Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12862612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 47 of 56
Found at i:10705485 original size:33 final size:34
Alignment explanation
Indices: 10705448--10705516 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 34
10705438 CAAATAACAT
10705448 AATATAAATAATTACTA-AATAATATTTAAT-ATA
1 AATATAAATAA-TACTATAATAATATTTAATAATA
* * * *
10705481 AATATTACTAATCCTATTATAATATTTAATAATA
1 AATATAAATAATACTATAATAATATTTAATAATA
10705515 AA
1 AA
10705517 ACTATATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
32 4 0.13
33 21 0.70
34 5 0.17
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (34 bp):
AATATAAATAATACTATAATAATATTTAATAATA
Found at i:10705503 original size:26 final size:28
Alignment explanation
Indices: 10705446--10705505 Score: 81
Period size: 26 Copynumber: 2.2 Consensus size: 28
10705436 TACAAATAAC
10705446 ATAATATAAATAATTACTAAATAATATT
1 ATAATATAAATAATTACTAAATAATATT
**
10705474 -TAATATAAAT-ATTACT-AATCCTATT
1 ATAATATAAATAATTACTAAATAATATT
10705499 ATAATAT
1 ATAATAT
10705506 TTAATAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 7 0.24
26 12 0.41
27 10 0.34
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.42
Consensus pattern (28 bp):
ATAATATAAATAATTACTAAATAATATT
Found at i:10716412 original size:14 final size:14
Alignment explanation
Indices: 10716393--10716423 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
10716383 ATGCTAAGGA
10716393 AAGCAAATCTGTGC
1 AAGCAAATCTGTGC
10716407 AAGCAAATCTGTGC
1 AAGCAAATCTGTGC
10716421 AAG
1 AAG
10716424 TGTACATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (14 bp):
AAGCAAATCTGTGC
Found at i:10721906 original size:32 final size:32
Alignment explanation
Indices: 10721870--10721966 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 32
10721860 ATTGGGCCTG
* *
10721870 TAATAAAATTATAATAATTA-GTTATAATAATA
1 TAATAAAA-TATAATAATAACGTAATAATAATA
* *
10721902 TAATATAATATATTAATAACG---TAAT--TA
1 TAATAAAATATAATAATAACGTAATAATAATA
* * *
10721929 TAATATAATATACTAATAACGTAATTATAATA
1 TAATAAAATATAATAATAACGTAATAATAATA
10721961 TAATAA
1 TAATAA
10721967 TATAATTATA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
27 22 0.42
29 4 0.08
30 3 0.06
31 9 0.17
32 15 0.28
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (32 bp):
TAATAAAATATAATAATAACGTAATAATAATA
Found at i:10721972 original size:5 final size:5
Alignment explanation
Indices: 10721896--10721965 Score: 50
Period size: 5 Copynumber: 13.2 Consensus size: 5
10721886 ATTAGTTATA
* * * * *
10721896 ATAAT ATAAT ATAAT ATATT AATAAC GTAATT ATAAT ATAAT ATACT AATAAC
1 ATAAT ATAAT ATAAT ATAAT -ATAAT ATAA-T ATAAT ATAAT ATAAT -ATAAT
*
10721949 GTAATT ATAAT ATAAT A
1 ATAA-T ATAAT ATAAT A
10721966 ATATAATTAT
Statistics
Matches: 49, Mismatches: 12, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
5 37 0.76
6 12 0.24
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:10721972 original size:27 final size:27
Alignment explanation
Indices: 10721900--10721965 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 27
10721890 GTTATAATAA
*
10721900 TATAATATAATATATTAATAACGTAAT
1 TATAATATAATATACTAATAACGTAAT
10721927 TATAATATAATATACTAATAACGTAAT
1 TATAATATAATATACTAATAACGTAAT
10721954 TATAATATAATA
1 TATAATATAATA
10721966 ATATAATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (27 bp):
TATAATATAATATACTAATAACGTAAT
Found at i:10725034 original size:30 final size:28
Alignment explanation
Indices: 10724947--10725046 Score: 129
Period size: 28 Copynumber: 3.7 Consensus size: 28
10724937 TTTAAGTTAG
*
10724947 TATTTTTTT-TTAAAATAGTTAT-T--A
1 TATTTTTTTATTAAAATAATTATATAAA
* *
10724971 TA-TTTTATATTAATATAATTATATAAA
1 TATTTTTTTATTAAAATAATTATATAAA
10724998 TATTTTTTTATTAAAATAATTATATAAA
1 TATTTTTTTATTAAAATAATTATATAAA
10725026 TATTTTTTTTATTAAAATAAT
1 TA-TTTTTTTATTAAAATAAT
10725047 ATTTATATAA
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
23 5 0.08
24 13 0.20
25 1 0.02
27 3 0.05
28 25 0.38
29 18 0.28
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (28 bp):
TATTTTTTTATTAAAATAATTATATAAA
Found at i:10725246 original size:23 final size:25
Alignment explanation
Indices: 10725205--10725254 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 25
10725195 TTTTTTATAA
*
10725205 TTAATGTTAATATTTATTATTATTT
1 TTAATGTTAATATTTATTATGATTT
10725230 TTAAT-TTAA-ATTTATTATGATTT
1 TTAATGTTAATATTTATTATGATTT
10725253 TT
1 TT
10725255 TTATTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 15 0.62
24 4 0.17
25 5 0.21
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (25 bp):
TTAATGTTAATATTTATTATGATTT
Found at i:10725271 original size:24 final size:26
Alignment explanation
Indices: 10725217--10725271 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
10725207 AATGTTAATA
*
10725217 TTTATTATTATTTTTAATTTAAATTT
1 TTTATGATTATTTTTAATTTAAATTT
* *
10725243 ATTATGATT-TTTTT-ATTTTAATTT
1 TTTATGATTATTTTTAATTTAAATTT
10725267 TTTAT
1 TTTAT
10725272 AATGCATATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 13 0.52
25 5 0.20
26 7 0.28
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (26 bp):
TTTATGATTATTTTTAATTTAAATTT
Found at i:10726730 original size:26 final size:27
Alignment explanation
Indices: 10726673--10726724 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
10726663 ACCTAATATC
*
10726673 TATTTAAATGAATGTTTTTGTTTCTAA
1 TATTTAAATGAATGTTTATGTTTCTAA
10726700 TATTTAAATGTAAT-TTTAT-TTTCTA
1 TATTTAAATG-AATGTTTATGTTTCTA
10726725 TAATTTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 14 0.61
28 3 0.13
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.58
Consensus pattern (27 bp):
TATTTAAATGAATGTTTATGTTTCTAA
Found at i:10729101 original size:13 final size:13
Alignment explanation
Indices: 10729083--10729112 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
10729073 GGTATGATCG
10729083 ATACTGGCACTCT
1 ATACTGGCACTCT
10729096 ATACTGGCACTCT
1 ATACTGGCACTCT
10729109 ATAC
1 ATAC
10729113 AGTCAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (13 bp):
ATACTGGCACTCT
Found at i:10736657 original size:31 final size:30
Alignment explanation
Indices: 10736620--10736690 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 30
10736610 AACCATTTAT
* *
10736620 AATTTTCCAAAATTGTTGAATTGGTTCCCT-A
1 AATTTTCCAAAATTATAGAA-TGG-TCCCTAA
* *
10736651 ACTTTTCAAAAATTATAGAATGGTCCCTAA
1 AATTTTCCAAAATTATAGAATGGTCCCTAA
10736681 AATTTTCCAA
1 AATTTTCCAA
10736691 GACTTGTAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
29 5 0.15
30 12 0.36
31 16 0.48
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (30 bp):
AATTTTCCAAAATTATAGAATGGTCCCTAA
Found at i:10748438 original size:20 final size:20
Alignment explanation
Indices: 10748413--10748452 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
10748403 ATTATTTCCA
*
10748413 TATTTTAGATTAGTGAAATT
1 TATTTTAGATAAGTGAAATT
* *
10748433 TATTTTGGATAAGTGGAATT
1 TATTTTAGATAAGTGAAATT
10748453 GAAGTCATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (20 bp):
TATTTTAGATAAGTGAAATT
Found at i:10754927 original size:45 final size:45
Alignment explanation
Indices: 10754850--10755175 Score: 343
Period size: 45 Copynumber: 7.3 Consensus size: 45
10754840 CACTTTAAAT
* * * *
10754850 TATAACATA-TTTTCTATTGATAATGAATCCATATGCATTTCAAC
1 TATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
** * * *
10754894 TATAGTGTACCTTTCTATTGATAATGTACCCATATACATTTCAAC
1 TATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
* * * * *
10754939 CATAGTATAATGTTCTGTTGATAATGTACCCATATACATTTCAAC
1 TATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
* * * *
10754984 TCTAGCATGCTTTTCT-TTCATAATGCACCCATATGCATTTCAAC
1 TATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
* * *
10755028 TCTAGCATACATTTCTGTTGATAATGCACCCATATGCATTTCAAC
1 TATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
* * **
10755073 TCTAGCATACTTTTCTGTTGATAATGTACCTATATAAATTTCAA-
1 TATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
* * * *
10755117 TCATAGTATATTTTTCTGTTGATAGTGTACCTATATGCATTTCAAC
1 T-ATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
* *
10755163 TATGGCATCCTTT
1 TATAGCATACTTT
10755176 CATGCCAATA
Statistics
Matches: 238, Mismatches: 40, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
44 46 0.19
45 191 0.80
46 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (45 bp):
TATAGCATACTTTTCTGTTGATAATGTACCCATATGCATTTCAAC
Found at i:10755114 original size:134 final size:135
Alignment explanation
Indices: 10754855--10755170 Score: 379
Period size: 134 Copynumber: 2.4 Consensus size: 135
10754845 TAAATTATAA
* ** *
10754855 CATA-TTTTCTATTGATAATGAATCCATATGCATTTCAACTATAGTGTACCTTTCTATTGATAAT
1 CATACTTTTCTATTGATAATGAACCCATATGCATTTCAACTATAGCATACATTTCTATTGATAAT
* * *
10754919 GTACCCATATACATTTCAACCATAGTATAATGTTCTGTTGATAATGTACCCATATACATTTCAAC
66 GCACCCATATACATTTCAACCATAGCATAATGTTCTGTTGATAATGTACCCATATAAATTTCAA-
10754984 TC-TAG
130 TCATAG
* * * * *
10754989 CATGCTTTTCT-TTCATAATGCACCCATATGCATTTCAACTCTAGCATACATTTCTGTTGATAAT
1 CATACTTTTCTATTGATAATGAACCCATATGCATTTCAACTATAGCATACATTTCTATTGATAAT
* * * *
10755053 GCACCCATATGCATTTCAACTC-TAGCATACTTTTCTGTTGATAATGTACCTATATAAATTTCAA
66 GCACCCATATACATTTCAAC-CATAGCATAATGTTCTGTTGATAATGTACCCATATAAATTTCAA
10755117 TCATAG
130 TCATAG
* * * * * * *
10755123 TATATTTTTCTGTTGATAGTGTACCTATATGCATTTCAACTATGGCAT
1 CATACTTTTCTATTGATAATGAACCCATATGCATTTCAACTATAGCAT
10755171 CCTTTCATGC
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
133 2 0.01
134 114 0.75
135 37 0.24
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (135 bp):
CATACTTTTCTATTGATAATGAACCCATATGCATTTCAACTATAGCATACATTTCTATTGATAAT
GCACCCATATACATTTCAACCATAGCATAATGTTCTGTTGATAATGTACCCATATAAATTTCAAT
CATAG
Found at i:10763778 original size:17 final size:17
Alignment explanation
Indices: 10763756--10763789 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10763746 TCAAACCGGA
10763756 TAAAAAACCGGTTTTTT
1 TAAAAAACCGGTTTTTT
10763773 TAAAAAACCGGTTTTTT
1 TAAAAAACCGGTTTTTT
10763790 GCAAACCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
TAAAAAACCGGTTTTTT
Found at i:10764474 original size:2 final size:2
Alignment explanation
Indices: 10764467--10764491 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10764457 TTTACTCCAA
10764467 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10764492 AAGAGCGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10769573 original size:139 final size:137
Alignment explanation
Indices: 10769194--10769575 Score: 385
Period size: 139 Copynumber: 2.7 Consensus size: 137
10769184 ATAAAAGTCA
* * * *
10769194 TAATATTAAAATCTAGCCAATTTTATCAATTTATTGGATCAAATAATTAATATGGAACCTTGGGC
1 TAATATTAAAACCTAGCCAATTTTAGCAATTTATTGGATCGAATAATTAATATGGAA-CTTAGGC
* * * * * * ** ** *
10769259 ATAAAAGCGAGTATCAAATTAAAAATTCCCCTAAATGAAAGGAATAAGGTTCATTTAATTTAAAA
65 ATAAAA-CGAGAACCAAATTAAAATTTCACCTAAATTAAAGGAATAAGATGAAAATAATCTAAAA
*
10769324 TGAAGGCTT
129 TGAAGGCTC
* * * * *
10769333 TAATATGAAAACCAAACCAATTTTAG-AACTTTATTGGATCGAATAATTAATATGGAACTGCAGA
1 TAATATTAAAACCTAGCCAATTTTAGCAA-TTTATTGGATCGAATAATTAATATGGAACT-TAGG
* * * *
10769397 CATAAAA-GAAATGACCAAATTAAAAATTT-TCTTAAATTAAAGGAGTAAAGATGAAAATAATCT
64 CATAAAACGAGA--ACCAAATT-AAAATTTCACCTAAATTAAAGGAAT-AAGATGAAAATAATCT
10769460 AAAATGAAGGCTC
125 AAAATGAAGGCTC
* * * *
10769473 TAATATTAAAACCTAGTC-ATTTTAGCAAATTATTGGATCGAATAATTAATATAGAACATTAGGT
1 TAATATTAAAACCTAGCCAATTTTAGCAATTTATTGGATCGAATAATTAATATGGAAC-TTAGGC
