Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000836.1 Hibiscus syriacus cultivar Beakdansim tig00001617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98063

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4462--4535
27
2.7
27
76
12
71
43
25
10
20
1.84
8313--8376
21
3.0
21
73
8
67
29
17
20
32
1.95
8316--8383
21
3.2
21
70
15
59
25
19
19
36
1.94
10727--10779
21
2.4
23
81
15
67
62
13
5
18
1.50
10821--10876
5
11.2
5
100
0
112
60
0
19
19
1.36
15119--15167
22
2.2
22
78
7
55
16
12
10
61
1.57
15747--15797
17
2.8
19
76
11
61
50
3
3
41
1.39
15946--16003
29
2.0
29
93
0
98
32
10
15
41
1.81
15948--16022
29
2.6
29
86
0
96
34
9
16
40
1.80
16082--16139
28
2.0
29
93
3
100
31
10
13
44
1.78
16219--16295
29
2.6
29
81
2
91
33
7
10
48
1.66
16359--16515
29
5.2
29
74
8
143
36
8
11
43
1.71
15935--16435
137
3.6
137
87
2
718
35
10
12
40
1.78
16194--16627
233
1.9
234
91
1
710
36
9
11
42
1.75
16358--16528
93
1.8
93
93
0
297
35
8
12
43
1.73
16461--16665
112
1.9
107
83
9
265
35
11
11
41
1.77
20098--20363
43
6.2
42
81
6
259
34
20
21
23
1.96
20128--20363
85
2.8
85
83
4
289
34
20
21
23
1.96
25026--25205
41
4.4
42
86
2
233
36
17
17
28
1.93
25026--25241
41
5.3
39
84
7
202
34
18
17
30
1.94
26262--26506
131
1.9
131
85
3
341
40
13
10
35
1.79
26262--26535
131
2.1
131
82
2
327
40
14
10
34
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26531--30192
912
4.0
912
97
1
6734
45
12
11
29
1.78
33272--33306
17
2.1
17
100
0
70
22
25
22
28
1.99
33995--34150
77
2.0
77
98
0
303
14
13
21
51
1.76
39898--39932
18
1.9
18
94
0
61
40
20
17
22
1.92
57590--57754
33
4.8
33
68
15
118
36
9
14
39
1.78
57502--57838
106
3.2
106
97
0
629
36
9
14
39
1.78
57754--57921
83
2.0
83
97
0
318
36
10
12
40
1.77
57873--57943
33
2.2
33
84
0
88
43
11
8
36
1.71
57623--58122
189
2.7
179
91
6
856
36
9
14
40
1.78
57918--58207
73
4.1
73
78
9
355
35
8
14
40
1.77
58064--58155
33
2.8
33
96
0
157
39
8
13
39
1.75
62183--62509
161
2.0
161
96
0
609
48
19
12
18
1.80
67490--67538
17
2.9
17
79
11
55
57
4
0
38
1.18
77587--77631
22
2.0
23
86
4
65
53
22
2
22
1.57
78440--78624
60
3.1
59
77
7
194
36
7
23
32
1.82
81137--81292
82
1.9
84
86
2
226
24
21
12
41
1.87
81884--81931
22
2.2
22
96
0
87
41
12
12
33
1.80

Tables:   1

The End!