Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008360.1 Hibiscus syriacus cultivar Beakdansim tig00111099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1563863
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:688654 original size:93 final size:93
Alignment explanation
Indices: 688340--688719 Score: 753
Period size: 93 Copynumber: 4.1 Consensus size: 93
688330 TAGATTGCTT
688340 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
688405 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
688433 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
688497 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
688525 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
688590 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
688618 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
688683 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
688711 AGTAAATTT
1 AGTAAATTT
688720 ATCCATTCAA
Statistics
Matches: 286, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.32
93 194 0.68
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:688803 original size:19 final size:19
Alignment explanation
Indices: 688763--688891 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
688753 TAGTTTACTT
* *
688763 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
688783 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
688802 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
688821 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
688835 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
688854 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
688868 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
688887 TCGCA
1 TCGCA
688892 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:688842 original size:33 final size:32
Alignment explanation
Indices: 688799--688891 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
688789 CGCGAAACCA
**
688799 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
688831 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
688864 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
688892 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:688889 original size:52 final size:52
Alignment explanation
Indices: 688763--688891 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
688753 TAGTTTACTT
**
688763 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
688815 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
688868 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
688892 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:688909 original size:19 final size:19
Alignment explanation
Indices: 688887--689005 Score: 114
Period size: 19 Copynumber: 6.8 Consensus size: 19
688877 GAAACCAAAA
688887 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
688906 TCGCGTTGCGA--TTC-TT
1 TCGCATTGCGATTTTCATT
688922 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
688939 TCGCATTGCGA--TTC-TG
1 TCGCATTGCGATTTTCATT
*
688955 TCG--TTGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
**
688972 TCGCATTGCGATTTTGGTT
1 TCGCATTGCGATTTTCATT
*
688991 TCGCGTTGCGATTTT
1 TCGCATTGCGATTTT
689006 AAGTTTCGTG
Statistics
Matches: 83, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
14 12 0.14
16 14 0.17
17 15 0.18
19 42 0.51
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:688928 original size:14 final size:14
Alignment explanation
Indices: 688909--688965 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
688899 TTTCATTTCG
688909 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
688923 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
688940 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
688956 CGTTGCGATT
1 CGTTGCGATT
688966 TTAATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:688934 original size:33 final size:33
Alignment explanation
Indices: 688892--688984 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
688882 CAAAATCGCA
* *
688892 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
688925 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
*
688958 TTGCGATTTTAATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
688985 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.13, C:0.19, G:0.20, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
Found at i:689013 original size:20 final size:20
Alignment explanation
Indices: 688956--689021 Score: 91
Period size: 19 Copynumber: 3.4 Consensus size: 20
688946 GCGATTCTGT
688956 CGTTGCGATTTTAA-TTTCG
1 CGTTGCGATTTTAAGTTTCG
* *
688975 CATTGCGATTTT-GGTTTCG
1 CGTTGCGATTTTAAGTTTCG
688994 CGTTGCGATTTTAAGTTTCG
1 CGTTGCGATTTTAAGTTTCG
*
689014 TGTTGCGA
1 CGTTGCGA
689022 AAGTAAACTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
19 27 0.68
20 13 0.32
ACGTcount: A:0.14, C:0.15, G:0.26, T:0.45
Consensus pattern (20 bp):
CGTTGCGATTTTAAGTTTCG
Found at i:690882 original size:38 final size:38
Alignment explanation
Indices: 690839--690911 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
690829 AATTGATTGT
*
690839 TTTTTGATTGTTTAATTGATTTGTAAAAGTTGATTCAA
1 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
690877 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATT
1 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATT
690912 TGTAAAAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.01, G:0.16, T:0.53
Consensus pattern (38 bp):
TTTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
Found at i:690898 original size:19 final size:19
Alignment explanation
Indices: 690834--690898 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
690824 AGTTTAATTG
*
690834 ATTGTTTTTTGATTGTTTA
1 ATTGATTTTTGATTGTTTA
* * ** *
690853 ATTGATTTGTAAAAG-TTG
1 ATTGATTTTTGATTGTTTA
*
690871 ATTCAATTTTTGATTGTTTA
1 ATT-GATTTTTGATTGTTTA
690891 ATTGATTT
1 ATTGATTT
690899 GTAAAAGATG
Statistics
Matches: 31, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
18 5 0.16
19 21 0.68
20 5 0.16
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (19 bp):
ATTGATTTTTGATTGTTTA
Found at i:690912 original size:14 final size:14
Alignment explanation
Indices: 690893--690928 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
690883 ATTGTTTAAT
690893 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
690907 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
690921 TGATTTGT
1 TGATTTGT
690929 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:691051 original size:19 final size:19
Alignment explanation
Indices: 691035--691136 Score: 142
Period size: 19 Copynumber: 5.6 Consensus size: 19
691025 AAAAATGACT
691035 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
691054 ATCGCAATGCGAAATAAAA
1 ATCGCAATGCGAAATGAAA
*
691073 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
691087 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
691106 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
691126 ATCGCAATGCG
1 ATCGCAATGCG
691137 TTTATAATTT
Statistics
Matches: 73, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
14 9 0.12
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.53
20 19 0.26
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:691185 original size:33 final size:33
Alignment explanation
Indices: 691143--691470 Score: 210
Period size: 33 Copynumber: 9.5 Consensus size: 33
691133 TGCGTTTATA
691143 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
*
691176 ATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC
1 ATTTCGCATTGCGA--TT-ATCTCG--TTGCGATTTTC
*
691212 -TTTCG--TTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA--TT-ATCTCG--TTGCGATTTTC
* *
691247 ATTTCGCATTGCGATTTTCATTTCGTATTGCGATTTTA
1 ATTTCGCATTGCGA--TT-ATCTCG--TTGCGATTTTC
*
691285 ATTTCGCATTGCGATTATGTCGGTT-CGATTTTC
1 ATTTCGCATTGCGATTATCTC-GTTGCGATTTTC
*
691318 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 ATTTCGCATTGCGA--TT-ATCTCG--TTGCGATT-T-TC
* * * * *
691358 GTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTC
1 ATTTCGCA-TTGCGATTATCTCGTTGCGATTTTC
*
691389 ATTTCGCATTGCGATTCTCTCGTTGCGA-TTTC
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
* *
691421 ATTTCCGCATTGCGATTTTCAT-GTTGGGATTTTC
1 ATTT-CGCATTGCGATTATC-TCGTTGCGATTTTC
*
691455 ATTTCGCGTTGCGATT
1 ATTTCGCATTGCGATT
691471 GTATTTTCCG
Statistics
Matches: 249, Mismatches: 20, Indels: 52
0.78 0.06 0.16
Matches are distributed among these distances:
31 9 0.04
32 13 0.05
33 108 0.43
34 11 0.04
35 19 0.08
36 20 0.08
37 4 0.02
38 53 0.21
39 3 0.01
40 9 0.04
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (33 bp):
ATTTCGCATTGCGATTATCTCGTTGCGATTTTC
Found at i:691189 original size:19 final size:19
Alignment explanation
Indices: 691165--691470 Score: 349
Period size: 19 Copynumber: 17.4 Consensus size: 19
691155 GATTATCTCG
691165 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
691184 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
691203 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
691217 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
691236 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
691255 TTGCGATTTTCATTTCGTA
1 TTGCGATTTTCATTTCGCA
*
691274 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
* *
691293 TTGCGA--TT-ATGTCG-G
1 TTGCGATTTTCATTTCGCA
691308 TT-CGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
691326 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
691345 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
691359 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
691378 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
691397 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
691411 TTGCGA-TTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
691430 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
691444 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
691463 TTGCGATT
1 TTGCGATT
691471 GTATTTTCCG
Statistics
Matches: 248, Mismatches: 13, Indels: 52
0.79 0.04 0.17
Matches are distributed among these distances:
14 32 0.13
15 5 0.02
16 30 0.12
17 28 0.11
18 3 0.01
19 145 0.58
20 5 0.02
ACGTcount: A:0.14, C:0.20, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:691240 original size:71 final size:71
Alignment explanation
Indices: 691165--691404 Score: 355
Period size: 71 Copynumber: 3.4 Consensus size: 71
691155 GATTATCTCG
691165 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
691230 TTCGCA
66 TTCGCA
* *
691236 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGTATTGCGATTTTAATTTCGCATTGCGA--
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TT-CTTTCG--TTGCGATT
* *
691299 TT-ATGTCG-G
61 TTCATTTCGCA
*
691308 TT-CGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
691372 TTCGCA
66 TTCGCA
691378 TTGCGATTTTCATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
691405 CTCTCGTTGC
Statistics
Matches: 150, Mismatches: 9, Indels: 20
0.84 0.05 0.11
Matches are distributed among these distances:
66 6 0.04
68 6 0.04
69 7 0.05
70 2 0.01
71 107 0.71
72 2 0.01
73 7 0.05
74 7 0.05
76 6 0.04
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.47
Consensus pattern (71 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTTCAT
TTCGCA
Found at i:691434 original size:71 final size:69
Alignment explanation
Indices: 691165--691470 Score: 298
Period size: 71 Copynumber: 4.4 Consensus size: 69
691155 GATTATCTCG
691165 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TTTCGTTGCGATTTTC
1 TTGCGATTTTCATTTCGCATTGCGA--TTCATTTCG-ATTGCGATTTCATTTCGTTGCGATTTTC
691228 ATTTCGCA
63 ATTTCG-A
*
691236 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGTATTGCGATTTTAATTTCGCATTGCGA--
1 TTGCGATTTTCATTTCGCATTGCGA--TTCATTTCG-ATTGCGA-TTTCATTTCG--TTGCGATT
* *
691299 TT-ATGTCGG
60 TTCATTTCGA
*
691308 TT-CGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TCTCGTTGCGATTTTC
1 TTGCGATTTTCATTTCGCATTGCGA--TTCATTTCG-ATTGCGATTTCATTTCGTTGCGATTTTC
691370 ATTTCGCA
63 ATTTCG-A
*
691378 TTGCGATTTTCATTTCGCATTGCGATTC-TCTCG-TTGCGATTTCATTTCCGCATTGCGATTTTC
1 TTGCGATTTTCATTTCGCATTGCGATTCATTTCGATTGCGATTTCATTT-CG--TTGCGATTTTC
691441 A--T-G-
63 ATTTCGA
* *
691444 TTGGGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
691471 GTATTTTCCG
Statistics
