Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5892847
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 22 of 27
Found at i:5036748 original size:21 final size:21
Alignment explanation
Indices: 5036723--5036847 Score: 146
Period size: 21 Copynumber: 6.0 Consensus size: 21
5036713 ATTCTAACTA
* *
5036723 TCGCGTTGCGATTTCCCAAAT
1 TCGCGTTGCGATTTTCCTAAT
5036744 TCGCGTTGCGATTTTCCTAAT
1 TCGCGTTGCGATTTTCCTAAT
* * *
5036765 TCGCATTGCGATTTACGTAA-
1 TCGCGTTGCGATTTTCCTAAT
5036785 TCGCGTTGCGATTTTCCTAAT
1 TCGCGTTGCGATTTTCCTAAT
* * *
5036806 TCGCATTGCGATTTACGTAA-
1 TCGCGTTGCGATTTTCCTAAT
* *
5036826 TCACGTTGCGATTTTCATAAT
1 TCGCGTTGCGATTTTCCTAAT
5036847 T
1 T
5036848 TGCAATGCGA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
20 33 0.38
21 54 0.62
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.39
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCTAAT
Found at i:5036789 original size:41 final size:41
Alignment explanation
Indices: 5036744--5036870 Score: 193
Period size: 41 Copynumber: 3.1 Consensus size: 41
5036734 TTTCCCAAAT
5036744 TCGCGTTGCGATTTTCCTAATTCGCATTGCGATTTACGTAA
1 TCGCGTTGCGATTTTCCTAATTCGCATTGCGATTTACGTAA
5036785 TCGCGTTGCGATTTTCCTAATTCGCATTGCGATTTACGTAA
1 TCGCGTTGCGATTTTCCTAATTCGCATTGCGATTTACGTAA
* * * * *
5036826 TCACGTTGCGATTTTCATAATTTGCAATGCGA-ATACGTAAA
1 TCGCGTTGCGATTTTCCTAATTCGCATTGCGATTTACGT-AA
5036867 TCGC
1 TCGC
5036871 AACGCGATTA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 5 0.06
41 74 0.94
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (41 bp):
TCGCGTTGCGATTTTCCTAATTCGCATTGCGATTTACGTAA
Found at i:5036857 original size:62 final size:62
Alignment explanation
Indices: 5036729--5036857 Score: 134
Period size: 62 Copynumber: 2.1 Consensus size: 62
5036719 ACTATCGCGT
* * * * **
5036729 TGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAATTCGCATTGCGATTTACGTAATCGCGT
1 TGCGATTTCCCAAATTCGCATTGCGATTTACCTAATTCACATTGCGATTTACATAATCGCAA
* * * * * *
5036791 TGCGATTTTCCTAATTCGCATTGCGATTTACGTAA-TCACGTTGCGATTTTCATAATTTGCAA
1 TGCGATTTCCCAAATTCGCATTGCGATTTACCTAATTCACATTGCGATTTACATAA-TCGCAA
5036853 TGCGA
1 TGCGA
5036858 ATACGTAAAT
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
61 16 0.30
62 38 0.70
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (62 bp):
TGCGATTTCCCAAATTCGCATTGCGATTTACCTAATTCACATTGCGATTTACATAATCGCAA
Found at i:5036877 original size:20 final size:20
Alignment explanation
Indices: 5036849--5036940 Score: 114
Period size: 20 Copynumber: 4.5 Consensus size: 20
5036839 TTCATAATTT
*
5036849 GCAATGCGAATACGTAAATC
1 GCAATGCGAATACATAAATC
* *
5036869 GCAACGCGATTACATAAATC
1 GCAATGCGAATACATAAATC
*
5036889 GCAATGCGAATTAGGA-AAATC
1 GCAATGCGAA-TA-CATAAATC
*
5036910 GCAATGCGAATATATAAATC
1 GCAATGCGAATACATAAATC
5036930 GCAATGCGAAT
1 GCAATGCGAAT
5036941 CTGACTATCG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
19 1 0.02
20 43 0.69
21 17 0.27
22 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (20 bp):
GCAATGCGAATACATAAATC
Found at i:5036878 original size:41 final size:40
Alignment explanation
Indices: 5036833--5036966 Score: 119
Period size: 41 Copynumber: 3.3 Consensus size: 40
5036823 TAATCACGTT
* * *
5036833 GCGATTTTCATAATTTGCAATGCGAATACGTAAATCGCAAC
1 GCGA-TTTCATAAATCGCAATGCGAATACGAAAATCGCAAC
* * *
5036874 GCGATTACATAAATCGCAATGCGAATTAGGAAAATCGCAAT
1 GCGATTTCATAAATCGCAATGCGAA-TACGAAAATCGCAAC
* ** *
5036915 GCGAATAT-ATAAATCGCAATGCGAAT-CTGACTATCGCAAT
1 GCG-ATTTCATAAATCGCAATGCGAATAC-GAAAATCGCAAC
5036955 GCGATTTACATA
1 GCGATTT-CATA
5036967 GCGCCATTCG
Statistics
Matches: 76, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.04
40 32 0.42
41 39 0.51
42 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (40 bp):
GCGATTTCATAAATCGCAATGCGAATACGAAAATCGCAAC
Found at i:5037573 original size:19 final size:19
Alignment explanation
Indices: 5037509--5037593 Score: 81
Period size: 19 Copynumber: 4.7 Consensus size: 19
5037499 TAGTTTCGAG
*
5037509 AATGAAAATCGCAACACGGA
1 AATGAAAATCGCAACGC-GA
5037529 AATGAAAATCGCAA--CG-
1 AATGAAAATCGCAACGCGA
*
5037545 -A-GAGAATCGCAACGCGA
1 AATGAAAATCGCAACGCGA
*
5037562 AATGAAAATCGCAACGTGA
1 AATGAAAATCGCAACGCGA
**
5037581 AACCAAAATCGCA
1 AATGAAAATCGCA
5037594 TTGCGATTCT
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
14 10 0.18
15 1 0.02
16 2 0.04
17 1 0.02
18 2 0.04
19 25 0.45
20 14 0.25
ACGTcount: A:0.48, C:0.21, G:0.20, T:0.11
Consensus pattern (19 bp):
AATGAAAATCGCAACGCGA
Found at i:5037613 original size:14 final size:14
Alignment explanation
Indices: 5037594--5037647 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
5037584 CAAAATCGCA
5037594 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
5037608 TTGCGATTTTCATTTCGCG
1 TTGCGA--TTC---TCTCG
5037627 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
5037641 TTGCGAT
1 TTGCGAT
5037648 AGTCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
16 3 0.09
17 3 0.09
19 10 0.30
ACGTcount: A:0.09, C:0.24, G:0.22, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:5037636 original size:33 final size:33
Alignment explanation
Indices: 5037589--5037696 Score: 126
Period size: 33 Copynumber: 3.1 Consensus size: 33
5037579 GAAACCAAAA
*
5037589 TCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
**
5037622 TCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
5037655 TCCGCGTTGCGATTTTCATTCTCTCGTTGCGATTTTCATT
1 T-CGCGTTGCG------ATTCTCTCGTTGCGATTTTCATT
5037695 TC
1 TC
5037697 AACCAAAAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
33 31 0.49
34 9 0.14
39 1 0.02
40 22 0.35
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.44
Consensus pattern (33 bp):
TCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:5037673 original size:20 final size:20
Alignment explanation
Indices: 5037606--5037696 Score: 81
Period size: 20 Copynumber: 4.9 Consensus size: 20
5037596 GCGATTCTCT
5037606 CGTTGCGATTTTCATTT-CG
1 CGTTGCGATTTTCATTTCCG
*
5037625 CGTTGCGA--TTC---T-CT
1 CGTTGCGATTTTCATTTCCG
**
5037639 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTTCCG
*
5037659 CGTTGCGATTTTCA-TTCTCT
1 CGTTGCGATTTTCATTTC-CG
5037679 CGTTGCGATTTTCATTTC
1 CGTTGCGATTTTCATTTC
5037697 AACCAAAAGA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
14 10 0.17
16 2 0.03
17 3 0.05
19 12 0.21
20 28 0.48
21 3 0.05
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (20 bp):
CGTTGCGATTTTCATTTCCG
Found at i:5039553 original size:94 final size:93
Alignment explanation
Indices: 5039427--5039728 Score: 514
Period size: 94 Copynumber: 3.2 Consensus size: 93
5039417 GAAGTTAGTA
*
5039427 TTTGTCTTTTGGTTGAAGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTA
1 TTTGTCTTTTGGTTGAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTA
5039492 ACACTGTGAAGTTAGTATTTGTCTTTGT
66 ACACTGTGAAGTTAGTATTTGTCTTTGT
5039520 TTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTG-AAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
5039585 AACACTGTGAAGTTAGTATTTGTCTTTGT
65 AACACTGTGAAGTTAGTATTTGTCTTTGT
* * *
5039614 TTTGTCTTTTGGTTGAAAGAAAATTTGTTCGTTTGCTGCCAATTTTGCTAAACTGTGTATTCTTT
1 TTTGTCTTTTGGTTG-AAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTT
* * *
5039679 AATACTCTGAAGTTAGTATTTGTCTTTAT
65 AACACTGTGAAGTTAGTATTTGTCTTTGT
*
5039708 TTTGCCTTTTGGTTGAAGTAA
1 TTTGTCTTTTGGTTGAAGTAA
5039729 TGAAATCCAT
Statistics
Matches: 199, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
93 20 0.10
94 179 0.90
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (93 bp):
TTTGTCTTTTGGTTGAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTA
ACACTGTGAAGTTAGTATTTGTCTTTGT
Found at i:5039846 original size:19 final size:19
Alignment explanation
Indices: 5039819--5039928 Score: 69
Period size: 19 Copynumber: 6.3 Consensus size: 19
5039809 TCTTTTGGTT
*
5039819 GAAATGAAAATCGCAACGC
1 GAAACGAAAATCGCAACGC
**
5039838 GAAACGAAAATTACAA--C
1 GAAACGAAAATCGCAACGC
*
5039855 G--A-GAGAATCGCAACGC
1 GAAACGAAAATCGCAACGC
*
5039871 GAAATGAAAATCGCAA--C
1 GAAACGAAAATCGCAACGC
5039888 G--AC-AAAATCGCAACGC
1 GAAACGAAAATCGCAACGC
* *
5039904 GAAACCAAAAATCACAACGC
1 GAAA-CGAAAATCGCAACGC
*
5039924 AAAAC
1 GAAAC
5039929 TATAATCGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 22
0.69 0.10 0.22
Matches are distributed among these distances:
14 18 0.26
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 25 0.36
20 15 0.21
ACGTcount: A:0.51, C:0.24, G:0.17, T:0.08
Consensus pattern (19 bp):
GAAACGAAAATCGCAACGC
Found at i:5039869 original size:33 final size:33
Alignment explanation
Indices: 5039825--5039927 Score: 136
Period size: 33 Copynumber: 3.1 Consensus size: 33
5039815 GGTTGAAATG
* *
5039825 AAAATCGCAACGCGAAACGAAAATTACAACGAG
1 AAAATCGCAACGCGAAACGAAAATCACAACGAC
* * *
5039858 AGAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAACGCGAAACGAAAATCACAACGAC
*
5039891 AAAATCGCAACGCGAAACCAAAAATCACAACG-C
1 AAAATCGCAACGCGAAA-CGAAAATCACAACGAC
5039924 AAAA
1 AAAA
5039928 CTATAATCGC
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
33 49 0.82
34 11 0.18
ACGTcount: A:0.51, C:0.24, G:0.17, T:0.08
Consensus pattern (33 bp):
AAAATCGCAACGCGAAACGAAAATCACAACGAC
Found at i:5039914 original size:20 final size:20
Alignment explanation
Indices: 5039891--5039928 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5039881 TCGCAACGAC
* *
5039891 AAAATCGCAACGCGAAACCA
1 AAAATCACAACGCAAAACCA
5039911 AAAATCACAACGCAAAAC
1 AAAATCACAACGCAAAAC
5039929 TATAATCGCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.29, G:0.11, T:0.05
Consensus pattern (20 bp):
AAAATCACAACGCAAAACCA
Found at i:5039958 original size:19 final size:19
Alignment explanation
Indices: 5039934--5040047 Score: 120
Period size: 20 Copynumber: 5.8 Consensus size: 19
5039924 AAAACTATAA
*
5039934 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
*
5039953 TCGCGTTGCGATTTTTCGTT
1 TCGCGTTGCGA-TTTTCATT
*
5039973 TCGCGTTGCAATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
5039992 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
* **
5040012 TCACGTTGCGATAGTCATTTT
1 TCGCGTTGCGATTTTCA--TT
*
5040033 TCACGTTGCGATTTT
1 TCGCGTTGCGATTTT
5040048 AAGTTCCAGA
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
19 32 0.40
20 33 0.41
21 15 0.19
ACGTcount: A:0.12, C:0.20, G:0.19, T:0.48