10769537 ATTAAAACGAGAACCAAATTAAAATTTCACCTAAATTAA
65 A-TAAAACGAGAACCAAATTAAAATTTCACCTAAATTAA
10769576 CTAAGTTTAG
Statistics
Matches: 196, Mismatches: 36, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
137 2 0.01
138 11 0.06
139 130 0.66
140 50 0.26
141 3 0.02
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (137 bp):
TAATATTAAAACCTAGCCAATTTTAGCAATTTATTGGATCGAATAATTAATATGGAACTTAGGCA
TAAAACGAGAACCAAATTAAAATTTCACCTAAATTAAAGGAATAAGATGAAAATAATCTAAAATG
AAGGCTC
Found at i:10769869 original size:29 final size:29
Alignment explanation
Indices: 10769807--10769873 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
10769797 AAAAATGTAG
* *
10769807 AAAATT-AAATATTGAAATTTAAAGGACT
1 AAAATTAAAATATGGAAATTTAAAGGACA
* *
10769835 ATAATTAAAATAATGGAAA-TTAAAGGGCA
1 AAAATTAAAAT-ATGGAAATTTAAAGGACA
10769864 AAAATTAAAA
1 AAAATTAAAA
10769874 ATACTAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
28 5 0.16
29 21 0.66
30 6 0.19
ACGTcount: A:0.58, C:0.03, G:0.12, T:0.27
Consensus pattern (29 bp):
AAAATTAAAATATGGAAATTTAAAGGACA
Found at i:10774923 original size:45 final size:44
Alignment explanation
Indices: 10774863--10775101 Score: 325
Period size: 45 Copynumber: 5.3 Consensus size: 44
10774853 AATTATGCAT
* * *
10774863 CATTTCCATTTATGGCATCATTTCATGCCATTAATTCACTATTATG
1 CATTT-CATTTATGGCATCCTTTCATGCC-TTAATGCACCATTATG
* * * *
10774909 CATTTCATTTATGGCATCCTTTCAGGCCTTTAATACACCGTTAAG
1 CATTTCATTTATGGCATCCTTTCATGCC-TTAATGCACCATTATG
*
10774954 CATTTCATTTATGGCATCCTTTAATGCCTTCAATGCACCATTATG
1 CATTTCATTTATGGCATCCTTTCATGCCTT-AATGCACCATTATG
* *
10774999 CATTTCATTTATGGAATCCTTTCATGCCTTCAATGCACCGTTATG
1 CATTTCATTTATGGCATCCTTTCATGCCTT-AATGCACCATTATG
10775044 CATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCATTATG
1 CATTTCATTTATGGCATCCTTTCATGCC-TTAATGCACCATTATG
*
10775089 AATTTCATTTATG
1 CATTTCATTTATG
10775102 TAATGAAAAC
Statistics
Matches: 173, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
44 2 0.01
45 164 0.95
46 7 0.04
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.41
Consensus pattern (44 bp):
CATTTCATTTATGGCATCCTTTCATGCCTTAATGCACCATTATG
Found at i:10775481 original size:20 final size:20
Alignment explanation
Indices: 10775443--10775481 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10775433 TCTAGGCTCA
*
10775443 ATAGTATCGATACCCCTATC
1 ATAGTATCGATACCACTATC
*
10775463 ATAGTATCGATACTACTAT
1 ATAGTATCGATACCACTAT
10775482 ACTATGGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATAGTATCGATACCACTATC
Found at i:10781663 original size:45 final size:45
Alignment explanation
Indices: 10781606--10781888 Score: 397
Period size: 45 Copynumber: 6.3 Consensus size: 45
10781596 AATTATGCAT
* *
10781606 CATTTCCATTTATGGCATCATTTCATGCCTTTAATGCAACGTTATG
1 CATTT-CATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATG
* * *
10781652 CATTTCATTTATAGCATCATTTCATGCCTTTAATGCACCGTTATA
1 CATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATG
* * *
10781697 CATTTCATTTATGGTATCCTTTCATACCTTCAATGCACCGTTATG
1 CATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATG
*
10781742 CATTTCATTTATGGCATCCTTTCATGCCTTCAATGCACCGTTATG
1 CATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATG
* *
10781787 CATTTCATTTATGACATTCTTTCATGCCTTTAATGCACCGTTATG
1 CATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATG
* * ** * *
10781832 CATTTCATTTATGACAACCTTTCATATCTTTAATG-ACCATTATT
1 CATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATG
10781876 CATTTCATTTATG
1 CATTTCATTTATG
10781889 TAATGAAAAC
Statistics
Matches: 217, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
44 20 0.09
45 192 0.88
46 5 0.02
ACGTcount: A:0.24, C:0.23, G:0.10, T:0.43
Consensus pattern (45 bp):
CATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATG
Found at i:10786438 original size:19 final size:19
Alignment explanation
Indices: 10786414--10786458 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10786404 AGAAACTTTA
10786414 TTTTTTTTGAA-TATTGACT
1 TTTTTTTTGAATTATTGA-T
* *
10786433 TTTTTTGTGAATTTTTGAT
1 TTTTTTTTGAATTATTGAT
10786452 TTTTTTT
1 TTTTTTT
10786459 GGTACTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.16, C:0.02, G:0.11, T:0.71
Consensus pattern (19 bp):
TTTTTTTTGAATTATTGAT
Found at i:10786450 original size:20 final size:19
Alignment explanation
Indices: 10786414--10786459 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
10786404 AGAAACTTTA
10786414 TTTTTTT-TGAATATTGAC
1 TTTTTTTGTGAATATTGAC
* *
10786432 TTTTTTTGTGAATTTTTGAT
1 TTTTTTTGTGAA-TATTGAC
10786452 TTTTTTTG
1 TTTTTTTG
10786460 GTACTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 4 0.17
20 13 0.54
ACGTcount: A:0.15, C:0.02, G:0.13, T:0.70
Consensus pattern (19 bp):
TTTTTTTGTGAATATTGAC
Found at i:10791388 original size:859 final size:844
Alignment explanation
Indices: 10790044--10791703 Score: 2370
Period size: 859 Copynumber: 1.9 Consensus size: 844
10790034 CCTTTTTTAT
*
10790044 AGTAATGAATGTTTTAGGGACCCATATAATCTTAATTTTTTTTCATTTATAAAATTTAGGGGAAT
1 AGTAATGAATGTTTTAGGGACCCATATAATCTTAATATTTTTTCATTTATAAAATTTAGGGGAAT
* *
10790109 AAACATGTCTATTGTAAAAGCCATTTTTCACAAAATTTGATTTGGAGTAATATTCTCTTTCAAAT
66 AAACAGGTCTATTGTAAAAGCCATTTTTCACAAAATTTGATTTGGAGTAATACTCTCTTTCAAAT
*
10790174 ATATATTTGATAATTTTGTCAAAATTAGCTTTTTCTTTTTCAAGATATCAAATTTTATTTTGATA
131 ATATATTTGATAATTTTGTCAAAATTAGCTTTTTCTTTTCCAAGATATCAAATTTTATTTTGATA
* * * *
10790239 ATCCTCATGAACTTTGGAAAGAAAATTTTTCATGTCCAGATTCTTTTTCTCAAAATTATTTAATT
196 ATCCTCATGAACGTTGGAAAGAAAATTTTGCAAGTCCAGATTCTTTTACTCAAAATTATTTAATT
* *
10790304 TTTCGTACAAATCATTGACTTTGCTTTCAAGTTCACTATTAGCCTTAAAAAGTAACTCACTTATA
261 TTTCGTACAAACCATTGACTTTGCTTTCAAGTTCACTACTAGCCTTAAAAAGTAACTCACTTATA
*
10790369 ATTTTGAATGAATCTTTTTGTGTTTGAAATCATGACTTCATATTCTAACACTAATTCATCATAGG
326 ATTTTGAATGAATCTTTTTGTGTTTGAAATCATGACTTCACATTCTAACACTAATTCATCATAGG
* * * *
10790434 AATCTTGTAATTCATCAAATGTATATGAATTTGAAGTAGATGAGTTAGAGGATACCTTTGAATCT
391 AATCTTGCAATTCATCAAATATATATGAATTTGAAATAGATAAGTTAGAGGATACCTTTGAATCT
*
10790499 TCTTGGATGACCATGAGGCAAAGGTTGGCTACTTCATCATCTTCATCATTGGT-AGTGTCTTCTT
456 TCTTGGATGACCATGAGGCAAAGATTGGCTACTTCATCATCTTCATCATTGGTGA-TGTCTTCTT
*
10790563 CTCTCCATGTAGCCAAAAAAGCATTATTATTTGGCTTGCTTGA-CCATTTCTTCTTTAAATGAGG
520 CACTCCATGTAGCCAAAAAAGCATTATTATTTGGCTTGCTTGACCCA-TTCTTCTTTAAATGAGG
* * * * *
10790627 ACAATCATACTTAATGTATCCC-TTTTTTTGGCAGTTGTAACATATGATATGATCATTCTCCTTC
584 ACAATAATACTTAATGTATCCCATATTTTT--CAATTGTAACATATGATAGGATCATTCTCATTC
* * *
10790691 TTCTATTCATA-TTCCCTCTCTTTTTCTTTACATGACACAG-ATCGCTTGAATCTTTTAAAGA-G
647 TTCGATTCATACTT-CCTCTCTTTTTCTTTACATGACA-AGAATCACTCGAATCTTTTAAA-ATG
* *
10790753 CTTG-ACTATCTCTTCATTTTCTTTATCCACCTCTTAATTAGAATATTCTTTATCTTCATTGGTA
709 CTTGAAC-ATCTCTTCATTTTCTTTATCCACCTCTTAACTAGAATATTCTTTATATTCATTGGTA
* * *
10790817 GACTTTAAAGTAATGTCAATATCCTTTTCATTCTCCTCCTTCTTTCTCTCTTATTTTTCATATTT
773 GAATTTAAAGCAATGACAATATCCTTTTCATTCTCCTCCTTCTTTCTCTCTTATTTTTCATATTT
10790882 CTTTTGA
838 CTTTTGA
* * *
10790889 AGTAATGAGTGTTTTTGGGACCCATATACTCTTAATCATTTTTT-ATTTATAAAATTTAGGGGAA
1 AGTAATGAATGTTTTAGGGACCCATATAATCTTAAT-ATTTTTTCATTTATAAAATTTAGGGGAA
10790953 TAAACAGGTCTATTGTAAAAGCCATCCATTTTTCACAAAATTTGATTTGGAGTAAT-CTCATCTT
65 TAAACAGGTCTATTGTAAAAG----CCATTTTTCACAAAATTTGATTTGGAGTAATACTC-TCTT
* *
10791017 TCAAATTTAGT-TTTGATAATTTTGTCAAAATTAGTTTTTTCTTTTCCAAGATATC-AATTTTAT
125 TCAAATATA-TATTTGATAATTTTGTCAAAATTAGCTTTTTCTTTTCCAAGATATCAAATTTTAT
* * *
10791080 TTTGATGATCCTCATGAACGTTGGAAAGCAAATTTTGCAAGTCTAGATTCTTTTACTCAAAATTA
189 TTTGATAATCCTCATGAACGTTGGAAAGAAAATTTTGCAAGTCCAGATTCTTTTACTCAAAATTA
* ** * * *
10791145 TTTAATTTTTCTTGGAAACCATTGACTTTGCTTTCAAGTTCACTACTAGCCTTAGAGAGAGTCAT
254 TTTAATTTTTCGTACAAACCATTGACTTTGCTTTCAAGTTCACTACTAGCCTTA-A-AAAGTAAC
* * * *
10791210 TCAATTTTTAATTTTCAATTTTGAATGATTGTTTTTGTGTTTTGAAATTATGACTTCACATTCTA
317 TC-A--CTT-A---T-AATTTTGAATGAATCTTTTTGTG-TTTGAAATCATGACTTCACATTCTA
* *
10791275 ACACTAATTTATCATAGGCATCTTGCAATTCATCAAATATATATGAATTTGAAATAGATAAGTTA
373 ACACTAATTCATCATAGGAATCTTGCAATTCATCAAATATATATGAATTTGAAATAGATAAGTTA
* * *
10791340 GAGGATACCTTTGAATCTTCTTTGATGGCCATGAGGCAAAGATTGGCTACTTTATCATCTTCATC
438 GAGGATACCTTTGAATCTTCTTGGATGACCATGAGGCAAAGATTGGCTACTTCATCATCTTCATC
* * * *
10791405 ATTGGTGATGTCTTCTTCACTCCATGTAGCCACAAAAGCATTCTTCTTTGGCTTGTTTGACCCAT
503 ATTGGTGATGTCTTCTTCACTCCATGTAGCCAAAAAAGCATTATTATTTGGCTTGCTTGACCCAT
* * *
10791470 TCTTCTTTAAATGAGGATAATAATACTTAATGTGTCCCAATATTTTTCAATTGTAACATGTGATA
568 TCTTCTTTAAATGAGGACAATAATACTTAATGTATCCC-ATATTTTTCAATTGTAACATATGATA
* * * ** *
10791535 GGATCCTTGTCATTTTTCGATTCATACTTCCTCTCTTTTTCTTTGGATGACATGAATCACTCGAA
632 GGATCATTCTCATTCTTCGATTCATACTTCCTCTCTTTTTCTTTACATGACAAGAATCACTCGAA
* * *
10791600 TCTTTTAAAATGCTTGAACATCTCTTCATTTTCTTTATCCACCTTTTCACTAGAATCTTCTTTAT
697 TCTTTTAAAATGCTTGAACATCTCTTCATTTTCTTTATCCACCTCTTAACTAGAATATTCTTTAT
*
10791665 ATTCATTGGTAGAATTTAAAGCGATGACAATATCCTTTT
762 ATTCATTGGTAGAATTTAAAGCAATGACAATATCCTTTT
10791704 TTTTTTCTTC
Statistics
Matches: 719, Mismatches: 70, Indels: 38
0.87 0.08 0.05
Matches are distributed among these distances:
845 73 0.10
846 6 0.01
848 117 0.16
849 86 0.12
850 8 0.01
851 1 0.00
853 2 0.00
854 1 0.00
857 1 0.00
858 23 0.03
859 387 0.54
860 8 0.01
861 6 0.01
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (844 bp):
AGTAATGAATGTTTTAGGGACCCATATAATCTTAATATTTTTTCATTTATAAAATTTAGGGGAAT
AAACAGGTCTATTGTAAAAGCCATTTTTCACAAAATTTGATTTGGAGTAATACTCTCTTTCAAAT
ATATATTTGATAATTTTGTCAAAATTAGCTTTTTCTTTTCCAAGATATCAAATTTTATTTTGATA
ATCCTCATGAACGTTGGAAAGAAAATTTTGCAAGTCCAGATTCTTTTACTCAAAATTATTTAATT
TTTCGTACAAACCATTGACTTTGCTTTCAAGTTCACTACTAGCCTTAAAAAGTAACTCACTTATA
ATTTTGAATGAATCTTTTTGTGTTTGAAATCATGACTTCACATTCTAACACTAATTCATCATAGG
AATCTTGCAATTCATCAAATATATATGAATTTGAAATAGATAAGTTAGAGGATACCTTTGAATCT
TCTTGGATGACCATGAGGCAAAGATTGGCTACTTCATCATCTTCATCATTGGTGATGTCTTCTTC
ACTCCATGTAGCCAAAAAAGCATTATTATTTGGCTTGCTTGACCCATTCTTCTTTAAATGAGGAC
AATAATACTTAATGTATCCCATATTTTTCAATTGTAACATATGATAGGATCATTCTCATTCTTCG
ATTCATACTTCCTCTCTTTTTCTTTACATGACAAGAATCACTCGAATCTTTTAAAATGCTTGAAC
ATCTCTTCATTTTCTTTATCCACCTCTTAACTAGAATATTCTTTATATTCATTGGTAGAATTTAA
AGCAATGACAATATCCTTTTCATTCTCCTCCTTCTTTCTCTCTTATTTTTCATATTTCTTTTGA
Found at i:10791737 original size:20 final size:20
Alignment explanation
Indices: 10791709--10791746 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10791699 CTTTTTTTTT
*
10791709 TCTTCTTCTTCTTCTTTCTC
1 TCTTCTTCTTCTTATTTCTC
*
10791729 TCTTTTTCTTCTTATTTC
1 TCTTCTTCTTCTTATTTC
10791747 CCTTGAAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (20 bp):
TCTTCTTCTTCTTATTTCTC
Found at i:10795490 original size:9 final size:8
Alignment explanation
Indices: 10795468--10795493 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
10795458 ATTATAAATT
10795468 TTAAAAAA
1 TTAAAAAA
10795476 TTAAAAAA
1 TTAAAAAA
10795484 TTAAAAAA
1 TTAAAAAA
10795492 TT
1 TT
10795494 CATGTTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
TTAAAAAA
Found at i:10807475 original size:20 final size:20
Alignment explanation
Indices: 10807450--10807487 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10807440 ATGGAATTGA
*
10807450 ATGTTAGAATGTTGATTTTG
1 ATGTTAGAAGGTTGATTTTG
10807470 ATGTTAGAAGGTTGATTT
1 ATGTTAGAAGGTTGATTT
10807488 GGATCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (20 bp):
ATGTTAGAAGGTTGATTTTG
Found at i:10819357 original size:2 final size:2
Alignment explanation
Indices: 10819350--10819376 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10819340 TTAATACATG
