Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5892847
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 27
Found at i:1649639 original size:6 final size:6
Alignment explanation
Indices: 1649628--1649654 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
1649618 TTTTATAACA
1649628 AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAA
1649655 TTCATCACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:1652662 original size:6 final size:6
Alignment explanation
Indices: 1652646--1652675 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
1652636 CAAGATATTG
*
1652646 GAAAAA AAAAAA GAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
1652676 CACTAACTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:1653771 original size:25 final size:25
Alignment explanation
Indices: 1653735--1653804 Score: 133
Period size: 25 Copynumber: 2.8 Consensus size: 25
1653725 TATTATTAAC
1653735 TAAT-TAAAAATATTAAATTTAATT
1 TAATATAAAAATATTAAATTTAATT
1653759 TAATATAAAAATATTAAATTTAATT
1 TAATATAAAAATATTAAATTTAATT
1653784 TAATATAAAAATATTAAATTT
1 TAATATAAAAATATTAAATTT
1653805 GTTTTTATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 4 0.09
25 41 0.91
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATATAAAAATATTAAATTTAATT
Found at i:1655058 original size:31 final size:31
Alignment explanation
Indices: 1655020--1655093 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
1655010 TTAATGAGTA
* *
1655020 ACGAGTCGAGCAACAAATTTTCTTAATGAAC
1 ACGAGTCGAACAACAAATTTTCTTAACGAAC
* * * *
1655051 ACGAGTCGAACAATAATTTTTTTTAACGAGC
1 ACGAGTCGAACAACAAATTTTCTTAACGAAC
*
1655082 ACGAGTCTAACA
1 ACGAGTCGAACA
1655094 CTGCCCAACT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (31 bp):
ACGAGTCGAACAACAAATTTTCTTAACGAAC
Found at i:1657276 original size:16 final size:15
Alignment explanation
Indices: 1657255--1657284 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1657245 GATTTTATGG
1657255 AATTTTGGGTATTTGA
1 AATTTTGGGT-TTTGA
1657271 AATTTTGGGTTTTG
1 AATTTTGGGTTTTG
1657285 TTTTTGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (15 bp):
AATTTTGGGTTTTGA
Found at i:1668815 original size:21 final size:21
Alignment explanation
Indices: 1668772--1668865 Score: 145
Period size: 21 Copynumber: 4.5 Consensus size: 21
1668762 TTTTCTCAAT
** *
1668772 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTGGAAAA
1668792 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
1668813 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
1668834 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
*
1668855 TCGCAACGCGA
1 TCGCAATGCGA
1668866 TACTGACTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
20 12 0.17
21 57 0.83
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGAAAA
Found at i:1668879 original size:20 final size:20
Alignment explanation
Indices: 1668855--1668947 Score: 123
Period size: 20 Copynumber: 4.7 Consensus size: 20
1668845 ATTTGGAAAA
*
1668855 TCGCAACGCGATACTGACTA
1 TCGCAACGCGATACTGACTT
1668875 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
* * *
1668895 TCGCAACTCGATACTTAATT
1 TCGCAACGCGATACTGACTT
* *
1668915 TCGCAACACAATACTGACTT
1 TCGCAACGCGATACTGACTT
*
1668935 TCGCAACGAGATA
1 TCGCAACGCGATA
1668948 ATACATAATC
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:1669162 original size:22 final size:22
Alignment explanation
Indices: 1669134--1669177 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1669124 CACTCTCTCA
*
1669134 CCCATCTCCGACGAAATTCGTC
1 CCCATCTCCGACGAAATCCGTC
* *
1669156 CCCATCTCTGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
1669178 TATCTCCATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.20, C:0.41, G:0.16, T:0.23
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:1669489 original size:20 final size:20
Alignment explanation
Indices: 1669440--1669498 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
1669430 TTTATTCTCT
* **
1669440 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
1669460 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* *
1669480 TGTTGCGATTTTCATTTTC
1 CGTTGCGATTGTCATTTTC
1669499 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:1670838 original size:18 final size:18
Alignment explanation
Indices: 1670817--1670864 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
1670807 TCCACTTCGG
1670817 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
1670835 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
1670853 GAGCCATCACCT
1 GAGCCATCACCT
1670865 GATCGACCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.46, G:0.12, T:0.15
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:1671459 original size:19 final size:20
Alignment explanation
Indices: 1671416--1671471 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
1671406 CACAACACGA
*
1671416 AAATGACTATTGCAACGCGG
1 AAATGACTATCGCAACGCGG
* *
1671436 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAACGCGG
**
1671455 AAATGAAAATCGCAACG
1 AAATGACTATCGCAACG
1671472 ATAAAATCGC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGG
Found at i:1671488 original size:19 final size:19
Alignment explanation
Indices: 1671444--1671505 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
1671434 GGAAATGGCT
*
1671444 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCAAAATGAAA
*
1671463 ATCGCAA--C--GAT-AAA
1 ATCGCAATGCAAAATGAAA
1671477 ATCGCAATGCAAAATGAAA
1 ATCGCAATGCAAAATGAAA
1671496 ATCGCAATGC
1 ATCGCAATGC
1671506 GATTTGTGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 10 0.28
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 20 0.56
ACGTcount: A:0.47, C:0.19, G:0.18, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCAAAATGAAA
Found at i:1671539 original size:14 final size:14
Alignment explanation
Indices: 1671520--1671577 Score: 62
Period size: 14 Copynumber: 3.8 Consensus size: 14
1671510 TGTGTTTCGT
1671520 GTTGCGATTTTTTC
1 GTTGCGATTTTTTC
1671534 GTTGCGATTTTCATTTC
1 GTTGCGA-TTT--TTTC
*
1671551 GCATTGCGATTTTGTC
1 G--TTGCGATTTTTTC
1671567 GTTGCGATTTT
1 GTTGCGATTTT
1671578 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
14 17 0.45
15 3 0.08
16 4 0.11
17 5 0.13
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.16, G:0.22, T:0.52
Consensus pattern (14 bp):
GTTGCGATTTTTTC
Found at i:1671551 original size:33 final size:33
Alignment explanation
Indices: 1671521--1671593 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
1671511 GTGTTTCGTG
*
1671521 TTGCGATTTTTTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
1671554 TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
1671587 TTGCGAT
1 TTGCGAT
1671594 AGCCATTTCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.12, C:0.18, G:0.21, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTGTCGTTGCGATTTTCATTTCGCA
Found at i:1671612 original size:20 final size:20
Alignment explanation
Indices: 1671577--1671652 Score: 109
Period size: 20 Copynumber: 3.9 Consensus size: 20
1671567 GTTGCGATTT
1671577 TCATTT-CGCATTGCGATAG
1 TCATTTCCGCATTGCGATAG
* *
1671596 CCATTTCCGCTTTGCGATAG
1 TCATTTCCGCATTGCGATAG
1671616 TCATTTCCGCATTGCGATAG
1 TCATTTCCGCATTGCGATAG
* *
1671636 TCATTTTCGCGTTGCGA
1 TCATTTCCGCATTGCGA
1671653 AAGTAAGTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
19 5 0.10
20 45 0.90
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (20 bp):
TCATTTCCGCATTGCGATAG
Found at i:1671622 original size:39 final size:40
Alignment explanation
Indices: 1671566--1671652 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
1671556 GCGATTTTGT
**
1671566 CGTTGCGATTTTCATTT-CGCATTGCGATAGCCATTTCCG
1 CGTTGCGATAGTCATTTCCGCATTGCGATAGCCATTTCCG
* * *
1671605 CTTTGCGATAGTCATTTCCGCATTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTCCGCATTGCGATAGCCATTTCCG
1671645 CGTTGCGA
1 CGTTGCGA
1671653 AAGTAAGTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
39 14 0.34
40 27 0.66
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (40 bp):
CGTTGCGATAGTCATTTCCGCATTGCGATAGCCATTTCCG
Found at i:1671663 original size:20 final size:20
Alignment explanation
Indices: 1671640--1671678 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1671630 CGATAGTCAT
1671640 TTTCGCGTTGCGAAAGTAAG
1 TTTCGCGTTGCGAAAGTAAG
*
1671660 TTTCGTGTTGCGAAAGTAA
1 TTTCGCGTTGCGAAAGTAA
1671679 ACTATTATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (20 bp):
TTTCGCGTTGCGAAAGTAAG
Found at i:1671672 original size:40 final size:40
Alignment explanation
Indices: 1671579--1671663 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
1671569 TGCGATTTTC
* * *
1671579 ATTT-CGCATTGCGATAGCCATTTCCGCTTTGCGATAGTC
1 ATTTCCGCATTGCGATAGCCATTTCCGCGTTGCGAAAGTA
* *
1671618 ATTTCCGCATTGCGATAGTCATTTTCGCGTTGCGAAAGTA
