATTTTGTCAAATTGAAACAT-
1 GATTTTGTCAAATTGAAAC-TG
** *
10210983 G-TTTTGTCAAATTTCAACCG
1 GATTTTGTCAAATTGAAACTG
* * **
10211003 GTTTTTGTCAATTTCCAA-TCG
1 GATTTTGTCAAATTGAAACT-G
* *
10211024 G-TTTTGTCAAATTCGTTACCT-
1 GATTTTGTCAAATT-G-AAACTG
10211045 -ATTTTGTCAAATTGAAACTG
1 GATTTTGTCAAATTGAAACTG
10211065 GATTTT-TCAAATT
1 GATTTTGTCAAATT
10211078 TCAACTTGTT
Statistics
Matches: 74, Mismatches: 12, Indels: 19
0.70 0.11 0.18
Matches are distributed among these distances:
19 3 0.04
20 35 0.47
21 34 0.46
22 1 0.01
23 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (21 bp):
GATTTTGTCAAATTGAAACTG
Found at i:10213407 original size:2 final size:2
Alignment explanation
Indices: 10213400--10213428 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10213390 CATTATGAAG
10213400 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10213429 CTTGGATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10214042 original size:20 final size:20
Alignment explanation
Indices: 10214017--10214090 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
10214007 TTTTCCCAAT
*
10214017 TCGCAATGCGAATAAGTAAA
1 TCGCAACGCGAATAAGTAAA
** *
10214037 TCGCAACGCGAATTGGGAAAA
1 TCGCAACGCGAA-TAAGTAAA
*
10214058 TCGCAATGCGAATAAGTAAA
1 TCGCAACGCGAATAAGTAAA
10214078 TCGCAACGCGAAT
1 TCGCAACGCGAAT
10214091 TGGGAAAATC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.41, C:0.19, G:0.23, T:0.18
Consensus pattern (20 bp):
TCGCAACGCGAATAAGTAAA
Found at i:10214060 original size:21 final size:21
Alignment explanation
Indices: 10214034--10214104 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
10214024 GCGAATAAGT
10214034 AAATCGCAACGCGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
* ** *
10214055 AAATCGCAATGCGAA-TAAGT
1 AAATCGCAACGCGAATTGGGA
10214075 AAATCGCAACGCGAATTGGGA
1 AAATCGCAACGCGAATTGGGA
10214096 AAATCGCAA
1 AAATCGCAA
10214105 TGTGATACTG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.39
21 25 0.61
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (21 bp):
AAATCGCAACGCGAATTGGGA
Found at i:10214124 original size:41 final size:41
Alignment explanation
Indices: 10214017--10214106 Score: 180
Period size: 41 Copynumber: 2.2 Consensus size: 41
10214007 TTTTCCCAAT
10214017 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
10214058 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
10214099 TCGCAATG
1 TCGCAATG
10214107 TGATACTGAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.18
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:10214140 original size:41 final size:41
Alignment explanation
Indices: 10214095--10214172 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
10214085 GCGAATTGGG
* * *
10214095 AAAATCGCAATGTGATACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
* * *
10214136 AAAATCGCAACGAGATACTTACTTTTGCAACGCGATA
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATA
10214173 CTGACTTTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATAATAA
Found at i:10214167 original size:20 final size:20
Alignment explanation
Indices: 10214140--10214192 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
10214130 TAATAAAAAA
* *
10214140 TCGCAACGAGATACTTACTT
1 TCGCAACGCGATACTGACTT
*
10214160 TTGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
10214180 TCGCAACGCGATA
1 TCGCAACGCGATA
10214193 ATACATAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:10214417 original size:22 final size:22
Alignment explanation
Indices: 10214380--10214423 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10214370 GACTCTCTCA
*
10214380 CCCATCTCCGACGAAATTCGTC
1 CCCATCTCCGACGAAATCCGTC
**
10214402 CCCATCTCCGGTGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
10214424 TATCTAAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.20, C:0.41, G:0.16, T:0.23
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:10214696 original size:20 final size:20
Alignment explanation
Indices: 10214673--10214710 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10214663 TTAGTTTCTC
10214673 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
10214693 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
10214711 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:10216051 original size:18 final size:18
Alignment explanation
Indices: 10216030--10216074 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
10216020 TCCACTTCGG
*
10216030 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
10216048 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
10216066 GAGCCATCA
1 GAGCCATCA
10216075 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:10216572 original size:20 final size:20
Alignment explanation
Indices: 10216547--10216592 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
10216537 TAGTTTACTT
10216547 TCGCAACAC-GAAAATGACTA
1 TCGCAACACGGAAAATG-CTA
* *
10216567 TCGCAACGCGGAAATTGCTA
1 TCGCAACACGGAAAATGCTA
10216587 TCGCAA
1 TCGCAA
10216593 TGCGAAATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (20 bp):
TCGCAACACGGAAAATGCTA
Found at i:10216621 original size:14 final size:14
Alignment explanation
Indices: 10216602--10216659 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
10216592 ATGCGAAATG
10216602 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
10216616 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
10216632 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
10216648 AAAATCGCAACG
1 AAAATCGCAACG
10216660 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:10216644 original size:32 final size:33
Alignment explanation
Indices: 10216586--10216676 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
10216576 GGAAATTGCT
10216586 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
10216619 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
10216651 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
10216677 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:10216712 original size:14 final size:14