10819350 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10819377 GTGTGTGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10819381 original size:2 final size:2
Alignment explanation
Indices: 10819376--10819410 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
10819366 TATATATATA
10819376 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
10819411 ATACATATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:10819533 original size:15 final size:15
Alignment explanation
Indices: 10819512--10819551 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
10819502 TTTAATGGTT
*
10819512 ATTTAATTCATAATA
1 ATTTAATTCAAAATA
*
10819527 TTTTAATTCAAAATA
1 ATTTAATTCAAAATA
*
10819542 ATTAAATTCA
1 ATTTAATTCA
10819552 GATTTAATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTTAATTCAAAATA
Found at i:10819573 original size:15 final size:15
Alignment explanation
Indices: 10819514--10819573 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
10819504 TAATGGTTAT
*
10819514 TTAATTCATAA-TATT
1 TTAATTCATAATTA-A
*
10819529 TTAATTCA-AAATAA
1 TTAATTCATAATTAA
* *
10819543 TTAAATTCAGATTTAA
1 TT-AATTCATAATTAA
10819559 TTAATTCATAATTAA
1 TTAATTCATAATTAA
10819574 AAAAACCCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
14 4 0.11
15 27 0.73
16 6 0.16
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.45
Consensus pattern (15 bp):
TTAATTCATAATTAA
Found at i:10821890 original size:15 final size:15
Alignment explanation
Indices: 10821870--10821900 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10821860 AGTCTGACTG
10821870 AAAGCTTCATATACT
1 AAAGCTTCATATACT
10821885 AAAGCTTCATATACT
1 AAAGCTTCATATACT
10821900 A
1 A
10821901 GGTGAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (15 bp):
AAAGCTTCATATACT
Found at i:10822299 original size:140 final size:138
Alignment explanation
Indices: 10821973--10822319 Score: 464
Period size: 140 Copynumber: 2.5 Consensus size: 138
10821963 AGGATTAAAC
* * * *
10821973 CTAAAATGAAGGCTCTAATATTAAAACCTAAA-CAATTTAGCAATTTATTGGATCAAATAATTAA
1 CTAAAATAAAGGCTATAATATTAAAACC-AAACCATTTTAGCAATTTATTGGATCGAATAATTAA
* * * *** * *
10822037 TATAGAACCTCGGGCATAAAAGTGAGGATCAAATTAAAAAGTCTTTTAAATTAAAGTATTAAAGT
65 TATGGAACATCGGGCATAAAAATGAGGATCAAATTAAAAAGTCCCCTAAATTAAAGAACTAAAGT
10822102 GAAATTAAT
130 GAAATTAAT
* * * *
10822111 CAAAAATAAAGGCTATACTATTAAAACCTAACCAATTTTAGCAATTTATTTGATCGAATAATTAA
1 CTAAAATAAAGGCTATAATATTAAAACCAAACC-ATTTTAGCAATTTATTGGATCGAATAATTAA
* *
10822176 TATGGAACATTGGGCATAAAAATGAGGATCAAATTGAAAAATTCCCCTAAATTAAAGAACTAAAG
65 TATGGAACATCGGGCATAAAAATGAGGATCAAATT-AAAAAGTCCCCTAAATTAAAGAACTAAAG
10822241 ATGAAATTAAT
129 -TGAAATTAAT
*
10822252 CTAAAATAAAGGCTTTAATATTAAAA-CAAAGCCATTTTAGCAATTTATTGGATCGAATAATTAA
1 CTAAAATAAAGGCTATAATATTAAAACCAAA-CCATTTTAGCAATTTATTGGATCGAATAATTAA
10822316 TATG
65 TATG
10822320 AAACCTTAGG
Statistics
Matches: 181, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
137 2 0.01
138 25 0.14
139 59 0.33
140 60 0.33
141 35 0.19
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.30
Consensus pattern (138 bp):
CTAAAATAAAGGCTATAATATTAAAACCAAACCATTTTAGCAATTTATTGGATCGAATAATTAAT
ATGGAACATCGGGCATAAAAATGAGGATCAAATTAAAAAGTCCCCTAAATTAAAGAACTAAAGTG
AAATTAAT
Found at i:10825288 original size:2 final size:2
Alignment explanation
Indices: 10825281--10825306 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10825271 TTTGTATCAT
10825281 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
10825307 ATGCTAGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10827526 original size:31 final size:31
Alignment explanation
Indices: 10827468--10827526 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
10827458 ATATTACTTT
*
10827468 TTAATTTGAGCTATAAAATTTATATAAATTA
1 TTAATTTGAGCTATAAAATTTAGATAAATTA
* *
10827499 TTAATTTGA-CTCATGAACTTTAGATAAA
1 TTAATTTGAGCT-ATAAAATTTAGATAAA
10827527 AAATCAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 2 0.08
31 22 0.92
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (31 bp):
TTAATTTGAGCTATAAAATTTAGATAAATTA
Found at i:10829628 original size:2 final size:2
Alignment explanation
Indices: 10829623--10829648 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10829613 ATTCCGTTAT
10829623 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
10829649 ACTTAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10831103 original size:21 final size:21
Alignment explanation
Indices: 10831078--10831121 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
10831068 AATTTAGTTA
10831078 ATTAGTTTGGTAGTATAAATT
1 ATTAGTTTGGTAGTATAAATT
* * *
10831099 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGGTAGTATAAATT
10831120 AT
1 AT
10831122 ATTATATTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (21 bp):
ATTAGTTTGGTAGTATAAATT
Found at i:10831131 original size:28 final size:30
Alignment explanation
Indices: 10831098--10831160 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 30
10831088 TAGTATAAAT
10831098 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
10831126 TATTAGTTTGTTAGTTTAAGTTATATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
10831156 TATTA
1 TATTA
10831161 TATAAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 20 0.61
29 1 0.03
30 12 0.36
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (30 bp):
TATTAGTTTGTTAGTTTAAGTTATATATTA
Found at i:10831935 original size:26 final size:25
Alignment explanation
Indices: 10831884--10831943 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
10831874 TATAATAAAT
10831884 AATTATTAATAATCATTACTAAATCA
1 AATTATTAATAATCATTAC-AAATCA
* *
10831910 TATTATTATTAAATCATTA-AATATCA
1 AATTATTAAT-AATCATTACAA-ATCA
10831936 AATTATTA
1 AATTATTA
10831944 GATTAATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 19 0.66
27 8 0.28
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.43
Consensus pattern (25 bp):
AATTATTAATAATCATTACAAATCA
Found at i:10834772 original size:15 final size:15
Alignment explanation
Indices: 10834752--10834790 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
10834742 AATGATTTAA
*
10834752 TAATGATTTTATTTT
1 TAATGATTTTATATT
10834767 TAATGATTTTATATT
1 TAATGATTTTATATT
*
10834782 TAATTATTT
1 TAATGATTT
10834791 AGTAATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (15 bp):
TAATGATTTTATATT
Found at i:10834860 original size:21 final size:22
Alignment explanation
Indices: 10834822--10834866 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
10834812 TGATTATTAA
*
10834822 TAATGATTTATTATTAAT-ATT
1 TAATGATTTATTACTAATGATT
10834843 TAATGATTTGA-TACTAATGATT
1 TAATGATTT-ATTACTAATGATT
10834865 TA
1 TA
10834867 GTAATGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (22 bp):
TAATGATTTATTACTAATGATT
Found at i:10834862 original size:14 final size:13
Alignment explanation
Indices: 10834843--10834916 Score: 55
Period size: 14 Copynumber: 5.6 Consensus size: 13
10834833 TATTAATATT
*
10834843 TAATGATTTGATAC
1 TAATGATTT-ATAA
*
10834857 TAATGA-TT-TAG
1 TAATGATTTATAA
10834868 TAATGA-TTAGTAA
1 TAATGATTTA-TAA
*
10834881 TAATGAAATTATAA
1 TAATG-ATTTATAA
*
10834895 TAATGATTTCATAC
1 TAATGATTT-ATAA
10834909 TAATGATT
1 TAATGATT
10834917 CTGTAATGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
11 10 0.20
13 12 0.24
14 26 0.51
15 3 0.06
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (13 bp):
TAATGATTTATAA
Found at i:10834973 original size:21 final size:23
Alignment explanation
Indices: 10834947--10834988 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
10834937 ATAATAATGA
10834947 TTAT-AATA-GTCGAATTTATCT
1 TTATAAATATGTCGAATTTATCT
10834968 TTATAAATATGTCGAATTTAT
1 TTATAAATATGTCGAATTTAT
10834989 TTTTTTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 4 0.21
23 11 0.58
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.48
Consensus pattern (23 bp):
TTATAAATATGTCGAATTTATCT
Found at i:10835180 original size:14 final size:14
Alignment explanation
Indices: 10835135--10835171 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
10835125 TATTAATATT
10835135 TAATGATTTGATAG
1 TAATGATTTGATAG
10835149 TAATGATTTGATAG
1 TAATGATTTGATAG
10835163 TAATGATTT
1 TAATGATTT
10835172 ATTAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (14 bp):
TAATGATTTGATAG
Found at i:10835187 original size:21 final size:20
Alignment explanation
Indices: 10835163--10835401 Score: 104
Period size: 21 Copynumber: 11.8 Consensus size: 20
10835153 GATTTGATAG
*
10835163 TAATGATTTATTAATAATATT
1 TAAT-ATTTATTAGTAATATT
10835184 TAATTATTTGA-TAGTAATGATT
1 TAA-TATTT-ATTAGTAAT-ATT
* * * *
10835206 TAGTAATGATTAGTAATAAT
1 TAATATTTATTAGTAATATT
*
10835226 TAA-A-TTATTATTAATATT
1 TAATATTTATTAGTAATATT
*
10835244 TAATGATTTGA-TATTAATGATT
1 TAAT-ATTT-ATTAGTAAT-ATT
* * *
10835266 TAATAATGATTAGTAATA-A
1 TAATATTTATTAGTAATATT
*
10835285 T-A-ATTTATTATTAATATT
1 TAATATTTATTAGTAATATT
*
10835303 TAATGATTTGA-TAATAATGATT
1 TAAT-ATTT-ATTAGTAAT-ATT
* * *
10835325 TAATAATGATTAGTAATA-A
1 TAATATTTATTAGTAATATT
* *
10835344 TAA-AATTATTATTAATATT
1 TAATATTTATTAGTAATATT
10835363 TAATTATTTGA-TAGTAATGATT
1 TAA-TATTT-ATTAGTAAT-ATT
* * *
10835385 TAGTAATGATTAGTAAT
1 TAATATTTATTAGTAAT
10835402 GATGAAATTA
Statistics
Matches: 165, Mismatches: 30, Indels: 46
0.68 0.12 0.19
Matches are distributed among these distances:
17 11 0.07
18 28 0.17
19 9 0.05
20 11 0.07
21 77 0.47
22 29 0.18
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (20 bp):
TAATATTTATTAGTAATATT
Found at i:10835234 original size:60 final size:60
Alignment explanation
Indices: 10835170--10835458 Score: 389
Period size: 60 Copynumber: 5.0 Consensus size: 60
10835160 TAGTAATGAT
* * *
10835170 TTATTAATAATATTTAATTATTTGATAGTAATGATTTAGTAATGATTAGTAATAATTAAA
1 TTATTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATTAAA
* *
10835230 TTATTATTAATATTTAATGATTTGATATTAATGATTTAATAATGATTAGTAATAA-TAAT
1 TTATTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATTAAA
* *
10835289 TTATTATTAATATTTAATGATTTGATAATAATGATTTAATAATGATTAGTAATAATAAAA
1 TTATTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATTAAA
* * * *
10835349 TTATTATTAATATTTAATTATTTGATAGTAATGATTTAGTAATGATTAGTAATGA-TGAA
1 TTATTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATTAAA
* * *
10835408 --ATTA-T-A-A--TAATGATTTGATACTAATGATTTAATAATTATTATTAATAATTA
1 TTATTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATTA
10835459 TGGAATAATA
Statistics
Matches: 206, Mismatches: 21, Indels: 11
0.87 0.09 0.05
Matches are distributed among these distances:
52 35 0.17
53 1 0.00
54 1 0.00
55 1 0.00
56 1 0.00
57 4 0.02
59 59 0.29
60 104 0.50
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.47
Consensus pattern (60 bp):
TTATTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATTAAA
Found at i:10835274 original size:11 final size:11
Alignment explanation
Indices: 10835244--10835335 Score: 55
Period size: 11 Copynumber: 7.7 Consensus size: 11
10835234 TATTAATATT
10835244 TAATGATTTGATA
1 TAATGATTT-A-A
10835257 TTAATGATTTAA
1 -TAATGATTTAA
10835269 TAATGATTAGTAA
1 TAATGATT--TAA
*
10835282 TAATAATTTATTA
1 TAATGATTTA--A
10835295 TTAAT-ATTTAA
1 -TAATGATTTAA
*
10835306 TGAT--TTGATAA
1 TAATGATT--TAA
10835317 TAATGATTTAA
1 TAATGATTTAA
10835328 TAATGATT
1 TAATGATT
10835336 AGTAATAATA
Statistics
Matches: 66, Mismatches: 3, Indels: 21
0.73 0.03 0.23
Matches are distributed among these distances:
9 2 0.03
10 3 0.05