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:5039974 original size:20 final size:20
Alignment explanation
Indices: 5039934--5040023 Score: 114
Period size: 19 Copynumber: 4.6 Consensus size: 20
5039924 AAAACTATAA
5039934 TCGCGTTGCGATTTTT-ATT
1 TCGCGTTGCGATTTTTCATT
*
5039953 TCGCGTTGCGATTTTTCGTT
1 TCGCGTTGCGATTTTTCATT
*
5039973 TCGCGTTGC-AATTTTCATT
1 TCGCGTTGCGATTTTTCATT
*
5039992 CTCTCGTTGCGA-TTTTCATT
1 -TCGCGTTGCGATTTTTCATT
*
5040012 TCACGTTGCGAT
1 TCGCGTTGCGAT
5040024 AGTCATTTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
19 34 0.55
20 27 0.44
21 1 0.02
ACGTcount: A:0.11, C:0.21, G:0.20, T:0.48
Consensus pattern (20 bp):
TCGCGTTGCGATTTTTCATT
Found at i:5040008 original size:39 final size:38
Alignment explanation
Indices: 5039934--5040047 Score: 120
Period size: 39 Copynumber: 2.9 Consensus size: 38
5039924 AAAACTATAA
* * *
5039934 TCGCGTTGCGATTTTTATTTCGCGTTGCGATTTTTCGTT
1 TCGCGTTGCGATTTTCATTTCACGTTGCGA-TTTTCATT
* *
5039973 TCGCGTTGCAATTTTCATTCTCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT-TCACGTTGCGATTTTCATT
* **
5040012 TCACGTTGCGATAGTCATTTTTCACGTTGCGATTTT
1 TCGCGTTGCGATTTTCA--TTTCACGTTGCGATTTT
5040048 AAGTTCCAGA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
39 37 0.59
40 24 0.38
41 2 0.03
ACGTcount: A:0.12, C:0.20, G:0.19, T:0.48
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCACGTTGCGATTTTCATT
Found at i:5040524 original size:21 final size:21
Alignment explanation
Indices: 5040500--5040566 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
5040490 TCATTCCTCG
5040500 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
5040521 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
5040542 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
5040563 AGAG
1 AGAG
5040567 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:5040525 original size:42 final size:42
Alignment explanation
Indices: 5040473--5040566 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
5040463 CCACTCCTAT
* *
5040473 CGTTGAAGAGGCCCCTATCATTCCTCG-AGA-GTCCCCTCCCAC
1 CGTTCAAGAGGCCACTATCA-TCCTCGAAGAGGT-CCCTCCCAC
* * *
5040515 CGTTCAAGAGGCCACTGTCATCGTTGAAGAGGTCCCTCCCAC
1 CGTTCAAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCAC
*
5040557 CATTCAAGAG
1 CGTTCAAGAG
5040567 CCCGATTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.21
Consensus pattern (42 bp):
CGTTCAAGAGGCCACTATCATCCTCGAAGAGGTCCCTCCCAC
Found at i:5041937 original size:14 final size:14
Alignment explanation
Indices: 5041918--5041953 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
5041908 ATTGTTTAAT
5041918 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
5041932 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
5041946 TGATTTGT
1 TGATTTGT
5041954 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:5042105 original size:33 final size:33
Alignment explanation
Indices: 5042060--5042139 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
5042050 AAAAATGACT
* * *
5042060 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
5042093 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
5042126 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
5042140 CTAAATTCGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:5042119 original size:19 final size:19
Alignment explanation
Indices: 5042060--5042120 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
5042050 AAAAATGACT
*
5042060 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
5042079 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
5042093 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
5042112 ATCGCAACG
1 ATCGCAACG
5042121 ACAAAATCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 10 0.29
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 19 0.54
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:5042197 original size:33 final size:33
Alignment explanation
Indices: 5042149--5042275 Score: 184
Period size: 33 Copynumber: 3.8 Consensus size: 33
5042139 ACTAAATTCG
* *
5042149 CGTTACGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* *
5042182 CGTTGTGATTTTCATTTCGCATTGCAATTCTCC-
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CCT
* *
5042215 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
5042248 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
5042276 AGTCATTTCC
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
32 1 0.01
33 80 0.96
34 2 0.02
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:5042239 original size:19 final size:19
Alignment explanation
Indices: 5042215--5042295 Score: 82
Period size: 19 Copynumber: 4.5 Consensus size: 19
5042205 GCAATTCTCC
5042215 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
5042234 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
5042248 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* **
5042267 CATTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTT-CG
5042287 CGTTGCGAT
1 CGTTGCGAT
5042296 AGACATTAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
19 24 0.48
20 10 0.20
ACGTcount: A:0.12, C:0.23, G:0.22, T:0.42
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:5042260 original size:66 final size:66
Alignment explanation
Indices: 5042149--5042272 Score: 212
Period size: 66 Copynumber: 1.9 Consensus size: 66
5042139 ACTAAATTCG
* *
5042149 CGTTACGATTTTCATTTCGCTTTGCGATTCCCTCGTTGTGATTTTCATTTCGCATTGCAATTCTC
1 CGTTACGATTTTCATTTCGCGTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCAATTCTC
5042214 C
66 C
* *
5042215 CGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 CGTTACGATTTTCATTTCGCGTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
5042273 GATAGTCATT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 54 1.00
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (66 bp):
CGTTACGATTTTCATTTCGCGTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCAATTCTC
C
Found at i:5042294 original size:20 final size:20
Alignment explanation
Indices: 5042248--5042341 Score: 68
Period size: 20 Copynumber: 4.7 Consensus size: 20
5042238 GCGATTCTCT
**
5042248 CGTTGCGATTTTCATTT-CG
1 CGTTGCGATAGTCATTTCCG
*
5042267 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* **
5042287 CGTTGCGATAGACA-TTAAG
1 CGTTGCGATAGTCATTTCCG
*
5042306 ATGATTGCGA-ACGTCATTTCCG
1 -CG-TTGCGATA-GTCATTTCCG
*
5042328 TGTTGCGATAGTCA
1 CGTTGCGATAGTCA
5042342 AATGAATGCC
Statistics
Matches: 58, Mismatches: 11, Indels: 11
0.73 0.14 0.14
Matches are distributed among these distances:
19 17 0.29
20 26 0.45
21 12 0.21
22 3 0.05
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:5044605 original size:14 final size:14
Alignment explanation
Indices: 5044586--5044622 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
5044576 TCCCGTGGCA
5044586 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
*
5044600 TTTTCTTTGGGGAC
1 TTTTCTTCGGGGAC
5044614 TTCTTCTTC
1 TT-TTCTTC
5044623 TTCTTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:5044843 original size:24 final size:24
Alignment explanation
Indices: 5044809--5044862 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
5044799 CTGAAAAATC
*
5044809 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
5044833 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
5044857 ATCAAA
1 ATCAAA
5044863 TTTCAAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:5045759 original size:21 final size:21
Alignment explanation
Indices: 5045733--5045787 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
5045723 GCGATTACGT
*
5045733 AATCGCATTGCGAATTAGGAA
1 AATCGCAATGCGAATTAGGAA
* * *
5045754 AATCGCAACGCGAATTTGGGA
1 AATCGCAATGCGAATTAGGAA
5045775 AATCGCAATGCGA
1 AATCGCAATGCGA
5045788 TAGTCAGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (21 bp):
AATCGCAATGCGAATTAGGAA
Found at i:5054272 original size:45 final size:44
Alignment explanation
Indices: 5054209--5054297 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 44
5054199 AATCCAAAGG
*
5054209 TAAGCACCCTACTTTTGAAGTTCTTGCA-TTTATCGTTAATTATT
1 TAAGCACCCTACTTTTGAAATTCTTG-ATTTTATCGTTAATTATT
* *
5054253 TAAGCAGCCCTAGTTTTGAAATTCTTGATTTTATGGTTAATTATT
1 TAAGCA-CCCTACTTTTGAAATTCTTGATTTTATCGTTAATTATT
5054298 CTTTCTTCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
44 7 0.17
45 33 0.82
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (44 bp):
TAAGCACCCTACTTTTGAAATTCTTGATTTTATCGTTAATTATT
Found at i:5057950 original size:36 final size:36
Alignment explanation
Indices: 5057906--5057989 Score: 136
Period size: 36 Copynumber: 2.4 Consensus size: 36
5057896 TATTTAAATC
5057906 TATTTTAAAAT-TTTATTTTAAAATAT-AGATTGATT
1 TATTTTAAAATATTTATTTTAAAATATGA-ATTGATT
*
5057941 TATTTTTAAATATTTATTTTAAAATATGAATTGATT
1 TATTTTAAAATATTTATTTTAAAATATGAATTGATT
5057977 TATTTTAAAATAT
1 TATTTTAAAATAT
5057990 GGATTGATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
35 10 0.22
36 34 0.76
37 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (36 bp):
TATTTTAAAATATTTATTTTAAAATATGAATTGATT
Found at i:5057962 original size:13 final size:14
Alignment explanation
Indices: 5057938--5057967 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5057928 ATATAGATTG
5057938 ATTTATTTTTAAAT
1 ATTTATTTTTAAAT
*
5057952 ATTTATTTTAAAAT
1 ATTTATTTTTAAAT
5057966 AT
1 AT
5057968 GAATTGATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTTATTTTTAAAT
Found at i:5057977 original size:22 final size:22
Alignment explanation
Indices: 5057952--5058184 Score: 280
Period size: 22 Copynumber: 10.6 Consensus size: 22
5057942 ATTTTTAAAT
5057952 ATTTATTTTAAAATATGAATTG
1 ATTTATTTTAAAATATGAATTG
*
5057974 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGAATTG
*
5057996 ATTTATTTTAAAATATGGAA--A
1 ATTTATTTTAAAATAT-GAATTG
*
5058017 ATTTTATTTTAAAATATGGATTG
1 A-TTTATTTTAAAATATGAATTG
**
5058040 ATTTATTTTAAAATATAGAA-AA
1 ATTTATTTTAAAATAT-GAATTG
*
5058062 AATTATTTTAAAATATCG-ATTG
1 ATTTATTTTAAAATAT-GAATTG
**
5058084 ATTTATTTTAAAATATGGAA-AA
1 ATTTATTTTAAAATAT-GAATTG
*
5058106 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGAATTG
*
5058128 ATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGAATTG
5058150 ATTTATTTTAAAATATTG-ATTG
1 ATTTATTTTAAAATA-TGAATTG
5058172 ATTTATTTTAAAA
1 ATTTATTTTAAAA
5058185 AATTTATTAT
Statistics
Matches: 183, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
