Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008364.1 Hibiscus syriacus cultivar Beakdansim tig00111105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5892847
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 9 of 27
Found at i:1964042 original size:10 final size:10
Alignment explanation
Indices: 1964027--1964105 Score: 61
Period size: 10 Copynumber: 8.8 Consensus size: 10
1964017 AAGAGGAAAA
1964027 GAAGAAAAGT
1 GAAGAAAAGT
1964037 GAAGAAAAGT
1 GAAGAAAAGT
1964047 GAAG---AG-
1 GAAGAAAAGT
*
1964053 AAAG-AAAGT
1 GAAGAAAAGT
1964062 GAAGAAAAGT
1 GAAGAAAAGT
1964072 GAAGAGAAA-T
1 GAAGA-AAAGT
*
1964082 -AAG-GAA--
1 GAAGAAAAGT
1964088 GAAGAAAAGT
1 GAAGAAAAGT
1964098 GAAGAAAA
1 GAAGAAAA
1964106 AGAAGATGGA
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
6 3 0.05
7 7 0.12
8 4 0.07
9 6 0.11
10 33 0.59
11 3 0.05
ACGTcount: A:0.62, C:0.00, G:0.30, T:0.08
Consensus pattern (10 bp):
GAAGAAAAGT
Found at i:1964060 original size:25 final size:25
Alignment explanation
Indices: 1964032--1964109 Score: 111
Period size: 25 Copynumber: 3.1 Consensus size: 25
1964022 GAAAAGAAGA
1964032 AAAGTGAAGAAAAGTGAAGAGAAAG
1 AAAGTGAAGAAAAGTGAAGAGAAAG
*
1964057 AAAGTGAAGAAAAGTGAAGAGAAAT
1 AAAGTGAAGAAAAGTGAAGAGAAAG
* * *
1964082 AAGGAAGAAGAAAAGTGAAGAAAAAG
1 AAAG-TGAAGAAAAGTGAAGAGAAAG
1964108 AA
1 AA
1964110 GATGGAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 27 0.57
26 20 0.43
ACGTcount: A:0.63, C:0.00, G:0.29, T:0.08
Consensus pattern (25 bp):
AAAGTGAAGAAAAGTGAAGAGAAAG
Found at i:1965328 original size:5 final size:5
Alignment explanation
Indices: 1965318--1965347 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
1965308 AAAGGAAACA
1965318 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1965348 TTGTATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:1975768 original size:23 final size:23
Alignment explanation
Indices: 1975741--1975797 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
1975731 CCTTTTAGCA
1975741 GTGATAAGCACAG-TCTGAATATC
1 GTGATAAGCACAGCT-TGAATATC
1975764 GTGATAAGCACAGCTTGAATATC
1 GTGATAAGCACAGCTTGAATATC
1975787 GTGATAAGCAC
1 GTGATAAGCAC
1975798 CAGACCAGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.25
Consensus pattern (23 bp):
GTGATAAGCACAGCTTGAATATC
Found at i:1976184 original size:32 final size:32
Alignment explanation
Indices: 1976143--1976206 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
1976133 TTATATGAAA
1976143 AAACAAAAACATCCTGTATGCGTCACCGTGGT
1 AAACAAAAACATCCTGTATGCGTCACCGTGGT
*
1976175 AAACAAAAACATCCTGTATGCTTCACCGTGGT
1 AAACAAAAACATCCTGTATGCGTCACCGTGGT
1976207 CATACTTCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (32 bp):
AAACAAAAACATCCTGTATGCGTCACCGTGGT
Found at i:1989600 original size:13 final size:13
Alignment explanation
Indices: 1989582--1989606 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1989572 AATAAAACAT
1989582 AAATAATAATAGG
1 AAATAATAATAGG
1989595 AAATAATAATAG
1 AAATAATAATAG
1989607 TGTTACATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATAATAATAGG
Found at i:1994989 original size:22 final size:22
Alignment explanation
Indices: 1994963--1995026 Score: 119
Period size: 22 Copynumber: 2.9 Consensus size: 22
1994953 ATGAGTTAGC
1994963 TGTCTTCCAACAACACTAGCTT
1 TGTCTTCCAACAACACTAGCTT
1994985 TGTCTTCCAACAACACTAGCTT
1 TGTCTTCCAACAACACTAGCTT
*
1995007 TGTCTTCCAACTACACTAGC
1 TGTCTTCCAACAACACTAGC
1995027 CCGAACCTGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.31
Consensus pattern (22 bp):
TGTCTTCCAACAACACTAGCTT
Found at i:1995923 original size:32 final size:33
Alignment explanation
Indices: 1995887--1995948 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
1995877 AAGCATCCGA
*
1995887 AGAAG-AAATACGACACACTGGAATGAAAACAC
1 AGAAGAAAATACGACACACCGGAATGAAAACAC
1995919 AGAAGAAAATACGACACACCGGAATGAAAA
1 AGAAGAAAATACGACACACCGGAATGAAAA
1995949 AAAAAACACC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 5 0.18
33 23 0.82
ACGTcount: A:0.55, C:0.18, G:0.19, T:0.08
Consensus pattern (33 bp):
AGAAGAAAATACGACACACCGGAATGAAAACAC
Found at i:2002818 original size:32 final size:32
Alignment explanation
Indices: 2002730--2002822 Score: 141
Period size: 32 Copynumber: 2.9 Consensus size: 32
2002720 ATTCATTAGT
* *
2002730 TTACATTCTTACCGAAACTCTAACCTACTTTA
1 TTACATTCTTACCGAAACTCTGACATACTTTA
2002762 TTACATTCTTACCGAAACTCTGACATACTTTA
1 TTACATTCTTACCGAAACTCTGACATACTTTA
* **
2002794 TTACATTCTTACCAAAACAATGACATACT
1 TTACATTCTTACCGAAACTCTGACATACT
2002823 CAGGAACGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.35
Consensus pattern (32 bp):
TTACATTCTTACCGAAACTCTGACATACTTTA
Found at i:2004404 original size:39 final size:40
Alignment explanation
Indices: 2004361--2004456 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
2004351 ATTTGTTGGT
* * *
2004361 TTTAAGTTCTCACCAAACCTC-TAGCATAATTTACTATAG
1 TTTAAGTTCTTACCAAACCTCTTAACACAATTTACTATAG
* * * *
2004400 TTTAACTTCTTACTAAACCTCTTAACACAATTTGCTATAT
1 TTTAAGTTCTTACCAAACCTCTTAACACAATTTACTATAG
*
2004440 TTTAAGATCTTACCAAA
1 TTTAAGTTCTTACCAAA
2004457 TCTCAAGTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
39 18 0.39
40 28 0.61
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.39