Matches: 207, Mismatches: 13, Indels: 35
0.81 0.05 0.14
Matches are distributed among these distances:
66 37 0.18
67 3 0.01
68 13 0.06
69 13 0.06
70 2 0.01
71 117 0.57
72 2 0.01
73 7 0.03
74 7 0.03
76 6 0.03
ACGTcount: A:0.14, C:0.20, G:0.18, T:0.47
Consensus pattern (69 bp):
TTGCGATTTTCATTTCGCATTGCGATTCATTTCGATTGCGATTTCATTTCGTTGCGATTTTCATT
TCGA
Found at i:691470 original size:52 final size:52
Alignment explanation
Indices: 691165--691442 Score: 320
Period size: 52 Copynumber: 5.2 Consensus size: 52
691155 GATTATCTCG
*
691165 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCATTGCGA--TTC---TCGCGTTGCGATTTTCATTTCGCA
* *
691217 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGTA
1 TTGCGATTTTCATTTCGCATTGCGA--TTC---TCGCGTTGCGATTTTCATTTCGCA
* *
691274 TTGCGATTTTAATTTCGCATTGCGATTAT-GTCGGTT-CGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCG-C-GTTGCGATTTTCATTTCGCA
*
691326 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCGCGTTGCGATTTTCATTTCGCA
*
691378 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGA-TTTCATTTCCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCGCGTTGCGATTTTCATTT-CGCA
691430 TTGCGATTTTCAT
1 TTGCGATTTTCAT
691443 GTTGGGATTT
Statistics
Matches: 209, Mismatches: 7, Indels: 20
0.89 0.03 0.08
Matches are distributed among these distances:
51 12 0.06
52 161 0.77
53 2 0.01
54 3 0.01
55 7 0.03
57 24 0.11
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCGCGTTGCGATTTTCATTTCGCA
Found at i:691478 original size:142 final size:139
Alignment explanation
Indices: 691133--691470 Score: 499
Period size: 142 Copynumber: 2.4 Consensus size: 139
691123 AAAATCGCAA
*
691133 TGCG-TTTATAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCAT
1 TGCGATTT-TAATTTCGCATTGCGATTTTCT-GTTGCGATTTTCATTTCGCATTGCGATTTTCAT
*
691197 TTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGAT
64 TTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-
*
691262 TTTCATTTCGTAT
128 TTTCATCTCG-AT
*
691275 TGCGATTTTAATTTCGCATTGCGATTATGTCGGTT-CGATTTTCATTTCGCATTGCGATTTTCAT
1 TGCGATTTTAATTTCGCATTGCGATT-T-TCTGTTGCGATTTTCATTTCGCATTGCGATTTTCAT
691339 TTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-
64 TTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGAT
691403 TTC-TCTCG-T
129 TTCATCTCGAT
* * *
691412 TGCGA-TTTCATTTCCGCATTGCGATTTTCATGTTGGGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTAATTT-CGCATTGCGATTTTC-TGTTGCGATTTTCATTTCGCATTGCGATT
691471 GTATTTTCCG
Statistics
Matches: 182, Mismatches: 8, Indels: 17
0.88 0.04 0.08
Matches are distributed among these distances:
135 2 0.01
136 11 0.06
137 40 0.22
139 4 0.02
140 3 0.02
142 114 0.63
143 6 0.03
144 2 0.01
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (139 bp):
TGCGATTTTAATTTCGCATTGCGATTTTCTGTTGCGATTTTCATTTCGCATTGCGATTTTCATTT
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTT
CATCTCGAT
Found at i:693794 original size:12 final size:12
Alignment explanation
Indices: 693777--693801 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
693767 TCTTCGGGGA
693777 CTTTTTCTTCTT
1 CTTTTTCTTCTT
693789 CTTTTTCTTCTT
1 CTTTTTCTTCTT
693801 C
1 C
693802 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:694010 original size:24 final size:24
Alignment explanation
Indices: 693976--694022 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
693966 CTGAAACATC
693976 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
694000 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
694023 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:694724 original size:20 final size:20
Alignment explanation
Indices: 694696--695026 Score: 461
Period size: 20 Copynumber: 16.6 Consensus size: 20
694686 AAATTTCAGT
* * * *
694696 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
694716 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
694736 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
694756 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
694776 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
694796 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
694816 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
694836 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
694856 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
694876 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
694896 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACGC
694916 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
694936 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
694956 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
694976 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
694996 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
695016 GTTGCGATTTA
1 GTTGCGATTTA
695027 TGTGTTCACG
Statistics
Matches: 281, Mismatches: 24, Indels: 12
0.89 0.08 0.04
Matches are distributed among these distances:
19 5 0.02
20 272 0.97
21 4 0.01
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.34
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:695039 original size:60 final size:60
Alignment explanation
Indices: 694696--695064 Score: 431
Period size: 60 Copynumber: 6.2 Consensus size: 60
694686 AAATTTCAGT
* * * * * * * *
694696 GTTGTGATTTACAGATTCTCGTTGCGATTTACGGATTA-TCGTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACGGA-TACACGTTGCGATTTACGGATACGC
* * *
694756 GTTGCGATTTACGGATTA-TCGTTGCGATTTACGGATACGCGTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGA-TACGC
* *
694816 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATACGCATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGC
* *
694876 GTTGCGATTTACGGATACGCGTTGCGGTTTACGGATACGCGTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGC
* * ** * *
694936 GTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGC
* * * ** *
694996 GTTGCGATTTACGGATACGCGTTGCGATTTATGTG-TTCACGTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACG-GATACACGTTGCGATTTACGGATACGC
695056 GTTGCGATT
1 GTTGCGATT
695065 ATGGAAAATC
Statistics
Matches: 274, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
59 6 0.02
60 266 0.97
61 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (60 bp):
GTTGCGATTTACGGATACGCGTTGCGATTTACGGATACACGTTGCGATTTACGGATACGC
Found at i:695057 original size:40 final size:40
Alignment explanation
Indices: 694696--695064 Score: 377
Period size: 40 Copynumber: 9.2 Consensus size: 40
694686 AAATTTCAGT
* * * * * *
694696 GTTGTGATTTACAGATTCTCGTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGA-TACGC
* * * * *
694736 GTTGCGATTTACAGATTCTCGTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGA-TACGC
* * *
694776 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGA-TACGC
* *
694816 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGATACGC
* * *
694856 ATTGCGATTTACGGATACGCGTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGATACGC
* * *
694896 GTTGCGGTTTACGGATACGCGTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGATACGC
* * * **
694936 GTTGCGATATACGGATACGCATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGATACGC
*
694976 GTTGCGATTTACGGATACACGTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACACGTTGCGATTTACAGATACGC
* * * * *
695016 GTTGCGATTTATGTG-TTCACGTTGCGATTTTCATATTCGC
1 GTTGCGATTTACG-GATACACGTTGCGATTTACAGATACGC
695056 GTTGCGATT
1 GTTGCGATT
695065 ATGGAAAATC
Statistics
Matches: 303, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 300 0.99
41 1 0.00
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (40 bp):
GTTGCGATTTACGGATACACGTTGCGATTTACAGATACGC
Found at i:695058 original size:20 final size:20
Alignment explanation
Indices: 695013--695064 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
695003 TTTACGGATA
* *
695013 CGCGTTGCGATTTATGTGTT
1 CGCGTTGCGATTTATATATT
*
695033 CACGTTGCGATTT-TCATATT
1 CGCGTTGCGATTTAT-ATATT
695053 CGCGTTGCGATT
1 CGCGTTGCGATT
695065 ATGGAAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.13, C:0.19, G:0.25, T:0.42
Consensus pattern (20 bp):
CGCGTTGCGATTTATATATT
Found at i:696628 original size:14 final size:16
Alignment explanation
Indices: 696598--696629 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
696588 ACTTTTTGTC
696598 AATTCAAATATTTTAA
1 AATTCAAATATTTTAA
696614 AATT-AAATA-TTTAA
1 AATTCAAATATTTTAA
696628 AA
1 AA
696630 AAAAAAGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 5 0.31
16 4 0.25
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTCAAATATTTTAA
Found at i:696631 original size:16 final size:16
Alignment explanation
Indices: 696598--696630 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
696588 ACTTTTTGTC
*
696598 AATTCAAATATTTTAA
1 AATTCAAATATTTAAA
696614 AATT-AAATATTTAAA
1 AATTCAAATATTTAAA
696629 AA
1 AA
696631 AAAAAGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTCAAATATTTAAA
Found at i:708059 original size:15 final size:15
Alignment explanation
Indices: 708039--708068 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
708029 TAGCATTTGT
708039 CAATCGCATTCTGCC
1 CAATCGCATTCTGCC
708054 CAATCGCATTCTGCC
1 CAATCGCATTCTGCC
708069 AGGAGGCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.13, T:0.27
Consensus pattern (15 bp):
CAATCGCATTCTGCC
Found at i:718293 original size:51 final size:51
Alignment explanation
Indices: 718233--718330 Score: 169
Period size: 51 Copynumber: 1.9 Consensus size: 51
718223 TTTACTGATA
*
718233 ATGTTTACCCTAAAATAAATATGTGTCTATCTTAAAAAATATTTTTAAATT
1 ATGTTTACCCTAAAATAAATATGTATCTATCTTAAAAAATATTTTTAAATT
* *
718284 ATGTTTACCCTAAAATAAATATGTATCTATTTTGAAAAATATTTTTA
1 ATGTTTACCCTAAAATAAATATGTATCTATCTTAAAAAATATTTTTA
718331 GATTTACCAC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (51 bp):
ATGTTTACCCTAAAATAAATATGTATCTATCTTAAAAAATATTTTTAAATT
Found at i:718592 original size:10 final size:10
Alignment explanation
Indices: 718577--718605 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
718567 CCTTCATTGC
718577 CCCTTGTTTT
1 CCCTTGTTTT
718587 CCCTTGTTTT
1 CCCTTGTTTT
718597 CCCTTGTTT
1 CCCTTGTTT
718606 AATGAGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.31, G:0.10, T:0.59
Consensus pattern (10 bp):
CCCTTGTTTT
Found at i:721705 original size:24 final size:24
Alignment explanation
Indices: 721654--721719 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
721644 CAATCTTATA
*
721654 TGGCACTACGGTGC-ATTTCTACG
1 TGGCACTACGGTGCAAATTCTACG
* *
721677 CGGCACTTCGGTGCAAATTCTACG
1 TGGCACTACGGTGCAAATTCTACG
*
721701 TGGCACTACGATGCAAATT
1 TGGCACTACGGTGCAAATT
721720 TATACGAGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 12 0.33
24 24 0.67
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (24 bp):
TGGCACTACGGTGCAAATTCTACG
Found at i:722466 original size:21 final size:21
Alignment explanation
Indices: 722440--722479 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
722430 TATGAAAGTT
722440 ACTGTAGCAGTGCATCGATGG
1 ACTGTAGCAGTGCATCGATGG
722461 ACTGTAGCAGTGCATCGAT
1 ACTGTAGCAGTGCATCGAT
722480 ACACAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (21 bp):
ACTGTAGCAGTGCATCGATGG
Found at i:722524 original size:12 final size:12
Alignment explanation
Indices: 722507--722549 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
722497 AATTTTTCAC
*
722507 TGTTCATGTTAT
1 TGTTCATGGTAT
722519 TGTTCATGGTAT
1 TGTTCATGGTAT
* * *
722531 TATTCACGGTAC
1 TGTTCATGGTAT
722543 TGTTCAT
1 TGTTCAT
722550 ATCGTATTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (12 bp):
TGTTCATGGTAT
Found at i:727089 original size:2 final size:2
Alignment explanation
Indices: 727082--727110 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
727072 ATCTTAACAT
727082 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
727111 TATTATCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:727148 original size:12 final size:12
Alignment explanation
Indices: 727125--727168 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
727115 ATCTTAAATT
727125 TATATATTTAAAA
1 TATAT-TTTAAAA
727138 TATATTTT-AAA
1 TATATTTTAAAA
*
727149 TACATTTTAAAA
1 TATATTTTAAAA
*
727161 TTTATTTT
1 TATATTTT
727169 TATTTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.37
12 12 0.44
13 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (12 bp):