21 6 0.03
22 169 0.92
23 8 0.04
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (22 bp):
ATTTATTTTAAAATATGAATTG
Found at i:5058001 original size:44 final size:44
Alignment explanation
Indices: 5057952--5058184 Score: 360
Period size: 44 Copynumber: 5.3 Consensus size: 44
5057942 ATTTTTAAAT
**
5057952 ATTTATTTTAAAATAT-GAATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGAA-AAATTTATTTTAAAATATGGATTG
*
5057996 ATTTATTTTAAAATATGGAAAATTTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGAAAAATTTATTTTAAAATATGGATTG
* * *
5058040 ATTTATTTTAAAATATAGAAAAAATTATTTTAAAATATCGATTG
1 ATTTATTTTAAAATATGGAAAAATTTATTTTAAAATATGGATTG
5058084 ATTTATTTTAAAATATGGAAAAATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAAATATGGAAAAATTTATTTTAAAATATGGATTG
*** *
5058128 ATTTATTTTAAAATATGGATTGATTTATTTTAAAATATTGATTG
1 ATTTATTTTAAAATATGGAAAAATTTATTTTAAAATATGGATTG
5058172 ATTTATTTTAAAA
1 ATTTATTTTAAAA
5058185 AATTTATTAT
Statistics
Matches: 174, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
44 171 0.98
45 3 0.02
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (44 bp):
ATTTATTTTAAAATATGGAAAAATTTATTTTAAAATATGGATTG
Found at i:5064668 original size:16 final size:17
Alignment explanation
Indices: 5064638--5064669 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5064628 ATATTTATTT
5064638 ATATAAAATATAATATA
1 ATATAAAATATAATATA
5064655 ATATAAAA-ATAATAT
1 ATATAAAATATAATAT
5064670 TATGATAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATATAAAATATAATATA
Found at i:5064709 original size:16 final size:17
Alignment explanation
Indices: 5064688--5064724 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
5064678 TAAAATATTG
5064688 TTTTAC-ATAATTACT-T
1 TTTTACAATAA-TACTAT
5064704 TTTTACAATAATACTAT
1 TTTTACAATAATACTAT
5064721 TTTT
1 TTTT
5064725 TGATAGCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTACAATAATACTAT
Found at i:5065431 original size:11 final size:11
Alignment explanation
Indices: 5065411--5065441 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
5065401 AGAAAGGGAT
5065411 AAGAAGGAAAGG
1 AAGAA-GAAAGG
5065423 AAGAAGAAAGG
1 AAGAAGAAAGG
5065434 AAGAAGAA
1 AAGAAGAA
5065442 GAAAGGGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (11 bp):
AAGAAGAAAGG
Found at i:5065441 original size:14 final size:14
Alignment explanation
Indices: 5065422--5065457 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
5065412 AGAAGGAAAG
5065422 GAAGAAGAAAGGAA
1 GAAGAAGAAAGGAA
*
5065436 GAAGAAGAAAGGGA
1 GAAGAAGAAAGGAA
5065450 GAAGAAGA
1 GAAGAAGA
5065458 GATCGGGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (14 bp):
GAAGAAGAAAGGAA
Found at i:5068645 original size:17 final size:15
Alignment explanation
Indices: 5068609--5068652 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 15
5068599 TTCTATGTAT
5068609 TTAT-ATATTTAATA
1 TTATAATATTTAATA
*
5068623 TTATAATATTTAAGTT
1 TTATAATATTTAA-TA
5068639 TTAATAATATTTAA
1 TT-ATAATATTTAA
5068653 CATTTGCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 3 0.12
17 11 0.42
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TTATAATATTTAATA
Found at i:5071413 original size:11 final size:11
Alignment explanation
Indices: 5071393--5071442 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
5071383 TCGATTACCT
*
5071393 TTCTTTCTTTC
1 TTCTTCCTTTC
5071404 TTCTTCCTTTC
1 TTCTTCCTTTC
5071415 -TCTTCCTTTCC
1 TTCTTCCTTT-C
*
5071426 TTC-ACCTTTC
1 TTCTTCCTTTC
5071436 TTTCTTC
1 -TTCTTC
5071443 TTCTTACAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
10 10 0.31
11 19 0.59
12 3 0.09
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (11 bp):
TTCTTCCTTTC
Found at i:5078179 original size:28 final size:28
Alignment explanation
Indices: 5078139--5078227 Score: 178
Period size: 28 Copynumber: 3.2 Consensus size: 28
5078129 TGAAGCCTGA
5078139 AATTCGAGCTCGATTGAAGCGAAAGAAT
1 AATTCGAGCTCGATTGAAGCGAAAGAAT
5078167 AATTCGAGCTCGATTGAAGCGAAAGAAT
1 AATTCGAGCTCGATTGAAGCGAAAGAAT
5078195 AATTCGAGCTCGATTGAAGCGAAAGAAT
1 AATTCGAGCTCGATTGAAGCGAAAGAAT
5078223 AATTC
1 AATTC
5078228 ACTCTGTGCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 61 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (28 bp):
AATTCGAGCTCGATTGAAGCGAAAGAAT
Found at i:5080762 original size:2 final size:2
Alignment explanation
Indices: 5080755--5080782 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
5080745 TTTATAAATA
5080755 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5080783 TAAATATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5080824 original size:13 final size:13
Alignment explanation
Indices: 5080806--5080830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5080796 TTATTTATTT
5080806 GGTTAATTCGGTC
1 GGTTAATTCGGTC
5080819 GGTTAATTCGGT
1 GGTTAATTCGGT
5080831 TAAAACTAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.32, T:0.40
Consensus pattern (13 bp):
GGTTAATTCGGTC
Found at i:5080871 original size:2 final size:2
Alignment explanation
Indices: 5080864--5080916 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
5080854 AGCTAAATAG
5080864 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5080906 TA TA TA TA TA T
1 TA TA TA TA TA T
5080917 TGTATTAAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5082057 original size:19 final size:20
Alignment explanation
Indices: 5082020--5082057 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
5082010 AGTGTTAATG
*
5082020 AATTTTAAGATTTTATATTA
1 AATTTTAAGATTATATATTA
5082040 AATTTTAA-ATTATATATT
1 AATTTTAAGATTATATATT
5082058 CGATTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTAAGATTATATATTA
Found at i:5086757 original size:21 final size:22
Alignment explanation
Indices: 5086729--5086778 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
5086719 AGATGAGAAA
*
5086729 ACCA-TTCATAAAGACATGAAG
1 ACCACTTCATAAAAACATGAAG
5086750 ACC-CTTCATAAAAACATGAAG
1 ACCACTTCATAAAAACATGAAG
5086771 ACCACTTC
1 ACCACTTC
5086779 GCATTGGAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (22 bp):
ACCACTTCATAAAAACATGAAG
Found at i:5093070 original size:37 final size:36
Alignment explanation
Indices: 5093019--5093154 Score: 211
Period size: 37 Copynumber: 3.7 Consensus size: 36
5093009 ATGAGATTGG
5093019 AGCAAAGTCAATCTTAAGCCTTCACCGAAAAGGAGTGA
1 AGCAAA-TCAATCTTAAGCCTTCACC-AAAAGGAGTGA
5093057 AGCAAATCAATCTTAAGCCTTCACCAAGAAGGAGTGA
1 AGCAAATCAATCTTAAGCCTTCACCAA-AAGGAGTGA
5093094 AGCAAATCAATCTTAAGCCTTCACCAAAGAGGAGTGA
1 AGCAAATCAATCTTAAGCCTTCACCAAA-AGGAGTGA
* *
5093131 AGCAAA-CCATCTTAAACCTTCACC
1 AGCAAATCAATCTTAAGCCTTCACC
5093155 GAAGAGTAAT
Statistics
Matches: 94, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
36 19 0.20
37 69 0.73
38 6 0.06
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (36 bp):
AGCAAATCAATCTTAAGCCTTCACCAAAAGGAGTGA
Found at i:5093185 original size:34 final size:35
Alignment explanation
Indices: 5093031--5093193 Score: 134
Period size: 37 Copynumber: 4.5 Consensus size: 35
5093021 CAAAGTCAAT
* * *
5093031 CTTAAGCCTTCACCGAAA-AGGAGTGAAGCAAATCAAT
1 CTTAAGCCTTCACC-AAAGAGGAATGAAGC-AA-CCAC
* * *
5093068 CTTAAGCCTTCACC-AAGAAGGAGTGAAGCAAATCAAT
1 CTTAAGCCTTCACCAAAG-AGGAATGAAGC-AA-CCAC
* *
5093105 CTTAAGCCTTCACCAAAGAGGAGTGAAGCAAACCAT
1 CTTAAGCCTTCACCAAAGAGGAATGAAGC-AACCAC
* * *
5093141 CTTAAACCTTCACCGAAGAGTAATGAAGC-ACCAC
1 CTTAAGCCTTCACCAAAGAGGAATGAAGCAACCAC
*
5093175 CTTAAGCCTTCACAAAAGA
1 CTTAAGCCTTCACCAAAGA
5093194 ATAGTGAAGC
Statistics
Matches: 114, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
34 20 0.18
35 2 0.02
36 28 0.25
37 61 0.54
38 3 0.03
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (35 bp):
CTTAAGCCTTCACCAAAGAGGAATGAAGCAACCAC
Found at i:5093200 original size:70 final size:71
Alignment explanation
Indices: 5093026--5093208 Score: 194
Period size: 70 Copynumber: 2.5 Consensus size: 71
5093016 TGGAGCAAAG
* * *
5093026 TCAATCTTAAGCCTTCACCGAAAAG-GAGTGAAGCAAATCAATCTTAAGCCTTCACCAAGAAGGA
1 TCAACCTTAAGCCTTCA-C-AAAAGAGAGTGAAGCAAA-CCATCTTAAACCTTCACCAAGAAGGA
*
5093090 GTGAAGCAAA
63 ATGAAGC-AA
* * *
5093100 TCAATCTTAAGCCTTCACCAAAGAGGAGTGAAGCAAACCATCTTAAACCTTCACCGAAG-AGTAA
1 TCAACCTTAAGCCTTCACAAAAGA-GAGTGAAGCAAACCATCTTAAACCTTCACC-AAGAAGGAA
5093164 TGAAGC-A
64 TGAAGCAA
* *
5093171 -CCACCTTAAGCCTTCACAAAAGAATAGTGAAGCAAACC
1 TCAACCTTAAGCCTTCACAAAAG-AGAGTGAAGCAAACC
5093209 CATCAGTAAG
Statistics
Matches: 96, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
70 32 0.33
71 2 0.02
72 4 0.04
73 26 0.27
74 32 0.33
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (71 bp):
TCAACCTTAAGCCTTCACAAAAGAGAGTGAAGCAAACCATCTTAAACCTTCACCAAGAAGGAATG
AAGCAA
Found at i:5093247 original size:22 final size:22
Alignment explanation
Indices: 5093222--5093289 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
5093212 CAGTAAGTAT
5093222 TTCGAGCATGATGCTTAAATCC
1 TTCGAGCATGATGCTTAAATCC
* * *
5093244 TTCGAGTCATCA-G--TAAGTCT
1 TTCGAG-CATGATGCTTAAATCC
5093264 TTCGAGCATGATGCTTAAATCC
1 TTCGAGCATGATGCTTAAATCC
5093286 TTCG
1 TTCG
5093290 GGTCATCTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
19 4 0.11
20 12 0.33
22 16 0.44
23 4 0.11
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (22 bp):
TTCGAGCATGATGCTTAAATCC
Found at i:5093268 original size:42 final size:42
Alignment explanation
Indices: 5093209--5093302 Score: 161
Period size: 42 Copynumber: 2.2 Consensus size: 42
5093199 GAAGCAAACC
5093209 CATCAGTAAGTATTTCGAGCATGATGCTTAAATCCTTCGAGT
1 CATCAGTAAGTATTTCGAGCATGATGCTTAAATCCTTCGAGT
* *
5093251 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
1 CATCAGTAAGTATTTCGAGCATGATGCTTAAATCCTTCGAGT
*
5093293 CATCTGTAAG
1 CATCAGTAAG
5093303 CCTTCAGAGC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (42 bp):
CATCAGTAAGTATTTCGAGCATGATGCTTAAATCCTTCGAGT
Found at i:5093313 original size:42 final size:42
Alignment explanation
Indices: 5093209--5093318 Score: 150
Period size: 42 Copynumber: 2.6 Consensus size: 42
5093199 GAAGCAAACC
**
5093209 CATCAGTAAGTATTTCGAGCATGATGCTTAAATCCTTCGAGT
1 CATCAGTAAGTCCTTCGAGCATGATGCTTAAATCCTTCGAGT
* *
5093251 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
1 CATCAGTAAGTCCTTCGAGCATGATGCTTAAATCCTTCGAGT
* *
5093293 CATCTGTAAG-CCTTCAGAGCAAGATG
1 CATCAGTAAGTCCTTC-GAGCATGATG