Consensus pattern (40 bp):
TTTAAGTTCTTACCAAACCTCTTAACACAATTTACTATAG
Found at i:2005152 original size:25 final size:25
Alignment explanation
Indices: 2005089--2005153 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
2005079 CGAGCCGAGT
* *
2005089 CATTTGGGTCCGAGCCGAGTTGAGC
1 CATTTGGGTCCAAGTCGAGTTGAGC
*
2005114 CGTTTGGGTCCAAGTCGAGTTGAGC
1 CATTTGGGTCCAAGTCGAGTTGAGC
2005139 CATTTGGAGT-CAAGT
1 CATTTGG-GTCCAAGT
2005154 TGGTTCAACG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 33 0.94
26 2 0.06
ACGTcount: A:0.18, C:0.20, G:0.34, T:0.28
Consensus pattern (25 bp):
CATTTGGGTCCAAGTCGAGTTGAGC
Found at i:2024497 original size:20 final size:19
Alignment explanation
Indices: 2024472--2024524 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
2024462 GCGAAATAAA
2024472 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
2024492 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
2024512 AATCGCAACGCGA
1 AATCGCAACGCGA
2024525 ATATGAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 1 0.04
20 22 0.85
21 3 0.12
ACGTcount: A:0.34, C:0.32, G:0.19, T:0.15
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:2024535 original size:20 final size:20
Alignment explanation
Indices: 2024512--2024809 Score: 219
Period size: 20 Copynumber: 14.8 Consensus size: 20
2024502 CAGTTCCCAG
* *
2024512 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATACGTA
* **
2024532 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAATACGTA
*
2024552 AATCGCAACGCG-ATTC-TGA
1 AATCGCAACGCGAATACGT-A
* * * *
2024571 CTATCGCAACGAGTATCCGTAA
1 -AATCGCAACGCGAATACGT-A
* *
2024593 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
*
2024613 AATCGCAACAAC-AATACGTAA
1 AATCGCAAC-GCGAATACGT-A
* * *
2024634 AATCACAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
*
2024654 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGTA
* **
2024674 AATCGCAACACTTAT-CTGTA
1 AATCGCAACGCGAATAC-GTA
*
2024694 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGTA
* * *
2024714 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
*
2024734 AATCGCAACGAC-AATACATAA
1 AATCGCAACG-CGAATACGT-A
* * *
2024755 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGAATACGTA
*
2024775 AATCGCAATGCGAATACGTA
1 AATCGCAACGCGAATACGTA
*
2024795 AATCGCAATGCGAAT
1 AATCGCAACGCGAAT
2024810 CTATAAATCA
Statistics
Matches: 219, Mismatches: 47, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
18 1 0.00
19 3 0.01
20 161 0.74
21 52 0.24
22 2 0.01
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATACGTA
Found at i:2024621 original size:81 final size:81
Alignment explanation
Indices: 2024512--2024827 Score: 289
Period size: 81 Copynumber: 3.9 Consensus size: 81
2024502 CAGTTCCCAG
* ** * * * *
2024512 AATCGCAACGCGAATATGAAAATCGCAACGCGAACATATAAATCGCAACGCG-ATTC-TGACTAT
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT-A-AAT
* *
2024575 CGCAACGAGTATCCGTAA
64 CGCAACGAGAATACGTAA
* * * *
2024593 AATCGCAACGCGTATCCGTAAATCGCAACAAC-AATACGTAAAATCACAACGCGTATCCGTAAAT
1 AATCGCAACGCGTATCCGTAAATCGCAAC-GCGAACACAT-AAATCGCAACGCGTATCCGTAAAT
2024657 CGCAACGAGAATACGT-A
64 CGCAACGAGAATACGTAA
* * * * * * *
2024674 AATCGCAACACTTATCTGTAAATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAAATCG
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTAAATCG
* *
2024739 CAACGACAATACATAA
66 CAACGAGAATACGTAA
* * * * * * ** *
2024755 AATCGCAACGTGTATCCGTAAATCGCAATGCGAATACGTAAATCGCAATGCGAATCTATAAATCA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTAAATCG
2024820 CAACGAGA
66 CAACGAGA
2024828 TTCTGACTAT
Statistics
Matches: 196, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
80 36 0.18
81 126 0.64
82 29 0.15
83 4 0.02
84 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (81 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTAAATCG
CAACGAGAATACGTAA
Found at i:2024764 original size:121 final size:122
Alignment explanation
Indices: 2024573--2024802 Score: 372
Period size: 121 Copynumber: 1.9 Consensus size: 122
2024563 GATTCTGACT
* * *
2024573 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAAATCGCAACAACAATACGTAAAATC
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACAACAATACATAAAATC
2024638 ACAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACACTTATCTGTAA
66 ACAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACACTTATCTGTAA
* *
2024695 ATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAAATCGCAACGACAATACATAAAATC
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACAACAATACATAAAATC
* * * *
2024759 GCAACGTGTATCCGTAAATCGCAATGCGAATACGTAAATCGCAA
66 ACAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAA
2024803 TGCGAATCTA
Statistics
Matches: 99, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
121 83 0.84
122 16 0.16
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.20
Consensus pattern (122 bp):
ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACAACAATACATAAAATC
ACAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACACTTATCTGTAA
Found at i:2024817 original size:40 final size:40
Alignment explanation
Indices: 2024512--2024827 Score: 312
Period size: 40 Copynumber: 7.8 Consensus size: 40
2024502 CAGTTCCCAG
* ** * * * **
