Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008357.1 Hibiscus syriacus cultivar Beakdansim tig00111096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1459476
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:786577 original size:28 final size:28
Alignment explanation
Indices: 786546--786600 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
786536 ATTTCAAAAT
*
786546 TATAATTATGAAA-AAAATATTTTTTATA
1 TATAATTAT-AAACAAAATATTTATTATA
*
786574 TATATTTATAAACAAAATATTTATTAT
1 TATAATTATAAACAAAATATTTATTAT
786601 TTAGAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (28 bp):
TATAATTATAAACAAAATATTTATTATA
Found at i:786692 original size:20 final size:19
Alignment explanation
Indices: 786653--786694 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
786643 TTTCTTTGAT
786653 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
786672 ATTAAAACAATTAATATATA
1 ATTAAAA-AATAAATAAATA
786692 ATT
1 ATT
786695 TATAAAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:786792 original size:116 final size:116
Alignment explanation
Indices: 786590--786801 Score: 270
Period size: 117 Copynumber: 1.8 Consensus size: 116
786580 TATAAACAAA
* * * *
786590 ATATTTATTATTTAGAAATATCAGAAAAGGACTTCTAGGTGCCTTAAGACTCTTTTCTTTGATAT
1 ATATTTATTATTTAGAAATATCAGAAAAGGACATCCAGGTGCCTTAAGACTCCTTTCTTTAATAT
786655 TAAAAAATAAATAAATAATTAAAACAATTAATATATAATTTATAAAATAGG
66 TAAAAAATAAATAAATAATTAAAACAATTAATATATAATTTATAAAATAGG
* * **
786706 ATATTTATTTATTTA-AAATATCAGAAAATGGACATCCCGTTGTTTTAAGACTGCCCTTTC-TTA
1 ATATTTA-TTATTTAGAAATATCAGAAAA-GGACATCCAGGTGCCTTAAGACT--CCTTTCTTTA
* *
786769 ATATT-GAAAATAAATAAAT-ATTAAAACGATTAA
62 ATATTAAAAAATAAATAAATAATTAAAACAATTAA
786802 AATAAGTTAA
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
116 33 0.40
117 37 0.45
118 7 0.09
119 5 0.06
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.37
Consensus pattern (116 bp):
ATATTTATTATTTAGAAATATCAGAAAAGGACATCCAGGTGCCTTAAGACTCCTTTCTTTAATAT
TAAAAAATAAATAAATAATTAAAACAATTAATATATAATTTATAAAATAGG
Found at i:786890 original size:3 final size:3
Alignment explanation
Indices: 786882--786917 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
786872 TTTATGGCTA
*
786882 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
786918 TAAAAGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:788277 original size:3 final size:3
Alignment explanation
Indices: 788269--788307 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
788259 ATTGATTATT
*
788269 TAA TAA TAA T-A TAA -CA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
788308 TAAGCAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 3 0.09
3 29 0.91
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:789898 original size:15 final size:15
Alignment explanation
Indices: 789829--789902 Score: 51
Period size: 15 Copynumber: 4.7 Consensus size: 15
789819 AACAAATTTA
789829 ACAAAATAAAGTAAGT
1 ACAAAATAAAGTAA-T
** *
789845 ATTAAATGAGAAATAAT
1 ACAAAAT-A-AAGTAAT
* *
789862 AAAAAATTACAATTAA-
1 ACAAAA-TA-AAGTAAT
789878 ACAAAATAAAGTAAT
1 ACAAAATAAAGTAAT
789893 ACAAAATAAA
1 ACAAAATAAA
789903 AAAAAAAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 9
0.71 0.14 0.14
Matches are distributed among these distances:
14 5 0.11
15 12 0.27
16 10 0.22
17 12 0.27
18 6 0.13
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.22
Consensus pattern (15 bp):
ACAAAATAAAGTAAT
Found at i:790053 original size:21 final size:21
Alignment explanation
Indices: 790011--790060 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
790001 GTTGTCATTA
790011 TCGTCGTCATCATCATCATCG
1 TCGTCGTCATCATCATCATCG
* *
790032 TCGTCGTCATCGTCATCTTCG
1 TCGTCGTCATCATCATCATCG
790053 TCGTCGTC
1 TCGTCGTC
790061 GTCTTGAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.12, C:0.34, G:0.18, T:0.36
Consensus pattern (21 bp):
TCGTCGTCATCATCATCATCG
Found at i:790055 original size:18 final size:18
Alignment explanation
Indices: 790010--790063 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
790000 CGTTGTCATT
* *
790010 ATCGTCGTCATCATCATC
1 ATCGTCGTCGTCATCGTC
790028 ATCGTCGTCGTCATCGTC
1 ATCGTCGTCGTCATCGTC
* *
790046 ATCTTCGTCGTCGTCGTC
1 ATCGTCGTCGTCATCGTC
790064 TTGAGCATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.13, C:0.33, G:0.19, T:0.35
Consensus pattern (18 bp):
ATCGTCGTCGTCATCGTC
Found at i:792178 original size:108 final size:109
Alignment explanation
Indices: 791928--792253 Score: 477
Period size: 108 Copynumber: 3.0 Consensus size: 109
791918 TTACAAAATA
791928 AATTC-TAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAAT-ATTTAAATTAAA
1 AATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTAAA
*
791991 TTAAAACGTTTAAAATGTTACCGTATCAG-AAAGTGTCGAGATATTT
66 TTAAAACGTTTAAAATATT---GTATCAGCAAAGTGTCGAGATATTT
*
792037 AATTCTTAATCTAAT-ATCATGCATTAAAGAAATCAACTAATTATTACTAATATAATTTAAATTA
1 AATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACT-A-ATAATTTAAATTA
792101 AATT-AAACG-TTAAAATATTGTATCAGCAAAGTGTCGAGATATTT
64 AATTAAAACGTTTAAAATATTGTATCAGCAAAGTGTCGAGATATTT
* *
792145 -ATTCTTAAGCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTAAA
1 AATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTAAA
* *
792209 TTAAAACGTTTAAAATGTTATCGTATCAGCAAAGTGTAGAGATAT
66 TTAAAACGTTTAAAA---TATTGTATCAGCAAAGTGTCGAGATAT
792254 ATGATTTTCA
Statistics
Matches: 199, Mismatches: 7, Indels: 20
0.88 0.03 0.09
Matches are distributed among these distances:
106 17 0.09
107 26 0.13
108 54 0.27
109 37 0.19
110 19 0.10
111 32 0.16
112 14 0.07
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (109 bp):
AATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTAAA
TTAAAACGTTTAAAATATTGTATCAGCAAAGTGTCGAGATATTT
Found at i:792324 original size:190 final size:186
Alignment explanation
Indices: 792089--792466 Score: 695
Period size: 190 Copynumber: 2.0 Consensus size: 186
792079 ATTACTAATA
792089 TAATTTAAATTAAATTAAACGTTAAAATATTGTATCAGCAAAGTGTCGAGATATTT-ATTCTTAA
1 TAATTTAAATTAAATTAAACGTTAAAATATTGTATCAGCAAAGTGTCGAGATATTTAATTCTTAA
792153 GCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTAAATTAAAACGT
66 GCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTAAATTAAAACG-
792218 TTAAAATGTTATCGTATCAGCAAAGTGTAGAGATATATGATTTTCATCCGAGCGAAG
130 TTAAAATGTTATCGTATCAGCAAAGTGTAGAGATATATGATTTTCATCCGAGCGAAG
792275 TAATTTAAATTAAATTAAAACGTTAAAATATTATTGTATCAGCAAAGTGTCGAGATATTTAATTC
1 TAATTTAAATTAAATT-AAACGTT-AAA-A-TATTGTATCAGCAAAGTGTCGAGATATTTAATTC
*
792340 TTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTAAATTAAA
62 TTAAGCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTAAATTAAA
792405 ACGTTAAAATGTTATCGTATCAGCAAAGTGTAGAGATATATGATTTTCATCCGAGCGAAG
127 ACGTTAAAATGTTATCGTATCAGCAAAGTGTAGAGATATATGATTTTCATCCGAGCGAAG
792465 TA
1 TA
792467 GACTGTCTTC
Statistics
Matches: 186, Mismatches: 1, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
186 16 0.09
187 7 0.04
188 3 0.02
189 1 0.01
190 88 0.47
191 71 0.38
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.35
Consensus pattern (186 bp):
TAATTTAAATTAAATTAAACGTTAAAATATTGTATCAGCAAAGTGTCGAGATATTTAATTCTTAA
GCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTAAATTAAAACGT
TAAAATGTTATCGTATCAGCAAAGTGTAGAGATATATGATTTTCATCCGAGCGAAG
Found at i:792364 original size:80 final size:80
Alignment explanation
Indices: 792195--792345 Score: 223
Period size: 79 Copynumber: 1.9 Consensus size: 80
792185 ATATTACTAA
* *
792195 TAATTTAAATTAAATTAAAACGTTTAAAATGTTATCGTATCAGCAAAGTGTAGAGATATATGATT
1 TAATTTAAATTAAATTAAAACGTTTAAAATATTATCGTATCAGCAAAGTGTAGAGATATATAATT
* *
792260 TTCATCCGAGCGAAG
66 TTAATCCGAGAGAAG
* * *
792275 TAATTTAAATTAAATTAAAACG-TTAAAATATTATTGTATCAGCAAAGTGTCGAGATATTTAATT
1 TAATTTAAATTAAATTAAAACGTTTAAAATATTATCGTATCAGCAAAGTGTAGAGATATATAATT
792339 CTTAATC
66 -TTAATC
792346 TAATAATCAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 37 0.58
80 27 0.42
ACGTcount: A:0.41, C:0.09, G:0.13, T:0.36
Consensus pattern (80 bp):
TAATTTAAATTAAATTAAAACGTTTAAAATATTATCGTATCAGCAAAGTGTAGAGATATATAATT
TTAATCCGAGAGAAG
Found at i:792525 original size:17 final size:18
Alignment explanation
Indices: 792505--792540 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
792495 GAATTATATT
792505 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
792522 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
792540 A
1 A
792541 TTATATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:792602 original size:12 final size:10
Alignment explanation
Indices: 792587--792626 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
792577 CTTAAAAAGG
*
792587 GAGAGTATTT
1 GAGAGAATTT
792597 GAGAGAAATTT
1 GAGAG-AATTT
792608 -AGAGAATTT
1 GAGAGAATTT
792617 GAGAGAATTT
1 GAGAGAATTT
792627 AGTGTGATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 5 0.19
10 18 0.67
11 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.33
Consensus pattern (10 bp):
GAGAGAATTT
Found at i:792616 original size:20 final size:19
Alignment explanation
Indices: 792588--792628 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
792578 TTAAAAAGGG
*
792588 AGAGTATTTGAGAGAAATTT
1 AGAGAATTTGAGAG-AATTT
792608 AGAGAATTTGAGAGAATTT
1 AGAGAATTTGAGAGAATTT
792627 AG
1 AG
792629 TGTGATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (19 bp):
AGAGAATTTGAGAGAATTT
Found at i:792879 original size:29 final size:29
Alignment explanation
Indices: 792834--792912 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
792824 TACTGCTACG
* *
792834 GGTGTTAAATCGGGAAATATAATATGACC
1 GGTGTTAGATCGAGAAATATAATATGACC
* *
792863 GGTGTTAGATCGAGAAATATAATCTGACT
1 GGTGTTAGATCGAGAAATATAATATGACC
* *
792892 GGTGTTAGATCAATAAATATA
1 GGTGTTAGATCGAGAAATATA
792913 CCGATTACCG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (29 bp):
GGTGTTAGATCGAGAAATATAATATGACC
Found at i:796195 original size:276 final size:277
Alignment explanation
Indices: 795660--796213 Score: 975
Period size: 276 Copynumber: 2.0 Consensus size: 277
795650 AATTCATAAA
*
795660 CACAAGCATGCTGAAGACATGGTACTAAGCAGTAGGTACATGCATGATCTAAATCAAGTGCTACC
1 CACAAGCATGCTGAAGACATGGTACTAAGCAGTAGGTACATGCATGATCTAAATCAAGAGCTACC
795725 TACTTAAGGCTTTACTGCTCTATCACTGAAGTAAGGGTCTCACGCTTCCTTTAATCCTTTGATAA
66 TACTTAAGGCTTTACTGCTCTATCACTGAAGTAAGGGTCTCACGCTTCCTTTAATCCTTTGAT-A
*