1 ATTTCCGCATTGCGATAGCCATTTCCGCGTTGCGAAAGTA
1671658 AGTTTC
1 A-TTTC
1671664 GTGTTGCGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.10
40 31 0.79
41 4 0.10
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (40 bp):
ATTTCCGCATTGCGATAGCCATTTCCGCGTTGCGAAAGTA
Found at i:1672054 original size:21 final size:21
Alignment explanation
Indices: 1672022--1672081 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
1672012 ACTCACCTGT
1672022 CATCCCTCAAGAGTCCCCT-C
1 CATCCCTCAAGAGTCCCCTAC
** *
1672042 CAATCGTTCAAGAGGCCCCTAC
1 C-ATCCCTCAAGAGTCCCCTAC
1672064 CATCCCTCAAGAGTCCCC
1 CATCCCTCAAGAGTCCCC
1672082 CCCACCATTC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
20 1 0.03
21 29 0.91
22 2 0.06
ACGTcount: A:0.23, C:0.45, G:0.13, T:0.18
Consensus pattern (21 bp):
CATCCCTCAAGAGTCCCCTAC
Found at i:1672088 original size:23 final size:23
Alignment explanation
Indices: 1672022--1672089 Score: 63
Period size: 21 Copynumber: 3.1 Consensus size: 23
1672012 ACTCACCTGT
*
1672022 CATCCCTCAAGAGTCCCCTCCA-
1 CATCCCTCAAGAGTCCCCCCCAC
** * *
1672044 -ATCGTTCAAGAG--GCCCCTAC
1 CATCCCTCAAGAGTCCCCCCCAC
1672064 CATCCCTCAAGAGTCCCCCCCAC
1 CATCCCTCAAGAGTCCCCCCCAC
1672087 CAT
1 CAT
1672090 TCAAGAGGCC
Statistics
Matches: 33, Mismatches: 9, Indels: 7
0.67 0.18 0.14
Matches are distributed among these distances:
19 4 0.12
21 20 0.61
23 9 0.27
ACGTcount: A:0.24, C:0.47, G:0.12, T:0.18
Consensus pattern (23 bp):
CATCCCTCAAGAGTCCCCCCCAC
Found at i:1673542 original size:14 final size:14
Alignment explanation
Indices: 1673508--1673546 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1673498 TTGATTGTTT
1673508 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
1673522 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
1673536 TGTTGATTTGT
1 AATTGATTTGT
1673547 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:1673692 original size:14 final size:14
Alignment explanation
Indices: 1673673--1673726 Score: 63
Period size: 14 Copynumber: 3.5 Consensus size: 14
1673663 GAAACAGACT
1673673 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
1673687 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
1673706 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
1673720 ATCGCAA
1 ATCGCAA
1673727 TGCGATTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 18 0.51
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 11 0.31
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:1673775 original size:20 final size:20
Alignment explanation
Indices: 1673758--1673805 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
1673748 CGATTTTCTA
1673758 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
*
1673778 GTTGCAATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
1673798 GTTGCGAT
1 GTTGCGAT
1673806 TTCCCCGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (20 bp):
GTTGCGATAGCCATTTTCGC
Found at i:1674044 original size:20 final size:20
Alignment explanation
Indices: 1674028--1674085 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
1674018 ATTGCGATTT
1674028 TCAGAATCTCGTTGCGAAAG
1 TCAGAATCTCGTTGCGAAAG
1674048 TCAGAATCTCGTTGCGAAAG
1 TCAGAATCTCGTTGCGAAAG
*
1674068 TCAGAATCGCGTTGCGAA
1 TCAGAATCTCGTTGCGAA
1674086 GCGATTTTCC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (20 bp):
TCAGAATCTCGTTGCGAAAG
Found at i:1674967 original size:24 final size:24
Alignment explanation
Indices: 1674910--1674969 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
1674900 TAGTCAGTAT
*
1674910 TCGAAATTTGATCTTGGTCAATAC
1 TCGAAATTTGATATTGGTCAATAC
* * *
1674934 CCGGACTTTGATATTGGTCAATAC
1 TCGAAATTTGATATTGGTCAATAC
*
1674958 TCGAATTTTGAT
1 TCGAAATTTGAT
1674970 GATTTTTCAG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (24 bp):
TCGAAATTTGATATTGGTCAATAC
Found at i:1677366 original size:19 final size:19
Alignment explanation
Indices: 1677344--1677431 Score: 88
Period size: 19 Copynumber: 5.2 Consensus size: 19
1677334 GGAAATTACT
1677344 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1677363 ATCGCAA--CG--A-GATA
1 ATCGCAATGCGAAATGAAA
1677377 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
1677396 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
1677410 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
1677429 ATC
1 ATC
1677432 AAAACGAGGG
Statistics
Matches: 55, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
14 20 0.36
15 2 0.04
16 4 0.07
17 4 0.07
18 2 0.04
19 23 0.42
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:1677381 original size:14 final size:14
Alignment explanation
Indices: 1677359--1677416 Score: 53
Period size: 14 Copynumber: 3.8 Consensus size: 14
1677349 AATGCGAAAT
1677359 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
1677373 GATAATCGCAATGCGAAA
1 GAAAATCGCAA--CG--A
1677391 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
*
1677406 GAGAATCGCAA
1 GAAAATCGCAA
1677417 TGCGAAATGA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:1677386 original size:33 final size:33
Alignment explanation
Indices: 1677344--1677470 Score: 209
Period size: 33 Copynumber: 3.8 Consensus size: 33
1677334 GGAAATTACT
*
1677344 ATCGCAATGCGAAATGAAAATCGCAACGAGATA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1677377 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
** *
1677410 ATCGCAATGCGAAATGAAAATCAAAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
1677443 ATCGCAAAGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
1677471 CGAATTTAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 87 1.00
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1677524 original size:33 final size:33
Alignment explanation
Indices: 1677480--1677592 Score: 163
Period size: 33 Copynumber: 3.4 Consensus size: 33
1677470 GCGAATTTAG
* * * *
1677480 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTTA
1 TTTCGCATTGCGATTATCTCGTTGCGATTTTCA
* * *
1677513 TTTCGCATTGCGATTCTCTAGTTACGATTTTCA
1 TTTCGCATTGCGATTATCTCGTTGCGATTTTCA
1677546 TTTCGCATTGCGATTATCTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTATCTCGTTGCGATTTTCA
1677579 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
1677593 AGTAATTTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 71 1.00
ACGTcount: A:0.14, C:0.19, G:0.19, T:0.47
Consensus pattern (33 bp):
TTTCGCATTGCGATTATCTCGTTGCGATTTTCA
Found at i:1677591 original size:19 final size:19
Alignment explanation
Indices: 1677501--1677592 Score: 69
Period size: 19 Copynumber: 5.4 Consensus size: 19
1677491 GATTTTGTCG
*
1677501 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTCATTTCGCA
* *
1677520 TTGCGA--TTC-TCTAG--
1 TTGCGATTTTCATTTCGCA
*
1677534 TTACGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
1677553 TTGCGA--TT-ATCTCG--
1 TTGCGATTTTCATTTCGCA
1677567 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
1677586 TTGCGAT
1 TTGCGAT
1677593 AGTAATTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 20
0.65 0.11 0.24
Matches are distributed among these distances:
14 11 0.20
16 13 0.24
17 12 0.22
19 18 0.33
ACGTcount: A:0.16, C:0.20, G:0.17, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:1677718 original size:14 final size:15
Alignment explanation
Indices: 1677699--1677735 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
1677689 CATCAATTAA
1677699 ACAAATCAAC-TTTT
1 ACAAATCAACATTTT
1677713 ACAAATC-ACATTTT
1 ACAAATCAACATTTT
1677727 ACAAATCAA
1 ACAAATCAA
1677736 TTAAACAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 18 0.86
15 1 0.05
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (15 bp):
ACAAATCAACATTTT
Found at i:1679598 original size:91 final size:90
Alignment explanation
Indices: 1679422--1679606 Score: 266
Period size: 91 Copynumber: 2.0 Consensus size: 90
1679412 ATTTCAAACT
* *
1679422 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGT
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGC
1679487 ATAATTGGCAGCAACCGAATAAATTTAC
63 ATAATTGGCAGCAACCGAATAAATTTAC
* *
1679515 TTCAACCAAAAGACAAAACAAAAAGACAAATACTTACTTCACATTGTT-AATAAACAGTTTAGCA
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
1679579 GT-ATTGGCAGCAACCGAATAAATTTAC
64 -TAATTGGCAGCAACCGAATAAATTTAC
1679606 T
1 T
1679607 AAGCAATCTA
Statistics
Matches: 85, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
91 40 0.47
92 1 0.01
93 19 0.22
95 25 0.29
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.24
Consensus pattern (90 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCATA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:1681344 original size:20 final size:21
Alignment explanation
Indices: 1681299--1681355 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
1681289 TCTTTTGGTT