5093319 ATAAGTCATT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 4 0.06
42 58 0.94
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (42 bp):
CATCAGTAAGTCCTTCGAGCATGATGCTTAAATCCTTCGAGT
Found at i:5093615 original size:216 final size:216
Alignment explanation
Indices: 5093241--5094193 Score: 1564
Period size: 216 Copynumber: 4.4 Consensus size: 216
5093231 GATGCTTAAA
* *
5093241 TCCTTCGAGTCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCT
* *
5093306 TCAGAGCAAGATGATAAGTCATTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGA
66 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGA
*
5093371 ATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAATGTGATTTT
131 ATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTT
5093436 CAAAATTTCACAATTTATAAG
196 CAAAATTTCACAATTTATAAG
*
5093457 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCTTTCGGGTCATCTGTAAGCCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCT
* *
5093522 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGGGTAAGATGTTTTCACATGA
66 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGA
*
5093587 ATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGATATTTTTGAAAACGAAGAATGCGATTTT
131 ATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTT
5093652 CAAAATTTCACAATTTATAAG
196 CAAAATTTCACAATTTATAAG
* *
5093673 TCATTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAACCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCT
* * *
5093738 TTAGAGAAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGTAGGATGTTTTCACATGA
66 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGA
* * * *
5093803 ATTTGGAAATGAAAAAAATGATATTTTAAGAAGATGGAATTTTTTAAAACGAAGAATGCGATTTT
131 ATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTT
* * *
5093868 CTAAATTTTACAATTTAGAAG
196 CAAAATTTCACAATTTATAAG
* * * *
5093889 TCATTCGGGCCATCAGTAAGTCTTTCGAGCTTGATGTTTAAATCCTTCAGGTCATCTGTAAGCCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCT
*
5093954 TTAGAGCAAGATGATAAGTCCTTTGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGA
66 TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGA
* *
5094019 ATTTGAAAATGAAAAAAATAATGTTTTAAGAAGATGGAATTTTTGAAAACGAAGAATGCGATTTT
131 ATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTT
* * *
5094084 TAGAATTTCACGATTTATAAG
196 CAAAATTTCACAATTTATAAG
* * * * *
5094105 TTCTTTGGGCCATTAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTCGGGTCATCTGTAAGCCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCT
* *
5094170 TTAGAGTAAAATGATAAGTCCTTC
66 TTAGAGCAAGATGATAAGTCCTTC
5094194 AGACCATCAG
Statistics
Matches: 686, Mismatches: 51, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
216 686 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (216 bp):
TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGCCT
TTAGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAAACCTTCGGGTAGGATGTTTTCACATGA
ATTTGAAAATGAAAAAAATGATGTTTTAAGAAGATGAAATTTTTGAAAACGAAGAATGCGATTTT
CAAAATTTCACAATTTATAAG
Found at i:5101654 original size:41 final size:41
Alignment explanation
Indices: 5101594--5101755 Score: 171
Period size: 41 Copynumber: 3.9 Consensus size: 41
5101584 GATGGTTAAA
* *
5101594 TCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAG
1 TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGATAAG
* * ** * *
5101635 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCGTGATGTTTAAA
1 TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG-ATAAG
* * * * *
5101677 TCCTTAGTGTCATCTGTAAGCCTTTAGAGCAAGACGATAAG
1 TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGATAAG
* * *
5101718 TCCTTCGGGCCATCAATAAGTCTTTCGAGCAAGATGAT
1 TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGAT
5101756 TAAATCTTTC
Statistics
Matches: 93, Mismatches: 27, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
41 63 0.68
42 30 0.32
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (41 bp):
TCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATGATAAG
Found at i:5101728 original size:83 final size:83
Alignment explanation
Indices: 5101584--5101783 Score: 292
Period size: 83 Copynumber: 2.4 Consensus size: 83
5101574 ACTCATCAAG
* * *
5101584 GATGGTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATGATAAGTCCTTCGGGCCATC
1 GATGATTAAATCCTTAGGGTCATCTGTAAGCCTTTAGAGCAAGACGATAAGTCCTTCGGGCCATC
* **
5101649 AGTAAGTCTTTCGAGCGT
66 AATAAGTCTTTCGAGCAA
* *
5101667 GATGTTTAAATCCTTAGTGTCATCTGTAAGCCTTTAGAGCAAGACGATAAGTCCTTCGGGCCATC
1 GATGATTAAATCCTTAGGGTCATCTGTAAGCCTTTAGAGCAAGACGATAAGTCCTTCGGGCCATC
5101732 AATAAGTCTTTCGAGCAA
66 AATAAGTCTTTCGAGCAA
* * * *
5101750 GATGATTAAATCTTTCGGGTAATTTGTAAGCCTT
1 GATGATTAAATCCTTAGGGTCATCTGTAAGCCTT
5101784 CACTAAAGAG
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 104 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (83 bp):
GATGATTAAATCCTTAGGGTCATCTGTAAGCCTTTAGAGCAAGACGATAAGTCCTTCGGGCCATC
AATAAGTCTTTCGAGCAA
Found at i:5101932 original size:56 final size:55
Alignment explanation
Indices: 5101815--5101988 Score: 173
Period size: 56 Copynumber: 3.1 Consensus size: 55
5101805 AATCACATCA
* *
5101815 GAAGATTTCTCGAGTTCTATACTCCCTGAAAGGAATA-GGAGC--GAACCCAGTTTTCA
1 GAAGATTTCTCGAGTT-TATACTCCCTGAAAGGAATAGGGAGCAAGAA--C-GTTTGCT
* *
5101871 AAAGATTTCTTGAGTTATATACTCCCTGAAAGGAATAGGGAGCAAGAACGTTTGCT
1 GAAGATTTCTCGAGTT-TATACTCCCTGAAAGGAATAGGGAGCAAGAACGTTTGCT
*
5101927 GAAGATTAT-TCGAGTCTTATACTCCCTGAAA-GAATAGAGAG-AAGAGACGTTTG-T
1 GAAGATT-TCTCGAGT-TTATACTCCCTGAAAGGAATAGGGAGCAAGA-ACGTTTGCT
5101981 GGAAGATT
1 -GAAGATT
5101989 GTGCGAGTTT
Statistics
Matches: 103, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
54 5 0.05
55 23 0.22
56 64 0.62
57 8 0.08
59 3 0.03
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.28
Consensus pattern (55 bp):
GAAGATTTCTCGAGTTTATACTCCCTGAAAGGAATAGGGAGCAAGAACGTTTGCT
Found at i:5101996 original size:55 final size:56
Alignment explanation
Indices: 5101888--5101996 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 56
5101878 TCTTGAGTTA
* *
5101888 TATACTCCCTGAAAGGAATAGGGAGCAAGAACGTTTGCTGAAGATTATTCGAGTCT
1 TATACTCCCTGAAAGGAATAGAGAGCAAGAACGTTTGCTGAAGATTATGCGAGTCT
*
5101944 TATACTCCCTGAAA-GAATAGAGAG-AAGAGACGTTTG-TGGAAGATTGTGCGAGT
1 TATACTCCCTGAAAGGAATAGAGAGCAAGA-ACGTTTGCT-GAAGATTATGCGAGT
5101997 TTCATGCACC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
54 5 0.10
55 29 0.60
56 14 0.29
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (56 bp):
TATACTCCCTGAAAGGAATAGAGAGCAAGAACGTTTGCTGAAGATTATGCGAGTCT
Found at i:5103413 original size:23 final size:22
Alignment explanation
Indices: 5103387--5103429 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
5103377 CTTTAAGTTT
*
5103387 TTTTTCTTTTTATTTAGAATATA
1 TTTTTATTTTT-TTTAGAATATA
*
5103410 TTTTTATTTTTTTTTGAATA
1 TTTTTATTTTTTTTAGAATA
5103430 AAAAAAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.70
Consensus pattern (22 bp):
TTTTTATTTTTTTTAGAATATA
Found at i:5110382 original size:23 final size:23
Alignment explanation
Indices: 5110351--5110403 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
5110341 GGAATCGATA
*
5110351 CCCCC-TTGAAGGGGAACCAATT
1 CCCCCTTTGAAGGAGAACCAATT
* **
5110373 CCCCCTTTGAATGAGAACTGATT
1 CCCCCTTTGAAGGAGAACCAATT
5110396 CCCCCTTT
1 CCCCCTTT
5110404 TAGGGAATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.26
Consensus pattern (23 bp):
CCCCCTTTGAAGGAGAACCAATT
Found at i:5110914 original size:13 final size:13
Alignment explanation
Indices: 5110896--5110929 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
5110886 TGTCTATTGA
5110896 TTTTCAAACCTT-G
1 TTTTCAAA-CTTAG
5110909 TTTTCAAACTTAG
1 TTTTCAAACTTAG
5110922 TTTTCAAA
1 TTTTCAAA
5110930 ATTGCCCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.15
13 17 0.85
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (13 bp):
TTTTCAAACTTAG
Found at i:5112891 original size:23 final size:23
Alignment explanation
Indices: 5112865--5112909 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
5112855 CACCACAGCT
*
5112865 CGTATAAATGCACCGAAGTGCCC
1 CGTAGAAATGCACCGAAGTGCCC
* * *
5112888 CGTAGAATTGCCCCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
5112910 ATATAATGAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCC
Found at i:5113158 original size:149 final size:149
Alignment explanation
Indices: 5112888--5113192 Score: 583
Period size: 149 Copynumber: 2.0 Consensus size: 149
5112878 CGAAGTGCCC
* * *
5112888 CGTAGAATTGCCCCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
1 CGTAGACTTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
5112953 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
5113018 CATATGTCCCTAAGAACCG
131 CATATGTCCCTAAGAACCG
5113037 CGTAGACTTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
1 CGTAGACTTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
5113102 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
66 CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
5113167 CATATGTCCCTAAGAACCG
131 CATATGTCCCTAAGAACCG
5113186 CGTAGAC
1 CGTAGAC
5113193 CCTCGACTCT
Statistics
Matches: 153, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (149 bp):
CGTAGACTTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCTTTAAGAAT
CATATACATATGCTAGGGATCAAGTATGTGTCTTTCCAGACTTCACACATGTTCCAAAGAATATA
CATATGTCCCTAAGAACCG
Found at i:5113849 original size:21 final size:21
Alignment explanation
Indices: 5113825--5113869 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5113815 TCTTGTTCGT
* *
5113825 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
5113846 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
5113867 TTG
1 TTG
5113870 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:5115209 original size:19 final size:20
Alignment explanation
Indices: 5115172--5115209 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
5115162 AGTGTTAATG
*
5115172 AATTTTAAGATTTTATATTA
1 AATTTTAAGATTATATATTA
5115192 AATTTTAA-ATTATATATT
1 AATTTTAAGATTATATATT
5115210 CGATTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTAAGATTATATATTA
Found at i:5115561 original size:76 final size:76
Alignment explanation
Indices: 5115353--5115560 Score: 319
Period size: 76 Copynumber: 2.7 Consensus size: 76
5115343 TTCAAGCTAA
5115353 AAATAACAGTTTACTCAGAGGGTATCGATTCCCCCCAATAGGGAACCGATTTCCCCCTGAAAGGT