2024512 AATCGCAACGCGAATATGAAAATCGCAACGCGAACATATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* * * *
2024552 AATCGCAACGCG-ATTC-TGACTATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGTATCCGT-A-AATCGCAACGAGAATACGT-A
* *
2024593 AATCGCAACGCGTATCCGTAAATCGCAACAACAATACGTAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGT-A
*
2024634 AATCACAACGCGTATCCGTAAATCGCAACGAGAATACGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* * *
2024674 AATCGCAACACTTATCTGTAAATCGCAACGAGAATACGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* * *
2024714 AATCGCAATGCGTATCCGTAAATCGCAACGACAATACATAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGT-A
* * *
2024755 AATCGCAACGTGTATCCGTAAATCGCAATGCGAATACGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
* * ** *
2024795 AATCGCAATGCGAATCTATAAATCACAACGAGA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGA
2024828 TTCTGACTAT
Statistics
Matches: 227, Mismatches: 43, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
39 3 0.01
40 120 0.53
41 99 0.44
42 4 0.02
43 1 0.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (40 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
Found at i:2025710 original size:24 final size:24
Alignment explanation
Indices: 2025683--2025736 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
2025673 GTATTCGAAA
*
2025683 TTTGATCTTGGTCACTACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
2025707 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
2025731 TTTGAT
1 TTTGAT
2025737 GATTTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:2026490 original size:21 final size:21
Alignment explanation
Indices: 2026464--2026508 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
2026454 GATTTATGGG
* *
2026464 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
2026485 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
2026506 CAA
1 CAA
2026509 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:2028333 original size:23 final size:23
Alignment explanation
Indices: 2028300--2028359 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
2028290 ATCATTATAT
* *
2028300 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACAC
*
2028323 GGCACTTCGGTGTAATTCTACAC
1 GGCACTTCGGTGCAATTCTACAC
2028346 GGCACTTCGGTGCA
1 GGCACTTCGGTGCA
2028360 TTTATACGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACAC
Found at i:2031532 original size:21 final size:21
Alignment explanation
Indices: 2031506--2031550 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
2031496 GATTTCTGGG
* *
2031506 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
2031527 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
2031548 CAA
1 CAA
2031551 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:2033435 original size:23 final size:23
Alignment explanation
Indices: 2033368--2033425 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
2033358 ATCATTATAT
*
2033368 GGCACTACGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
2033391 GGCACTTCGGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTCTACGC
2033414 GGCACTTCGGTG
1 GGCACTTCGGTG
2033426 TATTTATACG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.17, C:0.29, G:0.29, T:0.24
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTCTACGC
Found at i:2036670 original size:33 final size:33
Alignment explanation
Indices: 2036613--2036800 Score: 205
Period size: 33 Copynumber: 5.5 Consensus size: 33
2036603 CTTAATGTCT
* **
2036613 ATCGCAATGCGGAAATTACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
* * *
2036647 ATCGCAATGCGAAATAAAAATCGCAACGTGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * *
2036680 ATCGCAACGCGAATATGAATATCGCAACGCGGAAATGA
1 ATCGCAATGCGAA-ATGAAAATCGCAA--C-GAGA-GA
2036718 CTATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 --ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
2036753 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
2036786 ATCGCAAAGCGAAAT
1 ATCGCAATGCGAAAT
2036801 AGTTTCGCAT
Statistics
Matches: 131, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
33 76 0.58
34 21 0.16
35 2 0.02
36 4 0.03
37 3 0.02
38 1 0.01
39 12 0.09
40 12 0.09
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:2036698 original size:20 final size:19
Alignment explanation
Indices: 2036646--2036780 Score: 110
Period size: 19 Copynumber: 7.5 Consensus size: 19
2036636 GCAACGAGAG
* *
2036646 AATCGCAATGCGAAATAAA
1 AATCGCAACGCGAAATGAA
2036665 AATCGCAA--CG---TGAA
1 AATCGCAACGCGAAATGAA
2036679 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAA-ATGAA
* *
2036699 TATCGCAACGCGGAAATGAC
1 AATCGCAACGC-GAAATGAA
* *
2036719 TATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
2036738 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
*
2036752 AATCGCAATGCGAAATGAA
1 AATCGCAACGCGAAATGAA
2036771 AATCGCAACG
1 AATCGCAACG
2036781 AGGGAATCGC
Statistics
Matches: 95, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
14 21 0.22
15 1 0.01
16 4 0.04
17 4 0.04
18 1 0.01
19 33 0.35
20 28 0.29
21 3 0.03
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:2036762 original size:106 final size:107
Alignment explanation
Indices: 2036606--2036798 Score: 298