TATATTTTAAAA
Found at i:727173 original size:18 final size:18
Alignment explanation
Indices: 727152--727192 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
727142 TTTTAAATAC
* *
727152 ATTTTAAAATTTATTTTT
1 ATTTTAAAATATATATTT
*
727170 ATTTAAAAATATATATTT
1 ATTTTAAAATATATATTT
727188 ATTTT
1 ATTTT
727193 TAATGTTAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTAAAATATATATTT
Found at i:727575 original size:111 final size:112
Alignment explanation
Indices: 727419--727646 Score: 347
Period size: 111 Copynumber: 2.0 Consensus size: 112
727409 TAAGATATAT
* *
727419 ATTTTATGTAGTCTACTTTGAACCAAGCAAATAGCTTGGTCTAGTGGTTGGTCTTTCTTCTACTC
1 ATTTTATGCAGTCTACTTTGAACCAAACAAATAGCTTGGTCTAGTGGTTGGTCTTTCTTCTACTC
* *
727484 A-CCAAATGACCT-GTGTTTGACTCCC-ATGCCCCCGCTTTGTGATTTA
66 ACCCAAATGACCTAG-GTTTGA-TCCCTATGCCCCCACTATGTGATTTA
*
727530 ATTTTATGCAGTCTACTTTGAACCAAACAAATTGCTTGG-CTTAGTGGTTGGTCTTTCTTCTACT
1 ATTTTATGCAGTCTACTTTGAACCAAACAAATAGCTTGGTC-TAGTGGTTGGTCTTTCTTCTACT
*
727594 CACCCAAATGACCTAGGTTTGATCCCTATGCCCCCACTATGTGCTTTA
65 CACCCAAATGACCTAGGTTTGATCCCTATGCCCCCACTATGTGATTTA
727642 ATTTT
1 ATTTT
727647 CTTTCTACCC
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
110 1 0.01
111 65 0.61
112 40 0.37
113 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (112 bp):
ATTTTATGCAGTCTACTTTGAACCAAACAAATAGCTTGGTCTAGTGGTTGGTCTTTCTTCTACTC
ACCCAAATGACCTAGGTTTGATCCCTATGCCCCCACTATGTGATTTA
Found at i:728093 original size:148 final size:147
Alignment explanation
Indices: 727777--728215 Score: 645
Period size: 148 Copynumber: 3.0 Consensus size: 147
727767 AATTTTATTT
* ** *
727777 TAATTTATTAAAATCAATACCAAATTTATAGAATATATAAGTAAGAGTGATCAAATATGTAATTA
1 TAATTTATTAAAATTAGGACCAAATTGATAGAATATATAAGTAAGAGTGATCAAATATGTAATTA
* * *
727842 TACCAATTTTACTAACTGTCACATCAGCACTTCCGTTAATTGTTAAC--AAGTGGA-CTGATTGA
66 TACCAATTTTACTAACTGTCA-GTCAGCACTTCTGTTAAATGTTAACAAAAGT-GACCTGATTGA
* *
727904 ATGCATTTAAATAATTGGG
129 ATGCATTTAAATAGTTGGA
* * *
727923 TAATTTATTAAAATTAGGACCAAATCGATATAATATATAAGTAATAGTGATCAAATATGTAATTA
1 TAATTTATTAAAATTAGGACCAAATTGATAGAATATATAAGTAAGAGTGATCAAATATGTAATTA
* *
727988 TACCAATTTTACTAACTGTCAGTCACCACTTCTGTTAACTGTTAACAATAAGTGACCTGATTGAA
66 TACCAATTTTACTAACTGTCAGTCAGCACTTCTGTTAAATGTTAACAA-AAGTGACCTGATTGAA
728053 TGCATTTAAATAGTTGGA
130 TGCATTTAAATAGTTGGA
*
728071 TAATTTATTAAAATTAGGACCAAATTGATAGAATATATAAGTAAGAGTGATC-AATATGTACTTA
1 TAATTTATTAAAATTAGGACCAAATTGATAGAATATATAAGTAAGAGTGATCAAATATGTAATTA
*
728135 TACCAATTTTACTAACTGTCGCGTCAGCACTT-TCGTTAAATGTTAACAACAAGTGACCTGATTG
66 TACCAATTTTACTAACTGTC-AGTCAGCACTTCT-GTTAAATGTTAACAA-AAGTGACCTGATTG
728199 AATGCATTTAAATAGTT
128 AATGCATTTAAATAGTT
728216 AGGTGACTCG
Statistics
Matches: 266, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
145 21 0.08
146 79 0.30
147 34 0.13
148 132 0.50
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (147 bp):
TAATTTATTAAAATTAGGACCAAATTGATAGAATATATAAGTAAGAGTGATCAAATATGTAATTA
TACCAATTTTACTAACTGTCAGTCAGCACTTCTGTTAAATGTTAACAAAAGTGACCTGATTGAAT
GCATTTAAATAGTTGGA
Found at i:729348 original size:95 final size:94
Alignment explanation
Indices: 729240--729471 Score: 401
Period size: 95 Copynumber: 2.4 Consensus size: 94
729230 TTTTTCTTTA
* *
729240 ACCGTTAACCGAACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTAACCGAATTTTTTTT
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCGAA-TTTTTTT
729305 CTTTAACATTAATCGAACCGAAATTATTTG
65 CTTTAACATTAATCGAACCGAAATTATTTG
* *
729335 ACCGTTAATCGAACTGAAATTTATTTGAAAATTATTAACTGAACAAAATTAACCGAATTTTTTTC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCGAATTTTTTTC
729400 TTTAACATTAATCGAACCGAAATTATTTG
66 TTTAACATTAATCGAACCGAAATTATTTG
*
729429 ACCATTAATCGAACCGAAAATTTATTTGAAAATTATTAACCGA
1 ACCGTTAATCGAACCG-AAATTTATTTGAAAATTATTAACCGA
729472 TTTTTTTCTT
Statistics
Matches: 129, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
94 51 0.40
95 78 0.60
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (94 bp):
ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACAAAATTAACCGAATTTTTTTC
TTTAACATTAATCGAACCGAAATTATTTG
Found at i:729437 original size:26 final size:26
Alignment explanation
Indices: 729400--729527 Score: 102
Period size: 26 Copynumber: 4.8 Consensus size: 26
729390 AATTTTTTTC
729400 TTTAA-CATTAATCGAACCGAAATTA
1 TTTAACCATTAATCGAACCGAAATTA
*
729425 TTTGACCATTAATCGAACCGAAAATTTA
1 TTTAACCATTAATCGAACCG-AAA-TTA
* * ** *
729453 TTTGAA-AATT-AT-TAACCGATTTTTTTC
1 TTT-AACCATTAATCGAACCGA---AATTA
*
729480 TTTAACCATTAATCGAACCAAAATTA
1 TTTAACCATTAATCGAACCGAAATTA
*
729506 TTTAACCGTTAATCGAACCGAA
1 TTTAACCATTAATCGAACCGAA
729528 CCAAATCAAT
Statistics
Matches: 78, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
25 5 0.06
26 43 0.55
27 13 0.17
28 11 0.14
29 6 0.08
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (26 bp):
TTTAACCATTAATCGAACCGAAATTA
Found at i:729720 original size:81 final size:81
Alignment explanation
Indices: 729624--729858 Score: 384
Period size: 81 Copynumber: 2.9 Consensus size: 81
729614 TAACCGAATA
* *
729624 AAATAAATTTGGGTTCGATTAA-GTATCAAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAA
1 AAATAAATTTCGGTTCGATTAACG-GTCAAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAA
*
729688 TTCAGTTAATAATTTTC
65 TTCGGTTAATAATTTTC
729705 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAAT
1 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAAT
729770 TCGGTTAATAATTTTC
66 TCGGTTAATAATTTTC
* ** *
729786 AAATAAATTTTGGTTCGATTAACGGTCAAATAATTACGGTTCGATTAAT-GTTAAAGAAAAAAAA
1 AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAAT
729850 TCGGTTAAT
66 TCGGTTAAT
729859 TTGGTTCGGT
Statistics
Matches: 146, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
80 23 0.16
81 122 0.84
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (81 bp):
AAATAAATTTCGGTTCGATTAACGGTCAAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAAT
TCGGTTAATAATTTTC
Found at i:729745 original size:26 final size:26
Alignment explanation
Indices: 729703--729833 Score: 95
Period size: 26 Copynumber: 4.9 Consensus size: 26
729693 TTAATAATTT
729703 TCAAATAAATTTCGGTTCGATTAACGG
1 TCAAAT-AATTTCGGTTCGATTAACGG
* *
729730 TCAAATAATTTTGGTTCGATTAATGG
1 TCAAATAATTTCGGTTCGATTAACGG
* * * * ***
729756 TTAAAGAAAAAAATTCGGTT--AATAATTT
1 -T---CAAATAATTTCGGTTCGATTAACGG
*
729784 TCAAATAAATTTTGGTTCGATTAACGG
1 TCAAAT-AATTTCGGTTCGATTAACGG
*
729811 TCAAATAATTACGGTTCGATTAA
1 TCAAATAATTTCGGTTCGATTAA
729834 TGTTAAAGAA
Statistics
Matches: 78, Mismatches: 19, Indels: 15
0.70 0.17 0.13
Matches are distributed among these distances:
24 3 0.04
25 8 0.10
26 33 0.42
27 18 0.23
28 5 0.06
30 11 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (26 bp):
TCAAATAATTTCGGTTCGATTAACGG
Found at i:740043 original size:23 final size:23
Alignment explanation
Indices: 740016--740096 Score: 67
Period size: 23 Copynumber: 3.5 Consensus size: 23
740006 TCCTTTATAA
*
740016 TCGTTTATGTTTATTTATTGTGT
1 TCGTTTATGTTTATTTATTATGT
*** **
740039 TCGTTTGCATTCGTTTATTATGT
1 TCGTTTATGTTTATTTATTATGT
740062 TCGTTTATG-TTAGTTTA-TATCCGT
1 TCGTTTATGTTTA-TTTATTAT--GT
740086 TCGTTTATGTT
1 TCGTTTATGTT
740097 CGTTCGTTTG
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
22 4 0.09
23 27 0.63
24 11 0.26
25 1 0.02
ACGTcount: A:0.14, C:0.10, G:0.17, T:0.59
Consensus pattern (23 bp):
TCGTTTATGTTTATTTATTATGT
Found at i:740704 original size:50 final size:50
Alignment explanation
Indices: 740629--740728 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
740619 TTGTGTATAG
740629 TTTTATTTTTATTTTAATTATATATTAACAAATAATAAAAAATTCATGAC
1 TTTTATTTTTATTTTAATTATATATTAACAAATAATAAAAAATTCATGAC
740679 TTTTATTTTTATTTTAATTATATATTAACAAATAATAAAAAATTCATGAC
1 TTTTATTTTTATTTTAATTATATATTAACAAATAATAAAAAATTCATGAC
740729 ACAAATAATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (50 bp):
TTTTATTTTTATTTTAATTATATATTAACAAATAATAAAAAATTCATGAC
Found at i:740851 original size:2 final size:2
Alignment explanation
Indices: 740839--740879 Score: 73
Period size: 2 Copynumber: 20.0 Consensus size: 2
740829 AACTAAATTG
740839 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
740880 CAATGAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:745964 original size:20 final size:21
Alignment explanation
Indices: 745929--745970 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
745919 AACGTTATCA
745929 TCACTAGCATTATTTAGTTGC
1 TCACTAGCATTATTTAGTTGC
745950 TCACTAGCA-TATTTAGTTGC
1 TCACTAGCATTATTTAGTTGC
745970 T
1 T
745971 TATATGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (21 bp):
TCACTAGCATTATTTAGTTGC
Found at i:748018 original size:41 final size:41
Alignment explanation
Indices: 747961--748047 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 41
747951 TATCAATATA
*
747961 AGTTATGACATGGCATGCATAAGACTAGCTTATTGCTTATG
1 AGTTATGACATGGCATGCATAAGACTAGCTTATTACTTATG
* *
748002 AGTTATGCCATGGCATGCATAAGATTAGCTTATTACTTATG
1 AGTTATGACATGGCATGCATAAGACTAGCTTATTACTTATG
748043 AGTTA
1 AGTTA
748048 CGATTGACTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (41 bp):
AGTTATGACATGGCATGCATAAGACTAGCTTATTACTTATG
Found at i:751945 original size:17 final size:18
Alignment explanation
Indices: 751902--751946 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
751892 TTTATGAGGA
751902 AATTAGAATCTGTGAAAG
1 AATTAGAATCTGTGAAAG
* * *
751920 AATTGGAATCTGT-CAGG
1 AATTAGAATCTGTGAAAG
751937 AATTAGAATC
1 AATTAGAATC
751947 CAATTCTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (18 bp):
AATTAGAATCTGTGAAAG
Found at i:752567 original size:33 final size:33
Alignment explanation
Indices: 752529--752645 Score: 114
Period size: 32 Copynumber: 3.5 Consensus size: 33
752519 TAAACCCAAA
752529 CCGACCCAACCC-ATATATCACACTTAAAAAAAC
1 CCGACCCAACCCGA-ATATCACACTTAAAAAAAC
* *
752562 CCGA-CCAACCCGAATATTACACTTAAAAAAAT
1 CCGACCCAACCCGAATATCACACTTAAAAAAAC
*
752594 CCGACCCGACTCGACCAGAATATCACACTT-AAAAAAC
1 CCGACCC-A----ACCCGAATATCACACTTAAAAAAAC
* *
752631 TCGACCCGACCCGAA
1 CCGACCCAACCCGAA
752646 CAAAATAAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
32 34 0.49
33 7 0.10
34 1 0.01
37 12 0.17
38 15 0.22
ACGTcount: A:0.42, C:0.35, G:0.09, T:0.15
Consensus pattern (33 bp):
CCGACCCAACCCGAATATCACACTTAAAAAAAC
Found at i:752622 original size:38 final size:36
Alignment explanation
Indices: 752543--752641 Score: 116
Period size: 38 Copynumber: 2.8 Consensus size: 36
752533 CCCAACCCAT
*
752543 ATATCACACTT-AAAAAA---ACCCGACCAACCCGA
1 ATATCACACTTAAAAAAATCGACCCGACCAACCAGA
* *
752575 ATATTACACTTAAAAAAATCCGACCCGACTCGACCAGA
1 ATATCACACTTAAAAAAAT-CGACCCGAC-CAACCAGA
*
752613 ATATCACACTTAAAAAACTCGACCCGACC
1 ATATCACACTTAAAAAAATCGACCCGACC
752642 CGAACAAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
32 10 0.18
33 6 0.11
36 1 0.02
37 16 0.29
38 23 0.41
ACGTcount: A:0.43, C:0.32, G:0.08, T:0.16
Consensus pattern (36 bp):
ATATCACACTTAAAAAAATCGACCCGACCAACCAGA
Found at i:753446 original size:11 final size:10
Alignment explanation
Indices: 753398--753450 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
753388 CAACTTTGAT
753398 ATATTTAATA
1 ATATTTAATA
* *
753408 ACTATTTTATG
1 A-TATTTAATA
*
753419 ATATTTGATA
1 ATATTTAATA
*
753429 AAATTTAATA
1 ATATTTAATA
753439 ATAATTTAATA
1 AT-ATTTAATA
753450 A
1 A
753451 ATGTAATGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 17 0.50
11 17 0.50
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (10 bp):
ATATTTAATA
Found at i:754468 original size:23 final size:23
Alignment explanation
Indices: 754438--754521 Score: 125
Period size: 23 Copynumber: 3.7 Consensus size: 23
754428 CTCATATAAA
754438 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
754461 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* *
754484 TGTACCGAAGTGCCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
754507 TGCACC-ATAGTGCCA
1 TGCACCGA-AGTGCCA
754522 TATAAGATGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
22 1 0.02
23 55 0.98
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.19
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:755657 original size:64 final size:63
Alignment explanation
Indices: 755572--755796 Score: 283
Period size: 64 Copynumber: 3.5 Consensus size: 63
755562 TTGTTTAAGG
* * * ** * *