11 28 0.42
12 1 0.02
13 19 0.29
14 13 0.20
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (11 bp):
TAATGATTTAA
Found at i:10835321 original size:119 final size:112
Alignment explanation
Indices: 10835124--10835458 Score: 407
Period size: 119 Copynumber: 3.0 Consensus size: 112
10835114 GTTAATTAGT
*
10835124 TTATTAATATTTAATGATTTGATAGTAATGATTTGATAGTAATGATT--TATTAAT-AATATT-T
1 TTATTAATATTTAATGATTTGATAGTAATGATTT-A-A-TAATGATTAGTAATAATGAA-ATTAT
* *
10835185 AAT--T-ATTTGATAGTAATGATTTAGTAATGATTAGTAATAATTAAATTA
62 AATAATGATTTGATAATAATGATTTAATAATGATTAGTAATAATTAAATTA
*
10835233 TTATTAATATTTAATGATTTGATATTAATGATTTAATAATGATTAGTAATAAT-AATTTATTATT
1 TTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATGAA---ATTA-T
*
10835297 AATATTTAATGATTTGATAATAATGATTTAATAATGATTAGTAATAATAAAATTA
62 -A-A--TAATGATTTGATAATAATGATTTAATAATGATTAGTAATAATTAAATTA
* * *
10835352 TTATTAATATTTAATTATTTGATAGTAATGATTTAGTAATGATTAGTAATGATGAAATTATAATA
1 TTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATGAAATTATAATA
* * *
10835417 ATGATTTGATACTAATGATTTAATAATTATTATTAATAATTA
66 ATGATTTGATAATAATGATTTAATAATGATTAGTAATAATTA
10835459 TGGAATAATA
Statistics
Matches: 199, Mismatches: 13, Indels: 25
0.84 0.05 0.11
Matches are distributed among these distances:
106 8 0.04
107 1 0.01
108 9 0.05
109 33 0.17
110 4 0.02
112 41 0.21
113 1 0.01
114 2 0.01
115 1 0.01
116 2 0.01
117 4 0.02
118 1 0.01
119 90 0.45
120 2 0.01
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.47
Consensus pattern (112 bp):
TTATTAATATTTAATGATTTGATAGTAATGATTTAATAATGATTAGTAATAATGAAATTATAATA
ATGATTTGATAATAATGATTTAATAATGATTAGTAATAATTAAATTA
Found at i:10835322 original size:14 final size:14
Alignment explanation
Indices: 10835244--10835456 Score: 64
Period size: 14 Copynumber: 15.1 Consensus size: 14
10835234 TATTAATATT
* *
10835244 TAATGATTTGATAT
1 TAATGATTTAATAA
10835258 TAATGATTTAATAA
1 TAATGATTTAATAA
* * *
10835272 TGATTA-GTAATAA
1 TAATGATTTAATAA
* *
10835285 TAATTTATTATTAATATT
1 TAA-TGA-T-TTAATA-A
*
10835303 TAATGATTTGATAA
1 TAATGATTTAATAA
10835317 TAATGATTTAATAA
1 TAATGATTTAATAA
* * *
10835331 TGATTA-GTAATAA
1 TAATGATTTAATAA
* *
10835344 TAAAATTATTATTAATATT
1 T--AATGA-T-TTAATA-A
* * *
10835363 TAATTATTTGATAG
1 TAATGATTTAATAA
*
10835377 TAATGA-TT--TAG
1 TAATGATTTAATAA
*
10835388 TAATGA-TTAGTAA
1 TAATGATTTAATAA
* *
10835401 TGATGAAATT-ATAA
1 TAATG-ATTTAATAA
* *
10835415 TAATGATTTGATAC
1 TAATGATTTAATAA
10835429 TAATGATTTAATAA
1 TAATGATTTAATAA
* *
10835443 TTATTA-TTAATAA
1 TAATGATTTAATAA
10835456 T
1 T
10835457 TATGGAATAA
Statistics
Matches: 152, Mismatches: 31, Indels: 33
0.70 0.14 0.15
Matches are distributed among these distances:
11 11 0.07
13 34 0.22
14 68 0.45
15 16 0.11
16 2 0.01
17 12 0.08
18 8 0.05
19 1 0.01
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:10835390 original size:11 final size:11
Alignment explanation
Indices: 10835374--10835404 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
10835364 AATTATTTGA
10835374 TAGTAATGATT
1 TAGTAATGATT
10835385 TAGTAATGA-T
1 TAGTAATGATT
10835395 TAGTAATGAT
1 TAGTAATGAT
10835405 GAAATTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (11 bp):
TAGTAATGATT
Found at i:10835453 original size:21 final size:21
Alignment explanation
Indices: 10835429--10835493 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
10835419 GATTTGATAC
10835429 TAATGATTTAATAATTATTAT
1 TAATGATTTAATAATTATTAT
* *
10835450 TAATAATTATGGAATAATAATT-T
1 TAATGATT-T--AATAATTATTAT
*
10835473 TAATGATTTGATAAATTATTA
1 TAATGATTTAAT-AATTATTA
10835494 GATCTTCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 2 0.06
23 8 0.24
24 9 0.26
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.48
Consensus pattern (21 bp):
TAATGATTTAATAATTATTAT
Found at i:10836023 original size:13 final size:11
Alignment explanation
Indices: 10835947--10836147 Score: 83
Period size: 11 Copynumber: 17.1 Consensus size: 11
10835937 TGATATGATT
*
10835947 TGATTTAGTAA
1 TGATTTAATAA
10835958 TGATTTGATAATAA
1 TGA-TT--TAATAA
*
10835972 TGATTTAATATT
1 TGATTTAATA-A
*
10835984 TAAATTATAATAA
1 T-GATT-TAATAA
*
10835997 TGATTTAGTAA
1 TGATTTAATAA
10836008 TGATTCCTAATAA
1 TGATT--TAATAA
* *
10836021 TGATTTATTAT
1 TGATTTAATAA
*
10836032 TAATATT--TAA
1 TGAT-TTAATAA
10836042 TGATTTGATATTAA
1 TGATTT-A-A-TAA
10836056 TGA-TTAAGTAA
1 TGATTTAA-TAA
10836067 TGATTAGTAATAA
1 TGATT--TAATAA
10836080 TGAAATTATAATAA
1 TG--ATT-TAATAA
10836094 TGA-TT--TAA
1 TGATTTAATAA
*
10836102 TCA-TTAATAA
1 TGATTTAATAA
*
10836112 TAATTTAATAA
1 TGATTTAATAA
10836123 TGATTAATAATAA
1 TGATT--TAATAA
*
10836136 TTATTTAATAA
1 TGATTTAATAA
10836147 T
1 T
10836148 TATTAAATAT
Statistics
Matches: 148, Mismatches: 18, Indels: 48
0.69 0.08 0.22
Matches are distributed among these distances:
8 7 0.05
9 2 0.01
10 11 0.07
11 51 0.34
12 11 0.07
13 33 0.22
14 30 0.20
15 3 0.02
ACGTcount: A:0.44, C:0.01, G:0.09, T:0.45
Consensus pattern (11 bp):
TGATTTAATAA
Found at i:10836042 original size:24 final size:24
Alignment explanation
Indices: 10835966--10836158 Score: 105
Period size: 24 Copynumber: 7.8 Consensus size: 24
10835956 AATGATTTGA
10835966 TAATAATGATTTAATATTTAA-ATT
1 TAATAATGATTTAATA-TTAATATT
* * * *
10835990 ATAATAATGATTTAGTAATGAT-TCC
1 -TAATAATGATTTAATATTAATAT-T
*
10836015 TAATAATGATTTATTATTAATA-T
1 TAATAATGATTTAATATTAATATT
*
10836038 T--TAATGATTTGATATTAATGA-T
1 TAATAATGATTTAATATTAAT-ATT
*
10836060 TAAGTAATGATTAGTAATAATGAA-ATT
1 TAA-TAATGATT--TAAT-ATTAATATT
10836087 ATAATAATGATTTAATCATTAATAATAATT
1 -TAATAATGATTTAAT-A-T--TAAT-ATT
*
10836117 TAATAATGA-TTAATAATAATTATT
1 TAATAATGATTTAATATTAA-TATT
* *
10836141 TAATAATTATTAAATATT
1 TAATAATGATTTAATATT
10836159 TAAATAGAAT
Statistics
Matches: 131, Mismatches: 18, Indels: 38
0.70 0.10 0.20
Matches are distributed among these distances:
21 16 0.12
22 3 0.02
23 1 0.01
24 35 0.27
25 35 0.27
26 2 0.02
27 13 0.10
28 14 0.11
29 9 0.07
30 3 0.02
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (24 bp):
TAATAATGATTTAATATTAATATT
Found at i:10836113 original size:21 final size:20
Alignment explanation
Indices: 10836083--10836161 Score: 67
Period size: 21 Copynumber: 4.0 Consensus size: 20
10836073 GTAATAATGA
10836083 AATT-ATAATAATGATTTAAT
1 AATTAATAATAAT-ATTTAAT
*
10836103 CATTAATAATAAT-TTAATAAT
1 AATTAATAATAATATT--TAAT
*
10836124 GATTAATAATAATTATTTAAT
1 AATTAATAATAA-TATTTAAT
*
10836145 AATT-ATTA-AATATTTAA
1 AATTAATAATAATATTTAA
10836162 ATAGAATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
18 7 0.14
19 4 0.08
20 6 0.12
21 30 0.60
22 1 0.02
23 2 0.04
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.46
Consensus pattern (20 bp):
AATTAATAATAATATTTAAT
Found at i:10836148 original size:11 final size:11
Alignment explanation
Indices: 10836105--10836156 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
10836095 GATTTAATCA
*
10836105 TTAATAATAAT
1 TTAATAATTAT
*
10836116 TTAATAATGAT
1 TTAATAATTAT
10836127 TAATAATAATTAT
1 T--TAATAATTAT
10836140 TTAATAATTAT
1 TTAATAATTAT
*
10836151 TAAATA
1 TTAATA
10836157 TTTAAATAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
11 26 0.72
13 10 0.28
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (11 bp):
TTAATAATTAT
Found at i:10838820 original size:34 final size:36
Alignment explanation
Indices: 10838750--10838820 Score: 83
Period size: 38 Copynumber: 2.0 Consensus size: 36
10838740 ATAACTAATG
**
10838750 ACTAACAAACAAACTAATTAATTATTTTTTAATATATA
1 ACTAACAAACAAACTAATTAA-TATAATTT-ATATATA
*
10838788 ACTATCAAACAAACTAATTAA-ATAATTT-TATAT
1 ACTAACAAACAAACTAATTAATATAATTTATATAT
10838821 TTATGTATGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
34 5 0.17
36 5 0.17
38 20 0.67
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (36 bp):
ACTAACAAACAAACTAATTAATATAATTTATATATA
Found at i:10838883 original size:21 final size:21
Alignment explanation
Indices: 10838830--10838869 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
10838820 TTTATGTATG
10838830 ATATAACTTAAACTAACAATA
1 ATATAACTTAAACTAACAATA
10838851 ATATAACTTAAACTAACAA
1 ATATAACTTAAACTAACAA
10838870 ACTAATTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (21 bp):
ATATAACTTAAACTAACAATA
Found at i:10839017 original size:15 final size:15
Alignment explanation
Indices: 10838989--10839027 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
10838979 TCCCTTTCTT
*
10838989 TTTC-CTCTTTTCCC
1 TTTCTCTCTTCTCCC
10839003 TTTCTCTCTTCTCCC
1 TTTCTCTCTTCTCCC
*
10839018 TTTCTTTCTT
1 TTTCTCTCTT
10839028 TTATGATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTCTCTCTTCTCCC
Found at i:10839317 original size:29 final size:28
Alignment explanation
Indices: 10839246--10839327 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 28
10839236 AGCATGCATT
10839246 GGTCGCTGGGAC-TGCATGGCGACCTATA
1 GGTCGCTGGG-CGTGCATGGCGACCTATA
* * *
10839274 GGTC-ATGGGGAGTGCATGGCGACCTGGTA
1 GGTCGCT-GGGCGTGCATGGCGACCT-ATA
10839303 GGTCGCTGGGCGTGCATGGCGACCT
1 GGTCGCTGGGCGTGCATGGCGACCT
10839328 CTTCCAACGA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
27 1 0.02
28 20 0.44
29 23 0.51
30 1 0.02
ACGTcount: A:0.15, C:0.23, G:0.41, T:0.21
Consensus pattern (28 bp):
GGTCGCTGGGCGTGCATGGCGACCTATA
Found at i:10839385 original size:28 final size:28
Alignment explanation
Indices: 10839345--10839402 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
10839335 CGACATGCAC
*
10839345 GGCGCATGCAAAGCACCACAGCTCGCAT
1 GGCGCATGCAAAGCACCACAACTCGCAT
* *
10839373 GGCGCATGTAAAGTACCACAACTCGCAT
1 GGCGCATGCAAAGCACCACAACTCGCAT
10839401 GG
1 GG
10839403 ATGCCCTGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.14
Consensus pattern (28 bp):
GGCGCATGCAAAGCACCACAACTCGCAT
Found at i:10839839 original size:16 final size:16
Alignment explanation
Indices: 10839820--10839871 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
10839810 AATTAAACCG
10839820 AACCAAAAGCAACCTA
1 AACCAAAAGCAACCTA
**
10839836 AACCAAAATTAACCTA
1 AACCAAAAGCAACCTA
*
10839852 AACCAAAAGCAACCTG
1 AACCAAAAGCAACCTA
10839868 AACC
1 AACC
10839872 GAAATTTGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.54, C:0.31, G:0.06, T:0.10
Consensus pattern (16 bp):
AACCAAAAGCAACCTA
Found at i:10840320 original size:54 final size:51
Alignment explanation
Indices: 10840218--10840354 Score: 154
Period size: 51 Copynumber: 2.6 Consensus size: 51
10840208 ATCTTACTTG
*
10840218 AAATAAA-AATATTGGATTTATAATAAAAATAATATAAAACAACTAAAAC-
1 AAATAAATAATATTAGATTTATAATAAAAATAATATAAAACAACTAAAACT
*
10840267 AAATGAAATAATATTAGATTTATAATAAAAATAATATAAAGTTACGACTAAAACT
1 AAAT-AAATAATATTAGATTTATAATAAAAATAATATAAA---ACAACTAAAACT
* * *
10840322 TAACAAATAA-AGTTATATATTATAATAAAAATA
1 AAATAAATAATA-TTAGAT-TTATAATAAAAATA
10840355 TTAAATTTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
49 4 0.05
50 3 0.04
51 30 0.40
53 1 0.01
54 21 0.28
55 16 0.21
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (51 bp):
AAATAAATAATATTAGATTTATAATAAAAATAATATAAAACAACTAAAACT
Found at i:10840711 original size:32 final size:31
Alignment explanation
Indices: 10840660--10840720 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
10840650 GATCTAATGA
* *
10840660 AAATCAACCGATCTGATATTGACCAGACCTG
1 AAATCAACCGATCTAATATTAACCAGACCTG
* *
10840691 AAATCTAACCTATCTAATATTAACCCGACC
1 AAATC-AACCGATCTAATATTAACCAGACC
10840721 CAAAAATCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 5 0.20
32 20 0.80
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.25
Consensus pattern (31 bp):