Period size: 106 Copynumber: 1.8 Consensus size: 107
2036596 CAATCATCTT
* * **
2036606 AATGTCTATCGCAATGCGGAAATTACTATCGCAACGAGAGAATCGCAATGCGAAATAAAAATCGC
1 AATGACTATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATAAAAATCGC
* *
2036671 AACGTGAAAATCGCAACGCGAATATGAATATCGCAACGCGGA
66 AACGAGAAAATCGCAAAGCGAATATGAATATCGCAACGCGGA
*
2036713 AATGACTATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGC
1 AATGACTATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATAAAAATCGC
**
2036777 AACGAGGGAATCGCAAAGCGAA
66 AACGAGAAAATCGCAAAGCGAA
2036799 ATAGTTTCGC
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
106 61 0.79
107 16 0.21
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.16
Consensus pattern (107 bp):
AATGACTATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATAAAAATCGC
AACGAGAAAATCGCAAAGCGAATATGAATATCGCAACGCGGA
Found at i:2036840 original size:33 final size:33
Alignment explanation
Indices: 2036803--2036882 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
2036793 AGCGAAATAG
* * *
2036803 TTTCGCATTGCGATTTTGTCGTTGCGATTTTTA
1 TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
2036836 TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
*
2036869 TTTCGCATTACGAT
1 TTTCGCATTGCGAT
2036883 AGTCATTGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (33 bp):
TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
Found at i:2037008 original size:14 final size:14
Alignment explanation
Indices: 2036989--2037025 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
2036979 CATCAATTAA
2036989 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
2037003 ACAAATCATCTTTT
1 ACAAATCAACTTTT
2037017 ACAAATCAA
1 ACAAATCAA
2037026 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:2039003 original size:94 final size:94
Alignment explanation
Indices: 2038842--2039099 Score: 455
Period size: 94 Copynumber: 2.7 Consensus size: 94
2038832 TGAAGTAATG
* *
2038842 CAAATACTAACTTTACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
1 CAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAAT
*
2038907 TTACTTTCAACCAAAAGATAAAAC-AAAGA
66 TTACTTT-AACCAAAAGACAAAACAAAAGA
2038936 CAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAAT
1 CAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAAT
2039001 TTACTTTAACCAAAAGACAAAACAAAAGA
66 TTACTTTAACCAAAAGACAAAACAAAAGA
* *
2039030 CAAATACTAACTTCACAGTGTTAAAGAATAAACAGTTTAGCAGTATTGGCAGCAACCGAATAAAT
1 CAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAAT
2039095 TTACT
66 TTACT
2039100 AAGCAATCTA
Statistics
Matches: 158, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
93 15 0.09
94 143 0.91
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.23
Consensus pattern (94 bp):
CAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAAT
TTACTTTAACCAAAAGACAAAACAAAAGA
Found at i:2040796 original size:20 final size:19
Alignment explanation
Indices: 2040771--2040844 Score: 68
Period size: 19 Copynumber: 4.1 Consensus size: 19
2040761 TCTTTTGGTT
2040771 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
**
2040790 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
2040808 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
2040824 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
2040843 GA
1 GA
2040845 TTTTGGTTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
14 9 0.21
15 1 0.02
16 2 0.05
17 1 0.02
18 2 0.05
19 14 0.33
20 14 0.33
ACGTcount: A:0.43, C:0.20, G:0.24, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:2040880 original size:20 final size:20
Alignment explanation
Indices: 2040851--2040904 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
2040841 GCGATTTTGG
*
2040851 TTTCGCGTTGCGATAGTCAT
1 TTTCGTGTTGCGATAGTCAT
**
2040871 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATAGTCAT
*
2040891 TTTCATGTTGCGAT
1 TTTCGTGTTGCGAT
2040905 TTTAAGTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.13, C:0.17, G:0.22, T:0.48
Consensus pattern (20 bp):
TTTCGTGTTGCGATAGTCAT
Found at i:2040905 original size:20 final size:20
Alignment explanation
Indices: 2040857--2040907 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
2040847 TTGGTTTCGC
** *
2040857 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCAT
2040877 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTCAT
2040897 GTTGCGATTTT
1 GTTGCGATTTT
2040908 AAGTTTAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.14, C:0.14, G:0.22, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCAT
Found at i:2041379 original size:14 final size:14
Alignment explanation
Indices: 2041360--2041395 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
2041350 ATTGTTTAAT
2041360 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
2041374 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
2041388 TGATTTGT
1 TGATTTGT
2041396 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:2041526 original size:19 final size:18
Alignment explanation
Indices: 2041502--2041577 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 18
2041492 AAAAAGTACT
*
2041502 ATCGCAAGGCGAAATGAAA
1 ATCGCAACGCGAAAT-AAA
*
2041521 ATCGCAA--CG--ACAAA
1 ATCGCAACGCGAAATAAA
2041535 ATCGCAACGCGAAACTAAA
1 ATCGCAACGCGAAA-TAAA