755572 TGCATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCA-TTAAATA-CAAACATCGAATAGGATTTA
*
755636 TGCATCGATGTATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCAT-CCCATTAAATACAAACATCGAATAGGATTTA
* *
755700 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCAAATATGATTTA
1 TGCATCGATGCATAAGGAGTGCATCGATGCAT-CCCATTAAATACAAACATCGAATAGGATTTA
*
755764 TGCATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 TGCATCGATGCATAAG-G-AGTGCATCGATGCAT
755797 ACCTCCATTA
Statistics
Matches: 145, Mismatches: 12, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
63 1 0.01
64 122 0.84
65 21 0.14
66 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (63 bp):
TGCATCGATGCATAAGGAGTGCATCGATGCATCCCATTAAATACAAACATCGAATAGGATTTA
Found at i:756425 original size:23 final size:23
Alignment explanation
Indices: 756387--756449 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
756377 ATTATTATAT
756387 GGCACT-ACGGTGCAATTCTACGC
1 GGCACTCA-GGTGCAATTCTACGC
* *
756410 GGTACTCAGGTGCAATTCTACGT
1 GGCACTCAGGTGCAATTCTACGC
*
756433 GGCACTTAGGTGCAATT
1 GGCACTCAGGTGCAATT
756450 ATATGAGCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 34 0.97
24 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTCAGGTGCAATTCTACGC
Found at i:757680 original size:20 final size:19
Alignment explanation
Indices: 757651--757766 Score: 108
Period size: 20 Copynumber: 5.8 Consensus size: 19
757641 AAATGACCAA
*
757651 CAAATTCGCAACGCGAATT
1 CAAATTCGCAACGCGAAGT
* *
757670 CAAATTTCGCAAC-CCATGTT
1 CAAA-TTCGCAACGCGAAG-T
**
757690 CCAAATTCGCAACTTGAGAGT
1 -CAAATTCGCAACGCGA-AGT
*
757711 CAAATTCGCAACACAGAAGT
1 CAAATTCGCAACGC-GAAGT
757731 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCG-AAGT
*
757751 CAGATTCGCAACGCGA
1 CAAATTCGCAACGCGA
757767 TACTCCAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
19 8 0.10
20 63 0.79
21 8 0.10
22 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (19 bp):
CAAATTCGCAACGCGAAGT
Found at i:761363 original size:23 final size:23
Alignment explanation
Indices: 761328--761372 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
761318 ATCAAGTACA
*
761328 ATAATATATTAGGTAGCGCTTAC
1 ATAATATAATAGGTAGCGCTTAC
* *
761351 ATAATGTAATAGGTAGTGCTTA
1 ATAATATAATAGGTAGCGCTTA
761373 TATTGACCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.36
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAC
Found at i:762069 original size:182 final size:182
Alignment explanation
Indices: 761756--762210 Score: 743
Period size: 182 Copynumber: 2.5 Consensus size: 182
761746 ACTTTTTTAC
*
761756 TACCGGTTTTGTTATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
* *
761821 TACATTTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCTAAAAG
66 TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAG
* * *
761886 TGTCGATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCTCTT
131 TGTCGATACTTATAATAAAGTATCGACACTATCAACATATCCAGTAGCGCTT
*
761938 TACCGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTCATGGATCGA
1 TACCGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
762003 TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATT-TCAAAA
66 TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCT-AAAA
*
762067 GTGTCGATACTTATAATAAAGTATCGACACTATCAACATATCTAGTAGCGCTT
130 GTGTCGATACTTATAATAAAGTATCGACACTATCAACATATCCAGTAGCGCTT
* ** * * *
762120 TACCTGTTTTGTCATTTATAGATCGGTTTTGTCATTTTTTTACATGTTATATTGTTAT-GATCGA
1 TACCGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
* *
762184 TATATTTTTATAAATTATCGACACTTT
66 TACATTTTTATAAAGTATCGACACTTT
762211 CAATATATCT
Statistics
Matches: 255, Mismatches: 17, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
181 32 0.13
182 223 0.87
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.44
Consensus pattern (182 bp):
TACCGGTTTTGTCATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
TACATTTTTATAAAGTATCGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAG
TGTCGATACTTATAATAAAGTATCGACACTATCAACATATCCAGTAGCGCTT
Found at i:762279 original size:111 final size:112
Alignment explanation
Indices: 762082--762322 Score: 403
Period size: 111 Copynumber: 2.2 Consensus size: 112
762072 GATACTTATA
* *
762082 ATAAAGTATCGACACTATCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGATCGGT
1 ATAAAGTATCGACACTTTCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
762147 TTTGTCATTTTTTTACATGTTATATTGTTATG-ATCGATATATTTTT
66 TTTGTCATATTTTTACATGTTATATTGTTATGAATCGATACATTTTT
* * *
762193 ATAAATTATCGACACTTTCAATATATCTAGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
762258 TTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTT
66 TTTGTCATATTTTTACATGTTATATTGTTATGAATCGATACATTTTT
762305 ATAAAGTATCGACACTTT
1 ATAAAGTATCGACACTTT
762323 ATTGGCGCTA
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
111 90 0.75
112 30 0.25
ACGTcount: A:0.27, C:0.14, G:0.13, T:0.46
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATATTTTTACATGTTATATTGTTATGAATCGATACATTTTT
Found at i:762442 original size:293 final size:294
Alignment explanation
Indices: 761900--762504 Score: 957
Period size: 293 Copynumber: 2.1 Consensus size: 294
761890 GATACTTATA
* * *
761900 ATAAAGTATCGACACTTTCAACATATCCGGTAGCTCTTTACCGGTTTTGTCATTTCGAGACCGGT
1 ATAAAGTATCGACACTTTCAACATATCCAGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGT
*
761965 TTTGTCATATTTTTACCTGTTATATTGTCATGGATCGATACATTTTTATAAAGTATCGACACTTT
66 TTTGTCATATTTTTACCTGTTATATTGTCATGAATCGATACATTTTTATAAAGTATCGACACTTT
762030 ATTAGCGCTATAACTTCTTCTCTTTTAAATTTCAAAAGTGTCGATACTTATAATAAAGTATCGAC
131 ATTAGCGCTATAACTTCTTCTCTTTTAAATTTCAAAAGTGTCGATACTTATAATAAAGTATCGAC
* *
762095 ACTATCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGATCGGTTTTGTCATTTTTT
196 ACTATCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCATATTTT
*
762160 TACATGTTATATTGTTAT-GATCGATATATTTTT
261 TACATGTTATATTGTTATGGATCGATACATTTTT
* * * ** *
762193 ATAAATTATCGACACTTTCAATATATCTAGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAACATATCCAGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGT
*
762258 TTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTTATAAAGTATCGACACTTT
66 TTTGTCATATTTTTACCTGTTATATTGTCATGAATCGATACATTTTTATAAAGTATCGACACTTT
* * * *
762323 ATTGGCGCTATAACTTCTTTTGTTTTAAA-TTCTAAAAGTTTCGATACTTATAATAAAGTATCGA
131 ATTAGCGCTATAACTTCTTCTCTTTTAAATTTC-AAAAGTGTCGATACTTATAATAAAGTATCGA
* * *
762387 CACTTTCAACATATCTGGTAGCTCTTTA-CTGATTTTGTCATTT-TGAGACCGGTTTTGTCATAT
195 CACTATCAACATATCTAGTAGCGCTTTACCTG-TTTTGTCATTTAT-AGACCGGTTTTGTCATAT
762450 TTTTACATGTTATATTGTTATGGATCGATACATTTTT
258 TTTTACATGTTATATTGTTATGGATCGATACATTTTT
*
762487 ATAAAGTATCGACGCTTT
1 ATAAAGTATCGACACTTT
762505 ATTAACGCTA
Statistics
Matches: 285, Mismatches: 23, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
292 7 0.02
293 248 0.87
294 30 0.11
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (294 bp):
ATAAAGTATCGACACTTTCAACATATCCAGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGT
TTTGTCATATTTTTACCTGTTATATTGTCATGAATCGATACATTTTTATAAAGTATCGACACTTT
ATTAGCGCTATAACTTCTTCTCTTTTAAATTTCAAAAGTGTCGATACTTATAATAAAGTATCGAC
ACTATCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCATATTTT
TACATGTTATATTGTTATGGATCGATACATTTTT
Found at i:762507 original size:182 final size:181
Alignment explanation
Indices: 762193--762869 Score: 1029
Period size: 182 Copynumber: 3.7 Consensus size: 181
762183 ATATATTTTT
* * *
762193 ATAAATTATCGACACTTTCAATATATCTAGTAGCGCTTTACTTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAACATATCTGGTAGCGCTTTAC-TGTTTTGTCATTTATAGACCGGT
*
762258 TTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTTATAAAGTATCGACACTTT
65 TTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
* * * *
762323 ATTGGCGCTATAACTTCTTTTGTTTTAAATTCTAAAAGTTTCGATACTTATA
130 ATTAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAGTGTCGATACTTATA
*
762375 ATAAAGTATCGACACTTTCAACATATCTGGTAGCTCTTTACTGATTTTGTCATTT-TGAGACCGG
1 ATAAAGTATCGACACTTTCAACATATCTGGTAGCGCTTTACTG-TTTTGTCATTTAT-AGACCGG
* *
762439 TTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACGCTT
64 TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTT
* *
762504 TATTAACGCTATAACTTCTTCTCTTTTAAATTCTAAAAATGTCGATACTTATA
129 TATTAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAGTGTCGATACTTATA
* * *
762557 ATAAAGTATCGACACTTTCAACATATCTGGTAGCTCTTTACCGGTTTTGTCATTT-TGAGACCGA
1 ATAAAGTATCGACACTTTCAACATATCTGGTAGCGCTTTA-CTGTTTTGTCATTTAT-AGACCGG
762621 TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTT
64 TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTT
* * *
762686 TATTAGTGGTATAACTTCTTCTCTTTTAAATT-TCAAAAGTGTCGATATTTATA
129 TATTAGCGCTATAACTTCTTCTCTTTTAAATTCT-AAAAGTGTCGATACTTATA
* *
762739 ATAAAGTATCGACACTATCAACATATAC-GGTAGCGCTTTACCTGTTTTGTCATTTATAGATCGG
1 ATAAAGTATCGACACTTTCAACATAT-CTGGTAGCGCTTTA-CTGTTTTGTCATTTATAGACCGG
* * *
762803 TTTTGTCATTTTTTTTACCTGCTATATTGTTATGGATCGATACATTTTTATAAAATATCGACACT
64 TTTTGTCA-TATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
762868 TT
128 TT
762870 CAATATATTC
Statistics
Matches: 458, Mismatches: 30, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
181 4 0.01
182 395 0.86
183 59 0.13
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (181 bp):
ATAAAGTATCGACACTTTCAACATATCTGGTAGCGCTTTACTGTTTTGTCATTTATAGACCGGTT
TTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTA
TTAGCGCTATAACTTCTTCTCTTTTAAATTCTAAAAGTGTCGATACTTATA
Found at i:762651 original size:475 final size:476
Alignment explanation
Indices: 761761--762686 Score: 1588
Period size: 475 Copynumber: 1.9 Consensus size: 476
761751 TTTACTACCG
* * *
761761 GTTTTGTTATTTCGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACAT
1 GTTTTGTCATTTAGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACAT
761826 TTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCTAAAAGTGTCG
66 TTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCTAAAAGTGTCG
*
761891 ATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCTCTTTACCGGTTTTGTCATTTC
131 ATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCTCTTTACCGATTTTGTCATTTC
*
761956 GAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTCATGGATCGATACATTTTTATAAAGTAT
196 GAGACCGGTTTTGTCATATTTTTACATGTTATATTGTCATGGATCGATACATTTTTATAAAGTAT
* *
762021 CGACACTTTATTAGCGCTATAACTTCTTCTCTTTTAAATTTCAAAAGTGTCGATACTTATAATAA
261 CGACACTTTATTAACGCTATAACTTCTTCTCTTTTAAATTTCAAAAATGTCGATACTTATAATAA
* * *
762086 AGTATCGACACTATCAACATATCTAGTAGCGCTTTACCTGTTTTGTCATTTATAGATCGGTTTTG
326 AGTATCGACACTATCAACATATCTAGTAGCGCTTTACCGGTTTTGTCATTTATAGACCGATTTTG
* * *
762151 TCATTTTTTTACATGTTATATTGTTAT-GATCGATATATTTTTATAAATTATCGACACTTTCAAT
391 TCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTCAAT
762215 ATATCTAGTAGCGCTTTACTT
456 ATATCTAGTAGCGCTTTACTT
*
762236 GTTTTGTCATTTATAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACAT
1 GTTTTGTCATTTAGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACAT
* *
762301 TTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTGTTTTAAATTCTAAAAGTTTCG
66 TTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCTAAAAGTGTCG
* * *
762366 ATACTTATAATAAAGTATCGACACTTTCAACATATCTGGTAGCTCTTTACTGATTTTGTCATTTT
131 ATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCTCTTTACCGATTTTGTCATTTC
*
762431 GAGACCGGTTTTGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTAT
196 GAGACCGGTTTTGTCATATTTTTACATGTTATATTGTCATGGATCGATACATTTTTATAAAGTAT
*
762496 CGACGCTTTATTAACGCTATAACTTCTTCTCTTTTAAA-TTCTAAAAATGTCGATACTTATAATA
261 CGACACTTTATTAACGCTATAACTTCTTCTCTTTTAAATTTC-AAAAATGTCGATACTTATAATA
* * *
762560 AAGTATCGACACTTTCAACATATCTGGTAGCTCTTTACCGGTTTTGTCATTT-TGAGACCGATTT
325 AAGTATCGACACTATCAACATATCTAGTAGCGCTTTACCGGTTTTGTCATTTAT-AGACCGATTT
*
762624 TGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
389 TGTCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
762687 ATTAGTGGTA
Statistics
Matches: 423, Mismatches: 25, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
474 4 0.01
475 388 0.92
476 31 0.07
ACGTcount: A:0.27, C:0.15, G:0.13, T:0.44
Consensus pattern (476 bp):
GTTTTGTCATTTAGAGACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACAT
TTTTATAAAGTATCGACACTTTATTGGCGCTATAACTTCTTTTCTTTTAAATTCTAAAAGTGTCG