1681299 GAAATGAAAATCGC-A-ACGA
1 GAAATGAAAATCGCAACACGA
1681318 GATAATGAAAATCGCAACACG-
1 GA-AATGAAAATCGCAACACGA
**
1681339 GAAATGACTATCGCAAC
1 GAAATGAAAATCGCAAC
1681356 GAGAGAATCG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 2 0.06
20 25 0.76
21 3 0.09
22 3 0.09
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.14
Consensus pattern (21 bp):
GAAATGAAAATCGCAACACGA
Found at i:1681367 original size:14 final size:14
Alignment explanation
Indices: 1681348--1681403 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
1681338 GGAAATGACT
1681348 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
1681362 ATCGCAACGCGAAATGA
1 ATCGCAA--CGAGA-GA
1681379 CTATCGCAACGAGAGA
1 --ATCGCAACGAGAGA
1681395 ATCGCAACG
1 ATCGCAACG
1681404 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 16 0.46
16 6 0.17
17 6 0.17
19 7 0.20
ACGTcount: A:0.39, C:0.25, G:0.25, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:1681380 original size:33 final size:33
Alignment explanation
Indices: 1681327--1681420 Score: 152
Period size: 33 Copynumber: 2.8 Consensus size: 33
1681317 AGATAATGAA
*
1681327 AATCGCAACACGGAAATGACTATCGCAACGAGAG
1 AATCGCAACGC-GAAATGACTATCGCAACGAGAG
1681361 AATCGCAACGCGAAATGACTATCGCAACGAGAG
1 AATCGCAACGCGAAATGACTATCGCAACGAGAG
**
1681394 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGACTATCGCAA
1681421 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 47 0.82
34 10 0.18
ACGTcount: A:0.43, C:0.23, G:0.22, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGACTATCGCAACGAGAG
Found at i:1681386 original size:19 final size:17
Alignment explanation
Indices: 1681307--1681412 Score: 62
Period size: 20 Copynumber: 6.1 Consensus size: 17
1681297 TTGAAATGAA
*
1681307 AATCGCAACGAGATAATG
1 AATCGCAACGCGA-AATG
*
1681325 AAAATCGCAACACGGAAATG
1 --AATCGCAACGC-GAAATG
*
1681345 ACTATCGCAA--CGAGA-G
1 A--ATCGCAACGCGAAATG
1681361 AATCGCAACGCGAAATG
1 AATCGCAACGCGAAATG
*
1681378 ACTATCGCAA--CGAGA-G
1 A--ATCGCAACGCGAAATG
1681394 AATCGCAACGCGAAATG
1 AATCGCAACGCGAAATG
1681411 AA
1 AA
1681413 AATCGCAATG
Statistics
Matches: 69, Mismatches: 6, Indels: 25
0.69 0.06 0.25
Matches are distributed among these distances:
14 14 0.20
16 12 0.17
17 12 0.17
18 2 0.03
19 7 0.10
20 20 0.29
21 2 0.03
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.12
Consensus pattern (17 bp):
AATCGCAACGCGAAATG
Found at i:1681475 original size:19 final size:20
Alignment explanation
Indices: 1681451--1681505 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
1681441 GCGATTATCT
1681451 CGTTGCGATTTTCATTT-CG
1 CGTTGCGATTTTCATTTCCG
*
1681470 CGTTGCGATAGTT-ATTTCCG
1 CGTTGCGAT-TTTCATTTCCG
1681490 CGTTGCGATTTTCATT
1 CGTTGCGATTTTCATT
1681506 CTCGAAACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.45
Consensus pattern (20 bp):
CGTTGCGATTTTCATTTCCG
Found at i:1681785 original size:27 final size:27
Alignment explanation
Indices: 1681755--1681829 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 27
1681745 TTTCCATTTC
1681755 TGAATGATTGTGAGGGATTTCTGACCG
1 TGAATGATTGTGAGGGATTTCTGACCG
*
1681782 TGAATGGTTGTGAGGGATTTCTGACCG
1 TGAATGATTGTGAGGGATTTCTGACCG
1681809 TGAAT-AGTTGTGAGGGATTTC
1 TGAATGA-TTGTGAGGGATTTC
1681830 GCCGGCGATA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.21, C:0.09, G:0.35, T:0.35
Consensus pattern (27 bp):
TGAATGATTGTGAGGGATTTCTGACCG
Found at i:1682065 original size:20 final size:20
Alignment explanation
Indices: 1682040--1682191 Score: 223
Period size: 20 Copynumber: 7.5 Consensus size: 20
1682030 GCTATGTAAA
*
1682040 TCGCATTACGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
1682060 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
1682080 TCGCATTGTGATTTATGTAT
1 TCGCATTGCGATTTACGTAT
1682100 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
1682120 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGT-AT
* *
1682141 TCGCATTGCGATTTACTTAA
1 TCGCATTGCGATTTACGTAT
*
1682161 TCGCGTTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
1682181 TCGCATTGCGA
1 TCGCATTGCGA
1682192 ATTATGAAAA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
20 99 0.85
21 18 0.15
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAT
Found at i:1682154 original size:61 final size:60
Alignment explanation
Indices: 1682038--1682191 Score: 229
Period size: 61 Copynumber: 2.5 Consensus size: 60
1682028 GCGCTATGTA
* * *
1682038 AATCGCATTACGATTTACGTATTCGCATTGCGATTTACGTATTCGCATTGTGATTTA-TGT
1 AATCGCATTGCGATTTACGTATTCGCATTGCGATTTACCTATTCGCATTGCGATTTACT-T
* *
1682098 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACTT
1 AATCGCATTGCGATTTACGTATTCGCATTGCGATTTACCT-ATTCGCATTGCGATTTACTT
*
1682159 AATCGCGTTGCGATTTACGTATTCGCATTGCGA
1 AATCGCATTGCGATTTACGTATTCGCATTGCGA
1682192 ATTATGAAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
60 36 0.42
61 48 0.56
62 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (60 bp):
AATCGCATTGCGATTTACGTATTCGCATTGCGATTTACCTATTCGCATTGCGATTTACTT
Found at i:1682204 original size:41 final size:40
Alignment explanation
Indices: 1682032--1682317 Score: 195
Period size: 41 Copynumber: 7.0 Consensus size: 40
1682022 CAAATGGCGC
* *
1682032 TATGTAAATCGCATTACGATTTACGTATTCGCATTGCGATT
1 TATG-AAATCGCATTGCGATTTACGTATTCGCATTGCGAAT
* * * * * *
1682073 TACGTATTCGCATTGTGATTTATGTATTCGCATTGCGATT
1 TATGAAATCGCATTGCGATTTACGTATTCGCATTGCGAAT
* * * * * *
1682113 TACGTATTCGCATTGCGATTTTCCTAATTCGCATTGCGATT
1 TATGAAATCGCATTGCGATTTACGT-ATTCGCATTGCGAAT
* *
1682154 TACT-TAATCGCGTTGCGATTTACGTATTCGCATTGCGAAT
1 TA-TGAAATCGCATTGCGATTTACGTATTCGCATTGCGAAT
** * * *
1682194 TATGAAAATCGCAACGCGA-ATACGTAAATCGCAATGCGAAT
1 TATG-AAATCGCATTGCGATTTACGT-ATTCGCATTGCGAAT
* * * *
1682235 TAGGAAAATTGCATTGTGATAGT-CAGTA-TCGCATTGCG-AT
1 TATG-AAATCGCATTGCGAT-TTAC-GTATTCGCATTGCGAAT
* * *
1682275 TTTCCAAATTCGCATTGCGATTTACTTATTCGCATTGCGAAT
1 TAT-GAAA-TCGCATTGCGATTTACGTATTCGCATTGCGAAT
1682317 T
1 T
1682318 GGAAAAATCG
Statistics
Matches: 195, Mismatches: 37, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
39 1 0.01
40 82 0.42
41 104 0.53
42 5 0.03
43 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (40 bp):
TATGAAATCGCATTGCGATTTACGTATTCGCATTGCGAAT
Found at i:1682212 original size:21 final size:21
Alignment explanation
Indices: 1682188--1682243 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
1682178 TATTCGCATT
*
1682188 GCGAATTATGAAAATCGCAAC
1 GCGAATTACGAAAATCGCAAC
* *
1682209 GCGAA-TACGTAAATCGCAAT
1 GCGAATTACGAAAATCGCAAC
*
1682229 GCGAATTAGGAAAAT
1 GCGAATTACGAAAAT
1682244 TGCATTGTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (21 bp):
GCGAATTACGAAAATCGCAAC
Found at i:1682224 original size:61 final size:61
Alignment explanation
Indices: 1682036--1682232 Score: 150
Period size: 61 Copynumber: 3.2 Consensus size: 61
1682026 TGGCGCTATG
* * ** * ** * *
1682036 TAAATCGCATTACGATTTACGTATTCGCATTGCGATT-TACGTATTCGCATTGTGATTTA-
1 TAAATCGCATTGCGATTTACGTATTCGCATTGCGATTATCCAAAATCGCAACGCGATATAC
* * * * * ** *
1682095 TGTATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTAC
1 T-AAATCGCATTGCGATTTACGTATTCGCATTGCGATTATCCAAAATCGCAACGCGATATAC
* * *
1682157 TTAATCGCGTTGCGATTTACGTATTCGCATTGCGAATTAT-GAAAATCGCAACGCGA-ATAC
1 TAAATCGCATTGCGATTTACGTATTCGCATTGCG-ATTATCCAAAATCGCAACGCGATATAC
*
1682217 GTAAATCGCAATGCGA
1 -TAAATCGCATTGCGA
1682233 ATTAGGAAAA
Statistics
Matches: 114, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
59 1 0.01
60 36 0.32
61 72 0.63
62 5 0.04
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (61 bp):
TAAATCGCATTGCGATTTACGTATTCGCATTGCGATTATCCAAAATCGCAACGCGATATAC
Found at i:1682226 original size:81 final size:81
Alignment explanation
Indices: 1682060--1682232 Score: 186
Period size: 81 Copynumber: 2.1 Consensus size: 81
1682050 ATTTACGTAT
* * * * * *
1682060 TCGCATTGCGATTTACGTATTCGCATTGTGATTTATGTATTCGCATTGCGATTTACGTATTCGCA
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTATTCGCATTGCGAATTACGAAATCGCA
** * * *
1682125 TTGCGATTTTCCTAAT
66 ACGCGATATACCTAAA
* * *
1682141 TCGCATTGCGATTTACTTAATCGCGTTGCGATTTACGTATTCGCATTGCGAATTATGAAAATCGC
1 TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTATTCGCATTGCGAATTACG-AAATCGC
*
1682206 AACGCGA-ATACGTAAA
65 AACGCGATATACCTAAA
*
1682222 TCGCAATGCGA
1 TCGCATTGCGA
1682233 ATTAGGAAAA
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
81 65 0.87
82 10 0.13
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (81 bp):
TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTATTCGCATTGCGAATTACGAAATCGCA
ACGCGATATACCTAAA
Found at i:1682307 original size:20 final size:21
Alignment explanation
Indices: 1682263--1682314 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
1682253 ATAGTCAGTA
*