AAATCAACCGATCTAATATTAACCAGACCTG
Found at i:10840743 original size:32 final size:32
Alignment explanation
Indices: 10840707--10840791 Score: 89
Period size: 32 Copynumber: 2.6 Consensus size: 32
10840697 AACCTATCTA
* * *
10840707 ATATTAACCCGACCCAAAAATCAACGGACCTG
1 ATATTAACCCGAACCAAAAATCAACCGACATG
* * * *
10840739 ATATTGACCTGATCCAAAAATCAACCGATATG
1 ATATTAACCCGAACCAAAAATCAACCGACATG
*
10840771 ATATTAATCCGAACCAGAAAA
1 ATATTAACCCGAACCA-AAAA
10840792 CAATCGATCC
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
32 38 0.90
33 4 0.10
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.20
Consensus pattern (32 bp):
ATATTAACCCGAACCAAAAATCAACCGACATG
Found at i:10840775 original size:64 final size:65
Alignment explanation
Indices: 10840658--10840791 Score: 155
Period size: 64 Copynumber: 2.1 Consensus size: 65
10840648 TTGATCTAAT
* ** * * *
10840658 GAAAATCAACCGATCTGATATTGACCAGACCTGAAATCTAACCTATCTAATATTAACCCGACCCA
1 GAAAATCAACCGACCTGATATTGACCAGACCAAAAATCTAACCGATATAATATTAACCCGAACCA
* * * *
10840723 -AAAATCAACGGACCTGATATTGACCTGATCCAAAAATC-AACCGATATGATATTAATCCGAACC
1 GAAAATCAACCGACCTGATATTGACCAGA-CCAAAAATCTAACCGATATAATATTAACCCGAACC
10840786 A
65 A
10840787 GAAAA
1 GAAAA
10840792 CAATCGATCC
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
64 46 0.81
65 11 0.19
ACGTcount: A:0.42, C:0.25, G:0.12, T:0.22
Consensus pattern (65 bp):
GAAAATCAACCGACCTGATATTGACCAGACCAAAAATCTAACCGATATAATATTAACCCGAACCA
Found at i:10842379 original size:2 final size:2
Alignment explanation
Indices: 10842330--10842360 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10842320 TATTAATGAT
10842330 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10842361 GAAAAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10844513 original size:55 final size:54
Alignment explanation
Indices: 10844429--10844574 Score: 202
Period size: 55 Copynumber: 2.6 Consensus size: 54
10844419 CATAAATGGA
* * *
10844429 TGTACCGATACACTCTTGGATGTATCGATACACCCCCTACATCGAATGTATTTTG
1 TGTACCGATACACTCTT-GATGTACCGATACACCCCCTACATCAAATGCATTTTG
*
10844484 TGTACCGATACACTCTTGTATGTACCGATACACTCCCTACATCAAATGCATTTTG
1 TGTACCGATACACTCTTG-ATGTACCGATACACCCCCTACATCAAATGCATTTTG
** *
10844539 TGTATTGATACACTGGTTGATGTACCGATACACCCC
1 TGTACCGATACACT-CTTGATGTACCGATACACCCC
10844575 TGGCTCCGAG
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
54 1 0.01
55 77 0.95
56 3 0.04
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (54 bp):
TGTACCGATACACTCTTGATGTACCGATACACCCCCTACATCAAATGCATTTTG
Found at i:10846932 original size:16 final size:16
Alignment explanation
Indices: 10846911--10846954 Score: 88
Period size: 16 Copynumber: 2.8 Consensus size: 16
10846901 GATAATTTCT
10846911 TAAATTTATATTTTAG
1 TAAATTTATATTTTAG
10846927 TAAATTTATATTTTAG
1 TAAATTTATATTTTAG
10846943 TAAATTTATATT
1 TAAATTTATATT
10846955 ATTAATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (16 bp):
TAAATTTATATTTTAG
Found at i:10849728 original size:19 final size:19
Alignment explanation
Indices: 10849706--10849750 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
10849696 AAAAAGATTG
10849706 GGTTGTATATAACATTATA
1 GGTTGTATATAACATTATA
10849725 GGTTGTATATAACATTATA
1 GGTTGTATATAACATTATA
10849744 GGTTGTA
1 GGTTGTA
10849751 CATCATCGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.42
Consensus pattern (19 bp):
GGTTGTATATAACATTATA
Found at i:10851965 original size:100 final size:101
Alignment explanation
Indices: 10851835--10852022 Score: 342
Period size: 100 Copynumber: 1.9 Consensus size: 101
10851825 GAGATGATTT
10851835 TACCGGACTAGCTCGGGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGAATGGTAGTGTGA
1 TACCGGACTAGCTCGGGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGAATGGTAGTGTGA
10851900 TGAGATGACTCCCCTTGAAGTATGCTAAAAAAACTC
66 TGAGATGACTCCCCTTGAAGTATGCTAAAAAAACTC
* * *
10851936 TACCTGACTAGCTC-GGGGTTGAAGGTATGCTCCCTTTCACTTAGAGTGTGGGATGGTAGTGTGA
1 TACCGGACTAGCTCGGGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGAATGGTAGTGTGA
10852000 TGAGATGACTCCCCTTGAAGTAT
66 TGAGATGACTCCCCTTGAAGTAT
10852023 AAAAAATGGA
Statistics
Matches: 84, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
100 71 0.85
101 13 0.15
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (101 bp):
TACCGGACTAGCTCGGGGGTGGAAGGTATGCTCCCTTTCACTTAGAGTGTGGAATGGTAGTGTGA
TGAGATGACTCCCCTTGAAGTATGCTAAAAAAACTC
Found at i:10859860 original size:2 final size:2
Alignment explanation
Indices: 10859853--10859894 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
10859843 ACTATAGATA
10859853 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10859895 GAAAATAACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10860293 original size:24 final size:23
Alignment explanation
Indices: 10860266--10860319 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
10860256 TTGAACGTTT
*
10860266 ATGTCCTTCATTATTCCAAAAATC
1 ATGTCCTT-ATCATTCCAAAAATC
10860290 ATGTCCCTTATCATTCCAAAAATC
1 ATGT-CCTTATCATTCCAAAAATC
10860314 ATGTCC
1 ATGTCC
10860320 CTTTGTCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 2 0.07
24 22 0.79
25 4 0.14
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (23 bp):
ATGTCCTTATCATTCCAAAAATC
Found at i:10864381 original size:2 final size:2
Alignment explanation
Indices: 10864374--10864407 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10864364 ATTATAGATA
10864374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10864408 GAAAATAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10868471 original size:23 final size:18
Alignment explanation
Indices: 10868426--10868462 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
10868416 AAGGTATTGG
10868426 TACAATAGGTAATACCTC
1 TACAATAGGTAATACCTC
*
10868444 TACAATAGGTAATATCTC
1 TACAATAGGTAATACCTC
10868462 T
1 T
10868463 TCCATACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (18 bp):
TACAATAGGTAATACCTC
Found at i:10872306 original size:12 final size:12
Alignment explanation
Indices: 10872273--10872298 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10872263 TAGTCGTCAA
10872273 CCAAATCCTCCT
1 CCAAATCCTCCT
10872285 CCAAATCCTCCT
1 CCAAATCCTCCT
10872297 CC
1 CC
10872299 TATTCCTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.54, G:0.00, T:0.23
Consensus pattern (12 bp):
CCAAATCCTCCT
Found at i:10876830 original size:2 final size:2
Alignment explanation
Indices: 10876823--10876922 Score: 200
Period size: 2 Copynumber: 50.0 Consensus size: 2
10876813 TTATGTTGTC
10876823 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10876865 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10876907 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
10876923 TAAACAAACC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 98 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10884620 original size:81 final size:80
Alignment explanation
Indices: 10884464--10884620 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 80
10884454 CTCCTATTCA
* * *
10884464 AACTATAAGTAAAACTATTTTACTTTAGTTGAAACACTAATGCTTGAGTCCTATTCAAACAAAGA
1 AACTACAAGTAAAACTATTTTACATTAGTTGAAACACCAATGCTTGAGTCCTATTCAAACAAAGA
***
10884529 CTATGTTACTTAGCT
66 CTAAACTACTTAGCT
* * *
10884544 AACTACAAGTAAAACTCTTTTACATTAGTTGAAACTCCCAATGCTTGAGTCCTATTCAAACAATG
1 AACTACAAGTAAAACTATTTTACATTAGTTGAAAC-ACCAATGCTTGAGTCCTATTCAAACAAAG
10884609 ACTAAACTACTT
65 ACTAAACTACTT
10884621 GGCTTGTTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 32 0.48
81 35 0.52
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (80 bp):
AACTACAAGTAAAACTATTTTACATTAGTTGAAACACCAATGCTTGAGTCCTATTCAAACAAAGA
CTAAACTACTTAGCT
Found at i:10894808 original size:21 final size:21
Alignment explanation
Indices: 10894784--10894823 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10894774 TCTCTACAAT
*
10894784 ATTTTATGACTTCAACAAAAG
1 ATTTCATGACTTCAACAAAAG
*
10894805 ATTTCATGGCTTCAACAAA
1 ATTTCATGACTTCAACAAA
10894824 GCCTTTACTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (21 bp):
ATTTCATGACTTCAACAAAAG
Found at i:10902951 original size:15 final size:15
Alignment explanation
Indices: 10902928--10902962 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
10902918 CTCCCATTTC
10902928 ATTTAAATTCAAATT
1 ATTTAAATTCAAATT
* *
10902943 ATTTTAATTTAAATT
1 ATTTAAATTCAAATT
10902958 ATTTA
1 ATTTA
10902963 TTTATTTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTAAATTCAAATT
Found at i:10918374 original size:22 final size:21
Alignment explanation
Indices: 10918336--10918376 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
10918326 TGATTGTTGC
*
10918336 ATATGATGTTATTATGAATAT
1 ATATGATGTTATAATGAATAT
*
10918357 ATATGATTTTTATAATGAAT
1 ATATGA-TGTTATAATGAAT
10918377 GTTATTTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (21 bp):
ATATGATGTTATAATGAATAT
Found at i:10918737 original size:13 final size:13
Alignment explanation
Indices: 10918719--10918744 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10918709 GGCTATTGTC
10918719 TATTGTTTATGGT
1 TATTGTTTATGGT
10918732 TATTGTTTATGGT
1 TATTGTTTATGGT
10918745 ATATGGTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (13 bp):
TATTGTTTATGGT
Found at i:10918737 original size:20 final size:20
Alignment explanation
Indices: 10918712--10918753 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
10918702 TATATTGGGC
* *
10918712 TATTGTCTATTGTTTATGGT
1 TATTGTCTATGGTATATGGT
*
10918732 TATTGTTTATGGTATATGGT
1 TATTGTCTATGGTATATGGT
10918752 TA
1 TA
10918754 AGGAATAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.02, G:0.21, T:0.57
Consensus pattern (20 bp):
TATTGTCTATGGTATATGGT
Found at i:10918802 original size:24 final size:24
Alignment explanation
Indices: 10918774--10918852 Score: 62
Period size: 24 Copynumber: 3.4 Consensus size: 24
10918764 GCAAGTGTAT
10918774 TGGTA-AAATAAGCTTACGAGCTTA
1 TGGTACAAATAAGCTTAC-AGCTTA
* * *
10918798 TGGTACAAAT--G-GTA-AGTATTT
1 TGGTACAAATAAGCTTACAG-CTTA
10918819 TGGTA-AAATAAGCTTACTAGCTTA
1 TGGTACAAATAAGCTTAC-AGCTTA
10918843 TGGTACAAAT
1 TGGTACAAAT
10918853 GGTAAGTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 15
0.66 0.10 0.24
Matches are distributed among these distances:
20 6 0.15
21 7 0.17
22 3 0.07
23 3 0.07
24 12 0.29
25 10 0.24
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (24 bp):
TGGTACAAATAAGCTTACAGCTTA
Found at i:10918823 original size:21 final size:20
Alignment explanation
Indices: 10918798--10918872 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 20
10918788 TACGAGCTTA
10918798 TGGTACAAATGGTAAGTATTT
1 TGGTA-AAATGGTAAGTATTT
* * * *
10918819 TGGTAAAATAAGCTTACTAGCTTA
1 TGGTAAAAT--GGTAAGTA--TTT
10918843 TGGTACAAATGGTAAGTATTT
1 TGGTA-AAATGGTAAGTATTT
10918864 TGGTAAAAT
1 TGGTAAAAT
10918873 AAGCTTACAA
Statistics
Matches: 41, Mismatches: 8, Indels: 11
0.68 0.13 0.18
Matches are distributed among these distances:
20 8 0.20
21 12 0.29
22 5 0.12
23 5 0.12
24 7 0.17
25 4 0.10
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (20 bp):
TGGTAAAATGGTAAGTATTT
Found at i:10918824 original size:45 final size:45
Alignment explanation
Indices: 10918773--10918891 Score: 220
Period size: 45 Copynumber: 2.6 Consensus size: 45
10918763 GGCAAGTGTA
*
10918773 TTGGTAAAATAAGCTTACGAGCTTATGGTACAAATGGTAAGTATT
1 TTGGTAAAATAAGCTTACAAGCTTATGGTACAAATGGTAAGTATT
*
10918818 TTGGTAAAATAAGCTTACTAGCTTATGGTACAAATGGTAAGTATT
1 TTGGTAAAATAAGCTTACAAGCTTATGGTACAAATGGTAAGTATT
10918863 TTGGTAAAATAAGCTTACAAGCTTATGGT
