genome.fa.s8363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008363.1 Hibiscus syriacus cultivar Beakdansim tig00111102_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118867

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3863--3952	23	4.0	23	83	1	110	28	23	27	20	1.99
3863--3951	46	2.0	45	86	2	124	29	22	28	20	1.98
4340--4372	2	16.5	2	100	0	66	48	0	0	51	1.00
5483--5560	20	3.8	20	75	18	70	24	25	19	30	1.98
9919--9972	27	2.0	27	92	0	90	14	3	37	44	1.63
12909--13202	153	1.9	154	92	0	500	43	12	7	36	1.72
15871--15946	36	2.1	36	97	0	143	43	14	10	31	1.79
20419--20448	15	2.0	15	100	0	60	13	46	26	13	1.80
20871--20946	36	2.1	36	97	0	143	43	14	10	31	1.79
22077--22132	26	2.1	26	83	9	69	30	12	8	48	1.72
22121--22180	29	2.1	29	90	0	93	35	8	13	43	1.74
22265--22343	28	2.8	28	92	0	122	37	10	10	41	1.73
22605--22656	21	2.5	21	93	0	95	30	11	25	32	1.91
23046--23159	44	2.6	45	88	1	176	54	0	7	36	1.36
23046--23159	45	2.6	43	87	4	165	54	0	7	36	1.36
23641--23720	29	2.6	31	78	9	85	47	3	6	42	1.46
30602--30641	19	2.1	19	100	0	80	42	17	0	40	1.49
32483--32514	9	3.6	9	95	0	55	78	0	0	21	0.76
32482--32514	10	3.4	10	87	8	50	78	0	0	21	0.75
36530--36573	21	2.2	20	84	12	54	27	13	6	52	1.66
40669--40732	22	3.0	21	86	6	83	25	25	25	25	2.00
41277--41332	21	2.6	21	94	2	94	26	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41405--41445	19	2.2	19	86	8	57	29	12	12	46	1.77
44653--44690	19	2.0	19	94	0	67	44	10	7	36	1.68
44654--44701	19	2.5	19	80	12	62	43	14	8	33	1.75
45793--45885	48	1.9	48	93	0	159	21	27	11	38	1.89
50382--50434	15	3.5	15	87	10	81	28	24	9	37	1.86
56209--56385	92	1.9	93	86	3	250	43	13	20	22	1.87
62346--62434	46	1.9	46	100	0	178	29	8	23	38	1.85
64771--64837	33	2.0	33	100	0	134	29	14	2	52	1.57
65245--65269	2	12.5	2	100	0	50	48	0	0	52	1.00
65210--65257	22	2.2	22	82	14	55	37	4	6	52	1.46
67741--67822	29	2.8	29	100	0	164	42	28	10	18	1.84
67830--67925	20	5.0	19	88	8	101	19	20	42	16	1.89
67822--67865	7	6.4	7	80	15	56	22	27	36	13	1.92
67857--67885	12	2.3	13	94	5	51	13	24	44	17	1.85
67843--67913	18	3.9	17	89	9	88	16	21	45	16	1.86
67928--67979	9	5.3	10	84	11	72	36	30	19	13	1.90
75097--75178	29	2.8	29	100	0	164	42	28	10	18	1.84
75186--75281	20	5.0	19	88	8	101	19	20	42	16	1.89
75178--75221	7	6.4	7	80	15	56	22	27	36	13	1.92
75213--75241	12	2.3	13	94	5	51	13	24	44	17	1.85
75199--75269	18	3.9	17	89	9	88	16	21	45	16	1.86
75284--75331	9	5.1	9	85	9	69	35	29	20	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75284--75334	20	2.7	19	88	8	77	35	31	19	13	1.91
85307--85341	17	2.0	17	88	5	52	20	5	37	37	1.76
86778--86849	35	2.0	36	86	5	101	4	13	20	61	1.49
89658--89718	31	1.9	32	86	3	88	29	1	9	59	1.39
90429--90488	21	2.9	21	82	0	66	21	0	23	55	1.44
97959--98039	29	2.8	29	92	0	135	22	11	23	43	1.85
98017--98084	29	2.3	29	84	0	82	30	7	20	41	1.80
101175--101206	16	2.0	16	100	0	64	43	6	12	37	1.68
110260--110628	20	18.5	20	86	4	476	34	26	18	19	1.95
111300--111346	24	2.0	24	87	8	69	25	14	21	38	1.92
111521--111545	12	2.1	12	100	0	50	72	0	28	0	0.86
113839--114142	19	17.4	19	77	18	331	46	18	20	14	1.83
113867--114142	52	5.2	53	88	7	331	46	17	21	14	1.83
113833--114164	33	9.6	36	78	15	262	46	18	20	14	1.84
113867--114091	102	2.1	108	87	8	329	46	17	20	15	1.84
113839--114174	140	2.4	137	87	9	470	46	18	20	14	1.84
113906--114164	51	4.9	52	80	15	245	46	17	20	15	1.84
114171--114272	19	5.6	19	85	12	151	14	23	17	44	1.86
114379--114415	14	2.6	14	91	0	65	45	21	0	32	1.52
114396--114465	37	1.9	36	94	2	122	51	17	1	30	1.54
114396--114474	37	2.2	37	88	2	115	53	17	1	27	1.52
116331--116387	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116312--116403	33	2.8	33	93	1	159	46	21	20	10	1.81
116275--116408	19	7.6	19	77	16	119	45	23	19	11	1.82
116404--116532	19	7.3	19	75	17	125	8	17	28	45	1.77
116404--116495	33	2.8	33	93	3	150	7	18	28	45	1.76
116576--116953	186	2.0	183	97	2	713	46	19	12	21	1.83
116576--116953	92	4.1	93	97	2	719	46	19	12	21	1.83
118646--118670	13	1.9	13	100	0	50	32	32	28	8	1.86
118638--118750	32	3.5	32	86	4	165	43	22	23	10	1.84
118659--118755	19	5.7	19	68	24	72	42	22	23	11	1.86
118638--118750	33	3.5	33	89	2	167	43	22	23	10	1.84
118775--118858	19	4.7	18	74	16	77	11	26	20	41	1.86

Tables:   1

The End!