Alignment explanation
Indices: 10216693--10216750 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
10216683 TTGTGTTTCG
10216693 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
10216707 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
10216723 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
10216739 CGTTGCGATTTT
1 CGTTGCGATTTT
10216751 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:10216727 original size:32 final size:33
Alignment explanation
Indices: 10216688--10216766 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
10216678 GCGATTTGTG
10216688 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
10216720 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
*
10216753 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
10216767 AGCCATTTCC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 27 0.60
33 18 0.40
ACGTcount: A:0.10, C:0.19, G:0.24, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
Found at i:10216765 original size:19 final size:19
Alignment explanation
Indices: 10216707--10216824 Score: 95
Period size: 20 Copynumber: 6.4 Consensus size: 19
10216697 GCGATTTTGT
10216707 CGTTGCGA-TTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
10216725 CGTTGCGA-TTT--TGT--
1 CGTTGCGATTTTCATTTCG
10216739 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* ***
10216758 CATTGCGATAGCCATTTCCG
1 CGTTGCGATTTTCATTT-CG
**
10216778 CGTTGCGATAGTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
10216797 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTCA-TTTCG
*
10216817 TGTTGCGA
1 CGTTGCGA
10216825 AAGTAAACTA
Statistics
Matches: 81, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
14 8 0.10
15 3 0.04
16 2 0.02
17 2 0.02
18 11 0.14
19 26 0.32
20 29 0.36
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.42
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:10218841 original size:19 final size:19
Alignment explanation
Indices: 10218819--10218886 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
10218809 ATCGCAACGA
10218819 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
10218838 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
10218857 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
10218871 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
10218887 TTTTCATTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
14 11 0.24
15 1 0.02
16 2 0.04
17 2 0.04
19 30 0.65
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:10218962 original size:20 final size:20
Alignment explanation
Indices: 10218905--10218962 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
10218895 TCACATTGCG
* *
10218905 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAGCC
10218925 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
10218945 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
10218963 TCAAATGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:10220049 original size:24 final size:24
Alignment explanation
Indices: 10220022--10220075 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
10220012 GTATTCGAAA
* *
10220022 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
10220046 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
10220070 TTTGAT
1 TTTGAT
10220076 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:10220267 original size:12 final size:12
Alignment explanation
Indices: 10220250--10220274 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10220240 ATATAATCCT
10220250 GAAGAAGAAAAA
1 GAAGAAGAAAAA
10220262 GAAGAAGAAAAA
1 GAAGAAGAAAAA
10220274 G
1 G
10220275 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:10222589 original size:19 final size:19
Alignment explanation
Indices: 10222567--10222658 Score: 87
Period size: 19 Copynumber: 5.4 Consensus size: 19
10222557 GGAAATTACT
10222567 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
10222586 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
10222600 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
10222619 ATCGCAATGC----T-AAT
1 ATCGCAATGCGAAATGAAA
*
10222633 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
10222652 ATCGCAA
1 ATCGCAA
10222659 CGAGGGAATC
Statistics
Matches: 57, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
14 21 0.37
15 2 0.04
16 2 0.04
17 2 0.04
18 2 0.04
19 28 0.49
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.17
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:10222609 original size:33 final size:33
Alignment explanation
Indices: 10222567--10222678 Score: 163
Period size: 33 Copynumber: 3.4 Consensus size: 33
10222557 GGAAATTACT
10222567 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* **
10222600 ATCGCAATGCGAAATGAAAATCGCAATGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
10222632 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
10222666 ATCGCAATGCGAA
1 ATCGCAATGCGAA
10222679 TTCATTTTCG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
32 1 0.01
33 66 0.97
34 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:10222856 original size:14 final size:14
Alignment explanation
Indices: 10222837--10222873 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
10222827 CATCAATTAA
10222837 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
10222851 ACAAATCACCTTTT
1 ACAAATCAACTTTT
10222865 ACAAATCAA
1 ACAAATCAA
10222874 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:10224301 original size:21 final size:21
Alignment explanation
Indices: 10224235--10224301 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
10224225 GTGAATCGGG
*
10224235 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
10224255 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
10224277 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
10224298 CTCT
1 CTCT
10224302 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:10224320 original size:42 final size:41