2041554 ATCGCAACGCGAAACTAAA
1 ATCGCAACGCGAAA-TAAA
*
2041573 TTCGC
1 ATCGC
2041578 GTTGCGATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
14 10 0.20
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 33 0.67
ACGTcount: A:0.45, C:0.25, G:0.18, T:0.12
Consensus pattern (18 bp):
ATCGCAACGCGAAATAAA
Found at i:2041584 original size:19 final size:19
Alignment explanation
Indices: 2041532--2041577 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
2041522 TCGCAACGAC
2041532 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
2041551 AAAATCGCAACGCGAAACT
1 AAAATCGCAACGCGAAACT
*
2041570 AAATTCGC
1 AAAATCGC
2041578 GTTGCGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.46, C:0.26, G:0.15, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACT
Found at i:2041595 original size:19 final size:19
Alignment explanation
Indices: 2041573--2041723 Score: 71
Period size: 19 Copynumber: 8.7 Consensus size: 19
2041563 CGAAACTAAA
2041573 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
2041592 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
2041607 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* * *
2041625 TTTGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
2041639 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
2041658 TTCGCTTTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
2041673 -TCTCGTTGCGATTTTTAT
1 TTCGCGTTGCGATTTTCAT
* ** *
2041691 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
2041710 TTCGACGTTGCGAT
1 TTCG-CGTTGCGAT
2041724 AGACATTAAG
Statistics
Matches: 94, Mismatches: 22, Indels: 31
0.64 0.15 0.21
Matches are distributed among these distances:
14 28 0.30
16 5 0.05
17 6 0.06
19 47 0.50
20 8 0.09
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.44
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:2041619 original size:33 final size:32
Alignment explanation
Indices: 2041577--2041703 Score: 175
Period size: 33 Copynumber: 3.9 Consensus size: 32
2041567 ACTAAATTCG
2041577 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
* *
2041610 CGTTGCGATTTTCATTTTGCATTGCGAAATT-CG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
*
2041643 CGTTGCGATTTTCATTTCGCTTTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
*
2041676 CGTTGCGATTTTTATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
2041704 AGTAATTTCG
Statistics
Matches: 83, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
31 3 0.04
33 77 0.93
35 3 0.04
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:2041646 original size:66 final size:66
Alignment explanation
Indices: 2041570--2041702 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
2041560 ACGCGAAACT
*
2041570 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTTGCATTGC
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
2041635 G
66 G
* * *
2041636 AAATTCGCGTTGCGATTTTCATTTCGCTTTGCGATTCTCTCGTTGCGATTTTTATTTCGCATTGC
1 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
2041701 G
66 G
2041702 A
1 A
2041703 TAGTAATTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.44
Consensus pattern (66 bp):
AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:2042407 original size:20 final size:20
Alignment explanation
Indices: 2042382--2042419 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
2042372 AATAGTTTCT
2042382 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
2042402 GAAAATGAAAATCGCAAC
1 GAAAATGAAAATCGCAAC
2042420 GAGAGAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.18, G:0.16, T:0.11
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:2043012 original size:41 final size:41
Alignment explanation
Indices: 2042893--2043030 Score: 161
Period size: 41 Copynumber: 3.4 Consensus size: 41
2042883 CGCTTTGAAA
* * *
2042893 ATCGCATTGCGATTATGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
* * ** * * *
2042934 ATTGAGTTGCGAAATT-AAGTATCGAGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
2042974 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
2043015 ACCGCGTTGCGATTTT
1 ATCGCGTTGCGATTTT
2043031 CCAAATTCGC
Statistics
Matches: 77, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 32 0.42
41 45 0.58
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (41 bp):
ATCGCGTTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
Found at i:2043027 original size:20 final size:20
Alignment explanation
Indices: 2042913--2043026 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
2042903 GATTATGTAT
*
2042913 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* * * *
2042933 TATTGAGTTGCGAAATTAAG
1 TATCGCGTTGCGAAAGTCAG
*
2042953 TATCGAGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
** *
2042973 TATCGCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
*
2042994 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
2043014 TACCGCGTTGCGA
1 TATCGCGTTGCGA
2043027 TTTTCCAAAT
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
19 3 0.04
20 57 0.75
21 14 0.18
22 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:2043046 original size:41 final size:41
Alignment explanation
Indices: 2042920--2043048 Score: 111
Period size: 41 Copynumber: 3.2 Consensus size: 41
2042910 TATTATCTCG