795790 GAGCCTCACCATGAGTACACCACTCAAGGGGTTTCTAACCCTAATGACTATAATTGCTACGAATT
130 GAGCCTCACCATGAGTACACCACTCAAGGGGTTTCTAACCCTAATGACTATAACTGCTACGAATT
* * * *
795855 ATCTAAATGCGACACTGATGCTCATGTGCATTATCTAAATGCAAACTTGTCCATATTGTGCATTA
195 ATCTAAATGCGACACTGATGCTCATATGCATTATCTAAATGCAAACCTATCCATATTATGCATTA
795920 ACTGAATGCACCCCTAAC
260 ACTGAATGCACCCCTAAC
* *
795938 CACAAGCATGCTGAAGACATGGTACTAAGCAGTAGGTACATGCATGATGTAGATCAAGAGCTACC
1 CACAAGCATGCTGAAGACATGGTACTAAGCAGTAGGTACATGCATGATCTAAATCAAGAGCTACC
796003 TACTTAAGGCTTTACTGCTCTATCACTGAAGTAAGGGTCTCACGCTTCCTTTAATCCTTTGAT-G
66 TACTTAAGGCTTTACTGCTCTATCACTGAAGTAAGGGTCTCACGCTTCCTTTAATCCTTTGATAG
**
796067 AGCCTCACCATGAGTACACCACTCAAGGGGTTTCTAATTCTAATGACTATAACTGCTACGAATTA
131 AGCCTCACCATGAGTACACCACTCAAGGGGTTTCTAACCCTAATGACTATAACTGCTACGAATTA
* * *
796132 TCTAAATGCGACACTGATGCTCCTATGCATTATCTGAATGCAAACCTATCCATATTATGCATTAT
196 TCTAAATGCGACACTGATGCTCATATGCATTATCTAAATGCAAACCTATCCATATTATGCATTAA
796197 CTGAATGCACCCCTAAC
261 CTGAATGCACCCCTAAC
796214 TATAATATGC
Statistics
Matches: 263, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
276 138 0.52
278 125 0.48
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (277 bp):
CACAAGCATGCTGAAGACATGGTACTAAGCAGTAGGTACATGCATGATCTAAATCAAGAGCTACC
TACTTAAGGCTTTACTGCTCTATCACTGAAGTAAGGGTCTCACGCTTCCTTTAATCCTTTGATAG
AGCCTCACCATGAGTACACCACTCAAGGGGTTTCTAACCCTAATGACTATAACTGCTACGAATTA
TCTAAATGCGACACTGATGCTCATATGCATTATCTAAATGCAAACCTATCCATATTATGCATTAA
CTGAATGCACCCCTAAC
Found at i:796238 original size:32 final size:32
Alignment explanation
Indices: 796155--796240 Score: 109
Period size: 32 Copynumber: 2.7 Consensus size: 32
796145 CTGATGCTCC
** * *
796155 TATGCATTATCTGAATGCAAACCTATCCATAT
1 TATGCATTATCTGAATGCACCCCTAACCATAA
*
796187 TATGCATTATCTGAATGCACCCCTAACTATAA
1 TATGCATTATCTGAATGCACCCCTAACCATAA
* *
796219 TATGCATCATTTGAATGCACCC
1 TATGCATTATCTGAATGCACCC
796241 TGACTAGTGT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (32 bp):
TATGCATTATCTGAATGCACCCCTAACCATAA
Found at i:798475 original size:44 final size:46
Alignment explanation
Indices: 798375--798478 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 46
798365 GGAGCATTCT
* *
798375 AACTTATTTCCTAAAACCTATGTTAGAGCTATGACCAACATTACCC
1 AACTTATTCCCTAAAACCTATGTTAGAGATATGACCAACATTACCC
* * * **
798421 AACTTATTCCCTAAGA-CTATGTTGGAGATATTACCAAC-TTTTCC
1 AACTTATTCCCTAAAACCTATGTTAGAGATATGACCAACATTACCC
798465 AACTTATTCCCTAA
1 AACTTATTCCCTAA
798479 TTTTCTCCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 18 0.35
45 19 0.37
46 14 0.27
ACGTcount: A:0.33, C:0.25, G:0.09, T:0.34
Consensus pattern (46 bp):
AACTTATTCCCTAAAACCTATGTTAGAGATATGACCAACATTACCC
Found at i:799168 original size:18 final size:17
Alignment explanation
Indices: 799140--799173 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
799130 AGAAGAAAAT
799140 AAAATTAATAAAATAAC
1 AAAATTAATAAAATAAC
799157 AAAATCTAATAAAATAA
1 AAAAT-TAATAAAATAA
799174 AATAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATTAATAAAATAAC
Found at i:799184 original size:18 final size:18
Alignment explanation
Indices: 799135--799184 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
799125 AAAAGAGAAG
799135 AAAATAAAATTAATAAAAT
1 AAAATAAAA-TAATAAAAT
**
799154 AACAA-AATCTAATAAAAT
1 AA-AATAAAATAATAAAAT
799172 AAAATAAAATAAT
1 AAAATAAAATAAT
799185 TAAACTAATC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 2 0.08
18 17 0.68
19 4 0.16
20 2 0.08
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAATAAAATAATAAAAT
Found at i:805073 original size:21 final size:21
Alignment explanation
Indices: 805047--805097 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
805037 TATAGGGTCT
805047 GTATCGATACTCTCCCTAGCA
1 GTATCGATACTCTCCCTAGCA
* *
805068 GTATCGATACTCTCCCTGGTA
1 GTATCGATACTCTCCCTAGCA
805089 GTATCGATA
1 GTATCGATA
805098 TTCCCTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (21 bp):
GTATCGATACTCTCCCTAGCA
Found at i:816250 original size:37 final size:37
Alignment explanation
Indices: 816199--816304 Score: 131
Period size: 37 Copynumber: 2.8 Consensus size: 37
816189 TAGGAAACAA
816199 ATTTTAGGTTGCAACTTATTTTTTCATATAGAAATCAG
1 ATTTTA-GTTGCAACTTATTTTTTCATATAGAAATCAG
* * *
816237 ATTTTAGTTGCAACCTAATCTTTCATATAGAAATCAG
1 ATTTTAGTTGCAACTTATTTTTTCATATAGAAATCAG
* *
816274 ATTTTAAGATGCAACCTAATTTGTTTCATAT
1 ATTTT-AGTTGCAA-CTTATTT-TTTCATAT
816305 GTCAACTTGA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
37 33 0.58
38 13 0.23
39 3 0.05
40 8 0.14
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.42
Consensus pattern (37 bp):
ATTTTAGTTGCAACTTATTTTTTCATATAGAAATCAG
Found at i:817512 original size:5 final size:5
Alignment explanation
Indices: 817411--817499 Score: 51
Period size: 5 Copynumber: 18.0 Consensus size: 5
817401 TAATATTAAA
* * * * *
817411 ATTTT ATTTT ATTTT ATGTT ATCGTA ATTTT -TTTG ATAATT -TTTT ATTTTT
1 ATTTT ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT AT-TTT ATTTT A-TTTT
* * *
817462 TTTTT ATTTT ATTTT A-TTT ATGTT ATTGT ATTTT -TTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
817500 GATAATTTTA
Statistics
Matches: 64, Mismatches: 14, Indels: 13
0.70 0.15 0.14
Matches are distributed among these distances:
4 13 0.20
5 42 0.66
6 9 0.14
ACGTcount: A:0.19, C:0.01, G:0.06, T:0.74
Consensus pattern (5 bp):
ATTTT
Found at i:817523 original size:19 final size:19
Alignment explanation
Indices: 817467--817523 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
817457 TTTTTTTTTT
*
817467 ATTTTATTTTATTTATG-TT
1 ATTTTA-TTTATTTATGATA
* *
817486 ATTGTATTT-TTTTTGATA
1 ATTTTATTTATTTATGATA
817504 ATTTTATTTATTTATGATA
1 ATTTTATTTATTTATGATA
817523 A
1 A
817524 ATGGTTTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 5 0.16
18 12 0.39
19 14 0.45
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (19 bp):
ATTTTATTTATTTATGATA
Found at i:818560 original size:3 final size:3
Alignment explanation
Indices: 818552--818585 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
818542 CTATATGCAA
* *
818552 ATG ATG ATG ATG ATG ATG ATG ACG ATG ACG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
818586 GGAGTATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (3 bp):
ATG
Found at i:820475 original size:35 final size:35
Alignment explanation
Indices: 820436--820510 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
820426 AAACTTGAAA
*
820436 TTCTCAAGAAACTTCTCATTTTATCAAACATCGAC
1 TTCTCAAGAAACTTCTCATTTGATCAAACATCGAC
** * * *
820471 TTCTCGGGAAACTTCTCCTTTGATCAAACATGGCC
1 TTCTCAAGAAACTTCTCATTTGATCAAACATCGAC
820506 TTCTC
1 TTCTC
820511 TGGAACCTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.35
Consensus pattern (35 bp):
TTCTCAAGAAACTTCTCATTTGATCAAACATCGAC
Found at i:820718 original size:15 final size:15
Alignment explanation
Indices: 820673--820720 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
820663 GGTATTGAAA
* *
820673 TTTATGTTATTTTAA
1 TTTATGTTATTATAT
* *
820688 ATTATGGTATTATAT
1 TTTATGTTATTATAT
*
820703 TTTATGTTATTGTAT
1 TTTATGTTATTATAT
820718 TTT
1 TTT
820721 CTGGACCATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (15 bp):
TTTATGTTATTATAT
Found at i:831977 original size:16 final size:16
Alignment explanation
Indices: 831958--831993 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
831948 AATGAGTGAC
*
831958 TAAATAAAAAAATCTT
1 TAAATAAAAAAATATT
*
831974 TAAATGAAAAAATATT
1 TAAATAAAAAAATATT
831990 TAAA
1 TAAA
831994 CATATAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (16 bp):
TAAATAAAAAAATATT
Found at i:832624 original size:33 final size:33
Alignment explanation
Indices: 832587--832672 Score: 120
Period size: 33 Copynumber: 2.6 Consensus size: 33
832577 AGTCCTACTT
*
832587 GGACTCAAATGC-TTCAGTTTTAGTGTTTTAATA
1 GGACTCAAATACGTTCA-TTTTAGTGTTTTAATA
*
832620 GGACTCAAATACGTTGATTTTAGTGTTTTAATA
1 GGACTCAAATACGTTCATTTTAGTGTTTTAATA
* *
832653 GGACTCAAATATGTTGATTT
1 GGACTCAAATACGTTCATTT
832673 ATTTTCTGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
33 46 0.94
34 3 0.06
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (33 bp):
GGACTCAAATACGTTCATTTTAGTGTTTTAATA
Found at i:832762 original size:19 final size:18
Alignment explanation
Indices: 832729--832764 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
832719 AAACAAAAGA
*
832729 AAAAATATTATTAATAAT
1 AAAAATATAATTAATAAT
832747 AAAAATATAATATAATAA
1 AAAAATATAAT-TAATAA
832765 AATATTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATATAATTAATAAT
Found at i:833496 original size:19 final size:19
Alignment explanation
Indices: 833472--833513 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
833462 GTGGATGGCC
*
833472 CCTTCGTCATGAAGTTGAG
1 CCTTCGTCATAAAGTTGAG
*
833491 CCTTCGTCGTAAAGTTGAG
1 CCTTCGTCATAAAGTTGAG
833510 CCTT
1 CCTT
833514 GACTTGAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (19 bp):
CCTTCGTCATAAAGTTGAG
Found at i:833527 original size:260 final size:259
Alignment explanation
Indices: 833235--833735 Score: 799
Period size: 260 Copynumber: 1.9 Consensus size: 259
833225 ATGGCCCCTC
* * * *
833235 CGTCGTGAAGTTGAGCCTTGAATTGGATATCCTTC-ATCGTGAAGTTGAAATCCAAGTAAGTT-T
1 CGTCGTAAAGTTGAGCCTTGAATTGAATATCCTTCGA-CGTAAAGTTAAAATCCAAGTAAGTTGT
*
833298 AATTGTTTCGAGTCCAATATCCTCCGTCATGAAGTTGAAATTGGCTCTGAAACTGGGAAGCCCCT
65 -ATTGTTTCGAGTCCAATATCCTCCGTCATGAAGTTGAAATTGGCTCTGAAACTAGGAAGCCCCT
* * * * *
833363 TCGTCGTGAAGTTAAGCCTCAAATGGCATGATATCCTTCGTCGTGGAGTTGAAATCGTGGATGTA
129 TCATCGTGAAGTTAAGACTCAAATGGCACGATATCCTCCGTCGTAGAGTTGAAATCGTGGATGTA
833428 TGGGTACGATATCCTCCATCGTGGAGTTGAAATCGTGGATGGCCCCTTCGTCATGAAGTTGAGCC
194 TGGGTACGATATCCTCCAT-GTGGAGTTGAAATCGTGGATGGCCCCTTCGTCATGAAGTTGAGCC
833493 TT
258 TT
* *
833495 CGTCGTAAAGTTGAGCCTTGACTTGAATATCCTTCGACGTAAAGTTAAAATCCTAGTAAGTTGTA
1 CGTCGTAAAGTTGAGCCTTGAATTGAATATCCTTCGACGTAAAGTTAAAATCCAAGTAAGTTGTA
* *
833560 TTGTTTCGAGTCCAATATCCTCCTTCGTGAAGTTGAAATTGGCTCTGAAACTAGGAAGCCCCTTC
66 TTGTTTCGAGTCCAATATCCTCCGTCATGAAGTTGAAATTGGCTCTGAAACTAGGAAGCCCCTTC
* *
833625 ATCGTGAAGTTGAGACTCAAATGGCACGATATCCTCCGTCGTAGAGTTGAAATCGTGGATGTGTG
131 ATCGTGAAGTTAAGACTCAAATGGCACGATATCCTCCGTCGTAGAGTTGAAATCGTGGATGTATG
* *
833690 GGTATGATATCCTCCGTGTGGAGTTGAAATCGTGGATGGCCCCTTC
196 GGTACGATATCCTCCATGTGGAGTTGAAATCGTGGATGGCCCCTTC
833736 ATCGTAAAGT
Statistics
Matches: 221, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