Alignment explanation
Indices: 10224235--10224357 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
10224225 GTGAATCGGG
* * * * *
10224235 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
10224277 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
10224319 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
10224358 CGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:10226443 original size:33 final size:33
Alignment explanation
Indices: 10226382--10226480 Score: 135
Period size: 33 Copynumber: 3.0 Consensus size: 33
10226372 ACGAGATAAT
* *
10226382 GAGAATCGCAACGCGGAAGTGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
10226416 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* **
10226449 GACAATCGCAACGCGAAATGAAAATCGCAACC
1 GAGAATCGCAACGCGAAATGACTATCGCAACC
10226481 GCGAAATAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
33 44 0.76
34 14 0.24
ACGTcount: A:0.38, C:0.26, G:0.24, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:10226474 original size:19 final size:19
Alignment explanation
Indices: 10226357--10226541 Score: 165
Period size: 19 Copynumber: 10.1 Consensus size: 19
10226347 TCTTTTGGTT
*
10226357 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
10226376 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
* **
10226396 GGAAGTGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
10226414 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
10226430 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
10226448 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
10226463 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
10226483 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
10226502 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
10226521 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
10226540 GA
1 GA
10226542 TTTTGGTTTC
Statistics
Matches: 136, Mismatches: 17, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
14 19 0.14
15 2 0.01
16 2 0.01
17 1 0.01
18 4 0.03
19 62 0.46
20 44 0.32
21 2 0.01
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:10226495 original size:39 final size:38
Alignment explanation
Indices: 10226452--10226541 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 38
10226442 GCGACCAGAC
10226452 AATCGCAACGCGAAATGAAAATCGCAACCGCGAAATAAA
1 AATCGCAACGCGAAATGAAAATCGCAA-CGCGAAATAAA
*
10226491 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATAAA
*
10226529 AATCGCAATGCGA
1 AATCGCAACGCGA
10226542 TTTTGGTTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 22 0.45
39 27 0.55
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (38 bp):
AATCGCAACGCGAAATGAAAATCGCAACGCGAAATAAA
Found at i:10226559 original size:19 final size:19
Alignment explanation
Indices: 10226537--10226584 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
10226527 AAAATCGCAA
*
10226537 TGCGATTTTGGTTT-CGCGT
1 TGCGATTTT-ATTTCCGCGT
*
10226556 TGCGATAGTTATTTCCGCGT
1 TGCGAT-TTTATTTCCGCGT
10226576 TGCGATTTT
1 TGCGATTTT
10226585 CATTCTCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.10, C:0.17, G:0.27, T:0.46
Consensus pattern (19 bp):
TGCGATTTTATTTCCGCGT
Found at i:10227173 original size:41 final size:41
Alignment explanation
Indices: 10227121--10227198 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
10227111 CGAAAGTCAG
* * *
10227121 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTTTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
*
10227162 TATCGCATTGCGATAGTAAGTATCGCATTGCGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTT
10227199 CCCAATTCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.23, C:0.15, G:0.22, T:0.40
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
Found at i:10227195 original size:20 final size:20
Alignment explanation
Indices: 10227102--10227195 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
10227092 CGCTATGTAA
* *
10227102 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTAAGT
*
10227122 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
* ** * *
10227142 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTAAGT
*
10227163 ATCGCATTGCGATAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
*
10227183 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
10227196 TTTCCCAATT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTAAGT
Found at i:10227214 original size:41 final size:41
Alignment explanation
Indices: 10227164--10227276 Score: 138
Period size: 41 Copynumber: 2.8 Consensus size: 41
10227154 TTTTTTATTA
*
10227164 TCGCATTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGAT-GTAAGTATTCGCATTGCGATTTTCCCAAT
* * **
10227205 TCGTGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATGTAAGTATTCGCATTGCGATTTTCCCAAT
* **
10227246 TCGCGTTGCGATTTACTTATTCGCATTGCGA
1 TCGCGTTGCGATGTAAGTATTCGCATTGCGA
10227277 ATTGGGAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 4 0.06
41 61 0.94
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATGTAAGTATTCGCATTGCGATTTTCCCAAT
Found at i:10227215 original size:21 final size:21
Alignment explanation
Indices: 10227184--10227259 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
10227174 ATAGTAAGTA
*
10227184 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
* * **
10227205 TCGTGTTGCGA-TTTACTTAT
1 TCGCGTTGCGATTTTCCCAAT
*
10227225 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
10227246 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
10227260 ACTTATTCGC
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 15 0.35
21 28 0.65
ACGTcount: A:0.16, C:0.24, G:0.18, T:0.42
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCCAAT
Found at i:10227233 original size:20 final size:20
Alignment explanation
Indices: 10227210--10227276 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
10227200 CCAATTCGTG
10227210 TTGCGATTTACTTATTCGCA
1 TTGCGATTTACTTATTCGCA
* ** *
10227230 TTGCGATTTTCCCAATTCGCG