1682263 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
1682284 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
1682304 TCGCATTGCGA
1 TCGCATTGCGA
1682315 ATTGGAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:1682356 original size:21 final size:22
Alignment explanation
Indices: 1682304--1682356 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
1682294 ATTTACTTAT
1682304 TCGCATTGCG-AATTGGAAAAA
1 TCGCATTGCGAAATTGGAAAAA
**
1682325 TCGCAACGCGAAATTGG-AAAA
1 TCGCATTGCGAAATTGGAAAAA
1682346 TCGCATTGCGA
1 TCGCATTGCGA
1682357 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGAAAAA
Found at i:1688892 original size:24 final size:22
Alignment explanation
Indices: 1688853--1688900 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
1688843 CTTTTTTTAA
1688853 AAAATTAAATTTATTA-AATAAT
1 AAAATTAAATTTATTATAA-AAT
*
1688875 AAAATTCAATCTTAATTATAAAAT
1 AAAATTAAAT-TT-ATTATAAAAT
1688899 AA
1 AA
1688901 GTGTTCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 9 0.41
23 2 0.09
24 9 0.41
25 2 0.09
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATTAAATTTATTATAAAAT
Found at i:1689071 original size:21 final size:21
Alignment explanation
Indices: 1689046--1689102 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
1689036 ATATTTTGGT
*
1689046 AATTTTAAAAATTTTATTTAA
1 AATTTTAAAAATTTTATATAA
* * *
1689067 AATTTTAAAAAATATATATAT
1 AATTTTAAAAATTTTATATAA
*
1689088 ATTTTTAAAAATTTT
1 AATTTTAAAAATTTT
1689103 GAAATATCCC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATTTTAAAAATTTTATATAA
Found at i:1689885 original size:16 final size:16
Alignment explanation
Indices: 1689851--1689891 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
1689841 GTTTACTTCA
*
1689851 GAATAATT-AAACGCT
1 GAATAATTCAAACACT
*
1689866 GAATAATTCAAATACT
1 GAATAATTCAAACACT
1689882 GAATAATTCA
1 GAATAATTCA
1689892 TAGACTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (16 bp):
GAATAATTCAAACACT
Found at i:1702936 original size:25 final size:26
Alignment explanation
Indices: 1702890--1702945 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
1702880 ATTTTAATAC
* * *
1702890 TTTATTCATAATTTTTATATATTATT
1 TTTATTCATAAATTTAAAATATTATT
*
1702916 TTTATT-ATAAATTTAAAATATTTTT
1 TTTATTCATAAATTTAAAATATTATT
1702941 TTTAT
1 TTTAT
1702946 ATATTCGAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TTTATTCATAAATTTAAAATATTATT
Found at i:1703229 original size:40 final size:41
Alignment explanation
Indices: 1703174--1703269 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 41
1703164 AAACATGTAT
1703174 AAATATAGGTATAACTTCAATATGAA-AAAAAAATACAGCA
1 AAATATAGGTATAACTTCAATATGAACAAAAAAATACAGCA
* * *
1703214 AAATATAGGTATAACTTCAATATGAACAAAACATTACATCA
1 AAATATAGGTATAACTTCAATATGAACAAAAAAATACAGCA
* *
1703255 AAGTATAGGTGTAAC
1 AAATATAGGTATAAC
1703270 AACGTTATTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 26 0.52
41 24 0.48
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.25
Consensus pattern (41 bp):
AAATATAGGTATAACTTCAATATGAACAAAAAAATACAGCA
Found at i:1703847 original size:27 final size:27
Alignment explanation
Indices: 1703796--1703846 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1703786 TAATTTTATT
*
1703796 TTAAAAAATCCAAAACTTTTGAAAATC
1 TTAAAAAAACCAAAACTTTTGAAAATC
*
1703823 TTAAAAAAACCTAAAC-TTTGAAAA
1 TTAAAAAAACCAAAACTTTTGAAAA
1703847 ACTTTATTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.55, C:0.14, G:0.04, T:0.27
Consensus pattern (27 bp):
TTAAAAAAACCAAAACTTTTGAAAATC
Found at i:1708284 original size:23 final size:24
Alignment explanation
Indices: 1708244--1708294 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
1708234 ACTTTCTTTA
1708244 AAAATATTTAATGGTATTAAT-AT
1 AAAATATTTAATGGTATTAATAAT
*
1708267 AAAATAATTTAAT-TTATTAATAAT
1 AAAAT-ATTTAATGGTATTAATAAT
1708291 AAAA
1 AAAA
1708295 CTTGAATGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
AAAATATTTAATGGTATTAATAAT
Found at i:1708610 original size:3 final size:3
Alignment explanation
Indices: 1708602--1708728 Score: 238
Period size: 3 Copynumber: 42.7 Consensus size: 3
1708592 TCATACACTG
*
1708602 TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA T-A TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1708649 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1708697 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1708729 TGGAGCAGAA
Statistics
Matches: 121, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
2 2 0.02
3 119 0.98
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1711401 original size:35 final size:35
Alignment explanation
Indices: 1711356--1711440 Score: 170
Period size: 35 Copynumber: 2.4 Consensus size: 35
1711346 AAGTAGACAT
1711356 CATCATATGTGGTTTGCTCTTTCAAGGAAAAAAAA
1 CATCATATGTGGTTTGCTCTTTCAAGGAAAAAAAA
1711391 CATCATATGTGGTTTGCTCTTTCAAGGAAAAAAAA
1 CATCATATGTGGTTTGCTCTTTCAAGGAAAAAAAA
1711426 CATCATATGTGGTTT
1 CATCATATGTGGTTT
1711441 TTCTTGGGCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (35 bp):
CATCATATGTGGTTTGCTCTTTCAAGGAAAAAAAA
Found at i:1712623 original size:30 final size:32
Alignment explanation
Indices: 1712589--1712648 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
1712579 GCTCGAGAGC
1712589 TTTCG-AGTCAAGTCAAACTT-TAATTTTTTA
1 TTTCGAAGTCAAGTCAAACTTATAATTTTTTA
* *
1712619 TTTCGAATTCGAGTCAAACTTGATAATTTT
1 TTTCGAAGTCAAGTCAAACTT-ATAATTTT
1712649 AAGTTTATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.20
31 13 0.52
33 7 0.28
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (32 bp):
TTTCGAAGTCAAGTCAAACTTATAATTTTTTA
Found at i:1738672 original size:29 final size:29
Alignment explanation
Indices: 1738639--1738694 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
1738629 TATTAAGAGA
1738639 GGTAAACTTAAACTTATAAAATTTTAAGG
1 GGTAAACTTAAACTTATAAAATTTTAAGG
* *
1738668 GGTAAATTTGAACTTATAAAATTTTAA
1 GGTAAACTTAAACTTATAAAATTTTAA
1738695 AAGGCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (29 bp):
GGTAAACTTAAACTTATAAAATTTTAAGG
Found at i:1743323 original size:31 final size:31
Alignment explanation
Indices: 1743286--1743360 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
1743276 TCAAAAGTAA
* *
1743286 AAAAAAAT-AGTCAATAATATTATCGATTTAT
1 AAAAAAATGA-TCAATAATATCATCAATTTAT
*
1743317 AAAAAAATGATCATTAATATCATCAATTTAT
1 AAAAAAATGATCAATAATATCATCAATTTAT
* *
1743348 AACAAAATCATCA
1 AAAAAAATGATCA
1743361 CTTTACCGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 37 0.97
32 1 0.03
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (31 bp):
AAAAAAATGATCAATAATATCATCAATTTAT
Found at i:1744505 original size:13 final size:13
Alignment explanation
Indices: 1744471--1744513 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
1744461 ACAAACAATA
*
1744471 AAAAGAAAAAAATC
1 AAAA-AAAAAAATT
1744485 AAATAAAAAAAATT
1 AAA-AAAAAAAATT
*
1744499 AAAAAAAAACATT
1 AAAAAAAAAAATT
1744512 AA
1 AA
1744514 CTTAAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 11 0.42
14 14 0.54
15 1 0.04
ACGTcount: A:0.79, C:0.05, G:0.02, T:0.14
Consensus pattern (13 bp):
AAAAAAAAAAATT
Found at i:1745304 original size:73 final size:73
Alignment explanation
Indices: 1745227--1745373 Score: 267
Period size: 73 Copynumber: 2.0 Consensus size: 73
1745217 GGGTTGTGTT
* * *
1745227 GATATAGATGGTTAGGGTTATCACCATAGGTAGCTGATTTAGGTGTGTTTTTACCAGGATTTATG
1 GATATAGATGGTTAGGGTCATCACCATAGGTAGCTGATTTAGATGTGTTTTTACAAGGATTTATG
1745292 TTAATTTA
66 TTAATTTA
1745300 GATATAGATGGTTAGGGTCATCACCATAGGTAGCTGATTTAGATGTGTTTTTACAAGGATTTATG
1 GATATAGATGGTTAGGGTCATCACCATAGGTAGCTGATTTAGATGTGTTTTTACAAGGATTTATG
1745365 TTAATTTA
66 TTAATTTA
1745373 G
1 G
1745374 GGTTTTCCTG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.40
Consensus pattern (73 bp):
GATATAGATGGTTAGGGTCATCACCATAGGTAGCTGATTTAGATGTGTTTTTACAAGGATTTATG
TTAATTTA
Found at i:1762588 original size:35 final size:35
Alignment explanation
Indices: 1762542--1762611 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
1762532 TTTGATTGGG
1762542 AAAAGAAATGTCATTTAACAATTGAAAGGAAGTGC
1 AAAAGAAATGTCATTTAACAATTGAAAGGAAGTGC
1762577 AAAAGAAATGTCATTTAACAATTGAAAGGAAGTGC
1 AAAAGAAATGTCATTTAACAATTGAAAGGAAGTGC
1762612 CTCAGATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.23
Consensus pattern (35 bp):
AAAAGAAATGTCATTTAACAATTGAAAGGAAGTGC
Found at i:1772644 original size:18 final size:17
Alignment explanation
Indices: 1772621--1772679 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
1772611 ATTATACGTT
1772621 TTTTTTAGAATTTTCTGA
1 TTTTTTAGAATTTTCT-A
* *
1772639 TTTTTTAGTATTTTAATA
1 TTTTTTAGAATTTT-CTA
*
1772657 GTTTTT-GAATTTTCTAA
1 TTTTTTAGAATTTTCT-A
1772674 TTTTTT
1 TTTTTT
1772680 TAAAAAATTA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
16 1 0.03