ATACTTATAATAAAGTATCGACACTTTCAACATATCCGGTAGCTCTTTACCGATTTTGTCATTTC
GAGACCGGTTTTGTCATATTTTTACATGTTATATTGTCATGGATCGATACATTTTTATAAAGTAT
CGACACTTTATTAACGCTATAACTTCTTCTCTTTTAAATTTCAAAAATGTCGATACTTATAATAA
AGTATCGACACTATCAACATATCTAGTAGCGCTTTACCGGTTTTGTCATTTATAGACCGATTTTG
TCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTTCAAT
ATATCTAGTAGCGCTTTACTT
Found at i:762943 original size:295 final size:304
Alignment explanation
Indices: 762557--763180 Score: 867
Period size: 295 Copynumber: 2.1 Consensus size: 304
762547 GATACTTATA
*
762557 ATAAAGTATCGACACTTTCAACATATCTGGTAGCTCTTTACCGGTTTTGTCATTTTGAGACCGAT
1 ATAAAGTATCGACACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATTTTGAGACCGAT
762622 TTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
66 TTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
* * *
762687 ATTAGTGGTATAACTTC-TTC-TCT-TT-T-AAA-T-T-T-C-AAAAGTGTCGATATTTATAATA
131 ATTAGCGCTATAACTTCTTTCTTCTATTCTGAAAGTGTATACTAAAAGTGTCGATACTTATAATA
* * * *
762742 AAGTATCGACACTATCAACATATACGGTAGCGCTTTACCTGTTTTGTCATTTATAGATCGGTTTT
196 AAGTATCGACACTATCAACATACACGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGTTTT
* *
762807 GTCATTTTTTTTACCTGCTATATTGTTATGGATCGATACATTTTT
261 GTCA-TATTTTTACCTGCTATATTATTATGGATCGATACATTTTT
* * *
762852 ATAAAATATCGACACTTTCAATATAT-TCGGTAGCGCTTTACCTGTTTTGTCATTTAT-AGACCG
1 ATAAAGTATCGACACTTTCAACATATCT-GGTAGCGCTTTACCGGTTTTGTCATTT-TGAGACCG
*
762915 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
64 ATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACT
* *
762980 TTATTGGCGCTATAACTTCTTTTCTTTTAAATTCTGAAAGTGTCGATACTTTAAAAGTGTCGATA
129 TTATTAGCGCTATAACTTC-TTTCTTCT--ATTCTGAAAGTGT--ATAC--TAAAAGTGTCGATA
* * * * * *
763045 CTTATAATAAAGTATCGACACTTTCAACATACCCGGTAGCTCTTTACCGGTTTTTTCATTTCGAT
187 CTTATAATAAAGTATCGACACTATCAACATACACGGTAGCGCTTTACCGGTTTTGTCATTTAGAG
*
763110 ACCGGTTTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTTT
252 ACCGGTTTTGTCATATTTTTACCTGCTATATTATTATGGATCGATACATTTTT
763163 ATAAAGTATCGACACTTT
1 ATAAAGTATCGACACTTT
763181 ATTAGCGCTT
Statistics
Matches: 286, Mismatches: 24, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
294 1 0.00
295 135 0.47
296 1 0.00
297 3 0.01
298 2 0.01
301 2 0.01
302 1 0.00
303 3 0.01
304 1 0.00
305 1 0.00
308 1 0.00
309 1 0.00
311 54 0.19
312 80 0.28
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (304 bp):
ATAAAGTATCGACACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATTTTGAGACCGAT
TTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
ATTAGCGCTATAACTTCTTTCTTCTATTCTGAAAGTGTATACTAAAAGTGTCGATACTTATAATA
AAGTATCGACACTATCAACATACACGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGTTTT
GTCATATTTTTACCTGCTATATTATTATGGATCGATACATTTTT
Found at i:762980 original size:112 final size:113
Alignment explanation
Indices: 762739--762981 Score: 416
Period size: 113 Copynumber: 2.2 Consensus size: 113
762729 GATATTTATA
* *
762739 ATAAAGTATCGACACTATCAACATATACGGTAGCGCTTTACCTGTTTTGTCATTTATAGATCGGT
1 ATAAAGTATCGACACTTTCAACATATACGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
762804 TTTGTCATTTTTTTTACCTGCTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTATTTTTACCTGCTATATTGTTATGGATCGATACATTTTT
* * *
762852 ATAAAATATCGACACTTTCAATATATTCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAACATATACGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
762917 TTTGTCA-TATTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTATTTTTACCTGCTATATTGTTATGGATCGATACATTTTT
762964 ATAAAGTATCGACACTTT
1 ATAAAGTATCGACACTTT
762982 ATTGGCGCTA
Statistics
Matches: 122, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
112 55 0.45
113 67 0.55
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (113 bp):
ATAAAGTATCGACACTTTCAACATATACGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTATTTTTACCTGCTATATTGTTATGGATCGATACATTTTT
Found at i:763132 original size:20 final size:20
Alignment explanation
Indices: 763085--763132 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
763075 ACCCGGTAGC
*
763085 TCTTTACCGGTTTTTTCATT
1 TCTTTACCGGTTTTGTCATT
**
763105 TCGATACCGGTTTTGTCATAT
1 TCTTTACCGGTTTTGTCAT-T
763126 T-TTTACC
1 TCTTTACC
763133 TGTTATATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.15, C:0.21, G:0.12, T:0.52
Consensus pattern (20 bp):
TCTTTACCGGTTTTGTCATT
Found at i:763198 original size:199 final size:199
Alignment explanation
Indices: 762852--763229 Score: 603
Period size: 199 Copynumber: 1.9 Consensus size: 199
762842 ATACATTTTT
* ** * *
762852 ATAAAATATCGACACTTTCAATATATTCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAATATCGACACTTTCAACATACCCGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGT
*
762917 TTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
66 TTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTTTATAAAGTATCGACACTTT
* * ** *
762982 ATTGGCGCTATAACTTCTTTTCTTTTAAATTCTGAAAGTGTCGATACTTTAAAAGTGTCGATACT
131 ATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCAATACTTTAAAAGTGTCGATACT
763047 TATA
196 TATA
* * * * *
763051 ATAAAGTATCGACACTTTCAACATACCCGGTAGCTCTTTACCGGTTTTTTCATTTCGATACCGGT
1 ATAAAATATCGACACTTTCAACATACCCGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGT
763116 TTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTTTATAAAGTATCGACACTTT
66 TTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTTTATAAAGTATCGACACTTT
*
763181 ATTAGCGCTTTAACTTCTTCTCTTTTAAATTCCAAAAGTGTCAATACTT
131 ATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCAATACTT
763230 ATAATAAAGT
Statistics
Matches: 162, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
199 162 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (199 bp):
ATAAAATATCGACACTTTCAACATACCCGGTAGCGCTTTACCGGTTTTGTCATTTAGAGACCGGT
TTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTTTATAAAGTATCGACACTTT
ATTAGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCAATACTTTAAAAGTGTCGATACT
TATA
Found at i:763339 original size:182 final size:182
Alignment explanation
Indices: 763032--763362 Score: 545
Period size: 182 Copynumber: 1.8 Consensus size: 182
763022 TCGATACTTT
* * * *
763032 AAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATACCCGGTAGCTCTTTACCGGTT
1 AAAAGTGTCAATACTTATAATAAAGTATCGACACTATCAACATACCCGGTAACGCTTTACCGGTT
* * *
763097 TTTTCATTTCGATACCGGTTTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTT
66 TTGTCATTTAGAGACCGGTTTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTT
763162 TATAAAGTATCGACACTTTATTAGCGCTTTAACTTCTTCTCTTTTAAATTCC
131 TATAAAGTATCGACACTTTATTAGCGCTTTAACTTCTTCTCTTTTAAATTCC
* *
763214 AAAAGTGTCAATACTTATAATAAAGTATCGACACTATCAACATATCCGGTAACGCTTTACCTGTT
1 AAAAGTGTCAATACTTATAATAAAGTATCGACACTATCAACATACCCGGTAACGCTTTACCGGTT
* * * *
763279 TTGTCATTTATAGACCGGTTTTGTCATTTTTTTACTTGTTATATTGTTATGGATCGATACATTTT
66 TTGTCATTTAGAGACCGGTTTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTT
763344 TATAAAGTATCGACACTTT
131 TATAAAGTATCGACACTTT
763363 CAATATATCT
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
182 136 1.00
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (182 bp):
AAAAGTGTCAATACTTATAATAAAGTATCGACACTATCAACATACCCGGTAACGCTTTACCGGTT
TTGTCATTTAGAGACCGGTTTTGTCATATTTTTACCTGTTATATTATTATGGATCGATACATTTT
TATAAAGTATCGACACTTTATTAGCGCTTTAACTTCTTCTCTTTTAAATTCC
Found at i:763472 original size:113 final size:112
Alignment explanation
Indices: 763233--763694 Score: 753
Period size: 113 Copynumber: 4.1 Consensus size: 112
763223 AATACTTATA
* * *
763233 ATAAAGTATCGACACTATCAACATATCCGGTAACGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
763298 TTTGTCATTTTTTTACTTGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* * *
763345 ATAAAGTATCGACACTTTCAATATATCTGGTAGCTCTTTACCTGTTTTGTCATTTATAGATCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
763410 TTTGTCATTTTTTTTACCTATTATATTGTTATGGATTGATACATTTTT
66 TTTGTCA-TTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
763458 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
763523 TTTGTCATTTTTTTTACATGTTATATTGTTATGGATCGATATATTTTT
66 TTTGTCA-TTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
* * *
763571 ATAAAGTATCGATACTTTCAATATATCTGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* * *
763636 TTTGTCATTTTTTTACCTGTTATATTGTTATAGATCAATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
763683 ATAAAGTATCGA
1 ATAAAGTATCGA
763695 TACAAACCGA
Statistics
Matches: 327, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
112 115 0.35
113 212 0.65
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
Found at i:763649 original size:225 final size:225
Alignment explanation
Indices: 763233--763694 Score: 791
Period size: 225 Copynumber: 2.1 Consensus size: 225
763223 AATACTTATA
763233 ATAAAGTATCGACACTATCAACATATCCGGTAACGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTATCAACATATCCGGTAACGCTTTACCTGTTTTGTCATTTATAGACCGGT
*
763298 TTTGTCATTTTTTTACTTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
66 TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
* *
763363 CAATATATCTGGTAGCTCTTTACCTGTTTTGTCATTTATAGATCGGTTTTGTCATTTTTTTTACC
131 CAATATATCTGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCATTTTTTTTACC
* **
763428 TATTATATTGTTATGGATTGATACATTTTT
196 TATTATATTGTTATAGATCAATACATTTTT
* * *
763458 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTATCAACATATCCGGTAACGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
763523 TTTGTCATTTTTTTTACATGTTATATTGTTATGGATCGATATATTTTTATAAAGTATCGATACTT
66 TTTGTCA-TTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTT
763588 TCAATATATCTGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCA-TTTTTTTAC
130 TCAATATATCTGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCATTTTTTTTAC
* *
763652 CTGTTATATTGTTATAGATCAATATATTTTT
195 CTATTATATTGTTATAGATCAATACATTTTT
763683 ATAAAGTATCGA
1 ATAAAGTATCGA
763695 TACAAACCGA
Statistics
Matches: 223, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
225 116 0.52
226 107 0.48
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (225 bp):
ATAAAGTATCGACACTATCAACATATCCGGTAACGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
CAATATATCTGGTAGCACTTTACCTGTTTTGTCATTTATAGACCGGTTTTGTCATTTTTTTTACC
TATTATATTGTTATAGATCAATACATTTTT
Found at i:768039 original size:59 final size:60
Alignment explanation
Indices: 767946--768067 Score: 201
Period size: 59 Copynumber: 2.0 Consensus size: 60
767936 CAGGCAGGTC
* *
767946 CATCTGGTTTCGGAACATCAGCCACGACAATGCCACCGTTCTATTTCAACCAGCA-GATG
1 CATCTGGTTTCGGAACATCAACCACGACAATGCCACCATTCTATTTCAACCAGCAGGATG
* *
768005 CATCTGGTTTCGGAACATCAACCACGACACTGCCACCATTTTATTTCAACCAGCAGGATG
1 CATCTGGTTTCGGAACATCAACCACGACAATGCCACCATTCTATTTCAACCAGCAGGATG
768065 CAT
1 CAT
768068 ATCCAGCGTA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
59 51 0.88
60 7 0.12
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (60 bp):
CATCTGGTTTCGGAACATCAACCACGACAATGCCACCATTCTATTTCAACCAGCAGGATG
Found at i:771999 original size:43 final size:41
Alignment explanation
Indices: 771913--771995 Score: 123
Period size: 40 Copynumber: 2.0 Consensus size: 41
771903 TGAGAATTCG
*
771913 TTTATGTTCGTTTATTTATTAAATGAACGAACATGAACAAGAT
1 TTTATGTTCGTTTA--TATTAAATGAACGAACATGAAAAAGAT
771956 TTTATGTTCGTTTA-ATTAAATGAACGAACATGAATAAAGA
1 TTTATGTTCGTTTATATTAAATGAACGAACATGAA-AAAGA
771996 GATTGTTCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
40 20 0.53
41 4 0.11
43 14 0.37
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.37
Consensus pattern (41 bp):
TTTATGTTCGTTTATATTAAATGAACGAACATGAAAAAGAT
Found at i:777634 original size:20 final size:20
Alignment explanation
Indices: 777609--777654 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
777599 GGATCGAGAC
777609 GAGGCAAGACTATTGATGTT
1 GAGGCAAGACTATTGATGTT
777629 GAGGCAAGACTATTGATGTT
1 GAGGCAAGACTATTGATGTT
777649 GAGGCA
1 GAGGCA
777655 GCCGAACCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.33, T:0.26
Consensus pattern (20 bp):
GAGGCAAGACTATTGATGTT
Found at i:786400 original size:35 final size:35
Alignment explanation
Indices: 786353--786445 Score: 143
Period size: 35 Copynumber: 2.7 Consensus size: 35
786343 AACACAATCA
786353 TCAATTACATTCTAAACCCCAAATTCTAAAATACT
1 TCAATTACATTCTAAACCCCAAATTCTAAAATACT
* *
786388 TCAATTATATTCTAAACCTCAAATTCTAAAATACT