1 TTGCGA-TTTACTTATTCGCA
10227251 TTGCGATTTACTTATTCGCA
1 TTGCGATTTACTTATTCGCA
10227271 TTGCGA
1 TTGCGA
10227277 ATTGGGAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (20 bp):
TTGCGATTTACTTATTCGCA
Found at i:10227510 original size:12 final size:12
Alignment explanation
Indices: 10227493--10227521 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10227483 CTCAAACAAA
10227493 AATATCAAAACG
1 AATATCAAAACG
10227505 AATATCAAAACG
1 AATATCAAAACG
10227517 -ATATC
1 AATATC
10227522 GTTTAGATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.21
Consensus pattern (12 bp):
AATATCAAAACG
Found at i:10228583 original size:29 final size:32
Alignment explanation
Indices: 10228539--10228613 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 32
10228529 TTTAAATAGT
*
10228539 TATTATTTTTATATT-AAT-ATATTTATGTAAA
1 TATTATTTTT-TATTAAATAATATTTATATAAA
*
10228570 TATT-TTTTTTATTAAATAATATTTATATAAT
1 TATTATTTTTTATTAAATAATATTTATATAAA
10228601 TATTATTTATTTA
1 TATTATTT-TTTA
10228614 GAATTATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 4 0.11
30 8 0.21
31 19 0.50
32 3 0.08
33 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (32 bp):
TATTATTTTTTATTAAATAATATTTATATAAA
Found at i:10228639 original size:47 final size:45
Alignment explanation
Indices: 10228540--10228639 Score: 105
Period size: 45 Copynumber: 2.2 Consensus size: 45
10228530 TTAAATAGTT
* *
10228540 ATTATTTTTATATTAATATATTTATGTAAATATTTTTTTTATTAA
1 ATTATATTTATATTAATATATTTATGTAAATATTTTTTTTACTAA
* * *
10228585 ATAATATTTATA-TAATTATTATTTATTTAGAATTATTTTTTTTGCT-A
1 ATTATATTTATATTAA-TA-TATTTATGTA-AA-TATTTTTTTTACTAA
10228632 ATTATATT
1 ATTATATT
10228640 GTTTTGTCTA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
44 3 0.07
45 12 0.27
46 9 0.20
47 10 0.22
48 11 0.24
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (45 bp):
ATTATATTTATATTAATATATTTATGTAAATATTTTTTTTACTAA
Found at i:10230361 original size:21 final size:21
Alignment explanation
Indices: 10230331--10230378 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
10230321 GCAGGGGTAC
* *
10230331 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
10230352 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
10230373 ATGCCA
1 ATGCCA
10230379 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:10230408 original size:21 final size:21
Alignment explanation
Indices: 10230382--10230475 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
10230372 TATGCCATCT
* *
10230382 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
10230403 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
10230424 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
10230445 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
10230466 CCGCAGGGTT
1 CCGCAGGGTT
10230476 TTATACCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 2 0.03
21 65 0.94
22 2 0.03
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:10231055 original size:33 final size:34
Alignment explanation
Indices: 10230996--10231092 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 34
10230986 TAAATGTTTT
*
10230996 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * *
10231030 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* *
10231063 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATAAAAATTATATTATTCGAAATTTAA
10231093 CATTAAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 28 0.51
34 27 0.49
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCGAAATTTAAAATA
Found at i:10231099 original size:34 final size:33
Alignment explanation
Indices: 10230994--10231099 Score: 133
Period size: 34 Copynumber: 3.2 Consensus size: 33
10230984 GATAAATGTT
*
10230994 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTT-AAA
* *
10231028 TAAAAATAAAAATAATATTATTC-AAATTTAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAA
* *
10231060 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 -TTAAAATAAAAATTATATTATTCGAAATTTAA-A
10231095 TTAAA
1 TTAAA
10231100 TTTCAACTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
32 3 0.05
33 25 0.40
34 33 0.53
35 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAA
Found at i:10231703 original size:126 final size:126
Alignment explanation
Indices: 10231478--10231956 Score: 922
Period size: 126 Copynumber: 3.8 Consensus size: 126
10231468 TTTAAGTTAT
*
10231478 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
10231543 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
10231604 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
10231669 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
*
10231730 TCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
* *
10231795 GAGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATATAGTG
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
10231856 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
1 TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
10231921 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAA
66 GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAA
10231957 CCGATTATAG
Statistics
Matches: 347, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 347 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (126 bp):
TCCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGC
GCGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTG
Found at i:10232037 original size:8 final size:8
Alignment explanation
Indices: 10232024--10232064 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
10232014 TCACAATCTT
10232024 TCAAATTC
1 TCAAATTC
10232032 TCAAATTC
1 TCAAATTC
* *
10232040 CCAAACTC
1 TCAAATTC
10232048 T-AAATTC
1 TCAAATTC
10232055 TCAAATTC
1 TCAAATTC
10232063 TC
1 TC
10232065 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (8 bp):
TCAAATTC
Found at i:10235076 original size:13 final size:13
Alignment explanation
Indices: 10235058--10235097 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
10235048 TACATAAATA