** * ** *
2042920 TTGCGAAAGTCAGTATTGAGTTGCGAAATT-AAGTATCG-A
1 TTGCGAAAGTCAGTACCGCGTTGCGATTTTCAAATATCGCA
* ** * *
2042959 GTTGCGAAAGTCAGTATCGCGTTGCGATTTTGTATTATCGCG
1 -TTGCGAAAGTCAGTACCGCGTTGCGATTTTCAAATATCGCA
*
2043001 TTGCGATAGTCAGTACCGCGTTGCGATTTTCCAAAT-TCGCA
1 TTGCGAAAGTCAGTACCGCGTTGCGATTTT-CAAATATCGCA
2043042 TTGCGAA
1 TTGCGAA
2043049 TTGGGAAAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
40 26 0.36
41 44 0.61
42 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (41 bp):
TTGCGAAAGTCAGTACCGCGTTGCGATTTTCAAATATCGCA
Found at i:2043061 original size:21 final size:20
Alignment explanation
Indices: 2043037--2043089 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 20
2043027 TTTTCCAAAT
2043037 TCGCATTGCGAATTGGGAAAA
1 TCGCATTGCGAATT-GGAAAA
*
2043058 TCGCAATGCGAAATTGGAAAA
1 TCGCATTGCG-AATTGGAAAA
2043079 TCGCATTGCGA
1 TCGCATTGCGA
2043090 TAGTCATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.03
21 24 0.83
22 4 0.14
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (20 bp):
TCGCATTGCGAATTGGAAAA
Found at i:2047701 original size:15 final size:15
Alignment explanation
Indices: 2047681--2047712 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2047671 AATACAATGA
2047681 CATTTGATAATTTTT
1 CATTTGATAATTTTT
*
2047696 CATTTGGTAATTTTT
1 CATTTGATAATTTTT
2047711 CA
1 CA
2047713 AGATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.09, G:0.09, T:0.56
Consensus pattern (15 bp):
CATTTGATAATTTTT
Found at i:2049845 original size:25 final size:25
Alignment explanation
Indices: 2049811--2049860 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
2049801 CTCCGGCTAC
2049811 GACCTAATTGTAATGAACCGTAACA
1 GACCTAATTGTAATGAACCGTAACA
*
2049836 GACCTAATTGTAATGAATCGTAACA
1 GACCTAATTGTAATGAACCGTAACA
2049861 TTCTGATTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (25 bp):
GACCTAATTGTAATGAACCGTAACA
Found at i:2053631 original size:82 final size:84
Alignment explanation
Indices: 2053501--2053736 Score: 291
Period size: 82 Copynumber: 2.8 Consensus size: 84
2053491 CGACTTGAGT
* * * * * *
2053501 TTTAGTAGCGTTTTTAATTACAAATG-TGCTATAGACTCGTGTTTTAGTGTCATTTTTGTACATA
1 TTTAGTGGCGTTTTTAATTATAAACGCCGCTATAGACTCGTGTTTTAGTGGCATTTTTGTACAAA
*
2053565 CACTGCTAAAGACTCGTAC
66 CACCGCTAAAGACTCGTAC
* * *
2053584 TTTAGTGGCGTTTTT-A-TATAAACGCCGCTATAGACTCTTGTTTTAGTGGCAATTTTATACAAA
1 TTTAGTGGCGTTTTTAATTATAAACGCCGCTATAGACTCGTGTTTTAGTGGCATTTTTGTACAAA
* * * *
2053647 CGCCGCTATAGACTTGTGC
66 CACCGCTAAAGACTCGTAC
*
2053666 TTTAGTGGTGTTTTTAATTATAAACGCCGCTATAGACAT-GTGTTTTAGTGGCATTTTTGTACAA
1 TTTAGTGGCGTTTTTAATTATAAACGCCGCTATAGAC-TCGTGTTTTAGTGGCATTTTTGTACAA
*
2053730 ATACCGC
65 ACACCGC
2053737 AAATTTACAG
Statistics
Matches: 129, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
81 6 0.05
82 61 0.47
83 15 0.12
84 46 0.36
85 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (84 bp):
TTTAGTGGCGTTTTTAATTATAAACGCCGCTATAGACTCGTGTTTTAGTGGCATTTTTGTACAAA
CACCGCTAAAGACTCGTAC
Found at i:2053640 original size:124 final size:123
Alignment explanation
Indices: 2053443--2053672 Score: 275
Period size: 124 Copynumber: 1.9 Consensus size: 123
2053433 TATTCAAACG
* * * *
2053443 CTGCTATAGACTTGTACTTTAGTAGCGTTTTTATACAAACACCATTATCGACTTGAGTTTTAGTA
1 CTGCTAAAGACTCGTACTTTAGTAGCGTTTTTATACAAACACCACTATAGACTTGAGTTTTAGTA
** * * *
2053508 GCGTTTTTAATTACAAATG-TGCTATAGACTCGTGTTTTAGTGTCATTTTTGTACATACA
66 GCAATTTT-A-TACAAACGCCGCTATAGACTCGTGCTTTAGTGTCATTTTTGTACATACA
* * * * *
2053567 CTGCTAAAGACTCGTACTTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTCT-TGTTTTAGT
1 CTGCTAAAGACTCGTACTTTAGTAGCGTTTTTATACAAACACCACTATAGACT-TGAGTTTTAGT
* *
2053631 GGCAATTTTATACAAACGCCGCTATAGACTTGTGCTTTAGTG
65 AGCAATTTTATACAAACGCCGCTATAGACTCGTGCTTTAGTG
2053673 GTGTTTTTAA
Statistics
Matches: 88, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
122 7 0.08
123 21 0.24
124 59 0.67
125 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.40
Consensus pattern (123 bp):
CTGCTAAAGACTCGTACTTTAGTAGCGTTTTTATACAAACACCACTATAGACTTGAGTTTTAGTA
GCAATTTTATACAAACGCCGCTATAGACTCGTGCTTTAGTGTCATTTTTGTACATACA
Found at i:2053692 original size:43 final size:41
Alignment explanation
Indices: 2053419--2053723 Score: 211
Period size: 41 Copynumber: 7.4 Consensus size: 41
2053409 TAGTGGCGTT
* * * *
2053419 TTTAGTGGGGTATTTAT-TCAAACGCTGCTATAGACTTGTAC
1 TTTAGTGGCGTTTTTATAT-AAACGCCGCTATAGACTTGTGC
* * * ** * * *
2053460 TTTAGTAGCGTTTTTATACAAACACCATTATCGACTTGAGT
1 TTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTTGTGC
* * * * * *
2053501 TTTAGTAGCGTTTTTAATTACAAATG-TGCTATAGACTCGTGT
1 TTTAGTGGCGTTTTT-A-TATAAACGCCGCTATAGACTTGTGC
* * * * * * * * * *
2053543 TTTAGTGTCATTTTTGTACATACACTGCTAAAGACTCGTAC
1 TTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTTGTGC
*
2053584 TTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTCT-TGT
1 TTTAGTGGCGTTTTTATATAAACGCCGCTATAGACT-TGTGC
** *
2053625 TTTAGTGGCAATTTTATACAAACGCCGCTATAGACTTGTGC
1 TTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTTGTGC
* * *
2053666 TTTAGTGGTGTTTTTAATTATAAACGCCGCTATAGACATGTGT
1 TTTAGTGGCGTTTTT-A-TATAAACGCCGCTATAGACTTGTGC
*
2053709 TTTAGTGGCATTTTT
1 TTTAGTGGCGTTTTT
2053724 GTACAAATAC
Statistics
Matches: 203, Mismatches: 53, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