1 TCAATTACATTCTAAACCCCAAATTCTAAAATACT
* *
786423 TCAATTACATGC-CAACCCCAAAT
1 TCAATTACATTCTAAACCCCAAAT
786446 CTATAATTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 9 0.17
35 43 0.83
ACGTcount: A:0.42, C:0.26, G:0.01, T:0.31
Consensus pattern (35 bp):
TCAATTACATTCTAAACCCCAAATTCTAAAATACT
Found at i:786807 original size:147 final size:149
Alignment explanation
Indices: 786589--786877 Score: 474
Period size: 147 Copynumber: 1.9 Consensus size: 149
786579 CACAATTCAA
786589 TTTATAAAATAGTTAACTCAAAATTTTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGTCGAA
1 TTTATAAAATAGTTAACTCAAAA-TTTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGTCGAA
* * * * * *
786654 TTGAATTGAATTTTTGAGTTTCTGTTTAAATTTAATTATAAATATTTGTCATATTATAATTTTAT
65 TTGAATTAAATTTTTGAGTTTCTATTTAAATTTAATTATAAATATTTATAATACTATAATATTAT
* *
786719 TTTATTCTAATTCAGTTCCG
130 TTGATTATAATTCAGTTCCG
*
786739 TTTATAAAATAGTTGACTC-AAA-TTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGTCGAAT
1 TTTATAAAATAGTTAACTCAAAATTTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGTCGAAT
786802 TGAATTAAATTTTTGAGTTTCTATTTAAATTTAATTATAAATATTTATAATACTATAATATTATT
66 TGAATTAAATTTTTGAGTTTCTATTTAAATTTAATTATAAATATTTATAATACTATAATATTATT
786867 TGATTATAATT
131 TGATTATAATT
786878 TAAATAGTTT
Statistics
Matches: 130, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
147 109 0.84
149 3 0.02
150 18 0.14
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.49
Consensus pattern (149 bp):
TTTATAAAATAGTTAACTCAAAATTTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGTCGAAT
TGAATTAAATTTTTGAGTTTCTATTTAAATTTAATTATAAATATTTATAATACTATAATATTATT
TGATTATAATTCAGTTCCG
Found at i:787447 original size:35 final size:35
Alignment explanation
Indices: 787364--787457 Score: 107
Period size: 35 Copynumber: 2.7 Consensus size: 35
787354 AATGAATTAT
** * * *
787364 GAATTTGGGGTTGGGTATGTAATTGATGTATTTTG
1 GAATTTGGGGTTTAGAATGTAATTGAAGCATTTTG
** *
787399 GAATTTGAAGTTTAGAATATAATTGAAGCATTTTG
1 GAATTTGGGGTTTAGAATGTAATTGAAGCATTTTG
*
787434 GAATTTGGGGTTTAAAATGTAATT
1 GAATTTGGGGTTTAGAATGTAATT
787458 AATGAATGTG
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.30, C:0.01, G:0.27, T:0.43
Consensus pattern (35 bp):
GAATTTGGGGTTTAGAATGTAATTGAAGCATTTTG
Found at i:800318 original size:81 final size:81
Alignment explanation
Indices: 800183--800345 Score: 326
Period size: 81 Copynumber: 2.0 Consensus size: 81
800173 CAACCGTTAA
800183 TAGATTAGGTGACGTGGTATTATAGTACAATTACACATTTGGTCTATGTTATTTACGTATTCTTT
1 TAGATTAGGTGACGTGGTATTATAGTACAATTACACATTTGGTCTATGTTATTTACGTATTCTTT
800248 TAATTTAGTCATACTT
66 TAATTTAGTCATACTT
800264 TAGATTAGGTGACGTGGTATTATAGTACAATTACACATTTGGTCTATGTTATTTACGTATTCTTT
1 TAGATTAGGTGACGTGGTATTATAGTACAATTACACATTTGGTCTATGTTATTTACGTATTCTTT
800329 TAATTTAGTCATACTT
66 TAATTTAGTCATACTT
800345 T
1 T
800346 TAATAAATTA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (81 bp):
TAGATTAGGTGACGTGGTATTATAGTACAATTACACATTTGGTCTATGTTATTTACGTATTCTTT
TAATTTAGTCATACTT
Found at i:804324 original size:14 final size:14
Alignment explanation
Indices: 804307--804356 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
804297 GACTAGTTTA
804307 TTGTATGGTTAGGT
1 TTGTATGGTTAGGT
** *
804321 TTGTATATTTAGTTT
1 TTGTATGGTTAG-GT
804336 CTTGTATGGTTAGGT
1 -TTGTATGGTTAGGT
804351 TTGTAT
1 TTGTAT
804357 ATTTAGTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 16 0.57
15 2 0.07
16 10 0.36
ACGTcount: A:0.16, C:0.02, G:0.26, T:0.56
Consensus pattern (14 bp):
TTGTATGGTTAGGT
Found at i:804341 original size:30 final size:30
Alignment explanation
Indices: 804300--804369 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
804290 TTAACTTGAC
*
804300 TAGTTTATTGTATGGTTAGGTTTGTATATT
1 TAGTTTCTTGTATGGTTAGGTTTGTATATT
804330 TAGTTTCTTGTATGGTTAGGTTTGTATATT
1 TAGTTTCTTGTATGGTTAGGTTTGTATATT
804360 TAGTTTCTTG
1 TAGTTTCTTG
804370 GAACATTTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.17, C:0.03, G:0.23, T:0.57
Consensus pattern (30 bp):
TAGTTTCTTGTATGGTTAGGTTTGTATATT
Found at i:804342 original size:16 final size:16
Alignment explanation
Indices: 804321--804369 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
804311 ATGGTTAGGT
804321 TTGTATATTTAGTTTC
1 TTGTATATTTAGTTTC
** *
804337 TTGTATGGTTAG-GT-
1 TTGTATATTTAGTTTC
804351 TTGTATATTTAGTTTC
1 TTGTATATTTAGTTTC
804367 TTG
1 TTG
804370 GAACATTTTG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 10 0.40
15 2 0.08
16 13 0.52
ACGTcount: A:0.16, C:0.04, G:0.20, T:0.59
Consensus pattern (16 bp):
TTGTATATTTAGTTTC
Found at i:804362 original size:14 final size:14
Alignment explanation
Indices: 804315--804362 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
804305 TATTGTATGG
804315 TTAGGTTTGTATAT
1 TTAGGTTTGTATAT
* **
804329 TTAGTTTCTTGTATGG
1 TTAG-GT-TTGTATAT
804345 TTAGGTTTGTATAT
1 TTAGGTTTGTATAT
804359 TTAG
1 TTAG
804363 TTTCTTGGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 14 0.54
15 2 0.08
16 10 0.38
ACGTcount: A:0.19, C:0.02, G:0.23, T:0.56
Consensus pattern (14 bp):
TTAGGTTTGTATAT
Found at i:807002 original size:24 final size:24
Alignment explanation
Indices: 806975--807021 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
806965 TTTTATGTTT
*
806975 GTTCCTTTATATCTGTTCGTTTAC
1 GTTCCTTCATATCTGTTCGTTTAC
* * *
806999 GTTCGTTCATTTGTGTTCGTTTA
1 GTTCCTTCATATCTGTTCGTTTA
807022 TTATTTTAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.55
Consensus pattern (24 bp):
GTTCCTTCATATCTGTTCGTTTAC
Found at i:813930 original size:304 final size:304
Alignment explanation
Indices: 813394--814267 Score: 1532
Period size: 304 Copynumber: 2.9 Consensus size: 304
813384 ACTTTCAGTC
* * * * * * * *
813394 TGTTTTGGGTAGAAAGGTCAGTTTTTGAGGGAATTAGACTCGAGGTATCTCAACACTTCTTTATA
1 TGTTTTGGGCAGAAATGTTAATTTTTGAGGGAATTAGAATTGAGGTACCCCAACACTTCTTTATA
*
813459 TCATCAAATAAGACTACAAGTGGAACAATATTAATGTTAATTCAAACGTAGAAACCAAATAATTA
66 TCATCAAATAAGACTACAAGTGGAACGATATTAATGTTAATTCAAACGTAGAAACCAAATAATTA
* * ** * *
813524 GGGATAAATAAGACTAGCCTTGTTTGATGCTTGGGAAACAATTCGAACACCCGAGTTCCTTTAGA
131 GGGACAAATAAGACTAGTCTTGTTTGATTTTTGGGAAACGATTCGGACACCCGAGTTCCTTTAGA
*
813589 AAAGCTAGTGGAGTCGAAAGTATAGATTTAGTCCGGATATATCCTTAGGTAGGGCGCAAGACCCT
196 AAAGCTAGTGGAGTCGAAAGTATAGATGTAGTCCGGATATATCCTTAGGTAGGGCGCAAGACCCT
813654 TAAAATCAACTAACTAAGTCCAGATAGTATTGATACTTTTTGTT
261 TAAAATCAACTAACTAAGTCCAGATAGTATTGATACTTTTTGTT
813698 TGTTTTGGGCAGAAATGTTAATTTTTGAGGGAATTAGAATTGAGGTACCCCAACACTTCTTTATA
1 TGTTTTGGGCAGAAATGTTAATTTTTGAGGGAATTAGAATTGAGGTACCCCAACACTTCTTTATA
*
813763 TCATCAAATAAGACTACAAGTGGAACGATATTAATGTTAATTCAAACGTAGAAACTAAATAATTA
66 TCATCAAATAAGACTACAAGTGGAACGATATTAATGTTAATTCAAACGTAGAAACCAAATAATTA
813828 GGGACAAATAAGACTAGTCTTGTTTGATTTTTGGGAAACGATTCGGACACCCGAGTTCCTTTAGA
131 GGGACAAATAAGACTAGTCTTGTTTGATTTTTGGGAAACGATTCGGACACCCGAGTTCCTTTAGA
813893 AAAGCTAGTGGAGTCGAAAGTATAGATGTAGTCCGGATATATCCTTAGGTAGGGCGCAAGACCCT
196 AAAGCTAGTGGAGTCGAAAGTATAGATGTAGTCCGGATATATCCTTAGGTAGGGCGCAAGACCCT
813958 TAAAATCAACTAACTAAGTCCAGATAGTATTGATACTTTTTGTT
261 TAAAATCAACTAACTAAGTCCAGATAGTATTGATACTTTTTGTT
*
814002 TGTTTTGGGCAGAAATGTTAATTTTCGAGGGAATTAGAATTGAGGTACCCCAACACTTCTTTATA
1 TGTTTTGGGCAGAAATGTTAATTTTTGAGGGAATTAGAATTGAGGTACCCCAACACTTCTTTATA
814067 TCATCAAATAAGACTACAAGTGGAACGATATTAATGTTAATTCAAACGTAGAAACCAAATAATTA
66 TCATCAAATAAGACTACAAGTGGAACGATATTAATGTTAATTCAAACGTAGAAACCAAATAATTA
* *
814132 GGGACAAATAAGACTAGTCTTGTTTGATTTTTGGGAAATGATTCGGACATCCGAGTTCCTTTAGA
131 GGGACAAATAAGACTAGTCTTGTTTGATTTTTGGGAAACGATTCGGACACCCGAGTTCCTTTAGA
* * * *
814197 AAAGCTAGTGGAGTCGAAAGTATAGATGTAATTCAGATATATCCTTAGGTAGGGCGCAAGGCCCT
196 AAAGCTAGTGGAGTCGAAAGTATAGATGTAGTCCGGATATATCCTTAGGTAGGGCGCAAGACCCT
814262 TAAAAT
261 TAAAAT
814268 TGACTAAGGT
Statistics
Matches: 545, Mismatches: 25, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
304 545 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (304 bp):
TGTTTTGGGCAGAAATGTTAATTTTTGAGGGAATTAGAATTGAGGTACCCCAACACTTCTTTATA
TCATCAAATAAGACTACAAGTGGAACGATATTAATGTTAATTCAAACGTAGAAACCAAATAATTA
GGGACAAATAAGACTAGTCTTGTTTGATTTTTGGGAAACGATTCGGACACCCGAGTTCCTTTAGA
AAAGCTAGTGGAGTCGAAAGTATAGATGTAGTCCGGATATATCCTTAGGTAGGGCGCAAGACCCT
TAAAATCAACTAACTAAGTCCAGATAGTATTGATACTTTTTGTT
Found at i:816169 original size:64 final size:62
Alignment explanation
Indices: 816100--816278 Score: 193
Period size: 64 Copynumber: 2.8 Consensus size: 62
816090 TGGGACACTT
*
816100 AGTGCATCGGTGCACTAAGGATGCATCGATGCATAAAATGCATTCGATGTTTGAAAA-ATAGCCT
1 AGTGCATCGATGCA-T-AGGATGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAT-GCC-
816164 G
62 G
* * *
816165 -GTGCATCGATGCATTGCTTG-TGCATCGATGCATCAAATGCATTCGATGTTTGAAAATATTCCG
1 AGTGCATCGATGCATAG---GATGCATCGATGCATAAAATGCATTCGATGTTTGAAAATATGCCG
* * *
816228 AGTGCATCGATGCATGGAGAGTGCATCGGTGCATGAAATGCATTCGATGTT
1 AGTGCATCGATGCATAG-GA-TGCATCGATGCATAAAATGCATTCGATGTT
816279 CAATTAAATC
Statistics
Matches: 99, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 92 0.93
65 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (62 bp):
AGTGCATCGATGCATAGGATGCATCGATGCATAAAATGCATTCGATGTTTGAAAATATGCCG
Found at i:816297 original size:64 final size:61
Alignment explanation
Indices: 816121--816308 Score: 180
Period size: 64 Copynumber: 2.9 Consensus size: 61
816111 GCACTAAGGA
* * * ***
816121 TGCATCGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTGGTGCATCGATGCATTGCTTG
1 TGCATCGATGCATAAAATGCATTCGATG-TTCAAAAAT--CATGGTGCATCGATGCATGGAGAG
* * *
816185 TGCATCGATGCATCAAATGCATTCGATGTTTGAAAATATTC-CGAGTGCATCGATGCATGGAGAG
1 TGCATCGATGCATAAAATGCATTCGATG-TTCAAAA-A-TCATG-GTGCATCGATGCATGGAGAG
* *
816249 TGCATCGGTGCATGAAATGCATTCGATGTTCAATTAAATCATAGGTGCATCGATGCATGG
1 TGCATCGATGCATAAAATGCATTCGATGTTCAA--AAATCAT-GGTGCATCGATGCATGG
816309 TTTGATGCAT
Statistics
Matches: 107, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
63 7 0.07
64 95 0.89
65 4 0.04
66 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (61 bp):
TGCATCGATGCATAAAATGCATTCGATGTTCAAAAATCATGGTGCATCGATGCATGGAGAG
Found at i:816693 original size:31 final size:31
Alignment explanation
Indices: 816655--816734 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
816645 ATTGATTTTG
816655 AAAAACTTACTCCCCCTTACTATAGCACATC
1 AAAAACTTACTCCCCCTTACTATAGCACATC
816686 AAAAACTTACTCCCCCTTACTATAGCACATC
1 AAAAACTTACTCCCCCTTACTATAGCACATC
** * *
816717 TTAAATTTTCTCCCCCTT
1 AAAAACTTACTCCCCCTT
816735 TTTGTTAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.31, C:0.35, G:0.03, T:0.31
Consensus pattern (31 bp):
AAAAACTTACTCCCCCTTACTATAGCACATC
Found at i:824791 original size:64 final size:62
Alignment explanation
Indices: 824722--824900 Score: 193
Period size: 64 Copynumber: 2.8 Consensus size: 62
824712 TGGGACACTT
*
824722 AGTGCATCGGTGCACTAAGGATGCATCGATGCATAAAATGCATTCGATGTTTGAAAA-ATAGCCT
1 AGTGCATCGATGCA-T-AGGATGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAT-GCC-
824786 G
62 G
* * *
824787 -GTGCATCGATGCATTGCTTG-TGCATCGATGCATCAAATGCATTCGATGTTTGAAAATATTCCG
1 AGTGCATCGATGCATAG---GATGCATCGATGCATAAAATGCATTCGATGTTTGAAAATATGCCG
* * *
824850 AGTGCATCGATGCATGGAGAGTGCATCGGTGCATGAAATGCATTCGATGTT
1 AGTGCATCGATGCATAG-GA-TGCATCGATGCATAAAATGCATTCGATGTT
824901 CAATTAAATC
Statistics
Matches: 99, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 92 0.93
65 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (62 bp):
AGTGCATCGATGCATAGGATGCATCGATGCATAAAATGCATTCGATGTTTGAAAATATGCCG
Found at i:824919 original size:64 final size:61
Alignment explanation
Indices: 824743--824930 Score: 180
Period size: 64 Copynumber: 2.9 Consensus size: 61
824733 GCACTAAGGA
* * * ***
824743 TGCATCGATGCATAAAATGCATTCGATGTTTGAAAAATAGCCTGGTGCATCGATGCATTGCTTG
1 TGCATCGATGCATAAAATGCATTCGATG-TTCAAAAAT--CATGGTGCATCGATGCATGGAGAG
* * *
824807 TGCATCGATGCATCAAATGCATTCGATGTTTGAAAATATTC-CGAGTGCATCGATGCATGGAGAG
1 TGCATCGATGCATAAAATGCATTCGATG-TTCAAAA-A-TCATG-GTGCATCGATGCATGGAGAG
* *
824871 TGCATCGGTGCATGAAATGCATTCGATGTTCAATTAAATCATAGGTGCATCGATGCATGG
1 TGCATCGATGCATAAAATGCATTCGATGTTCAA--AAATCAT-GGTGCATCGATGCATGG
824931 TTTGATGCAT
Statistics
Matches: 107, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
63 7 0.07
64 95 0.89
65 4 0.04
66 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (61 bp):