259 29 0.13
260 190 0.86
261 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (259 bp):
CGTCGTAAAGTTGAGCCTTGAATTGAATATCCTTCGACGTAAAGTTAAAATCCAAGTAAGTTGTA
TTGTTTCGAGTCCAATATCCTCCGTCATGAAGTTGAAATTGGCTCTGAAACTAGGAAGCCCCTTC
ATCGTGAAGTTAAGACTCAAATGGCACGATATCCTCCGTCGTAGAGTTGAAATCGTGGATGTATG
GGTACGATATCCTCCATGTGGAGTTGAAATCGTGGATGGCCCCTTCGTCATGAAGTTGAGCCTT
Found at i:833886 original size:206 final size:206
Alignment explanation
Indices: 833532--834015 Score: 699
Period size: 206 Copynumber: 2.4 Consensus size: 206
833522 TATCCTTCGA
* *
833532 CGTAAAGTTAAAATCCTAGTAAGTTGTATTGTTTCGAGTCCAATATCCTCCTTCGTGAAGTTGAA
1 CGTAAAGTTAAAATCCAAGTAAGTTGTATTGTTTCAAGTCCAATATCCTCCTT-GTGAAGTTGAA
* * *
833597 ATTGGCTCTGAAACTAGGAAGCCCCTTCATCGTGAAGTTGAGACTCAAATGGCACGATATCCTCC
65 ATTGGCTCTAAAACTAGGAAGCCACTTCATCGTGAAGTTGAGACTCAAATGGAACGATATCCTCC
* * * * *
833662 GTCGTAGAGTTGAAATCGTGGATGTGTGGGTATGATATCCTCC-GTGTGGAGTTGAAATCGTGGA
130 ATCGTAGAGTTAAAATCGTGGATGTGTGGGTACGATATCCTCCAGTATAGAGTTGAAATCGTGGA
833726 TGGCCCCTTCAT
195 TGGCCCCTTCAT
833738 CGTAAAGTTAAAATCCAAGTAAGTTGTATTGTTTCAAGTCCAATATCCTCCATTGTGAAGTTGAA
1 CGTAAAGTTAAAATCCAAGTAAGTTGTATTGTTTCAAGTCCAATATCCTCC-TTGTGAAGTTGAA
* *
833803 ATTGGCTCTAAAACTTA-GAAGCCACTTCGTCGTGAAGTTGAGCCTCAAATGGAACGATATCCTC
65 ATTGGCTCTAAAAC-TAGGAAGCCACTTCATCGTGAAGTTGAGACTCAAATGGAACGATATCCTC
* * * *
833867 CATCGTGGAGTTAAAATCGTGGATGTGTGGGTACGATATCCTCCATTATATAGTTGAAATTGTGG
129 CATCGTAGAGTTAAAATCGTGGATGTGTGGGTACGATATCCTCCAGTATAGAGTTGAAATCGTGG
*
833932 ATGGCCCCTTCGT
194 ATGGCCCCTTCAT
* * * * *
833945 CGTGAAGTTGAAATCCATGT-A--TGTATTGTTTCAAGTCCAATATCTTTCTCTGTGAAGTTGAA
1 CGTAAAGTTAAAATCCAAGTAAGTTGTATTGTTTCAAGTCCAATATCCTCCT-TGTGAAGTTGAA
834007 ATTGGCTCT
65 ATTGGCTCT
834016 GAATAAAATT
Statistics
Matches: 252, Mismatches: 22, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
203 1 0.00
204 46 0.18
206 157 0.62
207 48 0.19
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (206 bp):
CGTAAAGTTAAAATCCAAGTAAGTTGTATTGTTTCAAGTCCAATATCCTCCTTGTGAAGTTGAAA
TTGGCTCTAAAACTAGGAAGCCACTTCATCGTGAAGTTGAGACTCAAATGGAACGATATCCTCCA
TCGTAGAGTTAAAATCGTGGATGTGTGGGTACGATATCCTCCAGTATAGAGTTGAAATCGTGGAT
GGCCCCTTCAT
Found at i:834072 original size:66 final size:68
Alignment explanation
Indices: 833994--834139 Score: 206
Period size: 66 Copynumber: 2.2 Consensus size: 68
833984 ATATCTTTCT
** *
833994 CTGTGAAGTTGAAATTGGCTCTGAATAAAATTGGGAAGTTGTTT-GTTGACAGTCAGCCG-CCCT
1 CTGTGAAGTTGAAATTGGCTCTGAATAAAATTGAAAAGTTATTTAGTTGACAGTCAGCCGCCCCT
834057 TCG
66 TCG
* **
834060 CTGTGAAGTTGAAATTGGCTCTGAATAAAATTGAAAAGTTATTTATTTGACAGTCATTCGCCCCT
1 CTGTGAAGTTGAAATTGGCTCTGAATAAAATTGAAAAGTTATTTAGTTGACAGTCAGCCGCCCCT
834125 TCG
66 TCG
* *
834128 TTGTGGAGTTGA
1 CTGTGAAGTTGA
834140 GCTTGTGTTG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
66 41 0.59
67 12 0.17
68 17 0.24
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (68 bp):
CTGTGAAGTTGAAATTGGCTCTGAATAAAATTGAAAAGTTATTTAGTTGACAGTCAGCCGCCCCT
TCG
Found at i:834260 original size:110 final size:110
Alignment explanation
Indices: 834054--834328 Score: 451
Period size: 110 Copynumber: 2.5 Consensus size: 110
834044 AGTCAGCCGC
* * * * * *
834054 CCTTCGCTGTGAAGTTGAAATTGGCTCTGAATAAAATTGAAAAGTTATTTATTTGACAGTCATTC
1 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTT-GTTGACAGTCAGTC
* *
834119 GCCCCTTCGTTGTGGAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
65 GCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
* *
834165 CCTTCGTTGTGAAGTTGAAATTGACTCTGAAGGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCG
1 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCG
834230 CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
66 CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
834275 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTG
1 CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTG
834329 GCATTCGCCC
Statistics
Matches: 152, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
110 108 0.71
111 44 0.29
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (110 bp):
CCTTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTCAGTCG
CCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCTCGAGTCCAATAT
Found at i:836949 original size:14 final size:14
Alignment explanation
Indices: 836930--836960 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
836920 TGCGAATGAT
836930 GAGAACAAAAAAAA
1 GAGAACAAAAAAAA
836944 GAGAACAAAAAAAA
1 GAGAACAAAAAAAA
836958 GAG
1 GAG
836961 TTAGTGAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.06, G:0.19, T:0.00
Consensus pattern (14 bp):
GAGAACAAAAAAAA
Found at i:838239 original size:33 final size:33
Alignment explanation
Indices: 838202--838282 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
838192 AGTCCTACTT
*
838202 GGACTCAAGTAC-TTCAGTTTTAGTGTTTCAATA
1 GGACTCAAATACGTT-AGTTTTAGTGTTTCAATA
* *
838235 GGACTCAAATACGTTGGTTTTAGTGTTTTAATA
1 GGACTCAAATACGTTAGTTTTAGTGTTTCAATA
838268 GGACTCAAATACGTT
1 GGACTCAAATACGTT
838283 GATTTATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
33 42 0.95
34 2 0.05
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (33 bp):
GGACTCAAATACGTTAGTTTTAGTGTTTCAATA
Found at i:838283 original size:33 final size:33
Alignment explanation
Indices: 838218--838283 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
838208 AAGTACTTCA
838218 GTTTTAGTGTTTCAATAGGACTCAAATACGTTG
1 GTTTTAGTGTTTCAATAGGACTCAAATACGTTG
*
838251 GTTTTAGTGTTTTAATAGGACTCAAATACGTTG
1 GTTTTAGTGTTTCAATAGGACTCAAATACGTTG
838284 ATTTATTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (33 bp):
GTTTTAGTGTTTCAATAGGACTCAAATACGTTG
Found at i:844617 original size:20 final size:20
Alignment explanation
Indices: 844592--844640 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
844582 TAGGACATTT
*
844592 TAGATGCATGTAGTTGCATA
1 TAGATGCATGTAGCTGCATA
844612 TAGATGCATGTAGCTGCATA
1 TAGATGCATGTAGCTGCATA
*
844632 TAGTTGCAT
1 TAGATGCAT
844641 TTGTGGTGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (20 bp):
TAGATGCATGTAGCTGCATA
Found at i:844619 original size:10 final size:10
Alignment explanation
Indices: 844592--844640 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
844582 TAGGACATTT
*
844592 TAGATGCATG
1 TAGATGCATA
*
844602 TAGTTGCATA
1 TAGATGCATA
*
844612 TAGATGCATG
1 TAGATGCATA
*
844622 TAGCTGCATA
1 TAGATGCATA
*
844632 TAGTTGCAT
1 TAGATGCAT
844641 TTGTGGTGGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (10 bp):
TAGATGCATA
Found at i:856277 original size:11 final size:12
Alignment explanation
Indices: 856241--856277 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
856231 TTCTAACATG
856241 AATAGATAAT-AA
1 AATA-ATAATAAA
856253 AATAATAATAAA
1 AATAATAATAAA
856265 AATAAT-ATAAA
1 AATAATAATAAA
856276 AA
1 AA
856278 ACAATAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 12 0.50
12 12 0.50
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:860825 original size:32 final size:32
Alignment explanation
Indices: 860789--860870 Score: 119
Period size: 32 Copynumber: 2.6 Consensus size: 32
860779 CCAGATGGTA
*
860789 CATTCAGATAATGCACATTATGGTTAGGGGTG
1 CATTCAGATAATGCACATTATGGGTAGGGGTG
* * **
860821 CATTCAGATAATGCATAATATGGGTAGGTTTG
1 CATTCAGATAATGCACATTATGGGTAGGGGTG
860853 CATTCAGATAATGCACAT
1 CATTCAGATAATGCACAT
860871 AATTATCAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (32 bp):
CATTCAGATAATGCACATTATGGGTAGGGGTG
Found at i:860886 original size:32 final size:32
Alignment explanation
Indices: 860789--860898 Score: 91
Period size: 32 Copynumber: 3.4 Consensus size: 32
860779 CCAGATGGTA
* ** * * *
860789 CATTCAGATAATGCACATTATGGTTAGGGGTG
1 CATTCAGATAATGCACATAATTATCAGTGTTG
**
860821 CATTCAGATAATG--CATAA-TATGGGTAGGTTTG
1 CATTCAGATAATGCACATAATTATCAGT--G-TTG
860853 CATTCAGATAATGCACATAATTATCAGTGTTG
1 CATTCAGATAATGCACATAATTATCAGTGTTG
*
860885 CATTTAGATAATGC
1 CATTCAGATAATGC
860899 GTAGTAGTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
29 2 0.03
30 4 0.06
31 1 0.02
32 44 0.71
33 1 0.02
34 5 0.08
35 5 0.08
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.34
Consensus pattern (32 bp):
CATTCAGATAATGCACATAATTATCAGTGTTG
Found at i:863776 original size:201 final size:198
Alignment explanation
Indices: 863265--863802 Score: 607
Period size: 199 Copynumber: 2.7 Consensus size: 198
863255 GGGGCATTAC
* * * *
863265 ATTTTTACCCCGCTTATAATATCTCGTATGTGCTGATATTAGCCTCAATTGAAAGATAATTTACA
1 ATTTTTA-CCCGCTTATAATATCTCGTATGTGC-AATATTGGCCTCAA-TGAAAGATAAATTCCA
* * * * *
863330 ATACTAGGCCTCTAATCTTATAAATTACT-AAAAATTTCAGATTAACTACCCGAAAATATCCCTT
63 ATACTACGCCTTTAATCTTATAAATTA-TGAAAATTTTCAGATTAACTACCCGAAAATACCCCTC
* * * * * * * * *
863394 GAATATGTCTATCAAGTCATTTTAGTTTTTTCTTCATGCACAAAACCAGGCTTTGGAACTATTTT
127 GAACATGCCTACCAAGCCATTTTAGCTTCTTCTCCATGCACAAAACCAAGCTTTGGAACAATTTT
863459 CAACGCG
192 CAACGCG
* * *
863466 ATTTTTACCC-CTTATAATATCTCGTATGTGCCTATATTGGCCTCAACTGAAAGATAAGTTCTAA
1 ATTTTTACCCGCTTATAATATCTCGTATGTG-CAATATTGGCCTCAA-TGAAAGATAAATTCCAA
* * * **
863530 TACTACACCATTAAACTTATAAATTGCGAAAAATTTT-AGATTAACTACCCGAAAATACCCCTCG
64 TACTACGCCTTTAATCTTATAAATTATG-AAAATTTTCAGATTAACTACCCGAAAATACCCCTCG
* * *
863594 AGCATGCCTACCAAGCCATTTTAGCTTCTTCTCCATTCACAAAA-CAAGCTTTGGATCAATTTTT
128 AACATGCCTACCAAGCCATTTTAGCTTCTTCTCCATGCACAAAACCAAGCTTTGGAACAA-TTTT
*
863658 CAATGCG
192 CAACGCG
* * *
863665 ATTTTTACCTCGTTTACAATATCTCGTATGTGTCAATATTGGGCTCAATAGAAAGATAAATTCCA
1 ATTTTTACC-CGCTTATAATATCTCGTATGTG-CAATATTGGCCTCAAT-GAAAGATAAATTCCA
* * * **
863730 ATACTACGCCTTTATTCTTATAAATTATGAAAATTTTCATATTAACTTCCTAAAAATACCCCTCG
63 ATACTACGCCTTTAATCTTATAAATTATGAAAATTTTCAGATTAACTACCCGAAAATACCCCTCG
863795 AACATGCC
128 AACATGCC
863803 CATAAACACT
Statistics
Matches: 282, Mismatches: 47, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
198 12 0.04
199 145 0.51
200 21 0.07
201 104 0.37
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (198 bp):
ATTTTTACCCGCTTATAATATCTCGTATGTGCAATATTGGCCTCAATGAAAGATAAATTCCAATA
CTACGCCTTTAATCTTATAAATTATGAAAATTTTCAGATTAACTACCCGAAAATACCCCTCGAAC
ATGCCTACCAAGCCATTTTAGCTTCTTCTCCATGCACAAAACCAAGCTTTGGAACAATTTTCAAC
GCG
Found at i:872204 original size:89 final size:89
Alignment explanation
Indices: 872063--872240 Score: 347
Period size: 89 Copynumber: 2.0 Consensus size: 89