10235058 TATTTAATATAAT
1 TATTTAATATAAT
10235071 TATTTAATATAA-
1 TATTTAATATAAT
*
10235083 TATTTAATATTAT
1 TATTTAATATAAT
10235096 TA
1 TA
10235098 GTTATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TATTTAATATAAT
Found at i:10237044 original size:31 final size:28
Alignment explanation
Indices: 10237006--10237082 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 28
10236996 AATTACACGC
* *
10237006 TTACTCACTGAACTTTATTCTTTTTCCTATT
1 TTACTCACTGAACTTTAAT-TTTTT-C-AAT
*
10237037 TTACTCACTGTACTTTCAATTTTTTCAAT
1 TTACTCACTGAACTTT-AATTTTTTCAAT
*
10237066 TTGCTCACTGAACTTTA
1 TTACTCACTGAACTTTA
10237083 GACATTGAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 16 0.40
30 1 0.03
31 20 0.50
32 2 0.05
ACGTcount: A:0.22, C:0.22, G:0.05, T:0.51
Consensus pattern (28 bp):
TTACTCACTGAACTTTAATTTTTTCAAT
Found at i:10242812 original size:12 final size:12
Alignment explanation
Indices: 10242795--10242829 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10242785 ATGTGATATT
10242795 TTATTTTTTAAA
1 TTATTTTTTAAA
*
10242807 TTATTTTTTATA
1 TTATTTTTTAAA
*
10242819 TTATTATTTAA
1 TTATTTTTTAA
10242830 TTGATTTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATTTTTTAAA
Found at i:10244893 original size:19 final size:19
Alignment explanation
Indices: 10244869--10244906 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
10244859 ATATCGTTTC
10244869 TTATTTACAATAATTTAAT
1 TTATTTACAATAATTTAAT
* *
10244888 TTATTTCCGATAATTTAAT
1 TTATTTACAATAATTTAAT
10244907 AGGTTTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.53
Consensus pattern (19 bp):
TTATTTACAATAATTTAAT
Found at i:10247913 original size:10 final size:9
Alignment explanation
Indices: 10247898--10247947 Score: 52
Period size: 8 Copynumber: 5.7 Consensus size: 9
10247888 TTATTATTTT
10247898 TATTATATGA
1 TATTATAT-A
10247908 TATTATATA
1 TATTATATA
10247917 TA-TATATA
1 TATTATATA
10247925 TA-TATATA
1 TATTATATA
*
10247933 TTATT-TATT
1 -TATTATATA
10247942 TATTAT
1 TATTAT
10247948 TTATTTTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
8 18 0.50
9 9 0.25
10 9 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (9 bp):
TATTATATA
Found at i:10247918 original size:2 final size:2
Alignment explanation
Indices: 10247901--10247933 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
10247891 TTATTTTTAT
10247901 TA TA TGA TA T- TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T
10247934 TATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.03
2 26 0.90
3 2 0.07
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10248013 original size:17 final size:18
Alignment explanation
Indices: 10247978--10248014 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
10247968 TATTAATTCT
10247978 TTTTATTTGTTTATTTTA
1 TTTTATTTGTTTATTTTA
*
10247996 TTTTATTT-TTTGTTTTA
1 TTTTATTTGTTTATTTTA
10248013 TT
1 TT
10248015 ACTTTGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.81
Consensus pattern (18 bp):
TTTTATTTGTTTATTTTA
Found at i:10248433 original size:33 final size:32
Alignment explanation
Indices: 10248396--10248470 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 32
10248386 CTTTTTCCTT
10248396 TTTTTATTTTCTTCGATTGACTTT-TTTTTATCA
1 TTTTTATTTTCTTC-ATTGA-TTTATTTTTATCA
* * * *
10248429 TTTTTTTGTTTTTTCTTTGATTTATTTTTTTCA
1 TTTTTAT-TTTCTTCATTGATTTATTTTTATCA
10248462 TTTTTATTT
1 TTTTTATTT
10248471 ATTTATTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
32 5 0.14
33 24 0.69
34 6 0.17
ACGTcount: A:0.12, C:0.08, G:0.05, T:0.75
Consensus pattern (32 bp):
TTTTTATTTTCTTCATTGATTTATTTTTATCA
Found at i:10248471 original size:4 final size:4
Alignment explanation
Indices: 10248464--10248495 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
10248454 TTTTTTCATT
10248464 TTTA TTTA TTTA TTTA TTTA --TA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
10248496 ATTATTATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 2 0.08
4 24 0.92
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:10248474 original size:10 final size:10
Alignment explanation
Indices: 10248448--10248501 Score: 56
Period size: 10 Copynumber: 5.3 Consensus size: 10
10248438 TTTTTCTTTG
10248448 ATTTATTTTT
1 ATTTATTTTT
*
10248458 -TTCATTTTT
1 ATTTATTTTT
10248467 ATTTATTTATTT
1 ATTTA-TT-TTT
*
10248479 ATTTATATTT
1 ATTTATTTTT
*
10248489 ATTTATTATT
1 ATTTATTTTT
10248499 ATT
1 ATT
10248502 ATCATTATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
9 8 0.22
10 17 0.47
11 3 0.08
12 8 0.22
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:10248487 original size:18 final size:19
Alignment explanation
Indices: 10248448--10248495 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 19
10248438 TTTTTCTTTG
* *
10248448 ATTTATTTTTTTCATTTTT
1 ATTTATTTATTTCATTTAT
10248467 ATTTATTTATTT-ATTTAT
1 ATTTATTTATTTCATTTAT
10248485 ATTTATTTATT
1 ATTTATTTATT
10248496 ATTATTATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 16 0.59
19 11 0.41
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (19 bp):
ATTTATTTATTTCATTTAT
Found at i:10250276 original size:18 final size:16
Alignment explanation
Indices: 10250240--10250281 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 16
10250230 ATATTTCGCA
10250240 TTTTTTTCTTTCCTTC
1 TTTTTTTCTTTCCTTC
10250256 TTTTTCTTCTTTCCTTTC
1 TTTTT-TTCTTTCC-TTC
10250274 TTTTTTTC
1 TTTTTTTC
10250282 CTCATTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.21
17 11 0.46
18 8 0.33
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTTCTTTCCTTC
Found at i:10251302 original size:98 final size:95
Alignment explanation
Indices: 10251041--10251303 Score: 316
Period size: 95 Copynumber: 2.7 Consensus size: 95
10251031 AAAATATAAT
** * * * **
10251041 ATTATATATATACAATAAAGCTTGAGATGTCCCTCTAAAGCAATTGGTT-AAATGCCCCGAATTT
1 ATTATA-ATATACAATAAAAATTAAGTTGTCCCTCTAGAGCAATTGGTTAAAAT-CCCCGGCTTT
*
10251105 ATGGATAAGATTCAGCTAGCCTGATAAAGGTG
64 ATGGATAAGATTCAGCTAACCTGATAAAGGTG
* * *