1 TTGGTAAAATAAGCTTACAAGCTTATGGT
10918892 TAATAAATGG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.34
Consensus pattern (45 bp):
TTGGTAAAATAAGCTTACAAGCTTATGGTACAAATGGTAAGTATT
Found at i:10922282 original size:15 final size:15
Alignment explanation
Indices: 10922258--10922298 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
10922248 TAGAAGTATA
10922258 AATATAAATATAAAT
1 AATATAAATATAAAT
*
10922273 AATATTAATATAAAT
1 AATATAAATATAAAT
10922288 AGA-ATAAATAT
1 A-ATATAAATAT
10922299 TGATATTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 22 0.96
16 1 0.04
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (15 bp):
AATATAAATATAAAT
Found at i:10922297 original size:21 final size:21
Alignment explanation
Indices: 10922258--10922304 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
10922248 TAGAAGTATA
*
10922258 AATATAAATATAAATAATATT
1 AATATAAATAGAAATAATATT
10922279 AATATAAATAG-AATAAATATT
1 AATATAAATAGAAAT-AATATT
*
10922300 GATAT
1 AATAT
10922305 TTTGTGAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (21 bp):
AATATAAATAGAAATAATATT
Found at i:10922838 original size:145 final size:145
Alignment explanation
Indices: 10922571--10922839 Score: 335
Period size: 145 Copynumber: 1.9 Consensus size: 145
10922561 ACAGGGTATC
* * * *
10922571 GATATGTTTGATGGAAAGTCCGATACAATTTATTTAGAATGTTTCTGCATAATATTGTCCTTAAA
1 GATATGTTTGATGGAAAGTCCGATACAATTTATTTAGAATGTTTCTGCACAAAAGTGTCCTCAAA
* * * **
10922636 ATGTATCGAGACTTTTATAACTAATATCAATATTTTTTATTTCGAAAAGTAGTTTTCAATTTAAG
66 ATGTATCGAGAATTTTATAACTAATATCAATATTTTATATTTCGAAAACTAAATTTCAATTTAAG
10922701 TTCACTTCCAGCATT
131 TTCACTTCCAGCATT
* * * * *
10922716 GATATGTTTGAT-GATAAGTCTGATACAATTTATTTCGACTGTTTTTTCACAAAAGTGTCCTCAA
1 GATATGTTTGATGGA-AAGTCCGATACAATTTATTTAGAATGTTTCTGCACAAAAGTGTCCTCAA
* * * * *
10922780 CATGTATCGATAATTTTGATATC-AATATCGATATTTTATATTTCGAACACTAAATTTCAA
65 AATGTATCGAGAATTTT-ATAACTAATATCAATATTTTATATTTCGAAAACTAAATTTCAA
10922840 ATAAAGGATT
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
144 2 0.02
145 97 0.94
146 4 0.04
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.42
Consensus pattern (145 bp):
GATATGTTTGATGGAAAGTCCGATACAATTTATTTAGAATGTTTCTGCACAAAAGTGTCCTCAAA
ATGTATCGAGAATTTTATAACTAATATCAATATTTTATATTTCGAAAACTAAATTTCAATTTAAG
TTCACTTCCAGCATT
Found at i:10923686 original size:100 final size:100
Alignment explanation
Indices: 10923455--10924472 Score: 872
Period size: 101 Copynumber: 10.1 Consensus size: 100
10923445 TATATCATAA
* * ** * *
10923455 TTTAGGTCATATGTTTCAAATTGTTTATATTATAAAAAAGTAAGACAAAACAAGTTTATAAGGAT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAAGTAT
* * * *
10923520 AACATTATTGGTAGTGACTTTTTTAATTGTCAACTG
66 AACATTATAGGTAG-CACCTTTTTAATTGTCAACCG
* * * * * *
10923556 TTTACGTTATATGTAAT-AAACCATTTATATTATACAAGATTAAAACAACAA-AAGTTTATAAGT
1 TTTAGGTTATATGT-TTGAAACCGTTTATATTATACAAAAGTAAGACAA-AACAAGTTTATAAGT
* * * *
10923619 TTAACATTCTAGGTTGCACCTTTTTAATTGTCGACCG
64 ATAACATTATAGGTAGCACCTTTTTAATTGTCAACCG
* * *
10923656 TTTAGGTTATGTGTTTGAAACCGTTTATATTATTCAAAAGTAAGACAAAACAAGTTCATAAGTAT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAAGTAT
* **
10923721 AACATTATAGGTAG-AGACTTTTTAATTGTCAATTG
66 AACATTATAGGTAGCA-CCTTTTTAATTGTCAACCG
** * ** * * * * *
10923756 TTTACATTATATG-TAGTAAATTGTTTGTATTATGCAAAAATAAAACAAAA-AAGGTTTTTAAGT
1 TTTAGGTTATATGTTTG-AAACCGTTTATATTATACAAAAGTAAGACAAAACAA-GTTTATAAGT
* * * **
10923819 TTAACATTCTAGGTTGAGC-CTTTTTTAATTGTCAATAG
64 ATAACATTATAGG-T-AGCACCTTTTTAATTGTCAACCG
* * * * *
10923857 TTTAGGTTATATGTTTGAAACCATTTATATTATTCAAAAGTAAGACAAAATAGGTTTATAAGTGT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAAGTAT
* * * *
10923922 AACATTATAGGTAACGCTTTTTTAATTGTCAACCA
66 AACATTATAGGTAGCACCTTTTTAATTGTCAACCG
* ** * *
10923957 TTTAGATTATATGTTTGAATTCGTTTATATTATGCAAAAGTAAGAGAAAACAAGTTTATAAGTAT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAAGTAT
* * *
10924022 AACAATGA-AGGTAGCACCTTTTTTTAATTTTCAACCT
66 AAC-ATTATAGGTAGCACC--TTTTTAATTGTCAACCG
* * * * * *
10924059 TTTAGGTTAGATGTTTGAAACTGTTTATATGATACAAAAGTAAGAGAAAACAGGTTTATAGGTAT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAAGTAT
* * *
10924124 AACATTGTAGGTAGCACCTTTTTTAATTGTCACCCA
66 AACATTATAGGTAGCACC-TTTTTAATTGTCAACCG
* * * **** *
10924160 TTTAGGTTATATGTTTGAAATCGTTTATATTATGA-AAAAGTAAGACAAAACATGATTGCGTGTT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTAT-ACAAAAGTAAGACAAAACAAGTTTATAAGTA
** * *
10924224 TAACATCGTAGATAACACCTTTTTTAATTGTCAA-CG
65 TAACATTATAGGTAGCACC-TTTTTAATTGTCAACCG
** * * * * * * *
10924260 ATTTATATTATAAGCTTGAAACCATCTATATTATGCAAAAGTAAGA-GAAACAGGTTTA-AACGT
1 -TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAA-GT
* * * **
10924323 ATAACATTGTAGGTGGCGCCTTTTGTAATTGTCAATTG
64 ATAACATTATAGGTAGCACCTTTT-TAATTGTCAACCG
* ** * *
10924361 TTT-GTGTTATATGTTTAAAACAATTTATATTATGCAAAAGTAAGACAAAACATGTTTATAAGTA
1 TTTAG-GTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAAGTA
* *
10924425 TAACATTGTAGGTAGCGCCTTTTCTAATTGTCAACCG
65 TAACATTATAGGTAGCACCTTTT-TAATTGTCAACCG
*
10924462 TTTAAGTTATA
1 TTTAGGTTATA
10924473 CTATGAAACA
Statistics
Matches: 739, Mismatches: 151, Indels: 54
0.78 0.16 0.06
Matches are distributed among these distances:
99 14 0.02
100 305 0.41
101 325 0.44
102 95 0.13
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (100 bp):
TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAAGTTTATAAGTAT
AACATTATAGGTAGCACCTTTTTAATTGTCAACCG
Found at i:10923846 original size:201 final size:199
Alignment explanation
Indices: 10923455--10924472 Score: 924
Period size: 201 Copynumber: 5.1 Consensus size: 199
10923445 TATATCATAA
* * ** * * *
10923455 TTTAGGTCATATGTTTCAAATTGTTTATATTATAAAAAAGTAAGACAAAACAAGTTTATAAGGAT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAGGTTTATAAGTAT
* * * * *
10923520 AACATTATTGGTAGTGACTTTTTTAATTGTCAACTGTTTACGTTATATGTAATAAACCATTTATA
66 AACATTATAGGTAGAGACTTTTTTAATTGTCAACTGTTTACGTTATATGT-TTAAATCGTTTATA
* * * *
10923585 TTATACAAGATTAAAACAACAAAAGTTTATAAGTTTAACATTCTAGGTTGCACC-TTTTTAATTG
130 TTATGCAAAAATAAGACAA-AAAAGTTTATAAGTTTAACATTCTAGGTTG-ACCTTTTTTAATTG
*
10923649 TCGACCG
193 TCAACCG
* * * *
10923656 TTTAGGTTATGTGTTTGAAACCGTTTATATTATTCAAAAGTAAGACAAAACAAGTTCATAAGTAT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAGGTTTATAAGTAT
* * * * *
10923721 AACATTATAGGTAGAGAC-TTTTTAATTGTCAATTGTTTACATTATATGTAGTAAATTGTTTGTA
66 AACATTATAGGTAGAGACTTTTTTAATTGTCAACTGTTTACGTTATATGT-TTAAATCGTTTATA
* *
10923785 TTATGCAAAAATAAAACAAAAAAGGTTTTTAAGTTTAACATTCTAGGTTGAGCCTTTTTTAATTG
130 TTATGCAAAAATAAGACAAAAAA-GTTTATAAGTTTAACATTCTAGGTTGA-CCTTTTTTAATTG
**
10923850 TCAATAG
193 TCAACCG
* * * *
10923857 TTTAGGTTATATGTTTGAAACCATTTATATTATTCAAAAGTAAGACAAAATAGGTTTATAAGTGT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAGGTTTATAAGTAT
** *
10923922 AACATTATAGGTA-ACG-CTTTTTTAATTGTCAACCATTTA-GATTATATGTTTGAATTCGTTTA
66 AACATTATAGGTAGA-GACTTTTTTAATTGTCAACTGTTTACG-TTATATGTTT-AAATCGTTTA
* * * * ** *
10923984 TATTATGCAAAAGTAAGAGAAAACAAGTTTATAAGTATAACAATGAAGGTAGCACCTTTTTTTAA
128 TATTATGCAAAAATAAGACAAAA-AAGTTTATAAGTTTAACATTCTAGGTTG-ACC-TTTTTTAA
* *
10924049 TTTTCAACCT
190 TTGTCAACCG
* * * * *
10924059 TTTAGGTTAGATGTTTGAAACTGTTTATATGATACAAAAGTAAGAGAAAACAGGTTTATAGGTAT
1 TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAGGTTTATAAGTAT
* * * ** *
10924124 AACATTGTAGGTAGCA-CCTTTTTTAATTGTCACCCATTTAGGTTATATGTTTGAAATCGTTTAT
66 AACATTATAGGTAG-AGACTTTTTTAATTGTCAACTGTTTACGTTATATGTTT-AAATCGTTTAT
* * **** * **
10924188 ATTATG-AAAAAGTAAGACAAAACATGATTGCGTGTTTAACA-TCGTAGATAACACCTTTTTTAA
129 ATTATGCAAAAA-TAAGACAAAA-AAGTTTATAAGTTTAACATTC-TAGGT-TGACCTTTTTTAA
10924251 TTGTCAA-CG
190 TTGTCAACCG
** * * * * * *
10924260 ATTTATATTATAAGCTTGAAACCATCTATATTATGCAAAAGTAAGA-GAAACAGGTTTA-AACGT
1 -TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAGGTTTATAA-GT
* * * * * * ** * *
10924323 ATAACATTGTAGGTGGCGCCTTTTGTAATTGTCAATTGTTTGTGTTATATGTTTAAAACAATTTA
64 ATAACATTATAGGTAGAGACTTTTTTAATTGTCAACTGTTTACGTTATATGTTTAAATC-GTTTA
* * * * * * *
10924388 TATTATGCAAAAGTAAGACAAAACATGTTTATAAGTATAACATTGTAGGTAGCGCCTTTTCTAAT
128 TATTATGCAAAAATAAGACAAAA-AAGTTTATAAGTTTAACATTCTAGGTTG-ACCTTTTTTAAT
10924453 TGTCAACCG
191 TGTCAACCG
*
10924462 TTTAAGTTATA
1 TTTAGGTTATA
10924473 CTATGAAACA
Statistics
Matches: 676, Mismatches: 116, Indels: 50
0.80 0.14 0.06
Matches are distributed among these distances:
199 5 0.01
200 91 0.13
201 355 0.53
202 146 0.22
203 76 0.11
204 3 0.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (199 bp):
TTTAGGTTATATGTTTGAAACCGTTTATATTATACAAAAGTAAGACAAAACAGGTTTATAAGTAT
AACATTATAGGTAGAGACTTTTTTAATTGTCAACTGTTTACGTTATATGTTTAAATCGTTTATAT
TATGCAAAAATAAGACAAAAAAGTTTATAAGTTTAACATTCTAGGTTGACCTTTTTTAATTGTCA
ACCG
Found at i:10924551 original size:28 final size:28
Alignment explanation
Indices: 10924485--10924540 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
10924475 ATGAAACATT
10924485 TTATATTATTAAATATAATACAAATCCA
1 TTATATTATTAAATATAATACAAATCCA
10924513 TTATATTATTAAATATAATACAAATCCA
1 TTATATTATTAAATATAATACAAATCCA
10924541 ATTTTATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (28 bp):
TTATATTATTAAATATAATACAAATCCA
Found at i:10931432 original size:21 final size:21
Alignment explanation
Indices: 10931408--10931455 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
10931398 CAGTAATAGG
* *
10931408 TTGATGTTAAGTCCCTCAATA
1 TTGATATTAAGTCCCTAAATA
*
10931429 TTGATATTAATTCCCTAAATA
1 TTGATATTAAGTCCCTAAATA
10931450 TTGATA
1 TTGATA
10931456 CTTTTTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (21 bp):
TTGATATTAAGTCCCTAAATA
Found at i:10934870 original size:26 final size:27
Alignment explanation
Indices: 10934841--10934917 Score: 63
Period size: 26 Copynumber: 2.9 Consensus size: 27
10934831 TCATCTAACT
10934841 TGCATTATTGGCACCTTTCTACCAA-A
1 TGCATTATTGGCACCTTTCTACCAACA
** * *
10934867 TGCACAATTAGG--CCTTTC-ATCTAACT
1 TGCATTATT-GGCACCTTTCTA-CCAACA
*
10934893 TGCATTATTGGCACCTTTCTGCCAA
1 TGCATTATTGGCACCTTTCTACCAA
10934918 TTACACAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 11
0.66 0.14 0.20
Matches are distributed among these distances:
24 1 0.03
25 11 0.30
26 14 0.38
27 11 0.30
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (27 bp):
TGCATTATTGGCACCTTTCTACCAACA
Found at i:10934907 original size:52 final size:53
Alignment explanation
Indices: 10934829--10935028 Score: 298
Period size: 52 Copynumber: 3.8 Consensus size: 53
10934819 GCATTTAACA
* *
10934829 TTTCATCTAACTTGCATTATTGGCACCTTTCTACCAA-ATGCACAATTAGGCC
1 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATATGCACAATTAGGCC
* * *
10934881 TTTCATCTAACTTGCATTATTGGCACCTTTCTGCCAAT-TACACAGTTAGGCC
1 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATATGCACAATTAGGCC
** * *
10934933 TTTCATCTAACTTATATTATTGACACCTTTATGCCAATATGCA-TATTAGGCC
1 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATATGCACAATTAGGCC
10934985 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATATGCAC
1 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATATGCAC
10935029 TCATTTTTAT
Statistics
Matches: 132, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
52 129 0.98
53 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (53 bp):
TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATATGCACAATTAGGCC
Found at i:10934989 original size:104 final size:106
Alignment explanation
Indices: 10934770--10935022 Score: 332
Period size: 104 Copynumber: 2.4 Consensus size: 106