872053 TTTTGAAAAC
*
872063 TAAACAACTTTGTACTGAGAGCCGAAGCAAATGAGTCCATTTTTTGTCAAAAAAGGTATTAAAAT
1 TAAACAACTTTGTACTGAGAGCCGAAGCAAATGAGTCCATTTTTTGTCAAAAAAGGTACTAAAAT
872128 CCCCAGAGCTGCCAACGAAAGGAA
66 CCCCAGAGCTGCCAACGAAAGGAA
872152 TAAACAACTTTGTACTGAGAGCCGAAGCAAATGAGTCCATTTTTTGTCAAAAAAGGTACTAAAAT
1 TAAACAACTTTGTACTGAGAGCCGAAGCAAATGAGTCCATTTTTTGTCAAAAAAGGTACTAAAAT
872217 CCCCAGAGCTGCCAACGAAAGGAA
66 CCCCAGAGCTGCCAACGAAAGGAA
872241 GTTGAGATGT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (89 bp):
TAAACAACTTTGTACTGAGAGCCGAAGCAAATGAGTCCATTTTTTGTCAAAAAAGGTACTAAAAT
CCCCAGAGCTGCCAACGAAAGGAA
Found at i:872933 original size:12 final size:12
Alignment explanation
Indices: 872916--872941 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
872906 GAGCTATCCG
872916 TAAAAGAAGCTA
1 TAAAAGAAGCTA
872928 TAAAAGAAGCTA
1 TAAAAGAAGCTA
872940 TA
1 TA
872942 GCAACGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.19
Consensus pattern (12 bp):
TAAAAGAAGCTA
Found at i:877977 original size:20 final size:20
Alignment explanation
Indices: 877952--878012 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
877942 TTAAAATTAC
877952 AATATTAAAAATATATTAAA
1 AATATTAAAAATATATTAAA
**
877972 AATATTAATGATA-ATTATAA
1 AATATTAAAAATATATTA-AA
*
877992 AATTTTAAAAATATATTAAA
1 AATATTAAAAATATATTAAA
878012 A
1 A
878013 TTTCTATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.12
20 26 0.76
21 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AATATTAAAAATATATTAAA
Found at i:878449 original size:7 final size:7
Alignment explanation
Indices: 878437--878533 Score: 53
Period size: 7 Copynumber: 14.0 Consensus size: 7
878427 TAATTAACCT
878437 TAAATCC
1 TAAATCC
878444 TAAATCC
1 TAAATCC
878451 TAAATCC
1 TAAATCC
*
878458 TAAACCC
1 TAAATCC
*
878465 T--ATAC
1 TAAATCC
*
878470 TATAAACC
1 TA-AATCC
*
878478 ATAAACCC
1 -TAAATCC
878486 TAAA--C
1 TAAATCC
*
878491 TCAAAACC
1 T-AAATCC
878499 ATAAA-CC
1 -TAAATCC
878506 TTAAATCC
1 -TAAATCC
878514 TAAA-CC
1 TAAATCC
*
878520 TAAACCC
1 TAAATCC
878527 TAAATCC
1 TAAATCC
878534 AATTATATGA
Statistics
Matches: 72, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
5 5 0.07
6 9 0.12
7 43 0.60
8 12 0.17
9 3 0.04
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAATCC
Found at i:878456 original size:14 final size:13
Alignment explanation
Indices: 878432--878530 Score: 67
Period size: 14 Copynumber: 7.2 Consensus size: 13
878422 ATTTGTAATT
878432 AACCTTAAATCCTA
1 AACC-TAAATCCTA
878446 AATCCTAAATCCTA
1 AA-CCTAAATCCTA
* *
878460 AACCCTATA-CTATA
1 AA-CCTAAATC-CTA
*
878474 AACCATAAACCCTA
1 AACC-TAAATCCTA
*
878488 AA-CTCAAAACCATA
1 AACCT-AAATCC-TA
878502 AACCTTAAATCCTA
1 AACC-TAAATCCTA
*
878516 AACCTAAACCCTA
1 AACCTAAATCCTA
878529 AA
1 AA
878531 TCCAATTATA
Statistics
Matches: 69, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
12 1 0.01
13 19 0.28
14 39 0.57
15 9 0.13
16 1 0.01
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AACCTAAATCCTA
Found at i:878466 original size:21 final size:22
Alignment explanation
Indices: 878432--878533 Score: 92
Period size: 21 Copynumber: 4.9 Consensus size: 22
878422 ATTTGTAATT
* *
878432 AACCTTAAATCCTAAATCCTAA
1 AACCATAAACCCTAAATCCTAA
* *
878454 ATCC-TAAACCCT--ATACTATA
1 AACCATAAACCCTAAATCCTA-A
878474 AACCATAAACCCTAAA--CTCAA
1 AACCATAAACCCTAAATCCT-AA
*
878495 AACCATAAACCTTAAATCCT-A
1 AACCATAAACCCTAAATCCTAA
878516 AACC-TAAACCCTAAATCC
1 AACCATAAACCCTAAATCC
878534 AATTATATGA
Statistics
Matches: 67, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
19 5 0.07
20 17 0.25
21 38 0.57
22 4 0.06
23 3 0.04
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (22 bp):
AACCATAAACCCTAAATCCTAA
Found at i:880570 original size:14 final size:14
Alignment explanation
Indices: 880551--880578 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
880541 ATATATATAT
880551 ATATGTGCGCGCGC
1 ATATGTGCGCGCGC
880565 ATATGTGCGCGCGC
1 ATATGTGCGCGCGC
880579 GCGCATGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.21
Consensus pattern (14 bp):
ATATGTGCGCGCGC
Found at i:883537 original size:18 final size:18
Alignment explanation
Indices: 883514--883571 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
883504 AAGAAGAAGA
883514 AAGTTAATTAATGTAATC
1 AAGTTAATTAATGTAATC
* * **
883532 AAGTT-ATTTACG-AAGA
1 AAGTTAATTAATGTAATC
883548 AAGTTAATTAATGTAATC
1 AAGTTAATTAATGTAATC
883566 AAGTTA
1 AAGTTA
883572 TTTACTTACA
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
16 7 0.23
17 10 0.33
18 13 0.43
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (18 bp):
AAGTTAATTAATGTAATC
Found at i:883552 original size:34 final size:34
Alignment explanation
Indices: 883509--883576 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
883499 AGAAGAAGAA
883509 GAAGAAAGTTAATTAATGTAATCAAGTTATTTAC
1 GAAGAAAGTTAATTAATGTAATCAAGTTATTTAC
883543 GAAGAAAGTTAATTAATGTAATCAAGTTATTTAC
1 GAAGAAAGTTAATTAATGTAATCAAGTTATTTAC
883577 TTACAGAGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (34 bp):
GAAGAAAGTTAATTAATGTAATCAAGTTATTTAC
Found at i:886291 original size:30 final size:31
Alignment explanation
Indices: 886233--886299 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 31
886223 TACAAGTTGG
886233 AAAATATTTATATATTTCTTTAAAAAAATTA
1 AAAATATTTATATATTTCTTTAAAAAAATTA
*
886264 AATAATATTTATATATTT-TTT-ACAAAATTA
1 AA-AATATTTATATATTTCTTTAAAAAAATTA
886294 AAAATA
1 AAAATA
886300 AAAAAAAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
29 4 0.12
30 10 0.29
31 5 0.15
32 15 0.44
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
AAAATATTTATATATTTCTTTAAAAAAATTA
Found at i:888437 original size:3 final size:3
Alignment explanation
Indices: 888425--888476 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
888415 TTTATATTTA
888425 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
888471 ATAT TA
1 -TAT TA
888477 CAGGCCCAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.09
3 39 0.85
4 3 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:889828 original size:21 final size:21
Alignment explanation
Indices: 889800--889850 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
889790 ATTTTATTTT
*
889800 TATA-TATTTAAATTA-ATAA
1 TATATTATTTAAATCATATAA
*
889819 TAATATTATTTTAATCATATAA
1 T-ATATTATTTAAATCATATAA
889841 TATATTATTT
1 TATATTATTT
889851 GATTAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 3 0.11
21 18 0.67
22 5 0.19
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TATATTATTTAAATCATATAA
Found at i:890670 original size:14 final size:15
Alignment explanation
Indices: 890644--890676 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
890634 TTAATATTTC
890644 ATTTTACTTACAAGT
1 ATTTTACTTACAAGT
*
890659 ATTTTA-TTACAATT
1 ATTTTACTTACAAGT
890673 ATTT
1 ATTT
890677 ATTTTTATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.33, C:0.09, G:0.03, T:0.55
Consensus pattern (15 bp):
ATTTTACTTACAAGT
Found at i:892233 original size:14 final size:14
Alignment explanation
Indices: 892194--892248 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
892184 TTTACGTTTG
*
892194 TATTTACATTTACA
1 TATTTACATTTGCA
*
892208 TTTTTACATTTGCA
1 TATTTACATTTGCA
892222 TATTTACATTTGGCA
1 TATTTACATTT-GCA
* *
892237 TCTTTGCATTTG
1 TATTTACATTTG
892249 TATTTTCATG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
14 23 0.66
15 12 0.34
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.53
Consensus pattern (14 bp):
TATTTACATTTGCA
Found at i:899458 original size:54 final size:52
Alignment explanation
Indices: 899353--899504 Score: 184
Period size: 54 Copynumber: 2.9 Consensus size: 52
899343 AGAAATCTTG
* *
899353 GCAGAAACCACA-AAATGATGAATGTGTTGTC-AACGCTTTACGAACATCTGA
1 GCAGAAACCACAGAAA-GATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
*
899404 GCAGAAACCACATGAAAGGATGAATTTGTTGTCAAATGTTTTACGAACATCTGA
1 GCAGAAACCACA-GAAA-GATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
* * *
899458 GCAGAAGCCACAGGAAAG-TGAATGCGCTGTCAAATGTTTTTACGAAC
1 GCAGAAACCACA-GAAAGATGAATGTGTTGTCAAATG-TTTTACGAAC
899505 CTGCTATTCT
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
51 12 0.14
52 15 0.17
53 28 0.32
54 33 0.38
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (52 bp):
GCAGAAACCACAGAAAGATGAATGTGTTGTCAAATGTTTTACGAACATCTGA
Found at i:899892 original size:21 final size:22
Alignment explanation
Indices: 899863--899916 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
899853 ATCTACACTC
*
899863 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGACAGATTCCCTT
*
899885 TT-AAAGATGACAGATTCTCTT
1 TTCAAAGATGACAGATTCCCTT
*
899906 TTCAAATATGA
1 TTCAAAGATGA
899917 AAGCTTTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCCCTT
Found at i:900694 original size:112 final size:113
Alignment explanation
Indices: 900337--900823 Score: 678
Period size: 112 Copynumber: 4.4 Consensus size: 113
900327 ATTTCTGGAA
*
900337 GAGTTCATAAT---AAGAACTCATCTAAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* *
900399 CAACTTTTTGCTCGAA-T--TCATTTGATGGATCAGCATTACCAGGTC
66 CAACTTTTCGCTCGAATTCATCATTTGATGGATCAGCATTACCAGGGC
* *
900444 AAGTTCATAATGAGAAGAACTCATCTG-AGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* * *
900508 CAAC-TTTCGCTTGAATTCATCA-TTGATGGATCAGCATTACTAGGTC
66 CAACTTTTCGCTCGAATTCATCATTTGATGGATCAGCATTACCAGGGC
* *
900554 AAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
*
900619 CAACTTTTCGCT-GAATTCATCATTTGATGGATCAGCATTGCCAGGGC
66 CAACTTTTCGCTCGAATTCATCATTTGATGGATCAGCATTACCAGGGC
900666 GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
* * * * * * * * * *
900731 CAACTTTTTGCTCAAATTCATCACTCGATAGATCAACTTTTCCAGAGA
66 CAACTTTTCGCTCGAATTCATCATTTGATGGATCAGCATTACCAGGGC
*
900779 GAGTT--TAATGAGAAGAA--CATCTGAAGAAGGAAGAAGAAGTTCATA
1 GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATA
900824 GAAGAACTTG
Statistics
Matches: 346, Mismatches: 24, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
107 10 0.03
108 9 0.03
109 68 0.20
110 62 0.18
111 64 0.18
112 102 0.29
113 31 0.09
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (113 bp):
GAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTT
CAACTTTTCGCTCGAATTCATCATTTGATGGATCAGCATTACCAGGGC
Found at i:900703 original size:220 final size:221
Alignment explanation
Indices: 900348--900844 Score: 662