1 AAATAACAGTTTACTCAGAGGGTATCGATTCCCCCCAATAGGGAACCGA-TTCCCCCTGAAAGGT
*
5115418 TTTGGCTCCGAG
65 TTTGGCTCCAAG
*
5115430 AAATAATAGTTTACTCAGAGGGTATCGATTCCCCCCAATAGGGAACCGATTCCCCCTGAAAGGTT
1 AAATAACAGTTTACTCAGAGGGTATCGATTCCCCCCAATAGGGAACCGATTCCCCCTGAAAGGTT
5115495 TTGGCTCCAAG
66 TTGGCTCCAAG
* * * * * * *
5115506 AAATAACAGATTACTCGGAGGGAACCGATTCCCCCC-ATGGGGTACTGATTCCCCC
1 AAATAACAGTTTACTCAGAGGGTATCGATTCCCCCCAATAGGGAACCGATTCCCCC
5115561 CATCTCATAA
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
75 16 0.13
76 57 0.47
77 48 0.40
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (76 bp):
AAATAACAGTTTACTCAGAGGGTATCGATTCCCCCCAATAGGGAACCGATTCCCCCTGAAAGGTT
TTGGCTCCAAG
Found at i:5117545 original size:20 final size:21
Alignment explanation
Indices: 5117520--5117571 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
5117510 TTTTCCCAAT
*
5117520 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
5117540 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
5117561 TCGCAATGCGA
1 TCGCAATGCGA
5117572 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:5117588 original size:20 final size:20
Alignment explanation
Indices: 5117560--5117613 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
5117550 AATTGGGAAA
5117560 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* *
5117580 ATCGTAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
5117600 ATCGCAATGCGATA
1 ATCGCAATGCGATA
5117614 ATACAAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:5118247 original size:19 final size:19
Alignment explanation
Indices: 5118211--5118252 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
5118201 ACGAGAGAAT
*
5118211 CGCAACGCGAAATAAAAAA
1 CGCAACGCGAAACAAAAAA
* *
5118230 CGCAACGCGAAACCAAAAT
1 CGCAACGCGAAACAAAAAA
5118249 CGCA
1 CGCA
5118253 TTGCGATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.50, C:0.29, G:0.17, T:0.05
Consensus pattern (19 bp):
CGCAACGCGAAACAAAAAA
Found at i:5118377 original size:24 final size:19
Alignment explanation
Indices: 5118248--5118416 Score: 222
Period size: 19 Copynumber: 9.1 Consensus size: 19
5118238 GAAACCAAAA
*
5118248 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
5118267 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
5118281 TCTCGTTGCTATTTTCATT
1 TCGCGTTGCGATTTTCATT
5118300 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
5118319 TCGCGTTGTGATTTTCATT
1 TCGCGTTGCGATTTTCATT
5118338 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
5118357 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
5118376 TCGCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
5118395 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
5118415 TC
1 TC
5118417 AACCAAAAGA
Statistics
Matches: 131, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
14 9 0.07
16 3 0.02
17 3 0.02
19 99 0.76
20 17 0.13
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:5120499 original size:21 final size:21
Alignment explanation
Indices: 5120475--5120541 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
5120465 TTATTCCTCG
5120475 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
5120496 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
5120517 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
5120538 AGAG
1 AGAG
5120542 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:5121918 original size:14 final size:14
Alignment explanation
Indices: 5121899--5121934 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
5121889 ATTGTTTAAT
5121899 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
* *
5121913 TGATTTGTACAAGT
1 TGATTTGTAAAAGG
5121927 TGATTTGT
1 TGATTTGT
5121935 TTAATTAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:5122135 original size:19 final size:19
Alignment explanation
Indices: 5122113--5122263 Score: 71
Period size: 19 Copynumber: 8.7 Consensus size: 19
5122103 CGAAATTAAA
5122113 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
5122132 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
5122147 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
5122165 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
5122179 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
5122198 TTCGCATTGC--TATTC--
1 TTCGCGTTGCGATTTTCAT
*
5122213 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
5122231 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
5122250 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
5122264 AGACATTAAG
Statistics
Matches: 93, Mismatches: 23, Indels: 31
0.63 0.16 0.21
Matches are distributed among these distances:
14 26 0.28
16 7 0.08
17 7 0.08
19 43 0.46
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:5122159 original size:33 final size:32
Alignment explanation
Indices: 5122117--5122243 Score: 184
Period size: 33 Copynumber: 3.9 Consensus size: 32
5122107 ATTAAATTCG
5122117 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
5122150 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
*
5122183 CGTTGCGATTTTCATTTCGCATTGCTATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
5122216 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
5122244 AGTAATTTCC
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
31 3 0.04
33 78 0.93
35 3 0.04
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:5122206 original size:66 final size:66
Alignment explanation
Indices: 5122110--5122242 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
5122100 ACGCGAAATT
*
5122110 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
5122175 G
66 G
* *
5122176 AAATTAGCGTTGCGATTTTCATTTCGCATTGCTATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
5122241 G
66 G
5122242 A
1 A
5122243 TAGTAATTTC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.42
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:5124766 original size:24 final size:24
Alignment explanation
Indices: 5124732--5124778 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
5124722 CTGAAACATC
*
5124732 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAT
*
5124756 ATCAAAGTCCGGGTATTGACCAA
1 ATCAAAATCCGGGTATTGACCAA
5124779 GATTAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAT
Found at i:5125876 original size:20 final size:20
Alignment explanation
Indices: 5125837--5125895 Score: 100
Period size: 20 Copynumber: 2.9 Consensus size: 20
5125827 ATTCATTTGA
5125837 CTATCGCAACGCGAAAAATGG
1 CTATCGCAACGCG-AAAATGG
5125858 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
5125878 CTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
5125896 CGCAATGCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
20 24 0.65
21 13 0.35
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:5125955 original size:19 final size:19
Alignment explanation
Indices: 5125914--5125981 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
5125904 GAAATGAAAA
5125914 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
5125930 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
5125947 TCGCATTGCGATTTTTATT
1 TCGCATTGCGATTTTCATT
5125966 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
5125982 TCGTTGCGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
14 11 0.24
16 3 0.07
17 3 0.07
19 28 0.62
ACGTcount: A:0.13, C:0.21, G:0.18, T:0.49
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:5126116 original size:14 final size:14
Alignment explanation
Indices: 5126097--5126133 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
5126087 CATCAATTAA
5126097 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
5126111 ACAAATCATCTTTT
1 ACAAATCAACATTT
5126125 ACAAATCAA
1 ACAAATCAA
5126134 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:5128007 original size:19 final size:19
Alignment explanation
Indices: 5127983--5128067 Score: 82
Period size: 19 Copynumber: 4.5 Consensus size: 19
5127973 GAAACTTAAA
*
5127983 ATCGCAAAGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
5128002 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
*** **
5128022 ATCGCAATTTGAAATGAAA
1 ATCGCAACGCGAAATGACT
*
5128041 ATCGCAACGCGAAATGA-A
1 ATCGCAACGCGAAATGACT
5128059 ATCGCAACG
1 ATCGCAACG
5128068 ACAAAATCGC
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
18 10 0.19
19 29 0.54
20 15 0.28
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.16
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:5128026 original size:39 final size:38
Alignment explanation
Indices: 5127983--5128056 Score: 94
Period size: 39 Copynumber: 1.9 Consensus size: 38
5127973 GAAACTTAAA
**
5127983 ATCGCAAAGCGAAATGACTATCGCAACGCGGAAATGGCT
1 ATCGCAAAGCGAAATGAAAATCGCAACGC-GAAATGGCT
***
5128022 ATCGCAATTTGAAATGAAAATCGCAACGCGAAATG
1 ATCGCAAAGCGAAATGAAAATCGCAACGCGAAATG
5128057 AAATCGCAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
38 6 0.20
39 24 0.80
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (38 bp):
ATCGCAAAGCGAAATGAAAATCGCAACGCGAAATGGCT
Found at i:5128074 original size:19 final size:19
Alignment explanation
Indices: 5128033--5128074 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
5128023 TCGCAATTTG
*
5128033 AAATGAAAATCGCAACGCG
1 AAATGAAAATCGCAACGCA
5128052 AAATG-AAATCGCAACGACA
1 AAATGAAAATCGCAACG-CA
5128071 AAAT
1 AAAT
5128075 CGCAACGCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.52, C:0.19, G:0.17, T:0.12
Consensus pattern (19 bp):
AAATGAAAATCGCAACGCA
Found at i:5128095 original size:18 final size:17
Alignment explanation
Indices: 5128039--5128096 Score: 59
Period size: 18 Copynumber: 3.5 Consensus size: 17
5128029 TTTGAAATGA
*
5128039 AAATCGCAACGCGAAATG
1 AAATCGCAACGCGAAA-C
*
5128057 AAATCGCAA--CGACA-
1 AAATCGCAACGCGAAAC
5128071 AAATCGCAACGCGAAAC
1 AAATCGCAACGCGAAAC
5128088 ACAATCGCA
1 A-AATCGCA
5128097 TTGCGATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 9 0.26
16 8 0.24
17 1 0.03
18 16 0.47
ACGTcount: A:0.47, C:0.28, G:0.17, T:0.09
Consensus pattern (17 bp):
AAATCGCAACGCGAAAC
Found at i:5128137 original size:14 final size:14
Alignment explanation
Indices: 5128114--5128171 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
5128104 TTTCATTTCG
5128114 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
* *
5128128 CGTTGTGATTTCATTT
1 CGTTGCGATTT--TGT