10251137 ATTATAATATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAAGA-CCCTGGCTTTA
1 ATTATAATATACAATAAAAATTAAGTTGTCCCTCTAGAGCAATTGGTTAAA-ATCCCCGGCTTTA
*
10251201 TGGATAATATTCAGCTAACCTGATAAAGGTG
65 TGGATAAGATTCAGCTAACCTGATAAAGGTG
* *
10251232 ATTATAATAT-CTATACAATGATATTAAGTTGTCCCTCTAGAGCAATTAGTTAAAATCCCCGGCT
1 ATTATAATATACAATA-AA--A-ATTAAGTTGTCCCTCTAGAGCAATTGGTTAAAATCCCCGGCT
10251296 TTATGGAT
62 TTATGGAT
10251304 TCAGCTAGCC
Statistics
Matches: 147, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
94 4 0.03
95 88 0.60
96 8 0.05
97 3 0.02
98 44 0.30
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (95 bp):
ATTATAATATACAATAAAAATTAAGTTGTCCCTCTAGAGCAATTGGTTAAAATCCCCGGCTTTAT
GGATAAGATTCAGCTAACCTGATAAAGGTG
Found at i:10253072 original size:84 final size:84
Alignment explanation
Indices: 10252919--10253537 Score: 706
Period size: 84 Copynumber: 7.3 Consensus size: 84
10252909 GAAACTATTG
* * * *** *
10252919 GCAGCATAACTCAAGGCTAGAAGGGTTATCTGATAACAAAAGACCTTTGAGTTCGACTACACTCA
1 GCAGCATAACTCAAGGCAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGACTACACTCA
10252984 GCTCCAAGGCACATCATTT
66 GCTCCAAGGCACATCATTT
* * * * * * * *
10253003 GCAACGTAGCTTAAGGCAATAAGGGTTATTTTCCAATAAAAGACCTTCGAGTTCGACTACGCTCA
1 GCAGCATAACTCAAGGCAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGACTACACTCA
10253068 GCTCCAAGGCACACATCATTT
66 GCTCCAAGG--CACATCATTT
* * * * * * *
10253089 GCAGCATAACTCAAGGCTAGAAGAGTTATCTGCCAACAAAAGACCTTCGAGTTTGACTACATTCA
1 GCAGCATAACTCAAGGCAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGACTACACTCA
*
10253154 GCTCCAAGGCACATCGTTT
66 GCTCCAAGGCACATCATTT
* * * * *
10253173 GCAACATAGCTCAAGGCAAGAAGGGCTATTTACCAACAAAAAACCTTCGAGTTCGATTACACTCA
1 GCAGCATAACTCAAGGCAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGACTACACTCA
* *
10253238 GCTCAAAGGCACAACATTT
66 GCTCCAAGGCACATCATTT
* * * * * * *
10253257 GTAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCAACTACGCTTA
1 GCAGCATAACTCAAGGCAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGACTACACTCA
*
10253322 GCTCCAAGGCACATAATTT
66 GCTCCAAGGCACATCATTT
* * *
10253341 GCAGCATAACTCAAGGCAAAAAGGGTTATTTGT-CAACAAAAGACCTTCGAGTTCGATTACACTC
1 GCAGCATAACTCAAGGCAAGAAGGGCTATTT-TCCAACAAAAGACCTTCGAGTTCGACTACACTC
10253405 AGCTCCAAGGCACATCATTT
65 AGCTCCAAGGCACATCATTT
* * * *
10253425 GCAGCATAGCTCAAGGCGAGAAGGGCTATCTGTT--AAC-CAAGACCTTCGAGTTCGATTACACT
1 GCAGCATAACTCAAGGCAAGAAGGGCTAT-T-TTCCAACAAAAGACCTTCGAGTTCGACTACACT
* * *
10253487 CAGCTCAAAGACACGTCATTT
64 CAGCTCCAAGGCACATCATTT
* *
10253508 AACAGCATAGCTCAAGGCAAGAAGGGCTAT
1 -GCAGCATAACTCAAGGCAAGAAGGGCTAT
10253538 CTGTCAACAT
Statistics
Matches: 453, Mismatches: 76, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
83 42 0.09
84 337 0.74
85 2 0.00
86 72 0.16
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (84 bp):
GCAGCATAACTCAAGGCAAGAAGGGCTATTTTCCAACAAAAGACCTTCGAGTTCGACTACACTCA
GCTCCAAGGCACATCATTT
Found at i:10253451 original size:252 final size:252
Alignment explanation
Indices: 10252919--10253546 Score: 821
Period size: 252 Copynumber: 2.5 Consensus size: 252
10252909 GAAACTATTG
* * * * * *
10252919 GCAGCATAACTCAAGGCTAGAAGGGTTATCTGATAACAAAAGACCTTTGAGTTCGACTACACTCA
1 GCAGCATAGCTCAAGGCAAGAAGGGCTAT-TTATAACAAAAGACCTTCGAGTTCGATTACACTCA
* * * * * * * * *
10252984 GCTCCAAGGCACATCATTTGCAACGTAGCTTAAGGCAATAAGGGTTATTTTCCAATAAAAGACCT
65 GCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCT
* * * *
10253049 TCGAGTTCGACTACGCTCAGCTCCAAGGCACACATCATTTGCAGCATAACTCAAGGCTAGAAGAG
130 TCGAGTTCAACTACGCTCAGCTCCAAGG-ACACATAATTTGCAGCATAACTCAAGGCAAAAAGAG
* * *
10253114 TTATCTGCCAACAAAAGACCTTCGAGTTTGACTACATTCAGCTCCAAGGCACATCGTTT
194 TTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
* * *
10253173 GCAACATAGCTCAAGGCAAGAAGGGCTATTTACCAACAAAAAACCTTCGAGTTCGATTACACTCA
1 GCAGCATAGCTCAAGGCAAGAAGGGCTATTTA-TAACAAAAGACCTTCGAGTTCGATTACACTCA
* * * *
10253238 GCTCAAAGGCACAACATTTGTAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCT
65 GCTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCT
* *
10253303 TCGAGTTCAACTACGCTTAGCTCCAAGG-CACATAATTTGCAGCATAACTCAAGGCAAAAAGGGT
130 TCGAGTTCAACTACGCTCAGCTCCAAGGACACATAATTTGCAGCATAACTCAAGGCAAAAAGAGT
* * *
10253367 TATTTGTCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTT
195 TATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
* *
10253425 GCAGCATAGCTCAAGGCGAGAAGGGCTATCTGT-TAAC-CAAGACCTTCGAGTTCGATTACACTC
1 GCAGCATAGCTCAAGGCAAGAAGGGCTAT-T-TATAACAAAAGACCTTCGAGTTCGATTACACTC
* * * *
10253488 AGCTCAAAGACACGTCATTTAACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAACA
64 AGCTCAAAGGCACATCATTT-GCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACA
10253547 TAATTATCGA
Statistics
Matches: 323, Mismatches: 47, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
251 41 0.13
252 147 0.46
253 3 0.01
254 132 0.41
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (252 bp):
GCAGCATAGCTCAAGGCAAGAAGGGCTATTTATAACAAAAGACCTTCGAGTTCGATTACACTCAG
CTCAAAGGCACATCATTTGCAGCATAGCTCAAGGCAAGAAGGGCTATCTGCCAACAAAAGACCTT
CGAGTTCAACTACGCTCAGCTCCAAGGACACATAATTTGCAGCATAACTCAAGGCAAAAAGAGTT
ATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTT
Found at i:10253545 original size:168 final size:168
Alignment explanation
Indices: 10252919--10253546 Score: 819
Period size: 168 Copynumber: 3.7 Consensus size: 168
10252909 GAAACTATTG
* * ** *
10252919 GCAGCATAACTCAAGGCTAGAAGGGTTATCTGATAACAAAAGACCTTTGAGTTCGACTACACTCA
1 GCAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCA
* * * * *
10252984 GCTCCAAGGCACATCATTTGCAACGTAGCTTAAGGCAATAAGGGTTATTT-TCCAATAAAAGACC
66 GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGT-CAACAAAAGACC
* *
10253048 TTCGAGTTCGACTACGCTCAGCTCCAAGGCACACATCATTT
130 TTCGAGTTCGATTACACTCAGCTCCAAGG--CACATCATTT
* * * * *
10253089 GCAGCATAACTCAAGGCTAGAAGAGTTATCTGCCAACAAAAGACCTTCGAGTTTGACTACATTCA
1 GCAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCA
* ** *
10253154 GCTCCAAGGCACATCGTTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTACCAACAAAAAACCT
66 GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGTCAACAAAAGACCT
* *
10253219 TCGAGTTCGATTACACTCAGCTCAAAGGCACAACATTT
131 TCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTT
* * * *
10253257 GTAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCAACTACGCTTA
1 GCAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCA
* * * * *
10253322 GCTCCAAGGCACATAATTTGCAGCATAACTCAAGGCAAAAAGGGTTATTTGTCAACAAAAGACCT
66 GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGTCAACAAAAGACCT
10253387 TCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTT
131 TCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTT
* ** * *
10253425 GCAGCATAGCTCAAGGCGAGAAGGGCTATCTGTTAAC-CAAGACCTTCGAGTTCGATTACACTCA
1 GCAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCA
* * * * * *
10253489 GCTCAAAGACACGTCATTTAACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAACA
66 GCTCCAAGGCACATCATTT-GCAACATAGCTCAAGGCAAGAAGGGCTATTTGTCAACA
10253547 TAATTATCGA
Statistics
Matches: 400, Mismatches: 56, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
167 37 0.09
168 223 0.56
170 140 0.35
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (168 bp):
GCAGCATAACTCAAGGCGAGAAGGGCTATCTGCCAACAAAAGACCTTCGAGTTCGACTACACTCA
GCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGCTATTTGTCAACAAAAGACCT
TCGAGTTCGATTACACTCAGCTCCAAGGCACATCATTT
Found at i:10255213 original size:29 final size:28
Alignment explanation
Indices: 10255176--10255231 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
10255166 AATTTAATCC
*
10255176 TTTTATTTA-TTTTTATACATTTTTATTT
1 TTTTATTTACTTCTTAT-CATTTTTATTT
*
10255204 TTTTATTTTACTTCTTATTATTTTTATT
1 TTTTA-TTTACTTCTTATCATTTTTATT
10255232 ATACGATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (28 bp):
TTTTATTTACTTCTTATCATTTTTATTT
Found at i:10255229 original size:21 final size:21
Alignment explanation
Indices: 10255198--10255296 Score: 62
Period size: 21 Copynumber: 4.8 Consensus size: 21
10255188 TTATACATTT
10255198 TTATT-TTTTTATTTTACTTC
1 TTATTATTTTTATTTTACTTC
* * *
10255218 TTATTATTTTTATTATACGATA
1 TTATTATTTTTATTTTAC-TTC
* * *
10255240 TTA-TATATATATTTTA-TTT
1 TTATTATTTTTATTTTACTTC
* * *
10255259 TTATTTTTATTTATTTTAATCC
1 TTATTATT-TTTATTTTACTTC
10255281 TT-TTATTATTTATTTT
1 TTATTATT-TTTATTTT
10255297 TATTTGTTTA
Statistics
Matches: 60, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
19 4 0.07
20 7 0.12
21 42 0.70
22 7 0.12
ACGTcount: A:0.24, C:0.05, G:0.01, T:0.70
Consensus pattern (21 bp):
TTATTATTTTTATTTTACTTC
Found at i:10255260 original size:6 final size:6
Alignment explanation
Indices: 10255251--10255331 Score: 71
Period size: 6 Copynumber: 13.2 Consensus size: 6
10255241 TATATATATA
*
10255251 TTTTAT TTTTAT TTTTA- -TTTAT TTTAAT CCTTTTAT TATTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT --TTTTAT T-TTTAT TTTTAT
10255300 TTGTT-T ATTTTAT TTTTAT TTTT-T GTTTTAT T
1 TT-TTAT -TTTTAT TTTTAT TTTTAT -TTTTAT T
10255332 ACTTTGTTTA
Statistics
Matches: 63, Mismatches: 2, Indels: 20
0.74 0.02 0.24
Matches are distributed among these distances:
4 4 0.06
5 1 0.02
6 41 0.65
7 12 0.19
8 5 0.08
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:10255287 original size:56 final size:55
Alignment explanation
Indices: 10255225--10255378 Score: 136
Period size: 56 Copynumber: 2.8 Consensus size: 55
10255215 TTCTTATTAT
*
10255225 TTTTATTATACGATATTATATATATATTTTATTTTTATTTTTATTTATTTTAATCC
1 TTTTATTATACGATATTATATATATATTTTATTTTTATTTTT-TTTATTTTAATAC
** * * * * * *
10255281 TTTTATTAT-TTATTTTTATTTGTTTATTTTATTTTTA--TTTTTTGTTTTATTAC
1 TTTTATTATACGA-TATTATATATATATTTTATTTTTATTTTTTTTATTTTAATAC
* * *
10255334 TTTGT-TTATACGTTATTATATATATATATATATTTCTATTTTTTT
1 TTT-TATTATACGATATTATATATATAT-TTTATTTTTATTTTTTT
10255379 ATTATTTATT
Statistics
Matches: 74, Mismatches: 18, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
53 27 0.36
54 12 0.16
55 1 0.01
56 34 0.46
ACGTcount: A:0.24, C:0.04, G:0.03, T:0.69
Consensus pattern (55 bp):
TTTTATTATACGATATTATATATATATTTTATTTTTATTTTTTTTATTTTAATAC
Found at i:10255292 original size:121 final size:116
Alignment explanation
Indices: 10255159--10255393 Score: 243
Period size: 115 Copynumber: 2.0 Consensus size: 116
10255149 AATTTTGTTT
10255159 CTTTTTTAATTTAATCCTTTTATTTATTT-TTATACATTTTTATTTTTT-TATT-TTACTTCT-T
1 CTTTTTTAATTT-AT--TTTTATTTATTTATT-T-CATTTTTATTTTTTGTATTATTACTT-TGT
** *
10255220 ATTAT-TTTTATTATACGATATTATATATATATTT-TATTTTTATTTTTATTTATT-TTAATC
60 -TTATACGTTATTAT---ATA-TATATATATATTTCTATTTTT-TTATTATTTATTATTAATC
* * *
10255280 CTTTTATT-ATTTATTTTTATTTGTTTATTTTATTTTTATTTTTTGTTTTATTACTTTGTTTATA
1 CTTTT-TTAATTTATTTTTATTTATTTATTTCATTTTTATTTTTTGTATTATTACTTTGTTTATA
10255344 CGTTATTATATATATATATATATTTCTATTTTTTTATTATTTATTATTAA
65 CGTTATTATATATATATATATATTTCTATTTTTTTATTATTTATTATTAA
10255394 CGTATATATA
Statistics
Matches: 100, Mismatches: 6, Indels: 21
0.79 0.05 0.17
Matches are distributed among these distances:
115 24 0.24
116 14 0.14
117 13 0.13
118 20 0.20
119 16 0.16
120 2 0.02
121 9 0.09
122 2 0.02
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (116 bp):
CTTTTTTAATTTATTTTTATTTATTTATTTCATTTTTATTTTTTGTATTATTACTTTGTTTATAC
GTTATTATATATATATATATATTTCTATTTTTTTATTATTTATTATTAATC
Found at i:10255481 original size:8 final size:9
Alignment explanation
Indices: 10255456--10255480 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10255446 ATACTTACTC
10255456 TTTTTTTTA
1 TTTTTTTTA
10255465 TTTTTTTTA
1 TTTTTTTTA
10255474 TTTTTTT
1 TTTTTTT
10255481 ACTTATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:10256991 original size:23 final size:24
Alignment explanation
Indices: 10256965--10257022 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
10256955 AATATAATAT
*
10256965 AATATTTTAATAAAGA-TATTTAA
1 AATATATTAATAAAGACTATTTAA
* * *
10256988 AATATATTAATTAATACTTTTTAA
1 AATATATTAATAAAGACTATTTAA
10257012 AATATA-TAATA