17 12 0.36
18 19 0.58
19 1 0.03
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.66
Consensus pattern (17 bp):
TTTTTTAGAATTTTCTA
Found at i:1774177 original size:128 final size:127
Alignment explanation
Indices: 1773945--1774320 Score: 539
Period size: 128 Copynumber: 3.0 Consensus size: 127
1773935 TTGCAAAATT
* *
1773945 TCATTTCTGGTAAAAAAATTGAGTCA--TATTTTTTACAAAAAAAAATTCTTGGTGAACCGTGTT
1 TCATTTCTGGTAAAAAAATTGAGT-AGTTATATTTT-CAACAAAAAATTCTTGGTGAACCGTGTT
1774008 TGTGAAAATCAATTTTGTTGGACACACTAAAATAGTCTGGGGAAGAGTGTCGAATCTTTTAATC
64 TGTGAAAATCAATTTTGTTGGACACACTAAAATAGTCTGGGGAAGAGTGTCGAATCTTTTAATC
* * *
1774072 TCATTTCTGGTAAAAAAAGTGAGTAGTTATATTTTCAACAAAAGAATTCTTGGTGAACCATGTCT
1 TCATTTCTGGTAAAAAAATTGAGTAGTTATATTTTCAACAAAA-AATTCTTGGTGAACCGTGTTT
* * *
1774137 GTGAAAATCAATTTTGTTAGTCACACTAAAATAGTTTGGGGAAGAGTGTCGAATCTTTTAATC
65 GTGAAAATCAATTTTGTTGGACACACTAAAATAGTCTGGGGAAGAGTGTCGAATCTTTTAATC
* * * *
1774200 TCATTTCTGGTAAAAAAAATTGAGTAGTTATATTCTCTACAAAAAA--ATT--TCAACCGTGTTT
1 TCATTTCTGGT-AAAAAAATTGAGTAGTTATATTTTCAACAAAAAATTCTTGGTGAACCGTGTTT
* * *
1774261 GTGAAAATCAATTTTGTTGGACACACTTAAATAGTCTGGGAAAGAGTGTCGAATCGTTTA
65 GTGAAAATCAATTTTGTTGGACACACTAAAATAGTCTGGGGAAGAGTGTCGAATCTTTTA
1774321 CTACTTGTGG
Statistics
Matches: 224, Mismatches: 21, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
124 63 0.28
126 3 0.01
127 30 0.13
128 99 0.44
129 29 0.13
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (127 bp):
TCATTTCTGGTAAAAAAATTGAGTAGTTATATTTTCAACAAAAAATTCTTGGTGAACCGTGTTTG
TGAAAATCAATTTTGTTGGACACACTAAAATAGTCTGGGGAAGAGTGTCGAATCTTTTAATC
Found at i:1787503 original size:26 final size:26
Alignment explanation
Indices: 1787467--1787518 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1787457 TAATAATCCC
*
1787467 TGATGAATATCCGCCTCCGCAAAAAG
1 TGATGAATATCCCCCTCCGCAAAAAG
1787493 TGATGAATATCCCCCTCCGCAAAAAG
1 TGATGAATATCCCCCTCCGCAAAAAG
1787519 AACTACATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (26 bp):
TGATGAATATCCCCCTCCGCAAAAAG
Found at i:1790382 original size:23 final size:21
Alignment explanation
Indices: 1790338--1790380 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1790328 AAGTTCTGCC
1790338 ACTACACTCCGATATATATAT
1 ACTACACTCCGATATATATAT
1790359 ACTACACTCCGATATATATAT
1 ACTACACTCCGATATATATAT
1790380 A
1 A
1790381 TATATCACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (21 bp):
ACTACACTCCGATATATATAT
Found at i:1799142 original size:21 final size:21
Alignment explanation
Indices: 1799098--1799142 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1799088 GATTTCTGGG
* * *
1799098 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCACT
*
1799119 CAAGGGGAACCGATACCCCCT
1 CAAGGGGAACCGATACCCACT
1799140 CAA
1 CAA
1799143 ACGAACCAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.13
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCACT
Found at i:1800698 original size:103 final size:103
Alignment explanation
Indices: 1800514--1800723 Score: 348
Period size: 103 Copynumber: 2.0 Consensus size: 103
1800504 GGGTCTACGC
* * *
1800514 GGTCCTTCGGGACATATATGTATTTTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCATTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTATGGTGAGACACATACTTGAT
*
1800579 CCATGGCATATGTATATAATTCTTAAGGAATGATATGT
66 CCATAGCATATGTATATAATTCTTAAGGAATGATATGT
*
1800617 GGTCATTCGGGAGATATATGTATTCTTTGGAACATGTGTGAAGTATGGTGAGACACATACTTGAT
1 GGTCATTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTATGGTGAGACACATACTTGAT
* * *
1800682 CCCTAGTATATGTATATGATTCTTAAGGAATGATATGT
66 CCATAGCATATGTATATAATTCTTAAGGAATGATATGT
1800720 GGTC
1 GGTC
1800724 CTTATGGACA
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 99 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (103 bp):
GGTCATTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTATGGTGAGACACATACTTGAT
CCATAGCATATGTATATAATTCTTAAGGAATGATATGT
Found at i:1800781 original size:23 final size:23
Alignment explanation
Indices: 1800743--1800805 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
1800733 ATTATTATAT
* *
1800743 GGCACTACGGTACAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
*
1800766 GGCAC-TCTGGTGCAATTCTACGT
1 GGCACTTC-GGTGCAATTCTACGC
*
1800789 GGTACTTCGGTGCAATT
1 GGCACTTCGGTGCAATT
1800806 AGACGAGCTG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
22 1 0.03
23 31 0.91
24 2 0.06
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:1804313 original size:23 final size:22
Alignment explanation
Indices: 1804265--1804313 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
1804255 ACAGAATGTC
1804265 AAGG-GGGAACCGATACCCCCA
1 AAGGAGGGAACCGATACCCCCA
* *
1804286 CAGGAGGGAACCGATTCCCCCTA
1 AAGGAGGGAACCGATACCCCC-A
1804309 AAGGA
1 AAGGA
1804314 AAATTGTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 15 0.65
23 5 0.22
ACGTcount: A:0.33, C:0.31, G:0.29, T:0.08
Consensus pattern (22 bp):
AAGGAGGGAACCGATACCCCCA
Found at i:1805478 original size:24 final size:24
Alignment explanation
Indices: 1805435--1805487 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
1805425 TAAGTGAACC
*
1805435 ATGTG-TTTATATGTATATGAGAT
1 ATGTGATTTATATGTAGATGAGAT
*
1805458 ATGTGATTTATATG-ACGATGAGCT
1 ATGTGATTTATATGTA-GATGAGAT
1805482 ATGTGA
1 ATGTGA
1805488 AAGAACTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.30, C:0.04, G:0.25, T:0.42
Consensus pattern (24 bp):
ATGTGATTTATATGTAGATGAGAT
Found at i:1805784 original size:103 final size:103
Alignment explanation
Indices: 1805603--1805825 Score: 376
Period size: 103 Copynumber: 2.2 Consensus size: 103
1805593 GAGGGTCTAC
* *
1805603 GTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTG
1 GTGGTCCTTCAGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATACTTG
* * *
1805668 ATCCTTGGCATATGTATATGATTCTTAAGGAATGATAT
66 ATCCCTAGCATATGCATATGATTCTTAAGGAATGATAT
1805706 GTGGTCCTTCAGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATACTTG
1 GTGGTCCTTCAGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATACTTG
*
1805771 ATCCCTAGTATATGCATATGATTCTTAAGGAATGATAT
66 ATCCCTAGCATATGCATATGATTCTTAAGGAATGATAT
1805809 GTGGTCCTT-ATGGACAT
1 GTGGTCCTTCA-GGACAT
1805826 TATTATATAG
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
102 1 0.01
103 112 0.99
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.35
Consensus pattern (103 bp):
GTGGTCCTTCAGGACATATATGTATTCTTTGGAACAGGTGTGAAGTCTGGTGAGACACATACTTG
ATCCCTAGCATATGCATATGATTCTTAAGGAATGATAT
Found at i:1805871 original size:23 final size:23
Alignment explanation
Indices: 1805841--1805901 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
1805831 TATAGCATTA
1805841 CGGTGCAATTCTACGCGGCACTC
1 CGGTGCAATTCTACGCGGCACTC
** *
1805864 CGGTGCAATTCTACATGGCACTT
1 CGGTGCAATTCTACGCGGCACTC
*
1805887 CGGTGCAATTATACG
1 CGGTGCAATTCTACG
1805902 AGCTGTGGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (23 bp):
CGGTGCAATTCTACGCGGCACTC
Found at i:1810233 original size:14 final size:14
Alignment explanation
Indices: 1810214--1810250 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
1810204 CAAGTTTAAT
1810214 TTTTATTTAAATTA
1 TTTTATTTAAATTA
1810228 TTTTATTTAAATTA
1 TTTTATTTAAATTA
1810242 TTTTATTTA
1 TTTTATTTA
1810251 TATTTATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTATTTAAATTA
Found at i:1811984 original size:18 final size:18
Alignment explanation
Indices: 1811947--1811984 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1811937 TCAAAAACAC
*
1811947 AAAAACAAAAAAGGCAAA
1 AAAAACAAAAAAAGCAAA
1811965 AAAAACAAAAAAAGCTAAA
1 AAAAACAAAAAAAGC-AAA
1811984 A
1 A
1811985 TTTCAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.79, C:0.11, G:0.08, T:0.03
Consensus pattern (18 bp):
AAAAACAAAAAAAGCAAA
Found at i:1815512 original size:21 final size:22
Alignment explanation
Indices: 1815473--1815545 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 22
1815463 TCGATTTTTT
1815473 ATATTA-TTAAA-AA-TA-AAA
1 ATATTATTTAAATAATTATAAA
*
1815491 ATATTATTTTAATAATT-TAAA
1 ATATTATTTAAATAATTATAAA
*
1815512 ATA-TA-ATAAATAATTATAAA
1 ATATTATTTAAATAATTATAAA
1815532 TATATTATTATAAA
1 -ATATTATT-TAAA
1815546 GTACATTAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
18 6 0.14
19 12 0.29
20 8 0.19
21 10 0.24
22 2 0.05
24 4 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
ATATTATTTAAATAATTATAAA
Found at i:1816706 original size:13 final size:13
Alignment explanation
Indices: 1816688--1816722 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
1816678 ACTTGATAAT
**
1816688 TTTAAAATTTTTA
1 TTTAAAATTTAAA
1816701 TTTAAAATTTAAA
1 TTTAAAATTTAAA
1816714 TTTAAAATT
1 TTTAAAATT
1816723 ACATATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTAAAATTTAAA
Found at i:1820332 original size:17 final size:18