10934760 TACACTGTTT
* * * *
10934770 TTTCATCTAACTTGCATTAGTGACACTTTTCTGCCAAATGCACAGTTAGGCATTTAACATTTCAT
1 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATTACACAGTTAGGC-----ACATTTCAT
* * *
10934835 CTAACTTGCATTATTGGCACCTTTCTACCAAATGCACAATTAGGCC
61 CTAACTTACATTATTGACACCTTTATACCAAATGCACAATTAGGCC
*
10934881 TTTCATCTAACTTGCATTATTGGCACCTTTCTGCCAATTACACAGTTAGGC-C-TTTCATCTAAC
1 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATTACACAGTTAGGCACATTTCATCTAAC
* * *
10934944 TTATATTATTGACACCTTTATGCCAATATGCA-TATTAGGCC
66 TTACATTATTGACACCTTTATACCAA-ATGCACAATTAGGCC
10934985 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAAT
1 TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAAT
10935023 ATGCACTCAT
Statistics
Matches: 129, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
104 77 0.60
105 6 0.05
111 46 0.36
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (106 bp):
TTTCATCTAACTTGCATTATTGACACCTTTCTGCCAATTACACAGTTAGGCACATTTCATCTAAC
TTACATTATTGACACCTTTATACCAAATGCACAATTAGGCC
Found at i:10935000 original size:25 final size:25
Alignment explanation
Indices: 10934873--10935001 Score: 70
Period size: 26 Copynumber: 5.0 Consensus size: 25
10934863 CAAATGCACA
10934873 ATTAGGCCTTTCATCTAACTTGCATT
1 ATTAGGCCTTTCATCTAACTTGCA-T
* * *
10934899 ATT-GGCACCTTTC-TGCCAA-TTACAC
1 ATTAGG--CCTTTCAT-CTAACTTGCAT
**
10934924 AGTTAGGCCTTTCATCTAACTTATATT
1 A-TTAGGCCTTTCATCTAACTTGCA-T
** *
10934951 ATTGACACCTTT-ATGCCAA-TATGCAT
1 ATT-AGGCCTTTCAT-CTAACT-TGCAT
10934977 ATTAGGCCTTTCATCTAACTTGCAT
1 ATTAGGCCTTTCATCTAACTTGCAT
10935002 TATTGACACC
Statistics
Matches: 76, Mismatches: 14, Indels: 27
0.65 0.12 0.23
Matches are distributed among these distances:
25 26 0.34
26 27 0.36
27 23 0.30
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.39
Consensus pattern (25 bp):
ATTAGGCCTTTCATCTAACTTGCAT
Found at i:10935027 original size:27 final size:27
Alignment explanation
Indices: 10934948--10935027 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
10934938 TCTAACTTAT
*
10934948 ATTATTGACACCTTTATGCCAATATGC
1 ATTATTGACACCTTTCTGCCAATATGC
** *
10934975 A-TATT-AGGCCTTTCAT-CTAACT-TGC
1 ATTATTGACACCTTTC-TGCCAA-TATGC
10935000 ATTATTGACACCTTTCTGCCAATATGC
1 ATTATTGACACCTTTCTGCCAATATGC
10935027 A
1 A
10935028 CTCATTTTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
25 13 0.32
26 12 0.30
27 15 0.38
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.38
Consensus pattern (27 bp):
ATTATTGACACCTTTCTGCCAATATGC
Found at i:10945675 original size:182 final size:182
Alignment explanation
Indices: 10945368--10945734 Score: 734
Period size: 182 Copynumber: 2.0 Consensus size: 182
10945358 AAATTGAAGA
10945368 ACTTGGTGGTATTATATATGTGTAATCGCTCTACTAGGGACTCATGGGGTATGGTCACTAGTCGA
1 ACTTGGTGGTATTATATATGTGTAATCGCTCTACTAGGGACTCATGGGGTATGGTCACTAGTCGA
10945433 ACTGGGGGTACTGGTGGGGGAGGTGGTGCAACTAAAGAACTATGTAGGGACCTAGCGATCTACCT
66 ACTGGGGGTACTGGTGGGGGAGGTGGTGCAACTAAAGAACTATGTAGGGACCTAGCGATCTACCT
10945498 AAGTATAGAGGTATGTTCCCTAAAAAAGGTTAACTCATCGACCCCAACATCC
131 AAGTATAGAGGTATGTTCCCTAAAAAAGGTTAACTCATCGACCCCAACATCC
10945550 ACTTGGTGGTATTATATATGTGTAATCGCTCTACTAGGGACTCATGGGGTATGGTCACTAGTCGA
1 ACTTGGTGGTATTATATATGTGTAATCGCTCTACTAGGGACTCATGGGGTATGGTCACTAGTCGA
10945615 ACTGGGGGTACTGGTGGGGGAGGTGGTGCAACTAAAGAACTATGTAGGGACCTAGCGATCTACCT
66 ACTGGGGGTACTGGTGGGGGAGGTGGTGCAACTAAAGAACTATGTAGGGACCTAGCGATCTACCT
10945680 AAGTATAGAGGTATGTTCCCTAAAAAAGGTTAACTCATCGACCCCAACATCC
131 AAGTATAGAGGTATGTTCCCTAAAAAAGGTTAACTCATCGACCCCAACATCC
10945732 ACT
1 ACT
10945735 AGAGCCTATT
Statistics
Matches: 185, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
182 185 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (182 bp):
ACTTGGTGGTATTATATATGTGTAATCGCTCTACTAGGGACTCATGGGGTATGGTCACTAGTCGA
ACTGGGGGTACTGGTGGGGGAGGTGGTGCAACTAAAGAACTATGTAGGGACCTAGCGATCTACCT
AAGTATAGAGGTATGTTCCCTAAAAAAGGTTAACTCATCGACCCCAACATCC
Found at i:10946962 original size:20 final size:20
Alignment explanation
Indices: 10946932--10947022 Score: 130
Period size: 20 Copynumber: 4.5 Consensus size: 20
10946922 ACTTTTTGTA
* *
10946932 GGTACCGATACTGACCCTTC
1 GGTATCGATACTAACCCTTC
*
10946952 AGTATCGATACTAACCCTTC
1 GGTATCGATACTAACCCTTC
10946972 GGTATCGATACTAACCCTTC
1 GGTATCGATACTAACCCTTC
*
10946992 GGTAAT-GATACTAACCCTTT
1 GGT-ATCGATACTAACCCTTC
10947012 GGTATCGATAC
1 GGTATCGATAC
10947023 CGCCTGACTG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
19 2 0.03
20 60 0.94
21 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.30
Consensus pattern (20 bp):
GGTATCGATACTAACCCTTC
Found at i:10949331 original size:73 final size:73
Alignment explanation
Indices: 10949230--10949384 Score: 208
Period size: 73 Copynumber: 2.1 Consensus size: 73
10949220 ATTGAATATC
* *
10949230 TAAAAGTATCGATCATCATCGCATAAGTATTGATAGTTTGAAT-TTCGATCTTT-T-TATCAAAT
1 TAAAAGTATCAATCATCATCGCATAAGTATTGATA-TTTGAATGTTCCAT-TTTATCT-TCAAAT
10949292 TTTTCAATTTT
63 TTTTCAATTTT
* * * *
10949303 TAAAAGTGTCAATCATTATCGCATAAGTATTGATATTTTAATGTTCCATTTTATCTTCAACTTTT
1 TAAAAGTATCAATCATCATCGCATAAGTATTGATATTTGAATGTTCCATTTTATCTTCAAATTTT
10949368 TCAATTTT
66 TCAATTTT
10949376 TAAAAGTAT
1 TAAAAGTAT
10949385 TGACAATAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
72 9 0.12
73 62 0.86
74 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (73 bp):
TAAAAGTATCAATCATCATCGCATAAGTATTGATATTTGAATGTTCCATTTTATCTTCAAATTTT
TCAATTTT
Found at i:10949765 original size:82 final size:80
Alignment explanation
Indices: 10949647--10949864 Score: 232
Period size: 75 Copynumber: 2.8 Consensus size: 80
10949637 TCGCAACATA
* * * * * *
10949647 TTTCTTAGTAAACAATAAAATTCTTAGTCGCTACCTATTTCATTAAAAAAATATTAACATTACAT
1 TTTCTTAGTAAACCATTAAATTCTTGGGCGCAACCTATTTTATT--AAAAATATTAACATTACAT
*
10949712 TACAAATCATAACCTTT
64 TACAAATCATAACATTT
* *
10949729 TTTCTTAGCAAACCATTACATTCTTGGGCGCAACCTATTTTATTAAAAATATT---A--ACATTA
1 TTTCTTAGTAAACCATTAAATTCTTGGGCGCAACCTATTTTATTAAAAATATTAACATTACATTA
* *
10949789 CAGATCGTAACATTT
66 CAAATCATAACATTT
* * * * *
10949804 TTTCTTGGTGAACCATTATATTCTTGAGTGCAACCTATTTTATT-AAAATATTAACATTACA
1 TTTCTTAGTAAACCATTAAATTCTTGGGCGCAACCTATTTTATTAAAAATATTAACATTACA
10949865 GATCACAACC
Statistics
Matches: 114, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
74 8 0.07
75 56 0.49
77 2 0.02
79 3 0.03
80 9 0.08
82 36 0.32
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (80 bp):
TTTCTTAGTAAACCATTAAATTCTTGGGCGCAACCTATTTTATTAAAAATATTAACATTACATTA
CAAATCATAACATTT
Found at i:10949868 original size:74 final size:74
Alignment explanation
Indices: 10949708--10949917 Score: 269
Period size: 75 Copynumber: 2.8 Consensus size: 74
10949698 TATTAACATT
* ** *
10949708 ACATTACAAATCATAACCTTTTTTCTTAGCAAACCATTACATTCTTGGGCGCAACCTATTTTATT
1 ACATTACAGATCATAA-CTTTTTTCTTAGTGAACCATTATATTCTTGGGCGCAACCTATTTTATT
10949773 AAAAATATTA
65 AAAAATATTA
* * * *
10949783 ACATTACAGATCGTAACATTTTTTCTTGGTGAACCATTATATTCTTGAGTGCAACCTATTTTATT
1 ACATTACAGATCATAAC-TTTTTTCTTAGTGAACCATTATATTCTTGGGCGCAACCTATTTTATT
10949848 -AAAATATTA
65 AAAAATATTA
* * * * *
10949857 ACATTACAGATCACAACCTATTTCTTAGTGAACCGTGATATTCTTGGGCGCAACCGTATTT
1 ACATTACAGATCATAACTTTTTTCTTAGTGAACCATTATATTCTTGGGCGCAACC-TATTT
10949918 CTTATAAATA
Statistics
Matches: 116, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
73 31 0.27
74 30 0.26
75 55 0.47
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (74 bp):
ACATTACAGATCATAACTTTTTTCTTAGTGAACCATTATATTCTTGGGCGCAACCTATTTTATTA
AAAATATTA
Found at i:10956832 original size:22 final size:20
Alignment explanation
Indices: 10956807--10956853 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
10956797 GGGGTGTTGG
*
10956807 TACCATAGTAGGGTAGTATCGA
1 TACCATAGTAAGG--GTATCGA
*
10956829 TACCATGGTAAGGGTATCGA
1 TACCATAGTAAGGGTATCGA
10956849 TACCA
1 TACCA
10956854 GGAAACATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
22 11 0.48
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (20 bp):
TACCATAGTAAGGGTATCGA
Found at i:10956850 original size:95 final size:95
Alignment explanation
Indices: 10956723--10956946 Score: 290
Period size: 95 Copynumber: 2.4 Consensus size: 95
10956713 ATACCTACGA
* *
10956723 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGCAACATCGAATCTAATATCGGTATCGA
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATCGGTATCGA
* * ** *
10956788 TA-TCGTAAGGGGGTGTTGGTACCATAGTAG
66 TACCCG-AAGGGAGAATCGGTACCATAGTAG
* *
10956818 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATTTAAAATTGGTATCGA
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATCGGTATCGA
*
10956883 TACCCGAAGGGAGAATCGGTACCATAGTAT
66 TACCCGAAGGGAGAATCGGTACCATAGTAG
* * * *
10956913 AGAAGTATCGATACCACGGT-AGTTGTATCGATAC
1 GGTAGTATCGATACCATGGTAAG-GGTATCGATAC
10956947 TATTAAGCTT
Statistics
Matches: 113, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
94 2 0.02
95 109 0.96
96 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.25
Consensus pattern (95 bp):
GGTAGTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATCGGTATCGA
TACCCGAAGGGAGAATCGGTACCATAGTAG
Found at i:10957377 original size:46 final size:46
Alignment explanation
Indices: 10957307--10957634 Score: 505
Period size: 46 Copynumber: 7.1 Consensus size: 46
10957297 TTAGAGTATG
* *
10957307 TAAAATGCAT-AAATGGATACATTAAGGCATGAAAGTATGCCATAAT
1 TAAAATGCATGAAAT-GATGCATTAAGGCATGAAAGGATGCCATAAT
* * *
10957353 TAAAATGAATGAAAGGATGCATTAAGGCATGAAATGATGCCATAAT
1 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
*
10957399 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCTATAAT
1 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
10957445 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
1 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
* * * *
10957491 TAAAATGCATGAAAGGATGCATTAAGGTATGAATGGATGTCATAAT
1 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
* * *
10957537 TAAAATACATGAAATGATGCATTGAGGCATGAAAGGATGTCATAAT
1 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
*
10957583 TAAAATGCATGAAATGATGCATTAAGGCATGAATGGATGCCATAATT
1 TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAA-T
10957630 TAAAA
1 TAAAA
10957635 GTATAAATGG
Statistics
Matches: 257, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
46 248 0.96
47 9 0.04
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (46 bp):
TAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAT
Found at i:10963969 original size:95 final size:94
Alignment explanation
Indices: 10963837--10964023 Score: 279
Period size: 95 Copynumber: 2.0 Consensus size: 94
10963827 ATACCTACGA
* * *
10963837 GGTAGTATCGATACCATGGTAAGGGTATCGATTCCAGGCAACATCGAATCTAAAATCT-GTATCG
1 GGTAGTATCGATACCAGGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAAT-TGGTATCG
*
10963901 ATACCT-TAAGGAGGTATCGGTACCATAGTAG
65 ATA-CTGGAAGG-GGTATCGGTACCATAGTAG
*
10963932 GGTAGTATCGATACCAGGGTAAGGGTATCGATACCAGGAAACATCGAATTTAAAATTGGTATCGA
1 GGTAGTATCGATACCAGGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTATCGA
*
10963997 TACTGGAAGGGTTATCGGTACCATAGT
66 TACTGGAAGGGGTATCGGTACCATAGT
10964024 GTAGAACTAT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
94 19 0.23
95 65 0.77
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (94 bp):
GGTAGTATCGATACCAGGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTATCGA
TACTGGAAGGGGTATCGGTACCATAGTAG
Found at i:10964058 original size:94 final size:95
Alignment explanation
Indices: 10963842--10964059 Score: 257