Period size: 220 Copynumber: 2.3 Consensus size: 221
900338 AGTTCATAAT
* * *
900348 AAGAACTCATCTAAAGAAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTTGCTCG
1 AAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTCG
*
900413 AATTCATTTGATGGATCAGCATTACCAGGTCAAGTTCATAATGAGAAGAACTCATCT-G-AGAAG
66 AATTCATTTGATGGATCAGCATTACCAGGGCAAGTTCATAATGAGAAGAACTCATCTAGAAGAA-
** * *
900476 GAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAAC-TTTCGCTTGAATTCATCA-TTGATGGAT
130 GAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTCGCTCAAATTCATCACTCGATAGAT
* *
900539 CAGCATTACTAG-GTCA-AGTTCATAATGAG
195 CAACATTACCAGAG--AGAGTT--TAATGAG
900568 AAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCT-G
1 AAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTCG
* *
900632 AATTCATCATTTGATGGATCAGCATTGCCAGGGCGAGTTCATAATGAGAAGAACTCATCT-GAAG
66 AA-T--TCATTTGATGGATCAGCATTACCAGGGCAAGTTCATAATGAGAAGAACTCATCTAGAAG
*
900696 AAAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTTGCTCAAATTCATCACTCGATA
128 -AAGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTCGCTCAAATTCATCACTCGATA
* *
900761 GATCAACTTTTCCAGAGAGAGTTTAATGAG
192 GATCAACATTACCAGAGAGAGTTTAATGAG
*
900791 AAGAA--CATCTGAAGAAGGAAGAAGAAGTTC---AT-AGAAGAACTTGTTCAATCTTTT
1 AAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTT
900845 GCATGATTCT
Statistics
Matches: 251, Mismatches: 16, Indels: 22
0.87 0.06 0.08
Matches are distributed among these distances:
217 16 0.06
218 7 0.03
219 3 0.01
220 61 0.24
221 24 0.10
222 52 0.21
223 50 0.20
224 18 0.07
225 19 0.08
226 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (221 bp):
AAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTCG
AATTCATTTGATGGATCAGCATTACCAGGGCAAGTTCATAATGAGAAGAACTCATCTAGAAGAAG
AAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACTTTTCGCTCAAATTCATCACTCGATAGATC
AACATTACCAGAGAGAGTTTAATGAG
Found at i:901113 original size:3 final size:3
Alignment explanation
Indices: 901107--901164 Score: 98
Period size: 3 Copynumber: 19.0 Consensus size: 3
901097 TTTTATTTAA
*
901107 TAT TAT TAT TTT TAT TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
901153 TAT TAT TAT TAT
1 TAT TAT TAT TAT
901165 ATATACAGGC
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:902217 original size:128 final size:126
Alignment explanation
Indices: 901984--902217 Score: 294
Period size: 128 Copynumber: 1.8 Consensus size: 126
901974 AAATTTATAA
* * * * * *
901984 TAATGTTTATTATTTTTTAATATCAAAGAAAAGGGCAGTCTTAAAGCAACTAGATTGTTTTCTGA
1 TAATATTTATTATATTTTAATATCAAAGAAAAGAGCAGTCTTAAAACAACTAGACTCTTTTCTGA
* *
902049 TATTTTAAATAAATAATATTTTACTTTTATTGTATATTAATCTATTTTTTAGATAAATGTTT
66 TATTTTAAATAAATAATATCTTAC-TTTATTATATATTAATCTATTTTTTAGATAAATGTTT
* * *
902111 TAATATTTATTTATATTTTAATATCAAAGGAAAGAGCTGTCTTAAAACACCTAGAAGCTCTTTTC
1 TAATATTTA-TTATATTTTAATATCAAAGAAAAGAGCAGTCTTAAAACAACTAG-A-CTCTTTTC
902176 TGATATTTCTAAATAAATAAATATCTTA-TTTA-TATA-ATTAAT
63 TGATATTT-TAAATAAAT-AATATCTTACTTTATTATATATTAAT
902218 AAATTTACTT
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
127 8 0.09
128 44 0.48
129 4 0.04
130 18 0.20
131 9 0.10
132 8 0.09
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (126 bp):
TAATATTTATTATATTTTAATATCAAAGAAAAGAGCAGTCTTAAAACAACTAGACTCTTTTCTGA
TATTTTAAATAAATAATATCTTACTTTATTATATATTAATCTATTTTTTAGATAAATGTTT
Found at i:903184 original size:15 final size:14
Alignment explanation
Indices: 903151--903196 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
903141 CTCAATTAAT
903151 TTTATGTTCGTTCG
1 TTTATGTTCGTTCG
* *
903165 TTTATGTTTGTTTTG
1 TTTATGTTCG-TTCG
*
903180 TTTATGTTCGTCCG
1 TTTATGTTCGTTCG
903194 TTT
1 TTT
903197 GTTTTAGTAC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.07, C:0.11, G:0.20, T:0.63
Consensus pattern (14 bp):
TTTATGTTCGTTCG
Found at i:904873 original size:21 final size:21
Alignment explanation
Indices: 904849--904889 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
904839 AATGTTACTT
*
904849 CTCTCTCTGCTTCTATCGCTG
1 CTCTATCTGCTTCTATCGCTG
*
904870 CTCTATCTGCTTCTCTCGCT
1 CTCTATCTGCTTCTATCGCT
904890 TCAGCTTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.39, G:0.12, T:0.44
Consensus pattern (21 bp):
CTCTATCTGCTTCTATCGCTG
Found at i:909311 original size:21 final size:22
Alignment explanation
Indices: 909287--909330 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
909277 GGCTTAAAAT
*
909287 CACCCAAAAATAACCCC-AAAC
1 CACCCAAAAACAACCCCGAAAC
909308 CACCCAAAAACAACCCCGAAAC
1 CACCCAAAAACAACCCCGAAAC
909330 C
1 C
909331 TTTCGGTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.50, C:0.45, G:0.02, T:0.02
Consensus pattern (22 bp):
CACCCAAAAACAACCCCGAAAC
Found at i:910325 original size:19 final size:19
Alignment explanation
Indices: 910301--910344 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
910291 ATAGGATACA
910301 TCCACCGATAGAAAACTAG
1 TCCACCGATAGAAAACTAG
910320 TCCACCGATAGAAAACTAG
1 TCCACCGATAGAAAACTAG
910339 TCCACC
1 TCCACC
910345 AACTTTAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.39, C:0.32, G:0.14, T:0.16
Consensus pattern (19 bp):
TCCACCGATAGAAAACTAG
Found at i:915699 original size:41 final size:40
Alignment explanation
Indices: 915607--915841 Score: 141
Period size: 41 Copynumber: 5.7 Consensus size: 40
915597 CGAGTCTTTA
* * *
915607 GCGGCGTTTGTATAAAAACGCCACTATAGA-TAATCTTATT
1 GCGGCATTTGTATAAAAACGCCACTAAAGACTACTC-TATT
* *
915647 GTGGCATTTTGTATAAAAACGCCGCTAAAGCACTACTCTATT
1 GCGGCA-TTTGTATAAAAACGCCACTAAAG-ACTACTCTATT
* * * *
915689 GCGGCATTTGT-TGAAAAAACGCCACTATATATTAACCCTATT
1 GCGGCATTTGTAT--AAAAACGCCACTAAAGACT-ACTCTATT
* * * * * *
915731 GCGTCATTTGTATAACAACGCCGCTACGATACTTCTCTATT
1 GCGGCATTTGTATAAAAACGCCACTA-AAGACTACTCTATT
** ** * * * *
915772 GCGGTGTTTGTATTCCAAACGACACTATAGATTATCCCTATT
1 GCGGCATTTGTA-TAAAAACGCCACTAAAGACTA-CTCTATT
* * *
915814 GCTGCATTTTTATAAAAACGCCGCTAAA
1 GCGGCATTTGTATAAAAACGCCACTAAA
915842 TTTACCATTT
Statistics
Matches: 145, Mismatches: 40, Indels: 19
0.71 0.20 0.09
Matches are distributed among these distances:
40 5 0.03
41 68 0.47
42 67 0.46
43 5 0.03
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (40 bp):
GCGGCATTTGTATAAAAACGCCACTAAAGACTACTCTATT
Found at i:915742 original size:83 final size:84
Alignment explanation
Indices: 915607--915841 Score: 239
Period size: 83 Copynumber: 2.8 Consensus size: 84
915597 CGAGTCTTTA
* * * * *
915607 GCGGCGTTTGTAT-AAAAACGCCACTATAGA-TAATCTTATTGTGGCATTTTGTATAAAAACGCC
1 GCGGCATTTGTATAAAAAACGCCACTATAGATTAACCCTATTGCGTCA-TTTGTATAAAAACGCC
915670 GCTAAAG-CACTACTCTATT
65 GCTAAAGACACTACTCTATT
* *
915689 GCGGCATTTGT-TGAAAAAACGCCACTATATATTAACCCTATTGCGTCATTTGTATAACAACGCC
1 GCGGCATTTGTAT-AAAAAACGCCACTATAGATTAACCCTATTGCGTCATTTGTATAAAAACGCC
* * *
915753 GCT-ACGATACTTCTCTATT
65 GCTAAAGACACTACTCTATT
** *** * * *
915772 GCGGTGTTTGTATTCCAAACGACACTATAGATTATCCCTATTGC-TGCATTTTTATAAAAACGCC
1 GCGGCATTTGTATAAAAAACGCCACTATAGATTAACCCTATTGCGT-CATTTGTATAAAAACGCC
915836 GCTAAA
65 GCTAAA
915842 TTTACCATTT
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
81 1 0.01
82 13 0.10
83 97 0.78
84 14 0.11
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (84 bp):
GCGGCATTTGTATAAAAAACGCCACTATAGATTAACCCTATTGCGTCATTTGTATAAAAACGCCG
CTAAAGACACTACTCTATT
Found at i:915859 original size:20 final size:20
Alignment explanation
Indices: 915836--915877 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
915826 TAAAAACGCC
915836 GCTAAATTTACCATTTTATG
1 GCTAAATTTACCATTTTATG
* *
915856 GCTAAATTTACCCTTTTGTG
1 GCTAAATTTACCATTTTATG
915876 GC
1 GC
915878 ATTTAGAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (20 bp):
GCTAAATTTACCATTTTATG
Found at i:917907 original size:75 final size:74
Alignment explanation
Indices: 917782--917946 Score: 224
Period size: 75 Copynumber: 2.2 Consensus size: 74
917772 TTGCTCAGAG
** *
917782 GGAACCGATTCCCCCCTAAATGGTTTTGGCCCCGAGATTTCCAAAATGCTCGGAGGGAACCGATT
1 GGAACCGATT-CCCCCTAAACAGTTTTGGCCCCGAGAATTCCAAAATGCTCGGAGGGAACCGA-T
917847 CCCCCCATAGGA
64 CCCCCCA-AGGA
* **
917859 GGAACCGATTCCCCCTAAACAGTTTT-GCTCCGAGAATTCCAGTATGCTCGGAGGGAACCGATCC
1 GGAACCGATTCCCCCTAAACAGTTTTGGCCCCGAGAATTCCAAAATGCTCGGAGGGAACCGATCC
*
917923 CCCCAAGGG
66 CCCCAAGGA
*
917932 GGTACCGATTCCCCC
1 GGAACCGATTCCCCC
917947 CTTGTACAAC
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
73 17 0.21
74 8 0.10
75 31 0.39
76 14 0.17
77 10 0.12
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.20
Consensus pattern (74 bp):
GGAACCGATTCCCCCTAAACAGTTTTGGCCCCGAGAATTCCAAAATGCTCGGAGGGAACCGATCC
CCCCAAGGA
Found at i:924160 original size:18 final size:19
Alignment explanation
Indices: 924137--924173 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
924127 TAAAAAAAAA
*
924137 TGTGTTTT-TTTAAATTAT
1 TGTGTTTTGATTAAATTAT
924155 TGTGTTTTGATTAAATTAT
1 TGTGTTTTGATTAAATTAT
924174 GTTGTTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (19 bp):
TGTGTTTTGATTAAATTAT
Found at i:925687 original size:17 final size:17
Alignment explanation
Indices: 925665--925699 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
925655 TTTCAACATT
925665 TTTGATATTT-TGGATTG
1 TTTGAT-TTTGTGGATTG
925682 TTTGATTTTGTGGATTG
1 TTTGATTTTGTGGATTG
925699 T
1 T
925700 AGGATTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.14, C:0.00, G:0.26, T:0.60
Consensus pattern (17 bp):
TTTGATTTTGTGGATTG
Found at i:925705 original size:17 final size:17
Alignment explanation
Indices: 925675--925708 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
925665 TTTGATATTT
**
925675 TGGATTGTTTGATTTTG
1 TGGATTGTAGGATTTTG
925692 TGGATTGTAGGATTTTG
1 TGGATTGTAGGATTTTG
925709 GATTTATGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.32, T:0.53
Consensus pattern (17 bp):
TGGATTGTAGGATTTTG
Found at i:926467 original size:76 final size:77
Alignment explanation
Indices: 926295--926503 Score: 287
Period size: 76 Copynumber: 2.7 Consensus size: 77
926285 CAAAGCCAAA
* * * **
926295 AATTACAGATTGCTCAGAGGGAACCGATTTCCCCCCATAGGAGGAACCGATTCCCCCCTAAATGG
1 AATTCCAGAATGCTCGGAGGGAACCGA-TTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAG
*
926360 TTTTGGCCCCGAG
65 TTTTGACCCCGAG
*
926373 ATTTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
* *
926438 TTT-ACTCCTAG
66 TTTGACCCCGAG
* * *
926449 AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCC
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCC
926504 TTGTACAACG
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
75 17 0.14
76 39 0.33
77 39 0.33
78 23 0.19
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.20
Consensus pattern (77 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
TTTGACCCCGAG
Found at i:929000 original size:21 final size:21
Alignment explanation
Indices: 928976--929017 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
928966 AGTTTATTTT
928976 TAAACTTTATTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
*
928997 TAAACTTTGTTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
929018 AACTTGAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (21 bp):
TAAACTTTATTTCAATTATCG
Found at i:929065 original size:33 final size:33
Alignment explanation
Indices: 929012--929114 Score: 156
Period size: 33 Copynumber: 3.2 Consensus size: 33
929002 TTTGTTTCAA
929012 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
*
929044 TTATCGAACTTGGAAGTTTTTAAGAATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
929077 TTATCAAACTTGGAAGTATTTAAGTATTTCAA-
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
929109 TTATCG
1 TTATCG
929115 TAAACTTTGT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 16 0.25
33 48 0.75
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.44
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:932299 original size:22 final size:24
Alignment explanation
Indices: 932269--932318 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 24
932259 TAACTTAAAA
*
932269 TTTTAAAGATTTAA-ATTA-ATTT
1 TTTTAAAGAGTTAATATTATATTT
* *
932291 TTTTGAAGAGTTAATTTTATATTT
1 TTTTAAAGAGTTAATATTATATTT
932315 TTTT
1 TTTT
932319 CAAAATAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 12 0.52
23 3 0.13
24 8 0.35
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (24 bp):
TTTTAAAGAGTTAATATTATATTT
Found at i:932386 original size:27 final size:27
Alignment explanation
Indices: 932352--932404 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
932342 CTAACTAAAT
932352 TTTTTGAAAATTTAAAAGTTTGGGGAA
1 TTTTTGAAAATTTAAAAGTTTGGGGAA
*
932379 TTTTTGAAAATTTAGAAGTTTGGGGA
1 TTTTTGAAAATTTAAAAGTTTGGGGA
932405 CATGGTTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.42
Consensus pattern (27 bp):
TTTTTGAAAATTTAAAAGTTTGGGGAA
Found at i:936934 original size:277 final size:278
Alignment explanation
Indices: 936421--936976 Score: 1073
Period size: 277 Copynumber: 2.0 Consensus size: 278
936411 ATATTTGATA
936421 TCTCATCACATTGCACAAATATTAATGATCATTATGATTTTCCATTACTGCATTCTGCCGTTATT
1 TCTCATCACATTGCACAAATATTAATGATCATTATGATTTTCCATTACTGCATTCTGCCGTTATT
936486 ATCAACGCCGTTTTCTTGTCTAATTCTTTCCCTGGCTTCAGTCGAGGACTGATAAAAAGCATGTT
66 ATCAACGCCGTTTTCTTGTCTAATTCTTTCCCTGGCTTCAGTCGAGGACTGATAAAAAGCATGTT
936551 ACGGAAAAATCCAGAATTAGACCAAGTGTATGTTTCTTTTCCCTTCATATCTTATCTTATACCAC
131 ACGGAAAAATCCAGAATTAGACCAAGTGTATGTTTCTTTTCCCTTCATATCTTATCTTATACCAC
936616 TTCAAAGAAGCATGAGGATATATCTACAAGGCCAATAGAATGTAACATTAAAATAAAAGGGGTAG
196 TTCAAAGAAGCATGAGGATATATCTACAAGGCCAATAGAATGTAACATTAAAATAAAAGGGGTAG
936681 TGCCGGATGTATTGCTAG
261 TGCCGGATGTATTGCTAG
936699 TCTCATCACATTGCAC-AA-ATTAATGATCATTATGATTTTCCATTACTGCATTCTGCCGTTATT
1 TCTCATCACATTGCACAAATATTAATGATCATTATGATTTTCCATTACTGCATTCTGCCGTTATT
936762 ATCAACGCCGTTTTCTTGTCTAATTCTTTTCCCTGGCTTCAGTCGAGGACTGATAAAAAGCATGT
66 ATCAACGCCGTTTTCTTGTCTAATTC-TTTCCCTGGCTTCAGTCGAGGACTGATAAAAAGCATGT
936827 TACGG-AAAATCCAGAACTTAGACCAAGTGTATGTTTCTTTTCCCTTCATATCTTATCTTATACC
130 TACGGAAAAATCCAGAA-TTAGACCAAGTGTATGTTTCTTTTCCCTTCATATCTTATCTTATACC
936891 ACTTCAAAGAAGCATGAGGATATATCTACAAGGCCAATAGAATGTAACATTAAAATAAAAGGGGT
194 ACTTCAAAGAAGCATGAGGATATATCTACAAGGCCAATAGAATGTAACATTAAAATAAAAGGGGT
936956 AGTGCCGGATGTATTGCTAG
259 AGTGCCGGATGTATTGCTAG
936976 T
1 T
936977 ATTTTACTTT
Statistics
Matches: 276, Mismatches: 0, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
276 82 0.30
277 178 0.64
278 16 0.06
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (278 bp):
TCTCATCACATTGCACAAATATTAATGATCATTATGATTTTCCATTACTGCATTCTGCCGTTATT
ATCAACGCCGTTTTCTTGTCTAATTCTTTCCCTGGCTTCAGTCGAGGACTGATAAAAAGCATGTT
ACGGAAAAATCCAGAATTAGACCAAGTGTATGTTTCTTTTCCCTTCATATCTTATCTTATACCAC
TTCAAAGAAGCATGAGGATATATCTACAAGGCCAATAGAATGTAACATTAAAATAAAAGGGGTAG
TGCCGGATGTATTGCTAG
Found at i:939845 original size:2 final size:2
Alignment explanation
Indices: 939840--939882 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
939830 TTTAAGGTAA
939840 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
939881 AT
1 AT
939883 TAATAACATA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:940053 original size:73 final size:73
Alignment explanation
Indices: 939920--940055 Score: 193
Period size: 73 Copynumber: 1.9 Consensus size: 73
939910 GACGATAAAA
** * *
939920 AAAAATTTTAGGGTGGACACCGTCTGTAAATAAGTAACTAATAGAAGAAAACTCATATTTCAGAA
1 AAAAATTTTAGGGTGGACACAATCAGTAAATAAGTAACTAATAGAAGAAAACTCAGATTTCAGAA
939985 TGGGTACG
66 TGGGTACG
* * *
939993 AAAAATTTTAGGGTGGACACAATCAGTAAAATAA-TAACTAATTGAAGAAAATTCGGATTTCAG
1 AAAAATTTTAGGGTGGACACAATCAGT-AAATAAGTAACTAATAGAAGAAAACTCAGATTTCAG
940056 GGTGGGCACG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 49 0.89
74 6 0.11
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.26
Consensus pattern (73 bp):
AAAAATTTTAGGGTGGACACAATCAGTAAATAAGTAACTAATAGAAGAAAACTCAGATTTCAGAA
TGGGTACG
Found at i:941055 original size:3 final size:3
Alignment explanation
Indices: 941043--941092 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
941033 AAAATATTAG
*
941043 ATT A-T ATT ATT ATT ATT A-T ATT ATT ATT ATT AATA ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
941086 AATT ATT
1 -ATT ATT
941093 TTGCAAGACC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
2 6 0.15
3 29 0.73
4 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:941062 original size:14 final size:13
Alignment explanation
Indices: 941043--941092 Score: 66
Period size: 14 Copynumber: 3.8 Consensus size: 13
941033 AAAATATTAG
941043 ATTATATTATTATT
1 ATTA-ATTATTATT
941057 ATTATATTATTATT
1 ATTA-ATTATTATT
*
941071 ATTAATAATTA-T
1 ATTAATTATTATT
941083 ATTAATTATT
1 ATTAATTATT
941093 TTGCAAGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
12 10 0.29
13 6 0.18
14 18 0.53
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTAATTATTATT
Found at i:943301 original size:18 final size:17
Alignment explanation
Indices: 943262--943294 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
943252 ACCTTTTTCC
*
943262 TTTAATTTTTATTTTAT
1 TTTACTTTTTATTTTAT
943279 TTTACTTTTT-TTTTAT
1 TTTACTTTTTATTTTAT
943295 CATTTACATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTACTTTTTATTTTAT
Found at i:945241 original size:14 final size:13
Alignment explanation
Indices: 945209--945252 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
945199 ACAAAAAGAG
945209 AAAAGAAGAAAAAA
1 AAAAG-AGAAAAAA
*
945223 TAAAGAGAAAATAA
1 AAAAGAGAAAA-AA
945237 AAAAGAGAAACAAA
1 AAAAGAGAAA-AAA
945251 AA
1 AA
945253 CAAATGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 6 0.23
14 19 0.73
15 1 0.04
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.05
Consensus pattern (13 bp):
AAAAGAGAAAAAA
Found at i:945251 original size:13 final size:12
Alignment explanation
Indices: 945209--945277 Score: 50
Period size: 12 Copynumber: 5.5 Consensus size: 12
945199 ACAAAAAGAG
945209 AAAAGAAGAAAAA
1 AAAAG-AGAAAAA
945222 ATAAAGAGAAAATAA
1 A-AAAGAG-AAA-AA
*
945237 AAAAGAGAAACA
1 AAAAGAGAAAAA
* **
945249 AAAACA-AATGA
1 AAAAGAGAAAAA
*
945260 AAAAGAGAAGAA
1 AAAAGAGAAAAA
945272 AAAAGA
1 AAAAGA
945278 CAAGAGCACA
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
11 8 0.18
12 15 0.33
13 6 0.13
14 13 0.29
15 3 0.07
ACGTcount: A:0.77, C:0.03, G:0.16, T:0.04
Consensus pattern (12 bp):
AAAAGAGAAAAA
Found at i:945274 original size:35 final size:35
Alignment explanation
Indices: 945201--945277 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
945191 CAATCAGAAC
* *
945201 AAAAAGAGAAAAGAAGAAAAAATAAAGAGAAAATA
1 AAAAAGAGAAAAGAAGAAAAAATAAAAAGAAAAGA
* *
945236 AAAAAGAGAAACA-AA-AACAAATGAAAAAGAGAAGA
1 AAAAAGAGAAA-AGAAGAAAAAAT-AAAAAGAAAAGA
945271 AAAAAGA
1 AAAAAGA
945278 CAAGAGCACA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
34 6 0.17
35 29 0.81
36 1 0.03
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.04
Consensus pattern (35 bp):
AAAAAGAGAAAAGAAGAAAAAATAAAAAGAAAAGA
Found at i:946389 original size:32 final size:32
Alignment explanation
Indices: 946320--946396 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
946310 ATGAGGAACA
946320 ATTGGGGCATCTTTGAAGATTCAACATCAAAT
1 ATTGGGGCATCTTTGAAGATTCAACATCAAAT
* **
946352 GTTGGGGCATCTTATG-AGATTCAACATTGAAT
1 ATTGGGGCATCTT-TGAAGATTCAACATCAAAT
946384 ATT-GGG-ATCTTTG
1 ATTGGGGCATCTTTG
946397 GGAATTCAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 2 0.05
30 5 0.12
31 3 0.08
32 28 0.70
33 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (32 bp):
ATTGGGGCATCTTTGAAGATTCAACATCAAAT
Found at i:946729 original size:64 final size:64
Alignment explanation
Indices: 946620--946924 Score: 454
Period size: 64 Copynumber: 4.8 Consensus size: 64
946610 GTGAAGGGTA
*
946620 TTTC-AGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAACAAATAAC
1 TTTCTAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAACAAACAAC
** *
946683 TTTCTAGTTTCATTCAGAGTCAATTTCAACTTCTTAGCGAATGATATTGGACTCAACAAACAAC
1 TTTCTAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAACAAACAAC
* *
946747 TTTCTATTTTCATTCAGAGTCAATTTCAACTTCACATCGAAGGATATT-GACTCAACAAACAAC
1 TTTCTAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAACAAACAAC
* * * * *
946810 TTTCTATTTTCATTCAGATTCAATTTCAACTTTACAACGAAGGATATTGGACTCAACAAATAAC
1 TTTCTAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAACAAACAAC
* * *
946874 TTT-TCAGTTTCATTCAGAGTTAATTTCAACTTCACAACGAAGTATATTGGA
1 TTTCT-AGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGA
946925 TTCGAAACAA
Statistics
Matches: 221, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
63 65 0.29
64 156 0.71
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (64 bp):
TTTCTAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAACAAACAAC
Found at i:946856 original size:127 final size:127
Alignment explanation
Indices: 946620--946922 Score: 457
Period size: 127 Copynumber: 2.4 Consensus size: 127
946610 GTGAAGGGTA
* *
946620 TTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAACAAATAACTT
1 TTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATT-GACTCAACAAACAACTT
* * *
946685 TCTAGTTTCATTCAGAGTCAATTTCAACTTCTTAGCGAATGATATTGGACTCAACAAACAAC-
65 TCTAGTTTCATTCAGAGTCAATTTCAACTTCTCAACGAAGGATATTGGACTCAACAAACAACT
* *
946747 TTTCTATTTTCATTCAGAGTCAATTTCAACTTCACATCGAAGGATATTGACTCAACAAACAACTT
1 TTTC-AGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGACTCAACAAACAACTT
* * *
946812 TCTATTTTCATTCAGATTCAATTTCAACTT-TACAACGAAGGATATTGGACTCAACAAATAACT
65 TCTAGTTTCATTCAGAGTCAATTTCAACTTCT-CAACGAAGGATATTGGACTCAACAAACAACT
* *
946875 TTTCAGTTTCATTCAGAGTTAATTTCAACTTCACAACGAAGTATATTG
1 TTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTG
946923 GATTCGAAAC
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
126 1 0.01
127 114 0.71
128 45 0.28
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.35
Consensus pattern (127 bp):
TTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGACTCAACAAACAACTTT
CTAGTTTCATTCAGAGTCAATTTCAACTTCTCAACGAAGGATATTGGACTCAACAAACAACT
Found at i:947426 original size:156 final size:156
Alignment explanation
Indices: 947142--947474 Score: 479
Period size: 156 Copynumber: 2.1 Consensus size: 156
947132 AGATTGGATT
* * * ** *
947142 TCAACTTCACAGCGAAGGAGCGTCTGTCAACAAATAACTTTCCAGTTTCATTCAGAGTTAATTTT
1 TCAACTTCACAGCGAAGGAGCGTATGTCAACAAACAACTTCCCAGTTTCATTCAGAGCCAATTTC
* * * *
947207 AACTTCACAGTGAAGGATATTGGACTTGAAAAAATGCAACTTACACAAGATTGAATTTTAACTTA
66 AACTTCACAGTGAAGGATATTAGACTCGAAAAAATACAACTTACACAAGATTGAATTTCAACTTA
* * *
947272 ACGACGAATGATATCCAATTCAAAGC
131 ACAACGAAAGATATCAAATTCAAAGC
*
947298 TCAACTTCACAGCGAAGGAGCGTATGTCAACAAACAACTTCCCAGTTTCATTCGGAGCCAATTTC
1 TCAACTTCACAGCGAAGGAGCGTATGTCAACAAACAACTTCCCAGTTTCATTCAGAGCCAATTTC
* *
947363 AACTTCATAGTGAAGGATATTAGACTCGAAACAATACAACTTACACAAGATT-AGATTTCAACTT
66 AACTTCACAGTGAAGGATATTAGACTCGAAAAAATACAACTTACACAAGATTGA-ATTTCAACTT
*
947427 CACAACGAAAGATATCAAATTCAAAGC
130 AACAACGAAAGATATCAAATTCAAAGC
* *
947454 TCAACTTTACAGCGAATGAGC
1 TCAACTTCACAGCGAAGGAGC
947475 CATCCACGAT
Statistics
Matches: 157, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
155 1 0.01
156 156 0.99
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (156 bp):
TCAACTTCACAGCGAAGGAGCGTATGTCAACAAACAACTTCCCAGTTTCATTCAGAGCCAATTTC
AACTTCACAGTGAAGGATATTAGACTCGAAAAAATACAACTTACACAAGATTGAATTTCAACTTA
ACAACGAAAGATATCAAATTCAAAGC
Found at i:947736 original size:85 final size:84
Alignment explanation
Indices: 947593--947848 Score: 325
Period size: 85 Copynumber: 3.0 Consensus size: 84
947583 TATAACATAG
* * * * *
947593 CTCAAGGTGATAAGGGCTATCTGTCAACTAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGAC
1 CTCAAGGCGAGAAGGGCTATCTGTC-ACAAAGACCTTTGAGTTCGATTACATTCAGCTCAAAGGC
947658 ATATCAAATTTACAGTATAA
65 ATATCAAATTTACAGTATAA
* *
947678 CTCAAGGCGAGAAGGGTTATCTGTCAGCAAAGACCTTTGAGTTCGATTACATTTAGCTCAAAGGC
1 CTCAAGGCGAGAAGGGCTATCTGTCA-CAAAGACCTTTGAGTTCGATTACATTCAGCTCAAAGGC
* * ** *
947743 ATATTAAATTTGCAACATAG
65 ATATCAAATTTACAGTATAA
* * * *
947763 CTCAAGGCGAGAAGGACTATCTGTCCACAAATACCTTTGAGTT-GATTCCATTCAGCTCAAGGGC
1 CTCAAGGCGAGAAGGGCTATCTGT-CACAAAGACCTTTGAGTTCGATTACATTCAGCTCAAAGGC
*
947827 ATGTCAAATTTACAGTATAA
65 ATATCAAATTTACAGTATAA
947847 CT
1 CT
947849 TAAGTTGGGA
Statistics
Matches: 145, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
84 35 0.24
85 108 0.74
86 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (84 bp):
CTCAAGGCGAGAAGGGCTATCTGTCACAAAGACCTTTGAGTTCGATTACATTCAGCTCAAAGGCA
TATCAAATTTACAGTATAA
Found at i:949170 original size:13 final size:13
Alignment explanation
Indices: 949154--949207 Score: 69
Period size: 12 Copynumber: 4.4 Consensus size: 13
949144 CATAATGAAA
*
949154 ATAAATAAATAGT
1 ATAAATAAATAAT
949167 ATAAATAAATAAT
1 ATAAATAAATAAT
949180 A-AAATAAA-AAT
1 ATAAATAAATAAT
*
949191 ATATATAAA-AAT
1 ATAAATAAATAAT
949203 ATAAA
1 ATAAA
949208 AATGTATGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
11 4 0.11
12 20 0.54
13 13 0.35
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (13 bp):
ATAAATAAATAAT
Found at i:949491 original size:23 final size:24
Alignment explanation
Indices: 949456--949503 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
949446 ACGTAAAGAA
949456 AAATGAAAAAAAATTATAA-TAAAT
1 AAATGAAAAAAAA-TATAATTAAAT
*
949480 AAAT-AAATAAAATATAATTAAAT
1 AAATGAAAAAAAATATAATTAAAT
949503 A
1 A
949504 TATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 5 0.23
23 13 0.59
24 4 0.18
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (24 bp):
AAATGAAAAAAAATATAATTAAAT
Found at i:949959 original size:37 final size:36
Alignment explanation
Indices: 949918--950009 Score: 94
Period size: 36 Copynumber: 2.5 Consensus size: 36
949908 ATGCTTGTGG
* *
949918 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTAT-TTTAGGAGTTTAAATAATAGCAAAACTCT
* * ** *
949955 ATCCTATTTTAGAAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTAGGAGTTTAAATAATAGCAAAACTCT
*
949991 ATCATATTTTTAGGAGTTT
1 ATCCTA-TTTTAGGAGTTT
950010 GAATCCTAGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
36 27 0.60
37 18 0.40
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTAAATAATAGCAAAACTCT
Found at i:950961 original size:106 final size:106
Alignment explanation
Indices: 950769--951938 Score: 1872
Period size: 106 Copynumber: 11.0 Consensus size: 106
950759 GAATTGTTTC
* * * *
950769 GAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAATCGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * * *
950834 CCAGCCGTCCCTCCGTTGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
950875 GAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * *
950940 CTAGCAGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
950981 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
951046 CTAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
951087 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAATTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
951152 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
951193 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
951258 CTAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
951299 GAGTCTAATATCTTTCGTTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* *
951364 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTATC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
951405 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
951470 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
951511 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * *
951576 CTAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
951617 GAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAAATGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
951682 CCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
951723 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
*
951788 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
951829 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTAGCTCTGAATTTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
* * * *
951894 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
951935 GAGT
1 GAGT
951939 GGCACGATAT
Statistics
Matches: 995, Mismatches: 69, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 995 1.00
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:952937 original size:22 final size:21
Alignment explanation
Indices: 952882--952937 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
952872 ATTGTGTTTG
*
952882 GTCAAAGGTTTGGCATTTGAT
1 GTCAAAAGTTTGGCATTTGAT
*
952903 GTTAAAAGATTTGGCATTTGAT
1 GTCAAAAG-TTTGGCATTTGAT
*
952925 GCTCAAATGTTTG
1 G-TCAAAAGTTTG
952938 ATGGGGTAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 6 0.21
22 18 0.62
23 5 0.17
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (21 bp):
GTCAAAAGTTTGGCATTTGAT
Found at i:953566 original size:16 final size:15
Alignment explanation
Indices: 953547--953606 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 15
953537 TTGTCCCCTT
953547 TTCTTTTTGATTTTTG
1 TTCTTTTT-ATTTTTG
*
953563 TTCTTTCT-TTTTTG
1 TTCTTTTTATTTTTG
953577 TT-TTCTTCT-TTTTTG
1 TTCTT-TT-TATTTTTG
953592 CTTCTTTTTATTTTT
1 -TTCTTTTTATTTTT
953607 TTTTTATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 2 0.05
14 9 0.24
15 8 0.22
16 16 0.43
17 2 0.05
ACGTcount: A:0.03, C:0.12, G:0.07, T:0.78
Consensus pattern (15 bp):
TTCTTTTTATTTTTG
Found at i:953585 original size:15 final size:14
Alignment explanation
Indices: 953557--953598 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
953547 TTCTTTTTGA
953557 TTTTTGTTCTTTCT
1 TTTTTGTTCTTTCT
*
953571 TTTTTGTTTTCTTCT
1 TTTTTGTTCT-TTCT
953586 TTTTTGCTTCTTT
1 TTTTTG-TTCTTT
953599 TTATTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.38
15 12 0.50
16 3 0.12
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.79
Consensus pattern (14 bp):
TTTTTGTTCTTTCT
Found at i:953616 original size:27 final size:28
Alignment explanation
Indices: 953545--953619 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 28
953535 TTTTGTCCCC
*
953545 TTTTCTTTTTGATTTTTG-TTCTTTCTT
1 TTTTCTTTTTTATTTTTGCTTCTTTCTT
* *
953572 TTTTGTTTTCTTCTTTTTTGCTTCTTT-TT
1 TTTTCTTTT-TT-ATTTTTGCTTCTTTCTT
953601 ATTTT-TTTTTTATTTTTGC
1 -TTTTCTTTTTTATTTTTGC
953620 CCTTTTTGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
27 15 0.38
28 3 0.08
29 12 0.30
30 10 0.25
ACGTcount: A:0.04, C:0.11, G:0.07, T:0.79
Consensus pattern (28 bp):
TTTTCTTTTTTATTTTTGCTTCTTTCTT
Found at i:956978 original size:19 final size:19
Alignment explanation
Indices: 956945--956981 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
956935 TGCAGATGAT
956945 GGAAATAAAATAAAAGAGA
1 GGAAATAAAATAAAAGAGA
956964 GGAAA-AAAATGAAAAGAG
1 GGAAATAAAAT-AAAAGAG
956982 TTAGTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (19 bp):
GGAAATAAAATAAAAGAGA
Found at i:958275 original size:13 final size:13
Alignment explanation
Indices: 958259--958313 Score: 53
Period size: 12 Copynumber: 4.4 Consensus size: 13
958249 CATAATGAAA
*
958259 ATAAATAAATAGT
1 ATAAATAAATAAT