Alignment explanation
Indices: 1820311--1820352 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
1820301 TATTATAAAG
*
1820311 AATATAAT-ATTTTAAAT
1 AATATAATGATTTAAAAT
*
1820328 TATAT-ATGATTTAAAAT
1 AATATAATGATTTAAAAT
1820345 AATATAAT
1 AATATAAT
1820353 TTTATTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 2 0.10
17 16 0.80
18 2 0.10
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
AATATAATGATTTAAAAT
Found at i:1831202 original size:29 final size:30
Alignment explanation
Indices: 1831156--1831228 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
1831146 CTCTCCCTCC
* * * **
1831156 TATTTTTCTCACCAAACTTT-CAATTTTTA
1 TATTTTGCTCACTAAACTTTACAAATTAAA
*
1831185 TATTTTGCTCACTGAACTTTACAAATTAAA
1 TATTTTGCTCACTAAACTTTACAAATTAAA
1831215 TCATTTTGCTCACT
1 T-ATTTTGCTCACT
1831229 CCCATGTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
29 17 0.47
30 7 0.19
31 12 0.33
ACGTcount: A:0.29, C:0.21, G:0.04, T:0.47
Consensus pattern (30 bp):
TATTTTGCTCACTAAACTTTACAAATTAAA
Found at i:1832707 original size:37 final size:37
Alignment explanation
Indices: 1832631--1832707 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
1832621 TTTTTATATT
*
1832631 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
1832668 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
1832705 TTT
1 TTT
1832708 GTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:1833445 original size:17 final size:17
Alignment explanation
Indices: 1833420--1833458 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
1833410 AATTTACAAT
*
1833420 TAATT-TAAATTATATC
1 TAATTATAAATAATATC
1833436 TAATTATAAATAATATC
1 TAATTATAAATAATATC
1833453 TAATTA
1 TAATTA
1833459 ATTTGATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:1835376 original size:9 final size:9
Alignment explanation
Indices: 1835362--1835474 Score: 73
Period size: 10 Copynumber: 11.8 Consensus size: 9
1835352 GGCTGTTGGA
1835362 AACCGGTTT
1 AACCGGTTT
1835371 AACCGGTTTT
1 AACCGG-TTT
1835381 CAACCGGTTCT
1 -AACCGGTT-T
*
1835392 GACCGGTTT
1 AACCGGTTT
*
1835401 GACCGGTTT
1 AACCGGTTT
*
1835410 CAACCGGTTCG
1 -AACCGGTT-T
1835421 AACCGGTTT
1 AACCGGTTT
* *
1835430 GACCGGTCT
1 AACCGGTTT
*
1835439 GACTCGGTTT
1 AAC-CGGTTT
* *
1835449 GACCGGTCTG
1 AACCGGT-TT
*
1835459 AGCCGGTTT
1 AACCGGTTT
*
1835468 GACCGGT
1 AACCGGT
1835475 CTGACCCGAC
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
9 36 0.43
10 41 0.49
11 7 0.08
ACGTcount: A:0.15, C:0.27, G:0.29, T:0.29
Consensus pattern (9 bp):
AACCGGTTT
Found at i:1835407 original size:19 final size:18
Alignment explanation
Indices: 1835383--1835480 Score: 117
Period size: 19 Copynumber: 5.2 Consensus size: 18
1835373 CCGGTTTTCA
*
1835383 ACCGGTTCTGACCGGTTTG
1 ACCGGTT-TGACCGGTCTG
*
1835402 ACCGGTTTCAACCGGT-TCG
1 ACCGGTTT-GACCGGTCT-G
1835421 AACCGGTTTGACCGGTCTG
1 -ACCGGTTTGACCGGTCTG
1835440 ACTCGGTTTGACCGGTCTG
1 AC-CGGTTTGACCGGTCTG
1835459 AGCCGGTTTGACCGGTCTG
1 A-CCGGTTTGACCGGTCTG
1835478 ACC
1 ACC
1835481 CGACCCGACT
Statistics
Matches: 71, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
18 6 0.08
19 55 0.77
20 10 0.14
ACGTcount: A:0.13, C:0.29, G:0.31, T:0.28
Consensus pattern (18 bp):
ACCGGTTTGACCGGTCTG
Found at i:1835425 original size:29 final size:30
Alignment explanation
Indices: 1835362--1835436 Score: 118
Period size: 29 Copynumber: 2.5 Consensus size: 30
1835352 GGCTGTTGGA
*
1835362 AACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 AACCGGTTTGACCGG-TTTCAACCGGTTCTG
1835393 -ACCGGTTTGACCGGTTTCAACCGGTTC-G
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
1835421 AACCGGTTTGACCGGT
1 AACCGGTTTGACCGGT
1835437 CTGACTCGGT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 1 0.02
29 28 0.67
30 13 0.31
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (30 bp):
AACCGGTTTGACCGGTTTCAACCGGTTCTG
Found at i:1835446 original size:29 final size:27
Alignment explanation
Indices: 1835363--1835474 Score: 107
Period size: 29 Copynumber: 3.9 Consensus size: 27
1835353 GCTGTTGGAA
* *
1835363 ACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 ACCGGTTTGACCGG-TTT-GACCGGTTC-G
*
1835393 ACCGGTTTGACCGGTTTCAACCGGTTCG
1 ACCGGTTTGACCGGTTT-GACCGGTTCG
* *
1835421 AACCGGTTTGACCGGTCTGACTCGGTTTG
1 -ACCGGTTTGACCGGTTTGAC-CGGTTCG
*
1835450 ACCGGTCTGAGCCGGTTTGACCGGT
1 ACCGGTTTGA-CCGGTTTGACCGGT
1835475 CTGACCCGAC
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
28 16 0.22
29 44 0.60
30 13 0.18
ACGTcount: A:0.14, C:0.27, G:0.29, T:0.29
Consensus pattern (27 bp):
ACCGGTTTGACCGGTTTGACCGGTTCG
Found at i:1835454 original size:38 final size:37
Alignment explanation
Indices: 1835363--1835480 Score: 141
Period size: 38 Copynumber: 3.1 Consensus size: 37
1835353 GCTGTTGGAA
*
1835363 ACCGGTTTAACCGGTTTTC-AACCGGTTCTGACCGGTTTG
1 ACCGGTTTAACCGG--TTCGAACCGGTT-TGACCGGTCTG
1835402 ACCGGTTTCAACCGGTTCGAACCGGTTTGACCGGTCTG
1 ACCGGTTT-AACCGGTTCGAACCGGTTTGACCGGTCTG
* *
1835440 ACTCGGTTTGACCGG-TCTGAGCCGGTTTGACCGGTCTG
1 AC-CGGTTTAACCGGTTC-GAACCGGTTTGACCGGTCTG
1835478 ACC
1 ACC
1835481 CGACCCGACT
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
37 3 0.04
38 41 0.57
39 22 0.31
40 6 0.08
ACGTcount: A:0.14, C:0.28, G:0.29, T:0.29
Consensus pattern (37 bp):
ACCGGTTTAACCGGTTCGAACCGGTTTGACCGGTCTG
Found at i:1835505 original size:22 final size:22
Alignment explanation
Indices: 1835477--1835519 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1835467 TGACCGGTCT
*
1835477 GACCCGACCCGACTGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1835499 GACCCGACCCGACCGTTGACC
1 GACCCGACCCGACCGTTGACC
1835520 GTTGACCGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.47, G:0.23, T:0.12
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:1835521 original size:7 final size:7
Alignment explanation
Indices: 1835509--1835546 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
1835499 GACCCGACCC
1835509 GACCGTT
1 GACCGTT
1835516 GACCGTT
1 GACCGTT
1835523 GACCGTT
1 GACCGTT
1835530 GACCGTT
1 GACCGTT
1835537 GACCGTT
1 GACCGTT
1835544 GAC
1 GAC
1835547 TTTCTTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.26
Consensus pattern (7 bp):
GACCGTT
Found at i:1836484 original size:63 final size:63
Alignment explanation
Indices: 1836416--1836539 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
1836406 CTAATGTGAC
* ** * *
1836416 TCTTAGGTAGGCTCTGCGGCCCTGAGATC-ATTCTCGGGTAGGCCCTGC-GGCCCTAAGATGTGT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTA-TCTCGGGTAGGCCCT-CAGGCCCTAAGATGTGT
* *
1836479 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTTGGGTAGGCTCTCAGGCCCTAAGATGT
1 TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGT
1836540 TCCCTTAGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 1 0.02
63 50 0.96
64 1 0.02
ACGTcount: A:0.17, C:0.28, G:0.29, T:0.26
Consensus pattern (63 bp):
TCTTAGGTAGGCCCCACGGCCCCGAAATCTATCTCGGGTAGGCCCTCAGGCCCTAAGATGTGT
Found at i:1842751 original size:9 final size:9
Alignment explanation
Indices: 1842737--1842849 Score: 73
Period size: 10 Copynumber: 11.8 Consensus size: 9
1842727 GGCTGCTGGA
1842737 AACCGGTTT
1 AACCGGTTT
1842746 AACCGGTTTT
1 AACCGG-TTT
1842756 CAACCGGTTCT
1 -AACCGGTT-T
*
1842767 GACCGGTTT
1 AACCGGTTT
*
1842776 GACCGGTTT
1 AACCGGTTT
*
1842785 CAACCGGTTCG
1 -AACCGGTT-T
1842796 AACCGGTTT
1 AACCGGTTT
* *
1842805 GACCGGTCT
1 AACCGGTTT
*
1842814 GACTCGGTTT
1 AAC-CGGTTT
* *
1842824 GACCGGTCTG
1 AACCGGT-TT
*
1842834 AGCCGGTTT
1 AACCGGTTT
*
1842843 GACCGGT
1 AACCGGT
1842850 CTGACCCGAC
Statistics
Matches: 84, Mismatches: 13, Indels: 14
0.76 0.12 0.13
Matches are distributed among these distances:
9 36 0.43
10 41 0.49
11 7 0.08
ACGTcount: A:0.15, C:0.27, G:0.29, T:0.29
Consensus pattern (9 bp):
AACCGGTTT
Found at i:1842782 original size:19 final size:18
Alignment explanation
Indices: 1842758--1842855 Score: 117
Period size: 19 Copynumber: 5.2 Consensus size: 18
1842748 CCGGTTTTCA
*
1842758 ACCGGTTCTGACCGGTTTG
1 ACCGGTT-TGACCGGTCTG
*
1842777 ACCGGTTTCAACCGGT-TCG
1 ACCGGTTT-GACCGGTCT-G
1842796 AACCGGTTTGACCGGTCTG
1 -ACCGGTTTGACCGGTCTG
1842815 ACTCGGTTTGACCGGTCTG
1 AC-CGGTTTGACCGGTCTG
1842834 AGCCGGTTTGACCGGTCTG
1 A-CCGGTTTGACCGGTCTG
1842853 ACC
1 ACC
1842856 CGACCCGACT
Statistics
Matches: 71, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
18 6 0.08
19 55 0.77
20 10 0.14
ACGTcount: A:0.13, C:0.29, G:0.31, T:0.28
Consensus pattern (18 bp):
ACCGGTTTGACCGGTCTG
Found at i:1842800 original size:29 final size:30
Alignment explanation
Indices: 1842737--1842811 Score: 118
Period size: 29 Copynumber: 2.5 Consensus size: 30
1842727 GGCTGCTGGA
*
1842737 AACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 AACCGGTTTGACCGG-TTTCAACCGGTTCTG