40 6 0.03
41 132 0.65
42 24 0.12
43 41 0.20
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (41 bp):
TTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTTGTGC
Found at i:2056647 original size:43 final size:42
Alignment explanation
Indices: 2056569--2056760 Score: 217
Period size: 43 Copynumber: 4.5 Consensus size: 42
2056559 AACTAGCGGT
* *
2056569 GTTTGTATCCAAAAACGCCGCTATAGATATGACCTTTTGCGGC
1 GTTTGT-TCCAAAAACGCCGCTATAGATCTGACCTTTTGCAGC
* * *
2056612 GTTTGTCCCAAAAACGCCGCTATAGATCTTAACCTTTTGCAAC
1 GTTTGTTCCAAAAACGCCGCTATAGATC-TGACCTTTTGCAGC
*
2056655 GTTTG-TCCAAAAACGCTGCTATAGATAC-GACCTTTTGCAGC
1 GTTTGTTCCAAAAACGCCGCTATAGAT-CTGACCTTTTGCAGC
* * * *
2056696 GTTTGTATCAAAAAACGCCGCTATAAATCTGACTTTTTGCGGC
1 GTTTGT-TCCAAAAACGCCGCTATAGATCTGACCTTTTGCAGC
* * *
2056739 ATTTGTTCCATAAACACCGCTA
1 GTTTGTTCCAAAAACGCCGCTA
2056761 ACTTTAGCGG
Statistics
Matches: 126, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
41 16 0.13
42 53 0.42
43 57 0.45
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
GTTTGTTCCAAAAACGCCGCTATAGATCTGACCTTTTGCAGC
Found at i:2056744 original size:84 final size:85
Alignment explanation
Indices: 2056570--2056760 Score: 233
Period size: 84 Copynumber: 2.2 Consensus size: 85
2056560 ACTAGCGGTG
* * *
2056570 TTTGTATCCAAAAACGCCGCTATAGATATGACCTTTTGCGGCGTTTGTCCCAAAAACGCCGCTAT
1 TTTGT-TCCAAAAACGCCGCTATAGATACGACCTTTTGCAGCGTTTGTCCAAAAAACGCCGCTAT
* *
2056635 AGATCTTAACCTTTTGCAACG
65 AAATCTTAACCTTTTGCAACA
* *
2056656 TTTG-TCCAAAAACGCTGCTATAGATACGACCTTTTGCAGCGTTTGTATCAAAAAACGCCGCTAT
1 TTTGTTCCAAAAACGCCGCTATAGATACGACCTTTTGCAGCGTTTGT-CCAAAAAACGCCGCTAT
* * **
2056720 AAATC-TGACTTTTTGCGGCA
65 AAATCTTAACCTTTTGCAACA
* *
2056740 TTTGTTCCATAAACACCGCTA
1 TTTGTTCCAAAAACGCCGCTA
2056761 ACTTTAGCGG
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
84 53 0.60
85 32 0.36
86 4 0.04
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (85 bp):
TTTGTTCCAAAAACGCCGCTATAGATACGACCTTTTGCAGCGTTTGTCCAAAAAACGCCGCTATA
AATCTTAACCTTTTGCAACA
Found at i:2059407 original size:19 final size:18
Alignment explanation
Indices: 2059383--2059428 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
2059373 ATTCCATTAG
2059383 TGAATATTTTTTAAAATT
1 TGAATATTTTTTAAAATT
*
2059401 CTGAATATATTTTTTAAATT
1 -TGAATAT-TTTTTAAAATT
2059421 T-AATATTT
1 TGAATATTT
2059429 ACAAATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 2 0.08
18 5 0.20
19 8 0.32
20 10 0.40
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (18 bp):
TGAATATTTTTTAAAATT
Found at i:2060105 original size:2 final size:2
Alignment explanation
Indices: 2060098--2060124 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2060088 GCTATAAAAT
2060098 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2060125 TGGTACATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2061938 original size:22 final size:22
Alignment explanation
Indices: 2061912--2061959 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
2061902 TTTACCCTTT
**
2061912 ATTTTAAATAATTTATCTTTAA
1 ATTTTAAATAATTTATAATTAA
*
2061934 ATTTTAACTAATTTATAATTAA
1 ATTTTAAATAATTTATAATTAA
2061956 ATTT
1 ATTT
2061960 AGAATTCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTTTAAATAATTTATAATTAA
Found at i:2061981 original size:16 final size:16
Alignment explanation
Indices: 2061953--2061996 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
2061943 AATTTATAAT
2061953 TAAATTTAGAATTCTTTA
1 TAAATTTA-AATT-TTTA
2061971 -AAATTTAAATTTTTA
1 TAAATTTAAATTTTTA
2061986 TAAA-TTAAATT
1 TAAATTTAAATT
2061997 AATGGTGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 11 0.44
16 7 0.28
17 7 0.28
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (16 bp):
TAAATTTAAATTTTTA
Found at i:2062388 original size:20 final size:20
Alignment explanation
Indices: 2062351--2062388 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2062341 AAGGAGGATG
*
2062351 AACTAAAATTCCAGGGGGCA
1 AACTAAAATTCCAAGGGGCA
*
2062371 AACTAAAATTCTAAGGGG
1 AACTAAAATTCCAAGGGG
2062389 TGAAACATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (20 bp):
AACTAAAATTCCAAGGGGCA
Found at i:2070100 original size:42 final size:42
Alignment explanation
Indices: 2070020--2070100 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
2070010 TTTTCTCTGT
* * * *
2070020 TTTAATTTTAATTTTTATATTTATTTTATATTTTTAAAATGA
1 TTTAATTTTAATTTTTATATTTATATAAAATTTATAAAATGA
*
2070062 TTTAA-TTTAATTTTTAATGTTTATATAAAATTTATAAAA
1 TTTAATTTTAATTTTT-ATATTTATATAAAATTTATAAAA
2070101 GTATTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 10 0.30
42 23 0.70
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.59
Consensus pattern (42 bp):
TTTAATTTTAATTTTTATATTTATATAAAATTTATAAAATGA
Found at i:2070719 original size:14 final size:14
Alignment explanation
Indices: 2070696--2070731 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
2070686 ACCAAATAAT
*
2070696 TTTATATTCGTTCG
1 TTTATGTTCGTTCG
2070710 TTTATGTTCGTTCG
1 TTTATGTTCGTTCG
*
2070724 TTTGTGTT
1 TTTATGTT
2070732 TGTTTACGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.08, C:0.11, G:0.19, T:0.61
Consensus pattern (14 bp):
TTTATGTTCGTTCG
Found at i:2070767 original size:17 final size:18
Alignment explanation