5128144 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
5128160 CGTTGCGATTTT
1 CGTTGCGATTTT
5128172 CATTTGCATT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 20 0.56
16 8 0.22
18 8 0.22
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:5128143 original size:32 final size:33
Alignment explanation
Indices: 5128097--5128186 Score: 148
Period size: 32 Copynumber: 2.8 Consensus size: 33
5128087 CACAATCGCA
*
5128097 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
*
5128130 TTGTGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
5128162 TTGCGATTTTCATTT-GCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
5128187 AGCCATTTCC
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
32 40 0.75
33 13 0.25
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:5128205 original size:20 final size:20
Alignment explanation
Indices: 5128180--5128225 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
5128170 TTCATTTGCA
5128180 TTGCGATAGCCATTTCCGCG
1 TTGCGATAGCCATTTCCGCG
* * *
5128200 TTGCGATAGTCATTTTCGTG
1 TTGCGATAGCCATTTCCGCG
5128220 TTGCGA
1 TTGCGA
5128226 AAGTAAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCGCG
Found at i:5128725 original size:18 final size:18
Alignment explanation
Indices: 5128699--5128734 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
5128689 GATGATGGCT
*
5128699 TGGGTGAGGTGATAGCTC
1 TGGGCGAGGTGATAGCTC
*
5128717 TGGGCGAGGTGATGGCTC
1 TGGGCGAGGTGATAGCTC
5128735 CGAAGTGGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.47, T:0.25
Consensus pattern (18 bp):
TGGGCGAGGTGATAGCTC
Found at i:5129180 original size:164 final size:164
Alignment explanation
Indices: 5128982--5129305 Score: 591
Period size: 164 Copynumber: 2.0 Consensus size: 164
5128972 GGTCCGTTCC
5128982 TCTTCCAGGAAATAGCCCTGGGAATATCATTTGAAGTTTTTATTGC-TATGTCTTCATGGCGGGA
1 TCTTCCAGGAAATAGCCCTGGGAATATCATTTGAAGTTTTT-TTGCATATGTCTTCATGGCGGGA
*
5129046 AAGGCCTCAAATATCCAATCTACAAACATATAATAACAAACATTAGTAATTGTTAAAT-ATTACT
65 AAGGCCTCAAATATCCAATCTACAAACAAATAATAACAAACATTAGTAATTGTTAAATAATTAC-
5129110 TATAATTTTGGAAACATCATATAAAAATTCTTACTTT
129 TATAA-TTTGGAAACATCATATAAAAATTCTTACTTT
5129147 TCTTCCAGG-AATAGCCCTGGGAATATCATTTGAAGTTTTTTTGCATATGTCTTCATGGCGGGAA
1 TCTTCCAGGAAATAGCCCTGGGAATATCATTTGAAGTTTTTTTGCATATGTCTTCATGGCGGGAA
5129211 AGGCCTCAAATATCCAATCTACAAACAAATAATAACAAACATTAGTAATTGTTAAATAATTACTA
66 AGGCCTCAAATATCCAATCTACAAACAAATAATAACAAACATTAGTAATTGTTAAATAATTACTA
5129276 TAATTTGGAAACATCATATAAAAATTCTTA
131 TAATTTGGAAACATCATATAAAAATTCTTA
5129306 TTTAAAGGCC
Statistics
Matches: 156, Mismatches: 1, Indels: 6
0.96 0.01 0.04
Matches are distributed among these distances:
163 31 0.20
164 111 0.71
165 14 0.09
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (164 bp):
TCTTCCAGGAAATAGCCCTGGGAATATCATTTGAAGTTTTTTTGCATATGTCTTCATGGCGGGAA
AGGCCTCAAATATCCAATCTACAAACAAATAATAACAAACATTAGTAATTGTTAAATAATTACTA
TAATTTGGAAACATCATATAAAAATTCTTACTTT
Found at i:5130781 original size:20 final size:20
Alignment explanation
Indices: 5130720--5130833 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
5130710 GATTATGTAT
5130720 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
5130740 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
5130760 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* * ** *
5130780 TATCTCGTTACGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
* *
5130801 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
5130821 TATCGCATTGCGA
1 TATCGCGTTGCGA
5130834 TTTTCCCAAT
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
19 3 0.04
20 62 0.79
21 11 0.14
22 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:5130852 original size:21 final size:21
Alignment explanation
Indices: 5130823--5130915 Score: 100
Period size: 20 Copynumber: 4.5 Consensus size: 21
5130813 ATAGTCAGTA
5130823 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
5130844 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
5130864 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
5130885 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
5130905 TCGCATTGCGA
1 TCGCATTGCGA
5130916 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:5130853 original size:41 final size:41
Alignment explanation
Indices: 5130823--5130915 Score: 150
Period size: 41 Copynumber: 2.3 Consensus size: 41
5130813 ATAGTCAGTA
* *
5130823 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
* *
5130864 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
5130905 TCGCATTGCGA
1 TCGCATTGCGA
5130916 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:5135284 original size:22 final size:20
Alignment explanation
Indices: 5135232--5135288 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
5135222 TTAGTCAGGT
*
5135232 TTAGTTGAGGCTGTTAGAGG
1 TTAGTTGAGTCTGTTAGAGG
*
5135252 TTAGTTATGAGTCTGTTAAGGGAG
1 TTAG-T-TGAGTCTGTT-AGAG-G
5135276 TTAGTTGAGTCTG
1 TTAGTTGAGTCTG
5135289 GTATACAAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 4 0.13
21 1 0.03
22 17 0.55
23 4 0.13
24 5 0.16
ACGTcount: A:0.21, C:0.05, G:0.35, T:0.39
Consensus pattern (20 bp):
TTAGTTGAGTCTGTTAGAGG
Found at i:5144682 original size:49 final size:49
Alignment explanation
Indices: 5144622--5144720 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
5144612 TAGCTTTGAA
5144622 ATCACAAAAGTGTAAACAAGTTCTTTTCACAAACTGTTATAACCTTCCT
1 ATCACAAAAGTGTAAACAAGTTCTTTTCACAAACTGTTATAACCTTCCT
* *
5144671 ATCACACAAGTGTAAATAAGTTCTTTTCACAAACTGTTATAACCTTCCT
1 ATCACAAAAGTGTAAACAAGTTCTTTTCACAAACTGTTATAACCTTCCT
5144720 A
1 A
5144721 CGCATCTCCC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.33
Consensus pattern (49 bp):
ATCACAAAAGTGTAAACAAGTTCTTTTCACAAACTGTTATAACCTTCCT
Found at i:5144830 original size:20 final size:16
Alignment explanation
Indices: 5144786--5144816 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5144776 ACAAATTCAA
5144786 CTGAAGCATCATATGC
1 CTGAAGCATCATATGC
*
5144802 CTTAAGCATCATATG
1 CTGAAGCATCATATG
5144817 TCATCCTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (16 bp):
CTGAAGCATCATATGC
Found at i:5146604 original size:24 final size:25
Alignment explanation
Indices: 5146577--5146627 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 25
5146567 TTTATGTGGA
*
5146577 TATTCTCTTGAATTGAT-TATTCGG
1 TATTCTCTTGAATTGATCTACTCGG
* * *
5146601 TATTGTTTTTAATTGATCTACTCGG
1 TATTCTCTTGAATTGATCTACTCGG
5146626 TA
1 TA
5146628 GTAAATTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.51
Consensus pattern (25 bp):
TATTCTCTTGAATTGATCTACTCGG
Found at i:5149848 original size:20 final size:21
Alignment explanation
Indices: 5149819--5149890 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 21
5149809 AAATGACCAA
5149819 TAAATTCGCAACGCGAA-CTC
1 TAAATTCGCAACGCGAATCTC
* * *
5149839 TAATTTCGCAAC-CCAATTTC
1 TAAATTCGCAACGCGAATCTC
* *
5149859 TAAATTCGCAACGCGAATTTT
1 TAAATTCGCAACGCGAATCTC
5149880 TAAA-TCGCAAC
1 TAAATTCGCAAC
5149891 ACAGAAGTCA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
19 3 0.07
20 31 0.70
21 10 0.23
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (21 bp):
TAAATTCGCAACGCGAATCTC
Found at i:5150070 original size:22 final size:22
Alignment explanation
Indices: 5150045--5150102 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
5150035 CTACGGCGAC
*
5150045 ATCCGTCCCTATCTCCGACGTA
1 ATCCGTCCCTATCTCCGACGAA
*
5150067 ATCCGTCCCCATCTCCGACGAA
1 ATCCGTCCCTATCTCCGACGAA
5150089 ATCCGT--CTATCTCC
1 ATCCGTCCCTATCTCC
5150103 ATCTCTCATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 7 0.21
22 26 0.79
ACGTcount: A:0.19, C:0.43, G:0.12, T:0.26
Consensus pattern (22 bp):
ATCCGTCCCTATCTCCGACGAA
Found at i:5152463 original size:4 final size:4
Alignment explanation
Indices: 5152454--5152499 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
5152444 TTTTTTGGCA
* * * *
5152454 TTAT TTAT TTAT TTAT TTAT TTAC TGAT TTAT GTAT TAAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
5152500 TCAGCGGTCC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (4 bp):
TTAT
Found at i:5152633 original size:21 final size:21
Alignment explanation
Indices: 5152609--5152709 Score: 107
Period size: 21 Copynumber: 4.8 Consensus size: 21
5152599 CCCACTAGTG
*
5152609 CCTCCTATTGTTCAAGAGGCC
1 CCTCCTATCGTTCAAGAGGCC
5152630 CCT-CTCATCGTTCAAGAGGCC
1 CCTCCT-ATCGTTCAAGAGGCC
*
5152651 CCTCCTACCGTTCAAGAGGCC
1 CCTCCTATCGTTCAAGAGGCC
* *
5152672 CCT-GTCATCGTTCAAGAGGTC
1 CCTCCT-ATCGTTCAAGAGGCC
* * *
5152693 TCTCCCACCGTTCAAGA
1 CCTCCTATCGTTCAAGA
5152710 CCTCGATTCA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
20 3 0.04
21 62 0.93
22 2 0.03
ACGTcount: A:0.20, C:0.37, G:0.19, T:0.25
Consensus pattern (21 bp):
CCTCCTATCGTTCAAGAGGCC
Found at i:5152668 original size:42 final size:42
Alignment explanation
Indices: 5152609--5152709 Score: 148
Period size: 42 Copynumber: 2.4 Consensus size: 42
5152599 CCCACTAGTG
**
5152609 CCTCCTATTGTTCAAGAGGCCCCTCTCATCGTTCAAGAGGCC
1 CCTCCTACCGTTCAAGAGGCCCCTCTCATCGTTCAAGAGGCC
* *
5152651 CCTCCTACCGTTCAAGAGGCCCCTGTCATCGTTCAAGAGGTC
1 CCTCCTACCGTTCAAGAGGCCCCTCTCATCGTTCAAGAGGCC
* *
5152693 TCTCCCACCGTTCAAGA
1 CCTCCTACCGTTCAAGA
5152710 CCTCGATTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.20, C:0.37, G:0.19, T:0.25
Consensus pattern (42 bp):
CCTCCTACCGTTCAAGAGGCCCCTCTCATCGTTCAAGAGGCC
Found at i:5154147 original size:37 final size:37
Alignment explanation
Indices: 5154099--5154212 Score: 115
Period size: 37 Copynumber: 3.4 Consensus size: 37
5154089 AAAAATTGAT
*
5154099 TTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGC
1 TTGTTTAATTGATGTGGAAATAAGAATTATTTTTTGC
*
5154136 TTGTTTAATTGATTTGG-AA-AAG--TTGA-----T--
1 TTGTTTAATTGATGTGGAAATAAGAATT-ATTTTTTGC
*
5154163 TTGTTTAATTGATGTGTAAATAAGAATTATTTTTTGC
1 TTGTTTAATTGATGTGGAAATAAGAATTATTTTTTGC
5154200 TTGTTTAATTGAT
1 TTGTTTAATTGAT
5154213 TTGTAAAAGT
Statistics
Matches: 61, Mismatches: 4, Indels: 24
0.69 0.04 0.27
Matches are distributed among these distances:
27 15 0.25
28 2 0.03
29 4 0.07
30 1 0.02
31 2 0.03
33 2 0.03
34 1 0.02
35 4 0.07
36 2 0.03
37 28 0.46
ACGTcount: A:0.30, C:0.02, G:0.18, T:0.50
Consensus pattern (37 bp):
TTGTTTAATTGATGTGGAAATAAGAATTATTTTTTGC
Found at i:5154184 original size:64 final size:64
Alignment explanation
Indices: 5154079--5154231 Score: 270