1842768 -ACCGGTTTGACCGGTTTCAACCGGTTC-G
1 AACCGGTTTGACCGGTTTCAACCGGTTCTG
1842796 AACCGGTTTGACCGGT
1 AACCGGTTTGACCGGT
1842812 CTGACTCGGT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 1 0.02
29 28 0.67
30 13 0.31
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.29
Consensus pattern (30 bp):
AACCGGTTTGACCGGTTTCAACCGGTTCTG
Found at i:1842821 original size:29 final size:27
Alignment explanation
Indices: 1842738--1842849 Score: 107
Period size: 29 Copynumber: 3.9 Consensus size: 27
1842728 GCTGCTGGAA
* *
1842738 ACCGGTTTAACCGGTTTTCAACCGGTTCTG
1 ACCGGTTTGACCGG-TTT-GACCGGTTC-G
*
1842768 ACCGGTTTGACCGGTTTCAACCGGTTCG
1 ACCGGTTTGACCGGTTT-GACCGGTTCG
* *
1842796 AACCGGTTTGACCGGTCTGACTCGGTTTG
1 -ACCGGTTTGACCGGTTTGAC-CGGTTCG
*
1842825 ACCGGTCTGAGCCGGTTTGACCGGT
1 ACCGGTTTGA-CCGGTTTGACCGGT
1842850 CTGACCCGAC
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
28 16 0.22
29 44 0.60
30 13 0.18
ACGTcount: A:0.14, C:0.27, G:0.29, T:0.29
Consensus pattern (27 bp):
ACCGGTTTGACCGGTTTGACCGGTTCG
Found at i:1842829 original size:38 final size:37
Alignment explanation
Indices: 1842738--1842855 Score: 141
Period size: 38 Copynumber: 3.1 Consensus size: 37
1842728 GCTGCTGGAA
*
1842738 ACCGGTTTAACCGGTTTTC-AACCGGTTCTGACCGGTTTG
1 ACCGGTTTAACCGG--TTCGAACCGGTT-TGACCGGTCTG
1842777 ACCGGTTTCAACCGGTTCGAACCGGTTTGACCGGTCTG
1 ACCGGTTT-AACCGGTTCGAACCGGTTTGACCGGTCTG
* *
1842815 ACTCGGTTTGACCGG-TCTGAGCCGGTTTGACCGGTCTG
1 AC-CGGTTTAACCGGTTC-GAACCGGTTTGACCGGTCTG
1842853 ACC
1 ACC
1842856 CGACCCGACT
Statistics
Matches: 72, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
37 3 0.04
38 41 0.57
39 22 0.31
40 6 0.08
ACGTcount: A:0.14, C:0.28, G:0.29, T:0.29
Consensus pattern (37 bp):
ACCGGTTTAACCGGTTCGAACCGGTTTGACCGGTCTG
Found at i:1842877 original size:5 final size:5
Alignment explanation
Indices: 1842869--1842909 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
1842859 CCCGACTGTT
*
1842869 GACCC GACCC GACCC GACCGTT GACCC GACCC GACCC GACC
1 GACCC GACCC GACCC GACC--C GACCC GACCC GACCC GACC
1842910 GTTGACCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 28 0.88
7 4 0.12
ACGTcount: A:0.20, C:0.54, G:0.22, T:0.05
Consensus pattern (5 bp):
GACCC
Found at i:1842880 original size:22 final size:22
Alignment explanation
Indices: 1842852--1842916 Score: 121
Period size: 22 Copynumber: 3.0 Consensus size: 22
1842842 TGACCGGTCT
*
1842852 GACCCGACCCGACTGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1842874 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCGACCGTTGACCC
1842896 GACCCGACCCGACCGTTGACC
1 GACCCGACCCGACCGTTGACC
1842917 GTTGACCGTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.18, C:0.48, G:0.23, T:0.11
Consensus pattern (22 bp):
GACCCGACCCGACCGTTGACCC
Found at i:1842918 original size:7 final size:7
Alignment explanation
Indices: 1842906--1842950 Score: 90
Period size: 7 Copynumber: 6.4 Consensus size: 7
1842896 GACCCGACCC
1842906 GACCGTT
1 GACCGTT
1842913 GACCGTT
1 GACCGTT
1842920 GACCGTT
1 GACCGTT
1842927 GACCGTT
1 GACCGTT
1842934 GACCGTT
1 GACCGTT
1842941 GACCGTT
1 GACCGTT
1842948 GAC
1 GAC
1842951 TTTCTTTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.16, C:0.29, G:0.29, T:0.27
Consensus pattern (7 bp):
GACCGTT
Found at i:1851379 original size:19 final size:19
Alignment explanation
Indices: 1851355--1851421 Score: 134
Period size: 19 Copynumber: 3.5 Consensus size: 19
1851345 AAATATTTTA
1851355 ATTTTAATATTAAAATTTG
1 ATTTTAATATTAAAATTTG
1851374 ATTTTAATATTAAAATTTG
1 ATTTTAATATTAAAATTTG
1851393 ATTTTAATATTAAAATTTG
1 ATTTTAATATTAAAATTTG
1851412 ATTTTAATAT
1 ATTTTAATAT
1851422 ATATATTGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (19 bp):
ATTTTAATATTAAAATTTG
Found at i:1858818 original size:64 final size:65
Alignment explanation
Indices: 1858744--1858868 Score: 243
Period size: 64 Copynumber: 1.9 Consensus size: 65
1858734 TTCTTCCCTC
1858744 AATTGAAATTATTAAAAAAATGTATTATGTCCTTATTAATTTC-AAGTAAAATGAATTAATAAGA
1 AATTGAAATTATTAAAAAAATGTATTATGTCCTTATTAATTTCGAAGTAAAATGAATTAATAAGA
1858808 AATTGAAATTATTAAAAAAATGTATTATGTCCTTATTAATTTCGAAGTAAAATGAATTAAT
1 AATTGAAATTATTAAAAAAATGTATTATGTCCTTATTAATTTCGAAGTAAAATGAATTAAT
1858869 CTTTCTTATT
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
64 43 0.72
65 17 0.28
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (65 bp):
AATTGAAATTATTAAAAAAATGTATTATGTCCTTATTAATTTCGAAGTAAAATGAATTAATAAGA
Found at i:1859896 original size:15 final size:15
Alignment explanation
Indices: 1859876--1859909 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
1859866 TCAAACGCCA
1859876 ACTTTCATGGAGGAC
1 ACTTTCATGGAGGAC
1859891 ACTTTCATGGAGGAC
1 ACTTTCATGGAGGAC
1859906 ACTT
1 ACTT
1859910 CCAGAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (15 bp):
ACTTTCATGGAGGAC
Found at i:1863576 original size:14 final size:15
Alignment explanation
Indices: 1863557--1863589 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1863547 AAAAATAAAA
1863557 AAAATAAT-ATTAAT
1 AAAATAATAATTAAT
*
1863571 AAAATATTAATTAAT
1 AAAATAATAATTAAT
1863586 AAAA
1 AAAA
1863590 ATATCATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATAATAATTAAT
Found at i:1864849 original size:27 final size:27
Alignment explanation
Indices: 1864819--1864880 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
1864809 CATTTGCAGT
**
1864819 GCAAAGACTGTTATGTTCGTTTGCCGC
1 GCAAAGACCATTATGTTCGTTTGCCGC
*
1864846 GCAAACACCATTATGTTCGTTTGCCGC
1 GCAAAGACCATTATGTTCGTTTGCCGC
1864873 GCAAAGAC
1 GCAAAGAC
1864881 AGATAGGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (27 bp):
GCAAAGACCATTATGTTCGTTTGCCGC
Found at i:1872388 original size:27 final size:27
Alignment explanation
Indices: 1872358--1872506 Score: 79
Period size: 27 Copynumber: 5.3 Consensus size: 27
1872348 CACCATGGAC
1872358 ACCTTGGGTACCTGCAACACCAACCGA
1 ACCTTGGGTACCTGCAACACCAACCGA
* * ** *
1872385 ACCTTGGACT-CCAGCGCCTGCACC-ACAGA
1 ACCTTGG-GTACC--TG-CAACACCAACCGA
1872414 CACCTTGGGTACCTGCAACACCAACCGA
1 -ACCTTGGGTACCTGCAACACCAACCGA
* * * ** **
1872442 TCCTTGGGCTCCAGCTCCCTCACC-ATGGA
1 ACCTTGGG-T--ACCTGCAACACCAACCGA
*
1872471 CACCTTGGGTACCTGTAACACCAACCGA
1 -ACCTTGGGTACCTGCAACACCAACCGA
1872499 ACCTTGGG
1 ACCTTGGG
1872507 CTCCAACTCC
Statistics
Matches: 85, Mismatches: 25, Indels: 24
0.63 0.19 0.18
Matches are distributed among these distances:
27 36 0.42
28 10 0.12
29 10 0.12
30 29 0.34
ACGTcount: A:0.24, C:0.38, G:0.20, T:0.17
Consensus pattern (27 bp):
ACCTTGGGTACCTGCAACACCAACCGA
Found at i:1872399 original size:57 final size:57
Alignment explanation
Indices: 1872320--1872531 Score: 300
Period size: 57 Copynumber: 3.7 Consensus size: 57
1872310 GCCGAGATCG
* *
1872320 CCAATCGAACCTTGGGCACCAGCGCCTGCACCATGGACACCTTGGGTACCTGCAACA
1 CCAACCGAACCTTGGGCTCCAGCGCCTGCACCATGGACACCTTGGGTACCTGCAACA
* **
1872377 CCAACCGAACCTTGGACTCCAGCGCCTGCACCACAGACACCTTGGGTACCTGCAACA
1 CCAACCGAACCTTGGGCTCCAGCGCCTGCACCATGGACACCTTGGGTACCTGCAACA
* * *
1872434 CCAACCGATCCTTGGGCTCCAGCTCCCT-CACCATGGACACCTTGGGTACCTGTAACA
1 CCAACCGAACCTTGGGCTCCAGC-GCCTGCACCATGGACACCTTGGGTACCTGCAACA
* * * *
1872491 CCAACCGAACCTTGGGCTCCAACTCCTGCACCTTGGGCACC
1 CCAACCGAACCTTGGGCTCCAGCGCCTGCACCATGGACACC
1872532 AGTACTTACA
Statistics
Matches: 137, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
56 3 0.02
57 131 0.96
58 3 0.02
ACGTcount: A:0.23, C:0.40, G:0.20, T:0.17
Consensus pattern (57 bp):
CCAACCGAACCTTGGGCTCCAGCGCCTGCACCATGGACACCTTGGGTACCTGCAACA
Found at i:1878673 original size:31 final size:29
Alignment explanation
Indices: 1878635--1878694 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
1878625 AATCAGTGAG
*
1878635 CTTAATGAGCACGAGTCGAGCAGCAAATTTT
1 CTTAATGAACACGAGTCGAGCA--AAATTTT
*
1878666 CTTAATGAACATGAGTCGAGCAAAATTTT
1 CTTAATGAACACGAGTCGAGCAAAATTTT
1878695 AACGAGCTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 7 0.26
31 20 0.74
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (29 bp):
CTTAATGAACACGAGTCGAGCAAAATTTT
Found at i:1885312 original size:21 final size:22
Alignment explanation
Indices: 1885283--1885327 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
1885273 ATAGGGTAAT
* *
1885283 TTCACTTTGATCAACTTTAAAA
1 TTCACTTTGACCAACATTAAAA
*
1885305 TTCA-TTTGACCATCATTAAAA
1 TTCACTTTGACCAACATTAAAA
1885326 TT
1 TT
1885328 TTAATTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.42
Consensus pattern (22 bp):
TTCACTTTGACCAACATTAAAA
Found at i:1885651 original size:18 final size:18
Alignment explanation
Indices: 1885625--1885661 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
1885615 AAAATTTATT
1885625 ACTTAATTCTTAGTTGCG
1 ACTTAATTCTTAGTTGCG
*
1885643 ACTTCATTCTTAGTTGCG
1 ACTTAATTCTTAGTTGCG
1885661 A
1 A