1 AATATATTAATA
10257023 CTATTATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
23 17 0.59
24 12 0.41
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
AATATATTAATAAAGACTATTTAA
Found at i:10259086 original size:32 final size:36
Alignment explanation
Indices: 10259007--10259080 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 36
10258997 ATTTACTATA
*
10259007 TATATATTTTTTCTTAATATTATATTTTATACGTTTT
1 TATATATATTTTCTTAATATTATATTTTATA-GTTTT
*
10259044 TATATATATTTTCTTAATATTCTATTTT-T-GTTTT
1 TATATATATTTTCTTAATATTATATTTTATAGTTTT
10259078 TAT
1 TAT
10259081 TTATTTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 8 0.23
36 1 0.03
37 26 0.74
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (36 bp):
TATATATATTTTCTTAATATTATATTTTATAGTTTT
Found at i:10259359 original size:15 final size:14
Alignment explanation
Indices: 10259339--10259377 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
10259329 TAACATTTTA
10259339 TTTATTTTGTTTATT
1 TTTATTTT-TTTATT
10259354 TTTATTATTTTTATT
1 TTTATT-TTTTTATT
*
10259369 ATTATTTTT
1 TTTATTTTT
10259378 ACGTGTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 17 0.77
16 2 0.09
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTATTTTTTTATT
Found at i:10262452 original size:11 final size:12
Alignment explanation
Indices: 10262436--10262487 Score: 56
Period size: 11 Copynumber: 4.5 Consensus size: 12
10262426 AGATTCAATC
10262436 AGAAAAA-AAAG
1 AGAAAAACAAAG
*
10262447 AGAAAAA-AGAG
1 AGAAAAACAAAG
*
10262458 AAAAAAAGCAAAG
1 AGAAAAA-CAAAG
10262471 AGAAAAACAAAG
1 AGAAAAACAAAG
10262483 -GAAAA
1 AGAAAA
10262488 TTGATGAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
11 21 0.60
12 5 0.14
13 9 0.26
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (12 bp):
AGAAAAACAAAG
Found at i:10264196 original size:37 final size:37
Alignment explanation
Indices: 10264144--10264215 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
10264134 TAAAAAGAAG
* *
10264144 ATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAAA
1 ATTTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
* *
10264181 ATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 ATTTTATCTCCCTTGAGACAGTTTCCCTTGAAACA
10264216 TAAACATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ATTTTATCTCCCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:10264278 original size:36 final size:36
Alignment explanation
Indices: 10264231--10264456 Score: 218
Period size: 36 Copynumber: 6.4 Consensus size: 36
10264221 ATTGAAAACA
* *
10264231 TTTCCCTTGAAATAAATTTCGTCTCTCTTGAGACAG
1 TTTCCTTTGAAACAAATTTCGTCTCTCTTGAGACAG
* *
10264267 TTTCCTTTGAAATAAATTTTGTCTCTCTTGAGACAG
1 TTTCCTTTGAAACAAATTTCGTCTCTCTTGAGACAG
* * *
10264303 TTTCCCTTGAAACAAA-----T-TAT-TTGA-ATATG
1 TTTCCTTTGAAACAAATTTCGTCTCTCTTGAGACA-G
** * *
10264332 TTTTATTTGAAACAAATTTCATCTCCCTTGAGACAG
1 TTTCCTTTGAAACAAATTTCGTCTCTCTTGAGACAG
* * * *
10264368 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAG
1 TTTCCTTTGAAAC-AAATTTCGTCTCTCTTGAGACAG
10264405 TTT-CTCTTGAAACAAATTTCGTCTCTCTTGAGACAG
1 TTTCCT-TTGAAACAAATTTCGTCTCTCTTGAGACAG
*
10264441 TTTCCCTTGAAACAAA
1 TTTCCTTTGAAACAAA
10264457 ATCTTTGAAT
Statistics
Matches: 154, Mismatches: 24, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
28 2 0.01
29 18 0.12
30 2 0.01
31 1 0.01
34 1 0.01
35 1 0.01
36 98 0.64
37 31 0.20
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (36 bp):
TTTCCTTTGAAACAAATTTCGTCTCTCTTGAGACAG
Found at i:10264417 original size:102 final size:101
Alignment explanation
Indices: 10264144--10264422 Score: 335
Period size: 101 Copynumber: 2.8 Consensus size: 101
10264134 TAAAAAGAAG
* * * * * * *
10264144 ATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCT
1 ATTTCATCTCCCTTGAGACAGTTTCCTTTGGAACTAAATTTTGTCTCTCTTGAGACAGTTTCTCT
** * *
10264209 TGAAACATAAACATTGAAAACATTTCCCTTGAAATAA
66 TGAAACA-AATTATTGAAAACATTTCACTTGAAACAA
* * * *
10264246 ATTTCGTCTCTCTTGAGACAGTTTCCTTT-GAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCT
1 ATTTCATCTCCCTTGAGACAGTTTCCTTTGGAACTAAATTTTGTCTCTCTTGAGACAGTTTCTCT
* ** * *
10264310 TGAAACAAATTATTTGAATATGTTTTATTTGAAACAA
66 TGAAACAAATTA-TTGAAAACATTTCACTTGAAACAA
* *
10264347 ATTTCATCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCT
1 ATTTCATCTCCCTTGAGACAGTTTCCTTTGGAACTAAATTTTGTCTCTCTTGAGACAGTTTCTCT
10264412 TGAAACAAATT
66 TGAAACAAATT
10264423 TCGTCTCTCT
Statistics
Matches: 150, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
100 3 0.02
101 80 0.53
102 67 0.45
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (101 bp):
ATTTCATCTCCCTTGAGACAGTTTCCTTTGGAACTAAATTTTGTCTCTCTTGAGACAGTTTCTCT
TGAAACAAATTATTGAAAACATTTCACTTGAAACAA
Found at i:10264504 original size:138 final size:138
Alignment explanation
Indices: 10264251--10264510 Score: 378
Period size: 138 Copynumber: 1.9 Consensus size: 138
10264241 AATAAATTTC
* *
10264251 GTCTCTCTTGAGACAGTTTCCTTTGAAATAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 GTCTCTCTTGAGACAGTTTCCTTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAAC
* * * ** * *
10264316 AAATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTGGAAC
66 AAAATATTTGAATATATTTCACCTAAAACAAATTTCATCTCCCTTAAGACAGTTTCTTTTGGAAC
10264381 TAAGTTTT
131 TAAGTTTT
10264389 GTCTCTCTTGAGACAGTTT-CTCTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAA
1 GTCTCTCTTGAGACAGTTTCCT-TTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAA
* * * **
10264453 CAAAATCTTTGAATTTATTTCCCCTAAAACAAATTTTGTCTCCCTTAAGACAGTTTCT
65 CAAAATATTTGAATATATTTCACCTAAAACAAATTTCATCTCCCTTAAGACAGTTTCT
10264511 CTTGAAACAC
Statistics
Matches: 107, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
137 2 0.02
138 105 0.98
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.41
Consensus pattern (138 bp):
GTCTCTCTTGAGACAGTTTCCTTTGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAAC
AAAATATTTGAATATATTTCACCTAAAACAAATTTCATCTCCCTTAAGACAGTTTCTTTTGGAAC
TAAGTTTT
Done.