Period size: 64 Copynumber: 2.4 Consensus size: 64
5154069 TGAATTTTGC
*
5154079 ATTGATTTGTAAAAATTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTA
1 ATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTA
* * *
5154143 ATTGATTTGGAAAAGTTGATTTGTTTAATTGATGTGTAAATAAGAATTATTTTTTGCTTGTTTA
1 ATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTA
5154207 ATTGATTTGTAAAAGTTGATTTGTT
1 ATTGATTTGTAAAAGTTGATTTGTT
5154232 GTTTATTCAA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 84 1.00
ACGTcount: A:0.31, C:0.01, G:0.18, T:0.50
Consensus pattern (64 bp):
ATTGATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTA
Found at i:5154360 original size:40 final size:40
Alignment explanation
Indices: 5154300--5154377 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
5154290 AACGCGAAAA
*
5154300 TCAAATTCGCAACGCAAAAGTCAAATTCGTGTTGCGATAG
1 TCAAATTCGCAACGCAAAAGTCAAATTCGCGTTGCGATAG
*
5154340 TCAAATTCGCAACGCGAAAGTCAAATTCGCGTTGCGAT
1 TCAAATTCGCAACGCAAAAGTCAAATTCGCGTTGCGAT
5154378 TTTCGGTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (40 bp):
TCAAATTCGCAACGCAAAAGTCAAATTCGCGTTGCGATAG
Found at i:5154376 original size:20 final size:20
Alignment explanation
Indices: 5154285--5154369 Score: 107
Period size: 20 Copynumber: 4.2 Consensus size: 20
5154275 AAGGTACACT
*
5154285 TTCGCAACGCGAAAATCAAA
1 TTCGCAACGCGAAAGTCAAA
*
5154305 TTCGCAACGCAAAAGTCAAA
1 TTCGCAACGCGAAAGTCAAA
**** *
5154325 TTCGTGTTGCGATAGTCAAA
1 TTCGCAACGCGAAAGTCAAA
5154345 TTCGCAACGCGAAAGTCAAA
1 TTCGCAACGCGAAAGTCAAA
5154365 TTCGC
1 TTCGC
5154370 GTTGCGATTT
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (20 bp):
TTCGCAACGCGAAAGTCAAA
Found at i:5154724 original size:18 final size:18
Alignment explanation
Indices: 5154701--5154739 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
5154691 GTGAAACCGG
5154701 TTTTGATTGAAATTTTGA
1 TTTTGATTGAAATTTTGA
**
5154719 TTTTGATTGCGATTTTGA
1 TTTTGATTGAAATTTTGA
5154737 TTT
1 TTT
5154740 CCTTTTGCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.03, G:0.18, T:0.59
Consensus pattern (18 bp):
TTTTGATTGAAATTTTGA
Found at i:5158054 original size:19 final size:19
Alignment explanation
Indices: 5158013--5158103 Score: 137
Period size: 19 Copynumber: 4.6 Consensus size: 19
5158003 TTAAATTCGT
* *
5158013 GTTGCGAATTCGAAAATCGA
1 GTTGCGAATTTGAAATTC-A
5158033 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
5158052 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
5158071 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
5158090 GTGTTGCGAATTTG
1 --GTTGCGAATTTG
5158104 GCAAACGTGT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
19 39 0.58
20 16 0.24
21 12 0.18
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (19 bp):
GTTGCGAATTTGAAATTCA
Found at i:5158079 original size:38 final size:40
Alignment explanation
Indices: 5158005--5158124 Score: 149
Period size: 38 Copynumber: 3.0 Consensus size: 40
5157995 TTAAGAAATT
*
5158005 AAATTC-GTGTTGCGAATTCGAAAATCGAGTTGCGAATTTG
1 AAATTCAG-GTTGCGAATTTGAAAATCGAGTTGCGAATTTG
*
5158045 AAATTCA-GTTGCGAATTTGAAATTC-AGTTGCGAATTTG
1 AAATTCAGGTTGCGAATTTGAAAATCGAGTTGCGAATTTG
* *
5158083 AAATTCAGTGTTGCGAATTTGGCAAA-CGTGTTGCGAATTTG
1 AAATTCAG-GTTGCGAATTT-GAAAATCGAGTTGCGAATTTG
5158124 A
1 A
5158125 CTTCTTTGTT
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
38 20 0.29
39 16 0.23
40 18 0.26
41 16 0.23
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (40 bp):
AAATTCAGGTTGCGAATTTGAAAATCGAGTTGCGAATTTG
Found at i:5160489 original size:27 final size:29
Alignment explanation
Indices: 5160459--5160518 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 29
5160449 TACTCTCTCA
5160459 CTATTGT-T-ACCACAGATACTTAAGTTG
1 CTATTGTCTCACCACAGATACTTAAGTTG
5160486 CTATTGTCCATCACCACAGATACTTAAGTTG
1 CTATTGT-C-TCACCACAGATACTTAAGTTG
5160517 CT
1 CT
5160519 CCTTGATCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 7 0.24
30 1 0.03
31 21 0.72
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (29 bp):
CTATTGTCTCACCACAGATACTTAAGTTG
Found at i:5161336 original size:43 final size:44
Alignment explanation
Indices: 5161286--5161637 Score: 350
Period size: 43 Copynumber: 8.2 Consensus size: 44
5161276 TGAGAACAAA
* * * *
5161286 AAACGCCGCAATAGGTCAATATCTATTA-CGGCGTTTTTTGA-AC
1 AAACGCCGCAAAAGGTCAAGACCTA-TAGCGGCGTTTTTGGATAC
* * * * * *
5161329 AAACGCCGCAAAATGTCGATATCTATAGTGGCGTTTTTGGA-AT
1 AAACGCCGCAAAAGGTCAAGACCTATAGCGGCGTTTTTGGATAC
* * * ** * * *
5161372 AAACGCCGCAAAAAGTTATGATATATAGCGGCGTTTCTAGA-AA
1 AAACGCCGCAAAAGGTCAAGACCTATAGCGGCGTTTTTGGATAC
*
5161415 AAACGCCGCAAAAGGTC-AGATCTATAGCGGCGTTTTTGGATAC
1 AAACGCCGCAAAAGGTCAAGACCTATAGCGGCGTTTTTGGATAC
*
5161458 AAACGCCGCAAAAGAG--AAGACCTATA-CTGGCGTTTTTAGA-AC
1 AAACGCCGCAAAAG-GTCAAGACCTATAGC-GGCGTTTTTGGATAC
* *
5161500 AAACGCCGCAAAAGGTTAA-ACCTATAGCGGCATTTTTGGATAC
1 AAACGCCGCAAAAGGTCAAGACCTATAGCGGCGTTTTTGGATAC
* * * *
5161543 AAACGCCGCAAAAGGT-TAGACCTATAACGGCGTTTTTGAACAC
1 AAACGCCGCAAAAGGTCAAGACCTATAGCGGCGTTTTTGGATAC
*
5161586 AAACGCCGCAAAAAGTC-AGACCTATAGCGGCGTTTTTGGATAC
1 AAACGCCGCAAAAGGTCAAGACCTATAGCGGCGTTTTTGGATAC
5161629 AAACGCCGC
1 AAACGCCGC
5161638 TAATTACCTT
Statistics
Matches: 262, Mismatches: 36, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.00
42 56 0.21
43 204 0.78
44 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (44 bp):
AAACGCCGCAAAAGGTCAAGACCTATAGCGGCGTTTTTGGATAC
Found at i:5161450 original size:128 final size:126
Alignment explanation
Indices: 5161283--5161637 Score: 394
Period size: 128 Copynumber: 2.8 Consensus size: 126
5161273 GTTTGAGAAC
* *
5161283 AAAAAACGCCGCAATAGGTCAATATCTATTACGGCGTTTTTTGA-ACAAACGCCGCAAAATGTCG
1 AAAAAACGCCGCAAAAGGTC-AGATCTA-TACGGCGTTTTTTGACACAAACGCCGCAAAA-GTCG
* * * * * *
5161347 ATATCTATAGTGGCGTTTTTGGAATAAACGCCGCAAAAAGTTATGATATATAGCGGCGTTTCTAG
63 AGACCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAAGTTA-AACATATAGCGGCATTTCTAG
* * *
5161412 AAAAAACGCCGCAAAAGGTCAGATCTATAGCGGCGTTTTTGGATACAAACGCCGCAAAAG-AGAA
1 AAAAAACGCCGCAAAAGGTCAGATCTATA-CGGCGTTTTTTGACACAAACGCCGCAAAAGTCG-A
* * * * * *
5161476 GACCTATACTGGCGTTTTTAGAACAAACGCCGCAAAAGGTTAAACCTATAGCGGCATTTTTGG
64 GACCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAAGTTAAACATATAGCGGCATTTCTAG
* * *
5161539 ATACAAACGCCGCAAAAGGTTAGACCTATAACGGCG-TTTTTGAACACAAACGCCGCAAAAAGTC
1 A-AAAAACGCCGCAAAAGGTCAGATCTAT-ACGGCGTTTTTTG-ACACAAACGCCGC-AAAAGTC
*
5161603 -AGACCTATAGCGGCGTTTTTGGATACAAACGCCGC
62 GAGACCTATAGTGGCGTTTTTGGA-ACAAACGCCGC
5161638 TAATTACCTT
Statistics
Matches: 192, Mismatches: 25, Indels: 18
0.82 0.11 0.08
Matches are distributed among these distances:
127 24 0.12
128 117 0.61
129 51 0.27
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (126 bp):
AAAAAACGCCGCAAAAGGTCAGATCTATACGGCGTTTTTTGACACAAACGCCGCAAAAGTCGAGA
CCTATAGTGGCGTTTTTGGAACAAACGCCGCAAAAAGTTAAACATATAGCGGCATTTCTAG
Found at i:5161492 original size:85 final size:85
Alignment explanation
Indices: 5161286--5161637 Score: 392
Period size: 85 Copynumber: 4.1 Consensus size: 85
5161276 TGAGAACAAA
* * * * * * *
5161286 AAACGCCGCAATAG-GTCAATATCTATTACGGCGTTTTTTGAACAAACGCCGCAAAATGTCGATA
1 AAACGCCGCAAAAGAGT-AAGACCTA-TACGGCGTTTTTAGAAAAAACGCCGCAAAAGGTC-AGA
* * *
5161350 TCTATAGTGGCGTTTTTGGA-AT
63 CCTATAGCGGCGTTTTTGGATAC
* ** * *
5161372 AAACGCCGCAAAA-AGTTATGATATATAGCGGCGTTTCTAGAAAAAACGCCGCAAAAGGTCAGAT
1 AAACGCCGCAAAAGAG-TAAGACCTATA-CGGCGTTTTTAGAAAAAACGCCGCAAAAGGTCAGAC
5161436 CTATAGCGGCGTTTTTGGATAC
64 CTATAGCGGCGTTTTTGGATAC
* * *
5161458 AAACGCCGCAAAAGAG-AAGACCTATACTGGCGTTTTTAGAACAAACGCCGCAAAAGGTTAAACC
1 AAACGCCGCAAAAGAGTAAGACCTATAC-GGCGTTTTTAGAAAAAACGCCGCAAAAGGTCAGACC
*
5161522 TATAGCGGCATTTTTGGATAC
65 TATAGCGGCGTTTTTGGATAC
* *
5161543 AAACGCCGCAAAAG-GTTAGACCTATAACGGCGTTTTT-GAACACAAACGCCGCAAAAAGTCAGA
1 AAACGCCGCAAAAGAGTAAGACCTAT-ACGGCGTTTTTAGAA-A-AAACGCCGCAAAAGGTCAGA
5161606 CCTATAGCGGCGTTTTTGGATAC
63 CCTATAGCGGCGTTTTTGGATAC
5161629 AAACGCCGC
1 AAACGCCGC
5161638 TAATTACCTT
Statistics
Matches: 230, Mismatches: 26, Indels: 20
0.83 0.09 0.07
Matches are distributed among these distances:
84 5 0.02
85 112 0.49
86 110 0.48
87 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (85 bp):
AAACGCCGCAAAAGAGTAAGACCTATACGGCGTTTTTAGAAAAAACGCCGCAAAAGGTCAGACCT
ATAGCGGCGTTTTTGGATAC
Found at i:5165979 original size:41 final size:41
Alignment explanation
Indices: 5165915--5166439 Score: 552
Period size: 41 Copynumber: 12.6 Consensus size: 41
5165905 TTGTAAACTT
* * * * *
5165915 GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGTATATA
1 GCGGCGTTTGTATA-A-AAACGCCACTAAAGTACGAGTCTTTA
*
5165958 GTGGCGTTT-TAATAAAAACGCCACTAAAGTACGAGTCTTTA
1 GCGGCGTTTGT-ATAAAAACGCCACTAAAGTACGAGTCTTTA
* * *
5165999 GCGGCGTTTGTATAAAAATGTCAATAAAGTACGAGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* *
5166040 GCGGCGTTTGTATAAAAATGCCACTAAATTACGAGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * * * * *
5166081 GCGACGTTTGTAAACACAAACGCCACTATAGTACAAGTGTATA
1 GCGGCGTTTGTATA-A-AAACGCCACTAAAGTACGAGTCTTTA
* * * * *
5166124 ACGGCGTTTGAATAAAAATGTCACTAAAGTACGCGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * *
5166165 GCGGAGTTTGTATAAAAATGCCACTAAAGTATGAGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* *
5166206 GCGGCGTTTGTATAAAAACGCCACTAAATTATGAGTCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * * *
5166247 GCGGCGTTTGTAAACACAAACGCCACTATAGTAC-ATGTGTATA
1 GCGGCGTTTGTATA-A-AAACGCCACTAAAGTACGA-GTCTTTA
* ** * *
5166290 ACGGCGTTTGTATAAAAACGCCACTAAAGTATAATTCTATA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * * *
5166331 GCGGCGTTTGTATAAAAATGCCACTAAATTACGTGTATTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
* * *
5166372 GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTTTT
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
5166413 GCGGCGTTTGT-TGAAAAAACGCCACTA
1 GCGGCGTTTGTAT--AAAAACGCCACTA
5166440 TCGATGAACC
Statistics
Matches: 403, Mismatches: 69, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
40 1 0.00
41 309 0.77
42 22 0.05
43 71 0.18
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (41 bp):
GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTTTA
Found at i:5166139 original size:125 final size:123
Alignment explanation
Indices: 5165962--5166423 Score: 408