TGCATCGATGCATAAAATGCATTCGATGTTCAAAAATCATGGTGCATCGATGCATGGAGAG
Found at i:825561 original size:32 final size:33
Alignment explanation
Indices: 825482--825566 Score: 88
Period size: 32 Copynumber: 2.6 Consensus size: 33
825472 ATTGATTATT
* *
825482 TTTCGGTTCGGATCAATATC-GAATCGGTTGCTT
1 TTTCGGTTCGGGTCAATATCAGAATCGGTTGC-A
* *
825515 TTTAGG-TCGAGTCAATATCAG-ATCGGTTAG-A
1 TTTCGGTTCGGGTCAATATCAGAATCGGTT-GCA
825546 TTTCGGTTCGGGTCAATATCA
1 TTTCGGTTCGGGTCAATATCA
825567 AGTCCAGTCA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
31 5 0.12
32 31 0.72
33 7 0.16
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.36
Consensus pattern (33 bp):
TTTCGGTTCGGGTCAATATCAGAATCGGTTGCA
Found at i:826939 original size:21 final size:21
Alignment explanation
Indices: 826915--826993 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
826905 TGTATATACT
826915 TAATTTATTATTTTATTAAAA
1 TAATTTATTATTTTATTAAAA
* *
826936 TAATTTATATACTTAATTTGAAAA
1 TAATTTAT-TATTTTA-TT-AAAA
**
826960 -AAAATATT-TTTTA--AAAA
1 TAATTTATTATTTTATTAAAA
*
826977 TTATTTATTATTTTATT
1 TAATTTATTATTTTATT
826994 TTATAAATTA
Statistics
Matches: 42, Mismatches: 9, Indels: 14
0.65 0.14 0.22
Matches are distributed among these distances:
17 4 0.10
18 5 0.12
19 5 0.12
21 11 0.26
22 6 0.14
23 7 0.17
24 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (21 bp):
TAATTTATTATTTTATTAAAA
Found at i:838445 original size:40 final size:39
Alignment explanation
Indices: 838392--838483 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 39
838382 ACTTTCGCGT
* *
838392 CGTTTTTAGATAAACGCCACAATAGTAT-TAATCAATAGTGG
1 CGTTTTT-TATAAACGCCACAAAAGTATGTAAT--ATAGTGG
* *
838433 CGTTTTTTATAAACGCCGCAAAAGTATGTGATATAGTGG
1 CGTTTTTTATAAACGCCACAAAAGTATGTAATATAGTGG
*
838472 CATTTTTT-TAAA
1 CGTTTTTTATAAA
838484 AATGTCGCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
38 4 0.09
39 14 0.31
40 17 0.38
41 10 0.22
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (39 bp):
CGTTTTTTATAAACGCCACAAAAGTATGTAATATAGTGG
Found at i:839147 original size:148 final size:148
Alignment explanation
Indices: 838958--839229 Score: 411
Period size: 148 Copynumber: 1.8 Consensus size: 148
838948 AACATATAGA
* * * * * * * * * *
838958 GGCGTTTTGGTATCAAACGCACCAAATGATTTGGACTTTAGTGGCGTTTTGATAGAAAATGCCGT
1 GGCGTTTTGATAACAAACGCACCAAATGATTCGGACATTAGTGGCGTTTAGACAAAAAACGCAGC
839023 AAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAACACCATA
66 AAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAACACCATA
839088 ATAGATTAGTACTTTTGC
131 ATAGATTAGTACTTTTGC
*
839106 GGCGTTTTGATAACAAACGC-CGCAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAACGCAG
1 GGCGTTTTGATAACAAACGCAC-CAAATGATTCGGACATTAGTGGCGTTTAGACAAAAAACGCAG
**
839170 CAAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGTTGTTTTTTAATAAAC
65 CAAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAAC
839230 GTCGTAATAA
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
147 1 0.01
148 109 0.99
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.36
Consensus pattern (148 bp):
GGCGTTTTGATAACAAACGCACCAAATGATTCGGACATTAGTGGCGTTTAGACAAAAAACGCAGC
AAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAACACCATA
ATAGATTAGTACTTTTGC
Found at i:839221 original size:189 final size:188
Alignment explanation
Indices: 839104--839552 Score: 479
Period size: 189 Copynumber: 2.4 Consensus size: 188
839094 TAGTACTTTT
*
839104 GCGGCGTTTTGATAACAAACGCCGCAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAACGCA
1 GCGGCATTTTGATAACAAACGCCGCAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAACGCA
* *
839169 GCAAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGTTGTTTTTTAATAAACGTCG
66 GCAAATGTATTTTATTTAAACGTCATTAACTTTAGACATATAGCGGTGTTTTTTAATAAACGTCG
* * * * *** *
839234 TAATAAATTAGTGCTTTAGTGGTGTTTTGACAAAAATGTCATAATAGGGTTCACATAAA
131 -AATAAATTAGTACTATAGCGGCGTTTTGACAAAAACACCATAATAGGATTCACATAAA
* * * *
839293 GCGGCATTTTGGTAACAAACGCCGTAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAATGCT
1 GCGGCATTTTGATAACAAACGCCGCAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAACGCA
* *
839358 GCAAATGTATTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCG-TTTTT--T-ACCG-C-
66 GCAAATGTATTTTATTTAAACGTCATTAACTTTAGACATATAGCGGTGTTTTTTAATAAACGTCG
* * * ** ** *
839417 AATAAATTAGTACTTTAGCAGCGTTTTGATAAAAATGCCGCAATAGG-TTGCACATATA
131 AATAAATTAGTACTATAGCGGCGTTTTGACAAAAACACCATAATAGGATT-CACATAAA
* * * * * * *
839475 GCGGCGTTGT-AGTAACAAACGCCGTAAATTA-ACGATATATTTA-TGGCGTTTTGACAAAAAAC
1 GCGGCATTTTGA-TAACAAACGCCGCAAATGATTCG-TACA-TTAGTGGCGTTTAGACAAAAAAC
*
839537 GCCGCAAATGT-TTTTA
63 GCAGCAAATGTATTTTA
839553 ACATTAGTTG
Statistics
Matches: 229, Mismatches: 27, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
181 9 0.04
182 102 0.45
183 3 0.01
184 1 0.00
185 3 0.01
186 1 0.00
188 5 0.02
189 105 0.46
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (188 bp):
GCGGCATTTTGATAACAAACGCCGCAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAACGCA
GCAAATGTATTTTATTTAAACGTCATTAACTTTAGACATATAGCGGTGTTTTTTAATAAACGTCG
AATAAATTAGTACTATAGCGGCGTTTTGACAAAAACACCATAATAGGATTCACATAAA
Found at i:839261 original size:148 final size:148
Alignment explanation
Indices: 838958--839263 Score: 407
Period size: 148 Copynumber: 2.1 Consensus size: 148
838948 AACATATAGA
* * * * * * * * * *
838958 GGCGTTTTGGTATCAAACGCACCAAATGATTTGGACTTTAGTGGCGTTTTGATAGAAAATGCCGT
1 GGCGTTTTGATAACAAACGCACCAAATGATTCGGACATTAGTGGCGTTTAGACAAAAAACGCAGC
839023 AAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAACACCATA
66 AAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAACACCATA
* *
839088 ATAGATTAGTACTTTTGC
131 ATAAATTAGTACTTTAGC
*
839106 GGCGTTTTGATAACAAACGC-CGCAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAACGCAG
1 GGCGTTTTGATAACAAACGCAC-CAAATGATTCGGACATTAGTGGCGTTTAGACAAAAAACGCAG
** ** *
839170 CAAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGTTGTTTTTTAATAAACGTCGT
65 CAAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAACACCAT
* *
839235 AATAAATTAGTGCTTTAGT
130 AATAAATTAGTACTTTAGC
*
839254 GGTGTTTTGA
1 GGCGTTTTGA
839264 CAAAAATGTC
Statistics
Matches: 136, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
147 1 0.01
148 135 0.99
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (148 bp):
GGCGTTTTGATAACAAACGCACCAAATGATTCGGACATTAGTGGCGTTTAGACAAAAAACGCAGC
AAATGTTTTTTATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTAATAAACACCATA
ATAAATTAGTACTTTAGC
Found at i:839546 original size:182 final size:185
Alignment explanation
Indices: 839116--839552 Score: 537
Period size: 182 Copynumber: 2.4 Consensus size: 185
839106 GGCGTTTTGA
* *
839116 TAACAAACGCCGCAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAACGCAGCAAATGTTTTT
1 TAACAAACGCCGTAAATGATACGTACATTAGTGGCGTTTAGACAAAAAACGCAGCAAATG-TTTT
** *
839181 TATTTAAACGTCATTAACTTTAGACATATAGCGTTGTTTTTTAATAAACGTCGTAATAAATTAGT
65 TATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTT-AT-AACG-CGCAATAAATTAGT
* ** * * * * *
839246 GCTTTAGTGGTGTTTTGACAAAAATGTCATAATAGGGTTCACATAAAGCGGCATTTTGG
127 ACTTTAGCAGCGTTTTGACAAAAATGCCACAATAGGGTTCACATAAAGCGGCATTGTAG
* * *
839305 TAACAAACGCCGTAAATGATTCGTACATTAGTGGCGTTTAGACAAAAAATGCTGCAAATGTATTT
1 TAACAAACGCCGTAAATGATACGTACATTAGTGGCGTTTAGACAAAAAACGCAGCAAATGT-TTT
839370 TATTTAAACGTCATTAACTTTAGACATATAGCGGCG-TTTTT-T-AC-CGCAATAAATTAGTACT
65 TATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTATAACGCGCAATAAATTAGTACT
* * * *
839431 TTAGCAGCGTTTTGATAAAAATGCCGCAATA-GGTTGCACATATAGCGGCGTTGTAG
130 TTAGCAGCGTTTTGACAAAAATGCCACAATAGGGTT-CACATAAAGCGGCATTGTAG
* * * *
839487 TAACAAACGCCGTAAATTA-ACGATATATTTA-TGGCGTTTTGACAAAAAACGCCGCAAATGTTT
1 TAACAAACGCCGTAAATGATACG-TACA-TTAGTGGCGTTTAGACAAAAAACGCAGCAAATGTTT
839550 TTA
64 TTA
839553 ACATTAGTTG
Statistics
Matches: 220, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
181 11 0.05
182 103 0.47
183 3 0.01
184 2 0.01
186 1 0.00
188 6 0.03
189 94 0.43
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (185 bp):
TAACAAACGCCGTAAATGATACGTACATTAGTGGCGTTTAGACAAAAAACGCAGCAAATGTTTTT
ATTTAAACGTCATTAACTTTAGACATATAGCGGCGTTTTTTATAACGCGCAATAAATTAGTACTT
TAGCAGCGTTTTGACAAAAATGCCACAATAGGGTTCACATAAAGCGGCATTGTAG
Found at i:846748 original size:22 final size:22
Alignment explanation
Indices: 846705--846748 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
846695 ATTTTAAATT
846705 TACCTGACTTTATTTATATTTA
1 TACCTGACTTTATTTATATTTA
846727 TACCATGACATTT-TTTAT-TTTA
1 TACC-TGAC-TTTATTTATATTTA
846749 ATTAATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.40
23 9 0.45
24 3 0.15
ACGTcount: A:0.27, C:0.14, G:0.05, T:0.55
Consensus pattern (22 bp):
TACCTGACTTTATTTATATTTA
Found at i:847087 original size:21 final size:21
Alignment explanation
Indices: 847063--847112 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
847053 TGAAGCAAGT
* *
847063 GAAGCAGATAGAGCATCAGCA
1 GAAGCAGACAGAGCAGCAGCA
* * *
847084 GAAGAAGCCAGAGCAGCAGCG
1 GAAGCAGACAGAGCAGCAGCA
847105 GAAGCAGA
1 GAAGCAGA
847113 GAAAGAAGTT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.20, G:0.34, T:0.04
Consensus pattern (21 bp):
GAAGCAGACAGAGCAGCAGCA
Found at i:847548 original size:43 final size:41
Alignment explanation
Indices: 847501--847682 Score: 120
Period size: 43 Copynumber: 4.2 Consensus size: 41
847491 AGACCTTTAC
* *
847501 CGGCGTTTTTAGCAAAAACGTCGCAAAACATCAACACTTACTG
1 CGGCGTTTTTAGCAAAAACG-CGCAAAA-ATCAACACCTATTG
*
847544 CGGCGTTTGTGAG-AAAAACGCCGCTAAAAATCATA-ACCTATTG
1 CGGCGTTT-TTAGCAAAAACG-CGC-AAAAATCA-ACACCTATTG
* * *
847587 CAGCGTTTTTATGACAAACAC-CGCTAAATATCAACACCTATTG
1 CGGCGTTTTTA-G-CAAAAACGCGC-AAAAATCAACACCTATTG
* * * * *
847630 CGGCGTTTGTCA-CACAAATGCCGCTAAATATCAATACCTATTG
1 CGGCGTTT-TTAGCAAAAACG-CGC-AAAAATCAACACCTATTG
*
847673 CGACGTTTTT
1 CGGCGTTTTT
847683 TGTTAAAAAA
Statistics
Matches: 113, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
41 4 0.04
42 4 0.04
43 90 0.80
44 10 0.09
45 5 0.04
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (41 bp):
CGGCGTTTTTAGCAAAAACGCGCAAAAATCAACACCTATTG
Found at i:850787 original size:66 final size:73
Alignment explanation
Indices: 850715--850852 Score: 209
Period size: 74 Copynumber: 2.0 Consensus size: 73
850705 AAATTAACTG
*
850715 AATTTTTTCATTAGATTAA-TTG-A-AT-ATA-A-T-TTTTTTTATTTGAGTTAAAATTTAACTA
1 AATTTTTTAATTAGATTAATTTGAATATAATATAGTATTTTTTTATTTGAGTTAAAATTTAACTA
850773 GATATTTT
66 GATATTTT
850781 AATTTTTTAATTAGATTAATTTGAATATAATATATGTATTTTTTTATTTGAGTTAAAATTTAACT
1 AATTTTTTAATTAGATTAATTTGAATATAATATA-GTATTTTTTTATTTGAGTTAAAATTTAACT
850846 AGATATT
65 AGATATT
850853 GATAATTTAA
Statistics
Matches: 63, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
66 18 0.29
67 3 0.05
68 1 0.02
69 2 0.03
70 3 0.05
71 1 0.02
73 1 0.02
74 34 0.54
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.54
Consensus pattern (73 bp):
AATTTTTTAATTAGATTAATTTGAATATAATATAGTATTTTTTTATTTGAGTTAAAATTTAACTA
GATATTTT
Found at i:851060 original size:29 final size:30
Alignment explanation
Indices: 850991--851060 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
850981 TTTAAACCGA
850991 ATTAACCGTTAACCGAATATTAAAAAAAAT
1 ATTAACCGTTAACCGAATATTAAAAAAAAT
* *
851021 ATTAACCGTTAACCGAATATT-GAACAAAT
1 ATTAACCGTTAACCGAATATTAAAAAAAAT
*
851050 ATTAACTGTTA
1 ATTAACCGTTA
851061 CCCGGCTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
29 16 0.43
30 21 0.57
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (30 bp):
ATTAACCGTTAACCGAATATTAAAAAAAAT
Found at i:867269 original size:35 final size:35
Alignment explanation
Indices: 867223--867298 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
867213 AAAACAGTCC
* *
867223 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
***
867258 TCAATTTCATTCTAAACTTTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
867293 TCAATT
1 TCAATT
867299 ATGTCAGATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.21, G:0.01, T:0.38
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:867838 original size:130 final size:130
Alignment explanation
Indices: 867685--867932 Score: 415
Period size: 130 Copynumber: 1.9 Consensus size: 130
867675 TATTTATATA
* **
867685 ATCAATTTAGTCCTAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATTTAGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* *