958272 ATAAATAAAATAAT
1 ATAAAT-AAATAAT
*
958286 A-AAATAAA-AAA
1 ATAAATAAATAAT
*
958297 ATATATAAA-AAT
1 ATAAATAAATAAT
958309 ATAAA
1 ATAAA
958314 AATGTATGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
11 3 0.09
12 15 0.43
13 10 0.29
14 7 0.20
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (13 bp):
ATAAATAAATAAT
Found at i:958286 original size:17 final size:17
Alignment explanation
Indices: 958272--958306 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
958262 AATAAATAGT
958272 ATAAATAAAATAATAAA
1 ATAAATAAAATAATAAA
958289 ATAAA-AAAATATATAAA
1 ATAAATAAAATA-ATAAA
958306 A
1 A
958307 ATATAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
ATAAATAAAATAATAAA
Found at i:958309 original size:18 final size:16
Alignment explanation
Indices: 958272--958316 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
958262 AATAAATAGT
958272 ATAAATAAAATAATAAA
1 ATAAA-AAAATAATAAA
958289 ATAAAAAAATATATAAAA
1 ATAAAAAAATA-AT-AAA
*
958307 ATATAAAAAT
1 ATAAAAAAAT
958317 GTATGTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 6 0.24
17 7 0.28
18 12 0.48
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAAAAAATAATAAA
Found at i:958554 original size:25 final size:25
Alignment explanation
Indices: 958510--958558 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
958500 ATATATATAT
958510 ATATATATATAATAATAGAAAAATA
1 ATATATATATAATAATAGAAAAATA
958535 ATATA-ATATAACGTAA-AGAAAAAT
1 ATATATATATAA--TAATAGAAAAAT
958559 GAAAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
25 13 0.59
26 3 0.14
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (25 bp):
ATATATATATAATAATAGAAAAATA
Found at i:959112 original size:37 final size:37
Alignment explanation
Indices: 959019--959120 Score: 132
Period size: 37 Copynumber: 2.8 Consensus size: 37
959009 ATGCTTGTGG
* * ** * * *
959019 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTAT
*
959056 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTAT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTAT
959093 ATCCTATTTTTAGGAGTTTGAATCCTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAG
959121 TAGGACAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAACTAT
Found at i:966182 original size:21 final size:21
Alignment explanation
Indices: 966140--966183 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
966130 ACTCCGAGAG
* *
966140 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
966161 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
966182 CT
1 CT
966184 CCTCCAGCTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:968960 original size:5 final size:5
Alignment explanation
Indices: 968950--969008 Score: 61
Period size: 5 Copynumber: 12.0 Consensus size: 5
968940 CTAAAAAAAC
* *
968950 ATTAT ATTAT ATTAT ATTATT ATAAT ATTATT ATTAT -TTTT ATTA- ATTAT
1 ATTAT ATTAT ATTAT ATTA-T ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT
969000 ATTA- ATTAT
1 ATTAT ATTAT
969009 TTTGCAGGCC
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
4 11 0.24
5 25 0.56
6 9 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTAT
Found at i:969011 original size:21 final size:21
Alignment explanation
Indices: 968950--969011 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
968940 CTAAAAAAAC
*
968950 ATTATATTATATTATATTATT
1 ATTATATTATATTATTTTATT
*
968971 ATAATATTATTATTATTTTTATT
1 ATTATATTA-TATTA-TTTTATT
968994 AATTATATTA-ATTATTTT
1 -ATTATATTATATTATTTT
969012 GCAGGCCCCT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
21 12 0.34
22 9 0.26
23 6 0.17
24 8 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTATATTATATTATTTTATT
Found at i:969905 original size:5 final size:5
Alignment explanation
Indices: 969895--969925 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
969885 AAAATTTTAA
969895 TTATT TTATT TTATT TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TTATT TTATT T
969926 GTTCCCTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:976564 original size:52 final size:55
Alignment explanation
Indices: 976498--976607 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 55
976488 GTTTTTCCAA
*
976498 ATAATATTTTTTATTTA-AA-CTTGTCACATCGATGTGATAAGTTCTAA-AAAAAT
1 ATAATATTTTTTA-TTAGAATCTTGTCACATCGAAGTGATAAGTTCTAATAAAAAT
* *
976551 ATAA-ATTTTTTATTAGAATTTTGTTACATCGAAGTGATAAGTTCTAATAAAAAT
1 ATAATATTTTTTATTAGAATCTTGTCACATCGAAGTGATAAGTTCTAATAAAAAT
976605 ATA
1 ATA
976608 TTTTATTAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
51 3 0.06
52 10 0.20
53 29 0.57
54 9 0.18
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (55 bp):
ATAATATTTTTTATTAGAATCTTGTCACATCGAAGTGATAAGTTCTAATAAAAAT
Found at i:984541 original size:20 final size:20
Alignment explanation
Indices: 984486--984541 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
984476 TTATATACAA
984486 TATATTTTTATTATAA---T
1 TATATTTTTATTATAATTTT
* *
984503 TATACTTTTTTTTGT-ATTTT
1 TATA-TTTTTATTATAATTTT
984523 TATATTTTTATTATAATTT
1 TATATTTTTATTATAATTT
984542 AAATTGATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
17 5 0.17
18 8 0.27
19 8 0.27
20 9 0.30
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (20 bp):
TATATTTTTATTATAATTTT
Found at i:990386 original size:12 final size:12
Alignment explanation
Indices: 990369--990426 Score: 55
Period size: 12 Copynumber: 4.6 Consensus size: 12
990359 TCAGAACAAA
990369 AAAAGAAAAAAG
1 AAAAGAAAAAAG
990381 AAAAGAAAAAAG
1 AAAAGAAAAAAG
990393 CAAACAGAGAAACAAG
1 -AAA-AGA-AAA-AAG
**
990409 AAAAGTGAAAA-
1 AAAAGAAAAAAG
990420 AAAAGAA
1 AAAAGAA
990427 GACAAGATGC
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
11 5 0.13
12 14 0.37
13 5 0.13
14 5 0.13
15 6 0.16
16 3 0.08
ACGTcount: A:0.76, C:0.05, G:0.17, T:0.02
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:992169 original size:37 final size:36
Alignment explanation
Indices: 992115--992216 Score: 116
Period size: 36 Copynumber: 2.8 Consensus size: 36
992105 TGAAATAAAC
* * *
992115 TTTGTCTCCCTTGAGACAGTTTCTTTTGGAA-CTAAGT
1 TTTGTCTCTCTTGAGACAGTTTCTCTT-GAAGC-AAAT
* *
992152 TTTGTCTCTCTTAAGACAGATTCTCTTGAAGCAAAT
1 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAGCAAAT
* *
992188 TTTCTCTCTCTTGAGACAGTTTCCCTTGA
1 TTTGTCTCTCTTGAGACAGTTTCTCTTGA
992217 GACAAAATCT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
36 31 0.56
37 24 0.44
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.42
Consensus pattern (36 bp):
TTTGTCTCTCTTGAGACAGTTTCTCTTGAAGCAAAT
Found at i:992340 original size:36 final size:36
Alignment explanation
Indices: 992240--992393 Score: 200
Period size: 37 Copynumber: 4.2 Consensus size: 36
992230 AATATATTTT
* * * *
992240 TCTTGAAACAAATTTCGTATCCCTTGAGACAATTTC
1 TCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTC
* * * *
992276 TTTTGGAACTAAGTTTTGTCTCTCTTGAGATAGTTTC
1 TCTTGAAAC-AAATTTTGTCTCTCTTGAGACAGTTTC
*
992313 TCTTGAAACAAATTTTGTCTCTATTGAGACAGTTTC
1 TCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTC
*
992349 CCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTC
1 TCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTC
992386 TCTTGAAA
1 TCTTGAAA
992394 AAAAACCTTT
Statistics
Matches: 100, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
36 42 0.42
37 58 0.58
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (36 bp):
TCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTC
Found at i:992360 original size:138 final size:138
Alignment explanation
Indices: 992041--992360 Score: 489
Period size: 138 Copynumber: 2.3 Consensus size: 138
992031 AATTTACTCA
* * *
992041 AAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAAAAAATCTTTGAATATGTTTTCCTT
1 AAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTAAATATATTTTCCTT
* * *
992106 GAAATAAACTTTGTCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTAAGACAG
65 GAAACAAACTTTGTATCCCTTGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTAAGACAG
992171 ATTCTCTTG
130 ATTCTCTTG
* * * *
992180 AAGCAAATTTTCTCTCTCTTGAGACAGTTTCCCTTGAGACAAAATCTTTAAATATATTTTTCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTAAATATATTTTCCTTG
* *
992245 AAACAAA-TTTCGTATCCCTTGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGATAG
66 AAACAAACTTT-GTATCCCTTGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTAAGACAG
*
992309 TTTCTCTTG
130 ATTCTCTTG
*
992318 AAACAAATTTTGTCTCTATTGAGACAGTTTCCCTTGAAACAAA
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
992361 GTTTTGTCTC
Statistics
Matches: 163, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
137 3 0.02
138 154 0.94
139 6 0.04
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.40
Consensus pattern (138 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTAAATATATTTTCCTTG
AAACAAACTTTGTATCCCTTGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTAAGACAGA
TTCTCTTG
Found at i:992363 original size:73 final size:73
Alignment explanation
Indices: 992240--992393 Score: 218
Period size: 73 Copynumber: 2.1 Consensus size: 73
992230 AATATATTTT
* ** * *
992240 TCTTGAAACAAATTTCGTATCCCTTGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAG
1 TCTTGAAACAAATTTCGTATCCATTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAG
*
992305 ATAGTTTC
66 ACAGTTTC
* * * *
992313 TCTTGAAACAAATTTTGTCTCTATTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAG
1 TCTTGAAACAAATTTCGTATCCATTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAG
992378 ACAGTTTC
66 ACAGTTTC
992386 TCTTGAAA
1 TCTTGAAA
992394 AAAAACCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (73 bp):
TCTTGAAACAAATTTCGTATCCATTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAG
ACAGTTTC
Found at i:992433 original size:34 final size:33
Alignment explanation
Indices: 992391--992495 Score: 151
Period size: 34 Copynumber: 3.2 Consensus size: 33
992381 GTTTCTCTTG
992391 AAAAAAAACCTTTGAAATCGTTTCTCTTGAAACA
1 AAAAAAAACCTTTGAAAT-GTTTCTCTTGAAACA
*
992425 AAAAAAAACATTTGAAATTGTTTCTCTTGAAAC-
1 AAAAAAAACCTTTGAAA-TGTTTCTCTTGAAACA
*
992458 -ACAAAAACCTTTGAAAATGTTTCTCTTGAAACA
1 AAAAAAAACCTTTG-AAATGTTTCTCTTGAAACA
992491 AAAAA
1 AAAAA
992496 CCTTCGAGTT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
32 26 0.41
33 3 0.05
34 33 0.52
35 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.30
Consensus pattern (33 bp):
AAAAAAAACCTTTGAAATGTTTCTCTTGAAACA
Done.