Period size: 95 Copynumber: 2.3 Consensus size: 95
10963832 TACGAGGTAG
* * * *
10963842 TATCGATACCATGGTAAGGGTATCGATTCCAGGCAACATCGAATCTAAAATCTGTATCGATACCT
1 TATCGATACCAGGGTAAGAGTATCGATACCAGGAAACATCGAATCTAAAATCTGTATCGATACCT
* * * *
10963907 TAAGGAGGTATCGGTACCATAGTAGGGTAG
66 GAAGGAGGTATCGGTACCATAGTAGAGAAC
* *
10963937 TATCGATACCAGGGTAAGGGTATCGATACCAGGAAACATCGAATTTAAAAT-TGGTATCGATA-C
1 TATCGATACCAGGGTAAGAGTATCGATACCAGGAAACATCGAATCTAAAATCT-GTATCGATACC
*
10964000 TGGAAGG-GTTATCGGTACCATAGT-GTAGAAC
65 T-GAAGGAGGTATCGGTACCATAGTAG-AGAAC
*
10964031 TATCGGTACCAGGGT-AGTAGTATCGATAC
1 TATCGATACCAGGGTAAG-AGTATCGATAC
10964060 TATTAAGCTT
Statistics
Matches: 108, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
93 3 0.03
94 45 0.42
95 60 0.56
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (95 bp):
TATCGATACCAGGGTAAGAGTATCGATACCAGGAAACATCGAATCTAAAATCTGTATCGATACCT
GAAGGAGGTATCGGTACCATAGTAGAGAAC
Found at i:10964482 original size:26 final size:26
Alignment explanation
Indices: 10964452--10964639 Score: 133
Period size: 26 Copynumber: 7.9 Consensus size: 26
10964442 CGAATACATT
*
10964452 AAGGCATGAAATGATGCCATAATTAA
1 AAGGCATGAAAGGATGCCATAATTAA
10964478 AAGGCATGAAAGGATGCCATAATTAA
1 AAGGCATGAAAGGATGCCATAATTAA
** * *
10964504 AATTCACGAAATGATG-C---ATT--
1 AAGGCATGAAAGGATGCCATAATTAA
*
10964524 AAGTCATGAAAGGATGCCATAATTAA
1 AAGGCATGAAAGGATGCCATAATTAA
*
10964550 AATGCATGAAAGGATG-C---ATT--
1 AAGGCATGAAAGGATGCCATAATTAA
* * *
10964570 GAGGCATGAAAGGAAGTCATAATTAA
1 AAGGCATGAAAGGATGCCATAATTAA
* *
10964596 AATGCATGAAATGATG-C---ATT--
1 AAGGCATGAAAGGATGCCATAATTAA
*
10964616 AAGGCATGAATGGATGCCATAATT
1 AAGGCATGAAAGGATGCCATAATT
10964640 TAAATGTATA
Statistics
Matches: 126, Mismatches: 20, Indels: 34
0.70 0.11 0.19
Matches are distributed among these distances:
20 39 0.31
21 3 0.02
22 9 0.07
24 9 0.07
25 3 0.02
26 63 0.50
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (26 bp):
AAGGCATGAAAGGATGCCATAATTAA
Found at i:10964532 original size:46 final size:46
Alignment explanation
Indices: 10964478--10964653 Score: 255
Period size: 46 Copynumber: 3.8 Consensus size: 46
10964468 CCATAATTAA
* *
10964478 AAGGCATGAAAGGATGCCATAATTAAAATTCACGAAATGATGCATT
1 AAGGCATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATT
* *
10964524 AAGTCATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATT
1 AAGGCATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATT
* * *
10964570 GAGGCATGAAAGGAAGTCATAATTAAAATGCATGAAATGATGCATT
1 AAGGCATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATT
* * *
10964616 AAGGCATGAATGGATGCCATAATTTAAATGTAT-AAATG
1 AAGGCATGAAAGGATGCCATAATTAAAATGCATGAAATG
10964654 GATGTGTTAA
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 5 0.04
46 110 0.96
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.25
Consensus pattern (46 bp):
AAGGCATGAAAGGATGCCATAATTAAAATGCATGAAATGATGCATT
Found at i:10964539 original size:20 final size:20
Alignment explanation
Indices: 10964511--10964583 Score: 56
Period size: 20 Copynumber: 3.4 Consensus size: 20
10964501 TAAAATTCAC
*
10964511 GAAATGATGCATTAAGTCAT
1 GAAAGGATGCATTAAGTCAT
*
10964531 GAAAGGATGCCATAATTAAAATGCAT
1 GAAAGGATG-C---ATT-AAGT-CAT
* *
10964557 GAAAGGATGCATTGAGGCAT
1 GAAAGGATGCATTAAGTCAT
10964577 GAAAGGA
1 GAAAGGA
10964584 AGTCATAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
20 18 0.43
21 2 0.05
22 3 0.07
24 3 0.07
25 4 0.10
26 12 0.29
ACGTcount: A:0.42, C:0.10, G:0.26, T:0.22
Consensus pattern (20 bp):
GAAAGGATGCATTAAGTCAT
Found at i:10968801 original size:31 final size:31
Alignment explanation
Indices: 10968763--10968841 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 31
10968753 CATATCCCTT
10968763 CAAATAAATAAATAAATTTGAAACAAACTAG
1 CAAATAAATAAATAAATTTGAAACAAACTAG
* * * *
10968794 CAAATAAATAAGT-AATTTGAAATAAATTAT
1 CAAATAAATAAATAAATTTGAAACAAACTAG
* *
10968824 TATATAAATAAATAAATT
1 CAAATAAATAAATAAATT
10968842 ATTCAAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 24 0.60
31 16 0.40
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (31 bp):
CAAATAAATAAATAAATTTGAAACAAACTAG
Found at i:10968852 original size:18 final size:18
Alignment explanation
Indices: 10968813--10968876 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
10968803 AAGTAATTTG
*
10968813 AAATAAATTATTATATAAAT
1 AAATAAATTATT-CA-AAAT
10968833 AAATAAATTATTCAAAAT
1 AAATAAATTATTCAAAAT
* * *
10968851 AAAGAAATAATTCAAAGT
1 AAATAAATTATTCAAAAT
10968869 AAATAAAT
1 AAATAAAT
10968877 AAATAAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
18 26 0.67
19 1 0.03
20 12 0.31
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (18 bp):
AAATAAATTATTCAAAAT
Found at i:10970115 original size:14 final size:14
Alignment explanation
Indices: 10970078--10970107 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
10970068 ATTTTGATCC
10970078 TAAATATTAATTTT
1 TAAATATTAATTTT
10970092 TAAATATTAATTTT
1 TAAATATTAATTTT
10970106 TA
1 TA
10970108 TTTATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TAAATATTAATTTT
Found at i:10975292 original size:559 final size:564
Alignment explanation
Indices: 10974222--10975316 Score: 1675
Period size: 559 Copynumber: 1.9 Consensus size: 564
10974212 CTCACTTATA
** *
10974222 AAAGAGAATATTGATTTTCTTAGATGTTCTGAATTCAAGCATCAATGTCTGTAAGATATGTGTAC
1 AAAGAGAATATTGATTTTCTTAGATGTTCTGAATTCAAGCATCAACATATGTAAGATATGTGTAC
* * * *
10974287 ATTGTTAATAGATTAAAAATAATTCTGAATATATACTATTTTATAATCACTCTAGAATATTAAAA
66 ATTGTTAATAGATTAAAAATAATCCTGAACAAATACTATTTTATAATCAATCTAGAATATTAAAA
* * * * *
10974352 AAGTATTCATTATTATAATGTTATTATTTATCACTGTAAAAATTATATTAGCAAACACATTCATT
131 AAGTATTCATTATTAAAATGTTATTACTTAACACTATAAAAATTATATTAGCAAACACATTAATT
*
10974417 AGTAAAGCCATGTTGTCTAGCTAGCTTGTTTCTCCATTGAATTGGCTAGATTTGGTGGTTACTAA
196 AGTAAAGCCATGTTGTCTAGCTAGCTTGTTTCTCCATTGAATTGGCTAGATTTGGTGATTA-TAA
* * * *
10974482 TTTGGATCTAGTTGGCCTTGCTTGTTTTCTTGTCTTGCTTTGGAACATTTGGAATGGGAGTAATT
260 TTTGGATCTAATTGGCCTTGATTGTTTTCTTGGCTTGCTTTGGAACATTTGGAATGGGAGGAATT
* * *
10974547 CCAAAGTGCACAATAACAAGCTTCAACACCATGGATACCGGCTATCAACACAGCCTCCCTTCAAC
325 CCAAAGTGCACAATAACAAGCTTCAACACCAAGGATAACAGCTATCAACACAGCCTCCCTTCAAC
*
10974612 ACGACTACCTATTGGCCAGGGAGCAGGCACCCAGAAGAGCCAGAGATGTGCGATCTTCTCCAGTA
390 ACGACTACCTATTGGCCAGGGAGCAGGCACCCAGAAGAGCCAGAGATGTGCGATCTTCTCCAGGA
* *
10974677 GTAGCTTCAGGTATTAATCAGGTGAAGTGGAAGCCTCCCCCTCAAGGGTATGTGAAGATTAATTT
455 GTAGCTTCAGGTATTAATCAGGTGAAGTGGAAACCTCCCCCTCAAGGGTATGTGAAGATCAATTT
10974742 GGATAGTGCTTTTGAGTCTATTGGGCATATAAAAGAGATACGTGT
520 GGATAGTGCTTTTGAGTCTATTGGGCATATAAAAGAGATACGTGT
* * *
10974787 AAAGAGAATATTGGTTTTCTTAGATGTTCTGAATTCAAGCATCGACATATGTAAGATATGTGTAT
1 AAAGAGAATATTGATTTTCTTAGATGTTCTGAATTCAAGCATCAACATATGTAAGATATGTGTAC
*
10974852 ATTGTTAATATATTAAAAA-AA-CCTGAACAAATACTATTTTATAATCAATCTAGAATATTAAAA
66 ATTGTTAATAGATTAAAAATAATCCTGAACAAATACTATTTTATAATCAATCTAGAATATTAAAA
* *
10974915 AA-TATTTATTATTAAAATGTTATTACTTAACACTATAAAAATTATATTAGCAAACATATTAATT
131 AAGTATTCATTATTAAAATGTTATTACTTAACACTATAAAAATTATATTAGCAAACACATTAATT
*
10974979 AGTAAAGCCATGTTGTCTAG-TCAGCTTGTTTCTCCATTGGATTGGCTAGATTTGGTGATT-TAA
196 AGTAAAGCCATGTTGTCTAGCT-AGCTTGTTTCTCCATTGAATTGGCTAGATTTGGTGATTATAA
*
10975042 TTTGGATCTAATTGGCCTTGATTG-TTTCTTGGCTTGCTTTGGAACCTTTGGAATGGGAGGAATT
260 TTTGGATCTAATTGGCCTTGATTGTTTTCTTGGCTTGCTTTGGAACATTTGGAATGGGAGGAATT
* * *
10975106 CCAAAGTGCATGAA-AACAAGCTTCAATC-CCAAGGATAATAGCTATCAACACTGCCTCCCTTCA
325 CCAAAGTGCA-CAATAACAAGCTTCAA-CACCAAGGATAACAGCTATCAACACAGCCTCCCTTCA
** * * * *
10975169 ACACGACTACCTATTGGCCAGGGAGCAGGTGCCGAGAAGAGCCAGAGCTGTGTGATTTTCTCCAG
388 ACACGACTACCTATTGGCCAGGGAGCAGGCACCCAGAAGAGCCAGAGATGTGCGATCTTCTCCAG
* * * * * *
10975234 GAGTAGCTTCATGTATTAATCATGTGAATTGGAAACCTCCCCTTCCAGGGTTTGTGAAGATCAAT
453 GAGTAGCTTCAGGTATTAATCAGGTGAAGTGGAAACCTCCCCCTCAAGGGTATGTGAAGATCAAT
*
10975299 TTGGATGGTGCTTTTGAG
518 TTGGATAGTGCTTTTGAG
10975317 AATCGGTGGA
Statistics
Matches: 480, Mismatches: 47, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
559 221 0.46
560 28 0.06
561 1 0.00
562 111 0.23
563 40 0.08
564 2 0.00
565 77 0.16
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (564 bp):
AAAGAGAATATTGATTTTCTTAGATGTTCTGAATTCAAGCATCAACATATGTAAGATATGTGTAC
ATTGTTAATAGATTAAAAATAATCCTGAACAAATACTATTTTATAATCAATCTAGAATATTAAAA
AAGTATTCATTATTAAAATGTTATTACTTAACACTATAAAAATTATATTAGCAAACACATTAATT
AGTAAAGCCATGTTGTCTAGCTAGCTTGTTTCTCCATTGAATTGGCTAGATTTGGTGATTATAAT
TTGGATCTAATTGGCCTTGATTGTTTTCTTGGCTTGCTTTGGAACATTTGGAATGGGAGGAATTC
CAAAGTGCACAATAACAAGCTTCAACACCAAGGATAACAGCTATCAACACAGCCTCCCTTCAACA
CGACTACCTATTGGCCAGGGAGCAGGCACCCAGAAGAGCCAGAGATGTGCGATCTTCTCCAGGAG
TAGCTTCAGGTATTAATCAGGTGAAGTGGAAACCTCCCCCTCAAGGGTATGTGAAGATCAATTTG
GATAGTGCTTTTGAGTCTATTGGGCATATAAAAGAGATACGTGT
Found at i:10978990 original size:17 final size:17
Alignment explanation
Indices: 10978965--10978998 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10978955 TTTTATCCCA
*
10978965 ATTTATTTATTTCATTT
1 ATTTATTTATTTAATTT
*
10978982 ATTTGTTTATTTAATTT
1 ATTTATTTATTTAATTT
10978999 TTATCTCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTATTTATTTAATTT
Found at i:10979101 original size:21 final size:22
Alignment explanation
Indices: 10979066--10979118 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
10979056 TTTTAATTCA
* * *
10979066 TTATTTATTATTTTATTATT-T
1 TTATTTTTTAATTTATAATTAT
*
10979087 TTCTTTTTTAATTTATAATTAT
1 TTATTTTTTAATTTATAATTAT
10979109 TTATTTTTTA
1 TTATTTTTTA
10979119 TACCTTTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (22 bp):
TTATTTTTTAATTTATAATTAT
Found at i:10982070 original size:11 final size:11
Alignment explanation
Indices: 10982039--10982086 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
10982029 AGGCAATCCA
*
10982039 TTTCGTTATAT
1 TTTCGTTTTAT
*
10982050 TTTTGTTTTTAT
1 TTTCG-TTTTAT
10982062 TTTCGTTTTA-
1 TTTCGTTTTAT
*
10982072 TTTCATTTTAT
1 TTTCGTTTTAT
10982083 TTTC
1 TTTC
10982087 AGCAAACTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 9 0.29
11 13 0.42
12 9 0.29
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.73
Consensus pattern (11 bp):
TTTCGTTTTAT
Found at i:10995910 original size:18 final size:18
Alignment explanation
Indices: 10995889--10995934 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
10995879 GCTAATTTTG
10995889 GTATCGATACTCAAGGTA
1 GTATCGATACTCAAGGTA
*
10995907 GTATCGATACTCAGGGTA
1 GTATCGATACTCAAGGTA
10995925 GTATCGATAC
1 GTATCGATAC
10995935 CCCCAAAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.28
Consensus pattern (18 bp):
GTATCGATACTCAAGGTA
Found at i:10996505 original size:22 final size:23
Alignment explanation
Indices: 10996368--10996530 Score: 121
Period size: 22 Copynumber: 7.4 Consensus size: 23
10996358 CCCAGCGCTA
*
10996368 AGGCACTT-TAGTATCAGTG-CG
1 AGGCACTTCTAGTATCAGTGTTG
* *
10996389 TATGTACTTCT-GTATCAGTGTTG
1 -AGGCACTTCTAGTATCAGTGTTG
*
10996412 AGGCACTT-TAGTATCAGTG-CG
1 AGGCACTTCTAGTATCAGTGTTG
**
10996433 TATACACTTCT-GTATCAGTGTTG
1 -AGGCACTTCTAGTATCAGTGTTG
* * *
10996456 AGGTACTT-TAGTATCAATG-CG
1 AGGCACTTCTAGTATCAGTGTTG
*
10996477 TATGCACTTCTA-TATCAGTGTTG
1 -AGGCACTTCTAGTATCAGTGTTG
* *
10996500 AGGCACTT-TAGTATTAGTGTTA
1 AGGCACTTCTAGTATCAGTGTTG
10996522 AGGCACTTC
1 AGGCACTTC
10996531 AGTGATATAA
Statistics
Matches: 108, Mismatches: 21, Indels: 23
0.71 0.14 0.15
Matches are distributed among these distances:
21 6 0.06
22 95 0.88
23 7 0.06
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (23 bp):
AGGCACTTCTAGTATCAGTGTTG
Done.