Period size: 125 Copynumber: 3.7 Consensus size: 123
5165952 TATATAGTGG
* * * *
5165962 CGTTT-TAATAAAAACGCCACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGTCAATAA
1 CGTTTGTAA-AAAAACGCCACTAAAGTACAAGTCTATAACGGCGTTTGAATAAAAATGTCAATAA
* *
5166026 AGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGCCACTAAATTACGAGTCTTTAGCGA
65 AGTACGAGTCTTTAGCGGAGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGA
* * *
5166085 CGTTTGTAAACACAAACGCCACTATAGTACAAGTGTATAACGGCGTTTGAATAAAAATGTCACTA
1 CGTTTGTAAA-A-AAACGCCACTAAAGTACAAGTCTATAACGGCGTTTGAATAAAAATGTCAATA
* * *
5166150 AAGTACGCGTCTTTAGCGGAGTTTGTATAAAAATGCCACTAAAGTATGAGTCTTTAGCGG
64 AAGTACGAGTCTTTAGCGGAGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGA
* * ** * * * * *
5166210 CGTTTGTATAAAAACGCCACTAAATTATGAGTCTTTAGCGGCGTTTGTAA-ACACAAACGCCACT
1 CGTTTGTAAAAAAACGCCACTAAAGTACAAGTCTATAACGGCGTTTG-AATA-A-AAATGTCAAT
* * * * * * ** * * *
5166274 ATAGTAC-ATGTGTATAACGGCGTTTGTATAAAAACGCCACTAAAGTATAATTCTATAGCGG
63 AAAGTACGA-GTCTTTAGCGGAGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGA
* * * ** * * * * * * *
5166335 CGTTTGTATAAAAATGCCACTAAATTACGTGTATTTAGCGGCGTTTGTATAAAAACGCCACTAAA
1 CGTTTGTAAAAAAACGCCACTAAAGTACAAGTCTATAACGGCGTTTGAATAAAAATGTCAATAAA
* * * *
5166400 GTACTACTCTTTTGCGGCGTTTGT
66 GTACGAGTCTTTAGCGGAGTTTGT
5166424 TGAAAAAACG
Statistics
Matches: 287, Mismatches: 43, Indels: 18
0.82 0.12 0.05
Matches are distributed among these distances:
123 65 0.23
124 11 0.04
125 211 0.74
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (123 bp):
CGTTTGTAAAAAAACGCCACTAAAGTACAAGTCTATAACGGCGTTTGAATAAAAATGTCAATAAA
GTACGAGTCTTTAGCGGAGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGA
Found at i:5166195 original size:166 final size:166
Alignment explanation
Indices: 5165915--5166440 Score: 777
Period size: 166 Copynumber: 3.2 Consensus size: 166
5165905 TTGTAAACTT
* ** *
5165915 GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGTATATAGTGGCGTTTTAATAAAAACGCC
1 GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGTGTATAACGGCGTTTGAATAAAAACGCC
* *
5165980 ACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGTCAATAAAGTACGAGTCTTTAGCGGC
66 ACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGGC
*
5166045 GTTTGTATAAAAATGCCACTAAATTACGAGTCTTTA
131 GTTTGTATAAAAACGCCACTAAATTACGAGTCTTTA
* * *
5166081 GCGACGTTTGTAAACACAAACGCCACTATAGTACAAGTGTATAACGGCGTTTGAATAAAAATGTC
1 GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGTGTATAACGGCGTTTGAATAAAAACGCC
* * *
5166146 ACTAAAGTACGCGTCTTTAGCGGAGTTTGTATAAAAATGCCACTAAAGTATGAGTCTTTAGCGGC
66 ACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGGC
*
5166211 GTTTGTATAAAAACGCCACTAAATTATGAGTCTTTA
131 GTTTGTATAAAAACGCCACTAAATTACGAGTCTTTA
* *
5166247 GCGGCGTTTGTAAACACAAACGCCACTATAGTACATGTGTATAACGGCGTTTGTATAAAAACGCC
1 GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGTGTATAACGGCGTTTGAATAAAAACGCC
** * * * * *
5166312 ACTAAAGTATAATTCTATAGCGGCGTTTGTATAAAAATGCCACTAAATTACGTGTATTTAGCGGC
66 ACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGGC
* * * *
5166377 GTTTGTATAAAAACGCCACTAAAGTACTACTCTTTT
131 GTTTGTATAAAAACGCCACTAAATTACGAGTCTTTA
*
5166413 GCGGCGTTTGTTGAA-A-AAACGCCACTAT
1 GCGGCGTTTG-TAAACACAAACGCCACTAT
5166441 CGATGAACCT
Statistics
Matches: 324, Mismatches: 35, Indels: 3
0.90 0.10 0.01
Matches are distributed among these distances:
165 12 0.04
166 309 0.95
167 3 0.01
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (166 bp):
GCGGCGTTTGTAAACACAAACGCCACTATAGTACAAGTGTATAACGGCGTTTGAATAAAAACGCC
ACTAAAGTACGAGTCTTTAGCGGCGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGGC
GTTTGTATAAAAACGCCACTAAATTACGAGTCTTTA
Found at i:5167259 original size:103 final size:106
Alignment explanation
Indices: 5167113--5167360 Score: 284
Period size: 103 Copynumber: 2.4 Consensus size: 106
5167103 AGATGTACAT
* * *
5167113 ACTTACATCAGTGTAAATATGTGTTAAGTGTTACACTTTTTTATTTTATTTA-TT-TACATGTGT
1 ACTTACATCAGTGTAAATATGTGTTAAGTGTTACACTTGTTTATTTTATTCACTTACACATGTGT
5167176 AAGTATATGTTAAATGTTACAATT-TTTATTTTATTTTATTC
66 -AGTATATGTTAAATGTTACAATTGTTTATTTTATTTTATTC
* *
5167217 ACTTACA-CATGTGT-AGTATGTGTTAAGTGTTATACTTGTTTATTTTATTCACTTACACATGTG
1 ACTTACATCA-GTGTAAATATGTGTTAAGTGTTACACTTGTTTATTTTATTCACTTACACATGTG
* * * *
5167280 TAGTATGTGTTAAGTGTTATACTTG-----TTTATTTTATTC
65 TAGTATATGTTAAATGTTACAATTGTTTATTTTATTTTATTC
* * * *
5167317 ACTTACACCGGTGTAAATATGTATTAAGTGTTACA-TTTTTTATT
1 ACTTACATCAGTGTAAATATGTGTTAAGTGTTACACTTGTTTATT
5167361 GTATGAATTA
Statistics
Matches: 124, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
100 31 0.25
101 18 0.15
103 35 0.28
104 32 0.26
105 8 0.06
ACGTcount: A:0.27, C:0.09, G:0.13, T:0.50
Consensus pattern (106 bp):
ACTTACATCAGTGTAAATATGTGTTAAGTGTTACACTTGTTTATTTTATTCACTTACACATGTGT
AGTATATGTTAAATGTTACAATTGTTTATTTTATTTTATTC
Found at i:5167359 original size:50 final size:51
Alignment explanation
Indices: 5167113--5167360 Score: 283
Period size: 50 Copynumber: 4.9 Consensus size: 51
5167103 AGATGTACAT
* *
5167113 ACTTACATCA-GTGTAAATATGTGTTAAGTGTTACACTTTTTTATTTTATTT
1 ACTTACA-CATGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATTTTATTC
* * * *
5167164 A-TT-TACATGTGTAAGTATATGTTAAATGTTACAATTTTTATTTTATTTTATTC
1 ACTTACACATGTGTAAGTATGTGTTAAGTGTTAC-A--CTT-TTTTATTTTATTC
* *
5167217 ACTTACACATGTGT-AGTATGTGTTAAGTGTTATACTTGTTTATTTTATTC
1 ACTTACACATGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATTTTATTC
* *
5167267 ACTTACACATGTGT-AGTATGTGTTAAGTGTTATACTTGTTTATTTTATTC
1 ACTTACACATGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATTTTATTC
** * *
5167317 ACTTACACCGGTGTAAATATGTATTAAGTGTTACA-TTTTTTATT
1 ACTTACACATGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATT
5167361 GTATGAATTA
Statistics
Matches: 171, Mismatches: 18, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
48 2 0.01
49 22 0.13
50 85 0.50
51 20 0.12
52 2 0.01
53 14 0.08
54 18 0.11
55 8 0.05
ACGTcount: A:0.27, C:0.09, G:0.13, T:0.50
Consensus pattern (51 bp):
ACTTACACATGTGTAAGTATGTGTTAAGTGTTACACTTTTTTATTTTATTC
Found at i:5168109 original size:40 final size:40
Alignment explanation
Indices: 5168065--5168168 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
5168055 AACTCTAATT
*
5168065 TCGCAACACAGGTTCCAAAATCGCAAAGCGAATTTATAAA
1 TCGCAACACAGTTTCCAAAATCGCAAAGCGAATTTATAAA
* * * *
5168105 TCGCAACACAATTTCCAAAATCGCGACGCGAATTTGTAAA
1 TCGCAACACAGTTTCCAAAATCGCAAAGCGAATTTATAAA
*
5168145 TCGAAACACAGTTTCCAAAATCGC
1 TCGCAACACAGTTTCCAAAATCGC
5168169 GTTGCAATAG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.21
Consensus pattern (40 bp):
TCGCAACACAGTTTCCAAAATCGCAAAGCGAATTTATAAA
Found at i:5168125 original size:20 final size:20
Alignment explanation
Indices: 5168065--5168168 Score: 72
Period size: 20 Copynumber: 5.2 Consensus size: 20
5168055 AACTCTAATT
**
5168065 TCGCAACACAGGTTCCAAAA
1 TCGCAACACAATTTCCAAAA
5168085 TCGCAA-AGCGAATTT--ATAAA
1 TCGCAACA-C-AATTTCCA-AAA
5168105 TCGCAACACAATTTCCAAAA
1 TCGCAACACAATTTCCAAAA
* * **
5168125 TCGCGACGCGAATTT-GTAAA
1 TCGCAACAC-AATTTCCAAAA
* *
5168145 TCGAAACACAGTTTCCAAAA
1 TCGCAACACAATTTCCAAAA
5168165 TCGC
1 TCGC
5168169 GTTGCAATAG
Statistics
Matches: 63, Mismatches: 13, Indels: 16
0.68 0.14 0.17
Matches are distributed among these distances:
19 11 0.17
20 42 0.67
21 10 0.16
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.21
Consensus pattern (20 bp):
TCGCAACACAATTTCCAAAA
Found at i:5168292 original size:20 final size:20
Alignment explanation
Indices: 5168264--5168319 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
5168254 GTAATTAGCA
*
5168264 TTGCGAATTTGAAAATCTAG
1 TTGCGAATTTGAAAATCGAG
* *
5168284 TTGCAAATTTGAAAATCGCG
1 TTGCGAATTTGAAAATCGAG
*
5168304 TTGCGAATTTAAAAAT
1 TTGCGAATTTGAAAAT
5168320 GGTGTTGCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
TTGCGAATTTGAAAATCGAG
Found at i:5168326 original size:20 final size:19
Alignment explanation
Indices: 5168264--5168327 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
5168254 GTAATTAGCA
*
5168264 TTGCGAATTTGAAAATCTAG
1 TTGCGAATTTGAAAATGT-G
* *
5168284 TTGCAAATTTGAAAATCGCG
1 TTGCGAATTTGAAAAT-GTG
*
5168304 TTGCGAATTTAAAAATGGTG
1 TTGCGAATTTGAAAAT-GTG
5168324 TTGC
1 TTGC
5168328 AATAGTATTG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (19 bp):
TTGCGAATTTGAAAATGTG
Found at i:5168459 original size:57 final size:57
Alignment explanation
Indices: 5168303--5168492 Score: 236
Period size: 57 Copynumber: 3.3 Consensus size: 57
5168293 TGAAAATCGC
* * * *
5168303 GTTGCGAATTTAAAAATGGTGTTGCAATAGTATTGTTTACCTACATCGGTAATTAGT
1 GTTGCGAATTTGAAAATCGCGTTGCAATAGTATTGTTTACCTATATCGGTAATTAGT
** * ** * * *
5168360 GTTGCGTTTTTGGAAAATCGCGTTGCGATAACACTGTTTACCTATATCGATAATTAAT
1 GTTGCGAATTT-GAAAATCGCGTTGCAATAGTATTGTTTACCTATATCGGTAATTAGT
* * *
5168418 TTTGCGAATTTGTAAATCGCGTTGCAATAGTATTGTTTACCTATATCGGTAATTAGC
1 GTTGCGAATTTGAAAATCGCGTTGCAATAGTATTGTTTACCTATATCGGTAATTAGT
5168475 GTTGCGAATTTGAAAATC
1 GTTGCGAATTTGAAAATC
5168493 TCGTCGCGAA
Statistics
Matches: 107, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
57 63 0.59
58 44 0.41
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.38
Consensus pattern (57 bp):
GTTGCGAATTTGAAAATCGCGTTGCAATAGTATTGTTTACCTATATCGGTAATTAGT
Found at i:5168548 original size:77 final size:77
Alignment explanation
Indices: 5168419--5168657 Score: 352
Period size: 77 Copynumber: 3.1 Consensus size: 77
5168409 ATAATTAATT
* *
5168419 TTGCGAATTTGTAAATCGCGTTGCAATAGTATTGTTTACCTATATCGGTAATTAGCGTTGCGAAT
1 TTGCGAATTTGTAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAAT
5168484 TTGAAAATCTCG
66 TTGAAAATCTCG
* * * *
5168496 TCGCGAATTTGTAAATCGAGTTGTGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGTGAAT
1 TTGCGAATTTGTAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAAT
* *
5168561 TTGAAAATATTTGG
66 TTG-AAA-ATCTCG
* *
5168575 TTGTGAATTTGTAAATCGCGTTGCGATAGTACTATTTACCTATATCGGTAATTAGCGTTGCGAAT
1 TTGCGAATTTGTAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAAT
* *
5168640 TTGTAAATCACG
66 TTGAAAATCTCG
5168652 TTGCGA
1 TTGCGA
5168658 TAAAACTGTT
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
77 70 0.50
78 5 0.04
79 66 0.47
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (77 bp):
TTGCGAATTTGTAAATCGCGTTGCGATAGTACTGTTTACCTATATCGGTAATTAGCGTTGCGAAT
TTGAAAATCTCG
Done.