1885662 AATTAAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.16, T:0.43
Consensus pattern (18 bp):
ACTTAATTCTTAGTTGCG
Found at i:1890375 original size:60 final size:60
Alignment explanation
Indices: 1890263--1890375 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
1890253 ATAGTCGGGT
* * **
1890263 GATCATTTTGTAACTTTTAATAGTTGAGGGACTCAACAAAACAACATTCTATAGTCAAAA
1 GATCATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAACAACACCCTATAGTCAAAA
* * *
1890323 GATCATTTTGTAACTTTTAATAGTCGATGAACTTAATAAAACAATC-CCCTATA
1 GATCATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAACAA-CACCCTATA
1890376 ATTGGGAGAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
60 44 0.98
61 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.34
Consensus pattern (60 bp):
GATCATTTTGTAACTTTTAATAGTCGAGGAACTCAACAAAACAACACCCTATAGTCAAAA
Found at i:1894470 original size:42 final size:41
Alignment explanation
Indices: 1894408--1894609 Score: 280
Period size: 42 Copynumber: 4.8 Consensus size: 41
1894398 GTTTCCAGAT
* ** * * *
1894408 TCGCAACGCGAACTTCGACTATAACAACGCGAACTTCGACT-A
1 TCGCAACGCGAACTTGGACTATCGCAA--CGAATTTGGAATAA
1894450 TCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAA
1 TCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT-AA
* *
1894492 TCGCAAAGCAAACTTGGACTATCGCAACGAATTTGGAATAAA
1 TCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT-AA
1894534 TCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAA
1 TCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAT-AA
1894576 TCGCAACGCGAACTTGGACTATCGCAACGAATTT
1 TCGCAACGCGAACTTGGACTATCGCAACGAATTT
1894610 AGGTTAATGC
Statistics
Matches: 148, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
40 9 0.06
42 139 0.94
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (41 bp):
TCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAA
Found at i:1894472 original size:21 final size:21
Alignment explanation
Indices: 1894408--1894604 Score: 190
Period size: 21 Copynumber: 9.4 Consensus size: 21
1894398 GTTTCCAGAT
*
1894408 TCGCAACGCGAACTTCGACTA
1 TCGCAACGCGAACTTGGACTA
** *
1894429 TAACAACGCGAACTTCGACTA
1 TCGCAACGCGAACTTGGACTA
1894450 TCGCAACGCGAACTTGGACTA
1 TCGCAACGCGAACTTGGACTA
* *
1894471 TCGCAA--CGAATTTGGAATAAA
1 TCGCAACGCGAACTTGGACT--A
* *
1894492 TCGCAAAGCAAACTTGGACTA
1 TCGCAACGCGAACTTGGACTA
* *
1894513 TCGCAA--CGAATTTGGAATAAA
1 TCGCAACGCGAACTTGGACT--A
1894534 TCGCAACGCGAACTTGGACTA
1 TCGCAACGCGAACTTGGACTA
* *
1894555 TCGCAA--CGAATTTGGAATAAA
1 TCGCAACGCGAACTTGGACT--A
1894576 TCGCAACGCGAACTTGGACTA
1 TCGCAACGCGAACTTGGACTA
1894597 TCGCAACG
1 TCGCAACG
1894605 AATTTAGGTT
Statistics
Matches: 145, Mismatches: 19, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
19 29 0.20
21 87 0.60
23 29 0.20
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (21 bp):
TCGCAACGCGAACTTGGACTA
Found at i:1903440 original size:84 final size:84
Alignment explanation
Indices: 1903339--1903674 Score: 404
Period size: 84 Copynumber: 4.0 Consensus size: 84
1903329 GTAAGTTCAC
* * *
1903339 CCTCCTTTGCTTCAAGCTGCTTGGTACATCCTTCGA-CTGACATTTGGACTGAGCTGAGTTGTTT
1 CCTCCTTTGCTTCAAGCTGCTTGGTGCATCCTTCAATC-GACATTTGGACCGAGCTGAGTTGTTT
*
1903403 CTCTTTTGAATGGAGCTCTT
65 CTCTTTCGAATGGAGCTCTT
* * * *
1903423 CCTCCTTTGCTTCAAGCTGCTTGGTGCATCCTTCAATGGATATTAGGACCGAGCCGAGTTGTTTC
1 CCTCCTTTGCTTCAAGCTGCTTGGTGCATCCTTCAATCGACATTTGGACCGAGCTGAGTTGTTTC
*
1903488 TCTTTTGAATGGAGCTCTT
66 TCTTTCGAATGGAGCTCTT
* * ** * *
1903507 CCTCTTTTCCTTGGAGCTGCTTGGTGCATCCTTCAATCCATATTTGGACCGAGCTGAGTTGTTTC
1 CCTCCTTTGCTTCAAGCTGCTTGGTGCATCCTTCAATCGACATTTGGACCGAGCTGAGTTGTTTC
*
1903572 TCTTTCGAATGGAGCTTTT
66 TCTTTCGAATGGAGCTCTT
* * * ** * * ** *
1903591 GCTCCTTTGCTTCGAGCTCCTTGGTGCATCCTTGGATCAACATCTGGATTGAGCTGAATTGTTTC
1 CCTCCTTTGCTTCAAGCTGCTTGGTGCATCCTTCAATCGACATTTGGACCGAGCTGAGTTGTTTC
* *
1903656 TCATTCGAATGGAGTTCTT
66 TCTTTCGAATGGAGCTCTT
1903675 GACCACGTTC
Statistics
Matches: 218, Mismatches: 33, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
84 218 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.39
Consensus pattern (84 bp):
CCTCCTTTGCTTCAAGCTGCTTGGTGCATCCTTCAATCGACATTTGGACCGAGCTGAGTTGTTTC
TCTTTCGAATGGAGCTCTT
Found at i:1906847 original size:55 final size:54
Alignment explanation
Indices: 1906787--1906894 Score: 171
Period size: 55 Copynumber: 2.0 Consensus size: 54
1906777 TAACGGATTT
*
1906787 TTTAAGGTAGACACATAAAAGTATAATAGAAAAAAACATTAGACACGTATTTTTG
1 TTTAAGGTAAACACATAAAAGTATAATAG-AAAAAACATTAGACACGTATTTTTG
* * *
1906842 TTTAAGGTAAACACCTAAAAGTATGATAGAGAAAACATTAGACACGTATTTTT
1 TTTAAGGTAAACACATAAAAGTATAATAGAAAAAACATTAGACACGTATTTTT
1906895 AACAAAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
54 23 0.47
55 26 0.53
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (54 bp):
TTTAAGGTAAACACATAAAAGTATAATAGAAAAAACATTAGACACGTATTTTTG
Found at i:1922161 original size:37 final size:38
Alignment explanation
Indices: 1922081--1922163 Score: 93
Period size: 37 Copynumber: 2.2 Consensus size: 38
1922071 AACAAGTTAG
*
1922081 AAAATATTTATATATTTTCTTTAAAAAAATTAAATTCAT
1 AAAA-ATTTATATATTTTCTTTAAAAAAATTAAAATCAT
*
1922120 -AAAATTTATATAATTTT-TTT-ATAAAATTGAAAAT-AT
1 AAAAATTTATAT-ATTTTCTTTAAAAAAATT-AAAATCAT
1922156 AAAAATTT
1 AAAAATTT
1922164 TTAATGAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
36 9 0.23
37 22 0.56
38 8 0.21
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (38 bp):
AAAAATTTATATATTTTCTTTAAAAAAATTAAAATCAT
Found at i:1922593 original size:18 final size:19
Alignment explanation
Indices: 1922558--1922594 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
1922548 CACGGAATGT
1922558 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
1922578 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
1922595 GGATTACTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:1923542 original size:38 final size:38
Alignment explanation
Indices: 1923470--1923542 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
1923460 ATATTTTTGA
*
1923470 TTTTGTAAAAAAAATTATATAAATATTATGAATTTAAT
1 TTTTGTAAAAAAAATTATATAAATATTATCAATTTAAT
* * *
1923508 TTTTTTAAAGAAAA-TATATAAATATTTTACAATTT
1 TTTTGTAAAAAAAATTATATAAATATTAT-CAATTT
1923543 GTAATATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 13 0.43
38 17 0.57
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (38 bp):
TTTTGTAAAAAAAATTATATAAATATTATCAATTTAAT
Found at i:1941403 original size:2 final size:2
Alignment explanation
Indices: 1941396--1941435 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1941386 ATGGAACCGA
1941396 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1941436 CATGTATGGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1942075 original size:6 final size:6
Alignment explanation
Indices: 1942064--1942088 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1942054 CATCTCTTCG
1942064 CTTTGC CTTTGC CTTTGC CTTTGC C
1 CTTTGC CTTTGC CTTTGC CTTTGC C
1942089 GATCATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.36, G:0.16, T:0.48
Consensus pattern (6 bp):
CTTTGC
Found at i:1944205 original size:23 final size:22
Alignment explanation
Indices: 1944158--1944206 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
1944148 CTAAGATGAT
* *
1944158 TTTAATTTAAAATGTTATTATA
1 TTTAATTTAAAATGTCATTAAA
1944180 TTTAATTTAAAAAT-TCATATAAA
1 TTTAATTT-AAAATGTCAT-TAAA
1944203 TTTA
1 TTTA
1944207 TAATAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
TTTAATTTAAAATGTCATTAAA
Found at i:1962129 original size:19 final size:19
Alignment explanation
Indices: 1962105--1962143 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
1962095 TATACACTGT
1962105 TATTGGTGTATTTGATAAA
1 TATTGGTGTATTTGATAAA
1962124 TATTGGTGTATTTGATAAA
1 TATTGGTGTATTTGATAAA
1962143 T
1 T
1962144 CGATTCAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (19 bp):
TATTGGTGTATTTGATAAA
Found at i:1962164 original size:3 final size:3
Alignment explanation
Indices: 1962156--1962183 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1962146 ATTCAAGTTT
1962156 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1962184 GGTTAACTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1962474 original size:25 final size:25
Alignment explanation
Indices: 1962413--1962486 Score: 105
Period size: 25 Copynumber: 2.9 Consensus size: 25
1962403 CCATTCCTCA
*
1962413 TCTTTTTCTTCACTTTTCTT-ATTCTT
1 TCTTTCTCTTCACTTTTCTTCA--CTT
*
1962439 TCTTTCCCTTCACTTTTCTTCACTT
1 TCTTTCTCTTCACTTTTCTTCACTT
1962464 TCTTTCTCTTCACTTTTCTTCAC
1 TCTTTCTCTTCACTTTTCTTCAC
1962487 GTATCTGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
25 25 0.57
26 18 0.41
27 1 0.02
ACGTcount: A:0.08, C:0.31, G:0.00, T:0.61
Consensus pattern (25 bp):
TCTTTCTCTTCACTTTTCTTCACTT
Done.