867750 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
*
867815 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
1 ATCAATTTAGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
* * *
867880 TTAACACATGATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
867933 GAAGAAAATT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 109 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (130 bp):
ATCAATTTAGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTG
TTAACACATGATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:867963 original size:130 final size:129
Alignment explanation
Indices: 867699--867963 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
867689 ATTTAGTCCT
* ** *
867699 AAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
* *** * * **** *
867764 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 TGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
867829 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
* * * *
867894 TGATATATGTTATTGGTGACACATGTCACCACCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
66 TGACACATGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
867958 -A
128 CA
867959 AAATT
1 AAATT
867964 TGGGTCTTGG
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
130 100 0.88
132 8 0.07
133 5 0.04
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTGTTAACACATGATCA
TGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:868292 original size:28 final size:27
Alignment explanation
Indices: 868261--868323 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
868251 AGTTGATACA
*
868261 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
868289 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
868317 ATATTTT
1 ATATTTT
868324 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:868424 original size:16 final size:18
Alignment explanation
Indices: 868403--868436 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
868393 ATTTCTTATT
868403 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
868419 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
868437 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:872190 original size:16 final size:16
Alignment explanation
Indices: 872166--872196 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
872156 TTCTAATTTT
*
872166 TTTTTGAGTTCAAGCC
1 TTTTCGAGTTCAAGCC
872182 TTTTCGAGTTCAAGC
1 TTTTCGAGTTCAAGC
872197 TTCAATATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (16 bp):
TTTTCGAGTTCAAGCC
Found at i:872692 original size:2 final size:2
Alignment explanation
Indices: 872687--872712 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
872677 TCTATGTTCG
872687 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
872713 TGATGGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:874145 original size:14 final size:15
Alignment explanation
Indices: 874076--874145 Score: 51
Period size: 14 Copynumber: 4.9 Consensus size: 15
874066 TTAAATAATT
*
874076 TATTAATTATTAAT-
1 TATTAATTATAAATA
* *
874090 T-TT-ATGATAATTA
1 TATTAATTATAAATA
*
874103 TATTTAATTATAACTA
1 TA-TTAATTATAAATA
*
874119 TATCAA-TATAAATA
1 TATTAATTATAAATA
874133 TATTAATTA-AAAT
1 TATTAATTATAAAT
874146 TAAGTTATTA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
12 6 0.14
13 3 0.07
14 17 0.40
15 7 0.16
16 10 0.23
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (15 bp):
TATTAATTATAAATA
Found at i:882012 original size:69 final size:70
Alignment explanation
Indices: 881869--882117 Score: 351
Period size: 69 Copynumber: 3.5 Consensus size: 70
881859 CAAAAGTATT
* * * * * * *
881869 GATACTTTCGAATTTAAAGAAAAACACGAAAAATGAAAAGGCTACAAAGTATCGATAC-TTTTCA
1 GATACTTTCGAATTTAAA-AAAAATA-G-AAAATGAGAATGATGCAAAGTATCAATACTTTTTGA
*
881933 TAAATATC
63 CAAATATC
*
881941 GATACTTTCGAA-TTAAAAAAAATAGAAAATGAGAATGATGCAAAATATCAATACTTTTTGACAA
1 GATACTTTCGAATTTAAAAAAAATAGAAAATGAGAATGATGCAAAGTATCAATACTTTTTGACAA
882005 ATATC
66 ATATC
882010 GATACTTTCGAA-TTAAAAAAAATAGAAAATGAGAATGATGCAAAGTATCAATACTTTTTGACAA
1 GATACTTTCGAATTTAAAAAAAATAGAAAATGAGAATGATGCAAAGTATCAATACTTTTTGACAA
882074 ATATC
66 ATATC
882079 GATACTTTCGAATTTAAAAAAAACATAGAAAATGAGAAT
1 GATACTTTCGAATTT-AAAAAAA-ATAGAAAATGAGAAT
882118 ATTGATAACA
Statistics
Matches: 163, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
68 23 0.14
69 93 0.57
70 8 0.05
71 12 0.07
72 27 0.17
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.28
Consensus pattern (70 bp):
GATACTTTCGAATTTAAAAAAAATAGAAAATGAGAATGATGCAAAGTATCAATACTTTTTGACAA
ATATC
Found at i:888975 original size:22 final size:21
Alignment explanation
Indices: 888931--889027 Score: 82
Period size: 19 Copynumber: 4.9 Consensus size: 21
888921 TTGGTTTACA
* *
888931 AAAAAACCGGTTTTTTTA-A-
1 AAAAATCCGGATTTTTTAGAT
*
888950 AAAAATCTGGATTTTTTCAGAT
1 AAAAATCCGGATTTTTT-AGAT
888972 AAAAATCCGG-TTTTTT---T
1 AAAAATCCGGATTTTTTAGAT
*
888989 AAAAAACCGGATTTTTTTAGAT
1 AAAAATCCGGA-TTTTTTAGAT
*
889011 AAAAAACC-GATTTTTTA
1 AAAAATCCGGATTTTTTA
889028 TCCGGTTTGA
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
17 10 0.15
19 20 0.31
20 8 0.12
21 9 0.14
22 18 0.28
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.39
Consensus pattern (21 bp):
AAAAATCCGGATTTTTTAGAT
Found at i:889001 original size:39 final size:41
Alignment explanation
Indices: 888931--889026 Score: 142
Period size: 39 Copynumber: 2.4 Consensus size: 41
888921 TTGGTTTACA
*
888931 AAAAAACCGGTTTTTTTAAAAAAATCTGGATTTTTTCAGAT
1 AAAAAACCGGTTTTTTTAAAAAAATCCGGATTTTTTCAGAT
* *
888972 AAAAATCCGGTTTTTTT-AAAAAA-CCGGATTTTTTTAGAT
1 AAAAAACCGGTTTTTTTAAAAAAATCCGGATTTTTTCAGAT
*
889011 AAAAAACCGATTTTTT
1 AAAAAACCGGTTTTTT
889027 ATCCGGTTTG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
39 28 0.56
40 6 0.12
41 16 0.32
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (41 bp):
AAAAAACCGGTTTTTTTAAAAAAATCCGGATTTTTTCAGAT
Found at i:889070 original size:24 final size:26
Alignment explanation
Indices: 889011--889073 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 26
889001 TTTTTTAGAT
* *
889011 AAAAAACCGATTTTTTATCCGGTTTGAA
1 AAAAAACCGGTTTTTAATCCGG-TT-AA
889039 AAAAAACCGGTTTTTAATCCGG-T-A
1 AAAAAACCGGTTTTTAATCCGGTTAA
889063 AAAAAACCGGT
1 AAAAAACCGGT
889074 CGTTCAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 12 0.36
26 1 0.03
28 20 0.61
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (26 bp):
AAAAAACCGGTTTTTAATCCGGTTAA
Found at i:889312 original size:18 final size:18
Alignment explanation
Indices: 889269--889312 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
889259 GGTTATAGAG
*
889269 ATAAATA-TATATATAAT
1 ATAAATATTATAAATAAT
*
889286 ATAACTATTATAAATAAT
1 ATAAATATTATAAATAAT
*
889304 CTAAATATT
1 ATAAATATT
889313 TATGGATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAAATATTATAAATAAT
Found at i:891711 original size:17 final size:17
Alignment explanation
Indices: 891689--891729 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
891679 ATGGTCGAAT
*
891689 GTTGACTGTTAACCGGC
1 GTTGACCGTTAACCGGC
*
891706 GTTGACCGTTGACCGGC
1 GTTGACCGTTAACCGGC
891723 GTTGACC
1 GTTGACC
891730 ACAGTTGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.27, G:0.32, T:0.27
Consensus pattern (17 bp):
GTTGACCGTTAACCGGC
Found at i:894174 original size:24 final size:24
Alignment explanation
Indices: 894147--894261 Score: 151
Period size: 24 Copynumber: 4.8 Consensus size: 24
894137 TTGATTTGAT
*
894147 TTCTTATCTGATACTTGACATGGA
1 TTCTGATCTGATACTTGACATGGA
894171 TTCTGATCTGATA-TCTGACATGGA
1 TTCTGATCTGATACT-TGACATGGA
*
894195 TTCTGATCTGATACTTGACTTGGA
1 TTCTGATCTGATACTTGACATGGA
* * *
894219 TTCTGATATGATACTTGACCTAGA
1 TTCTGATCTGATACTTGACATGGA
* *
894243 TTTTGATATGATACTTGAC
1 TTCTGATCTGATACTTGAC
894262 GTGAATTATG
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
23 1 0.01
24 81 0.98
25 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (24 bp):
TTCTGATCTGATACTTGACATGGA
Found at i:905893 original size:113 final size:113
Alignment explanation
Indices: 905695--905920 Score: 452
Period size: 113 Copynumber: 2.0 Consensus size: 113
905685 TCAAGGAGAT
905695 GATGCAATAGGAAGACAAGGTAAATGATGAAATCTGAAGGAAGCAACACAAAGGACCCTCAATGG
1 GATGCAATAGGAAGACAAGGTAAATGATGAAATCTGAAGGAAGCAACACAAAGGACCCTCAATGG
905760 AAGGTCCAGTGTAAGCAGAGCCAAACGTTACTAATGTTACAACCACAA
66 AAGGTCCAGTGTAAGCAGAGCCAAACGTTACTAATGTTACAACCACAA
905808 GATGCAATAGGAAGACAAGGTAAATGATGAAATCTGAAGGAAGCAACACAAAGGACCCTCAATGG
1 GATGCAATAGGAAGACAAGGTAAATGATGAAATCTGAAGGAAGCAACACAAAGGACCCTCAATGG
905873 AAGGTCCAGTGTAAGCAGAGCCAAACGTTACTAATGTTACAACCACAA
66 AAGGTCCAGTGTAAGCAGAGCCAAACGTTACTAATGTTACAACCACAA
905921 TGGAAATCAA
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (113 bp):
GATGCAATAGGAAGACAAGGTAAATGATGAAATCTGAAGGAAGCAACACAAAGGACCCTCAATGG
AAGGTCCAGTGTAAGCAGAGCCAAACGTTACTAATGTTACAACCACAA
Found at i:906687 original size:31 final size:31
Alignment explanation
Indices: 906610--906675 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
906600 CAGTTATGTC
*
906610 AGGGACCATATTGCAAAGAGACTAAATGTTG
1 AGGGGCCATATTGCAAAGAGACTAAATGTTG
906641 AGGGGCCATATTGCAAACG-GACTAAATGTTG
1 AGGGGCCATATTGCAAA-GAGACTAAATGTTG
906672 -GGGG
1 AGGGG
906676 ATTGTATTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 4 0.12
31 28 0.85
32 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (31 bp):
AGGGGCCATATTGCAAAGAGACTAAATGTTG
Found at i:912285 original size:7 final size:7
Alignment explanation
Indices: 912275--912324 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
912265 GAAAAAAATG
912275 AATAATA
1 AATAATA
912282 AATAATA
1 AATAATA
912289 AATAATAA
1 AATAAT-A
*
912297 AACATATA
1 AATA-ATA
*
912305 AATAAAA
1 AATAATA
*
912312 AATAAAA
1 AATAATA
912319 AATAAT
1 AATAAT
912325 GTATTATCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 27 0.73
8 8 0.22
9 2 0.05
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (7 bp):
AATAATA
Found at i:912932 original size:33 final size:33
Alignment explanation
Indices: 912859--912934 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
912849 GTCCTACTTG
* *
912859 GACTCAAATGCTTCGGTTTTAGTGTTTTAATAT
1 GACTCAAATACTTCGGTTTTAGTGTTTCAATAT
*
912892 GATTCAAATACGTT-GGTTTTAGTGTTTCAATA-
1 GACTCAAATAC-TTCGGTTTTAGTGTTTCAATAT
912924 GAACTCAAATA
1 G-ACTCAAATA
912935 TGTTAATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 1 0.03
33 34 0.92
34 2 0.05
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (33 bp):
GACTCAAATACTTCGGTTTTAGTGTTTCAATAT
Found at i:913021 original size:22 final size:22
Alignment explanation
Indices: 912993--913041 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
912983 GGCCTGCAAA
912993 AATAATAAA-A-AATATTAATAAT
1 AATAATAAATATAATA-TAAT-AT
913015 AATAATAAATATAATATAATAT
1 AATAATAAATATAATATAATAT
913037 AATAA
1 AATAA
913042 AATGTTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 16 0.64
23 5 0.20
24 4 0.16
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAATAAATATAATATAATAT
Found at i:913038 original size:19 final size:18
Alignment explanation
Indices: 912992--913042 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
912982 AGGCCTGCAA
912992 AAATAATA-AA-AAATAT
1 AAATAATATAATAAATAT
*
913008 TAATAATAATAATAAATAT
1 AAATAAT-ATAATAAATAT
913027 AATATAATATAATAAA
1 AA-ATAATATAATAAA
913043 ATGTTTTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 6 0.21
17 1 0.03
18 2 0.07
19 15 0.52
20 5 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATAATATAATAAATAT
Found at i:914351 original size:18 final size:18
Alignment explanation
Indices: 914314--914351 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
914304 TTATGTCAAG
*
914314 ATTATATGATTAAATTTT
1 ATTATATGATTAAATCTT
914332 ATTATATTGATTAAA-CTT
1 ATTATA-TGATTAAATCTT
914350 AT
1 AT
914352 AAGTTACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (18 bp):
ATTATATGATTAAATCTT
Found at i:921345 original size:37 final size:37
Alignment explanation
Indices: 921269--921345 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
921259 TTTTTATATT
*
921269 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
921306 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
921343 TTT
1 TTT
921346 GTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Done.