Indices: 2070730--2070767 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
2070720 TTCGTTTGTG
2070730 TTTGTTTACGTATATTCA
1 TTTGTTTACGTATATTCA
* *
2070748 TTTGTTTTCGTTTA-TCA
1 TTTGTTTACGTATATTCA
2070765 TTT
1 TTT
2070768 AAATAGACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.63
Consensus pattern (18 bp):
TTTGTTTACGTATATTCA
Found at i:2075616 original size:43 final size:43
Alignment explanation
Indices: 2075503--2075711 Score: 179
Period size: 43 Copynumber: 4.9 Consensus size: 43
2075493 TGTTAACGAA
** * *
2075503 AAACGCCGCAATAGGTGACGATATATAGCGGCG-TTTG-TTAAAA
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTGCTT--AC
* *
2075546 AAACGCCGCAGTAGGTATTGATATTTAGCGGCGTTTTGCTTAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTGCTTAC
* * * **
2075589 AAACGCCGCAATAGGTGTTGTTGTTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTGCTTAC
* * * * **
2075632 AAACGTCGCAATAGGTGTTGTTGTTTAGCGGCGTTTTTCAAAC
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTGCTTAC
* * ** * *
2075675 AAGCGCCGCAATAAGCATTGAGATTTAGCGGTGTTTT
1 AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTT
2075712 TATCGAAAAC
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
43 133 0.96
44 4 0.03
45 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
AAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTTGCTTAC
Found at i:2079709 original size:83 final size:82
Alignment explanation
Indices: 2079566--2079885 Score: 396
Period size: 83 Copynumber: 3.9 Consensus size: 82
2079556 TTCAAACAAC
* * * *
2079566 TGCGGCGTTTATTGAAAAAACGCCACTATAGGTAAATACTATTACGGCGTTTGTATAAAAACGCC
1 TGCGGCGTTTATTGAAAAAACGCCACTATAGATGAA-CCTATTGCGGCGTTTGTATAAAAACGCC
*
2079631 GCCAAAGTTA-TAATCTAT
65 GCTAAAG-TACTAATCTAT
* * * *
2079649 TGCAGCGTTTATTGAAAAAACGCCACTATCGGTGAACCCTATTGCAGCGTTTGTATAAAAACGCC
1 TGCGGCGTTTATTGAAAAAACGCCACTATAGATGAA-CCTATTGCGGCGTTTGTATAAAAACGCC
2079714 GCTAAAGTACTAATCTAT
65 GCTAAAGTACTAATCTAT
* * * *
2079732 TGCGGCATTTATTGAAAAAACGCCACTATAGAT-AGACCTATTGTGGCGTTTATATAAAAAAGCC
1 TGCGGCGTTTATTGAAAAAACGCCACTATAGATGA-ACCTATTGCGGCGTTTGTATAAAAACGCC
* *
2079796 GCTAAAGTACCACA-CTGT
65 GCTAAAGTACTA-ATCTAT
* * *
2079814 TGCGGCGTTTTTTTAAAAAACGCCACTATAGATGAACCTATTGCGGCATTTGTA-AAGAAACGCC
1 TGCGGCGTTTATTGAAAAAACGCCACTATAGATGAACCTATTGCGGCGTTTGTATAA-AAACGCC
2079878 GCTAAAGT
65 GCTAAAGT
2079886 TACCATTTTG
Statistics
Matches: 207, Mismatches: 25, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
81 2 0.01
82 101 0.49
83 104 0.50
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (82 bp):
TGCGGCGTTTATTGAAAAAACGCCACTATAGATGAACCTATTGCGGCGTTTGTATAAAAACGCCG
CTAAAGTACTAATCTAT
Found at i:2079858 original size:41 final size:40
Alignment explanation
Indices: 2079566--2079860 Score: 193
Period size: 41 Copynumber: 7.2 Consensus size: 40
2079556 TTCAAACAAC
* * *
2079566 TGCGGCGTTTATTGAAAAAACGCCACTATAGGTAAATACTAT
1 TGCGGCGTTTATTTAAAAAACGCCACTATAGAT-AA-CCTAT
* * * * * * *
2079608 TACGGCGTTTGTAT-AAAAACGCCGCCAAAGTTATAATCTAT
1 TGCGGCGTTTATTTAAAAAACGCCACTATAG--ATAACCTAT
* * * *
2079649 TGCAGCGTTTATTGAAAAAACGCCACTATCGGTGAACCCTAT
1 TGCGGCGTTTATTTAAAAAACGCCACTATAGAT-AA-CCTAT
* * * * * *
2079691 TGCAGCGTTTGTAT-AAAAACGCCGCTAAAGTACTAATCTAT
1 TGCGGCGTTTATTTAAAAAACGCCACTATAG-A-TAACCTAT
* *
2079732 TGCGGCATTTATTGAAAAAACGCCACTATAGATAGACCTAT
1 TGCGGCGTTTATTTAAAAAACGCCACTATAGATA-ACCTAT
* * * * *
2079773 TGTGGCGTTTATATAAAAAA-GCCGCTAAAG-TACCACACTGT
1 TGCGGCGTTTATTTAAAAAACGCCACTATAGATA--AC-CTAT
*
2079814 TGCGGCGTTTTTTTAAAAAACGCCACTATAGATGAACCTAT
1 TGCGGCGTTTATTTAAAAAACGCCACTATAGAT-AACCTAT
2079855 TGCGGC
1 TGCGGC
2079861 ATTTGTAAAG
Statistics
Matches: 189, Mismatches: 50, Indels: 29
0.71 0.19 0.11
Matches are distributed among these distances:
39 2 0.01
40 13 0.07
41 105 0.56
42 65 0.34
43 3 0.02
44 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (40 bp):
TGCGGCGTTTATTTAAAAAACGCCACTATAGATAACCTAT
Found at i:2082254 original size:16 final size:17
Alignment explanation
Indices: 2082229--2082261 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2082219 GGTCCTCTAA
2082229 TAAAATTAATTGTTAAT
1 TAAAATTAATTGTTAAT
*
2082246 TAAAA-TAATTTTTAAT
1 TAAAATTAATTGTTAAT
2082262 CAAATCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (17 bp):
TAAAATTAATTGTTAAT
Found at i:2087654 original size:9 final size:9
Alignment explanation
Indices: 2087640--2087664 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
2087630 TTTTATAACT
2087640 CTCTCTCAC
1 CTCTCTCAC
2087649 CTCTCTCAC
1 CTCTCTCAC
2087658 CTCTCTC
1 CTCTCTC
2087665 TATTTTCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.56, G:0.00, T:0.36
Consensus pattern (9 bp):
CTCTCTCAC
Found at i:2088480 original size:3 final size:3
Alignment explanation
Indices: 2088472--2088546 Score: 111
Period size: 3 Copynumber: 25.7 Consensus size: 3
2088462 GGCCTGTTTG
2088472 TAA TAA TAA TAA TAAA TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
2088517 TAA T-A TAA -AA TAA TAA TAA AAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
2088547 GAAAATGGAG
Statistics
Matches: 66, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
2 6 0.09
3 57 0.86
4 3 0.05
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:2088562 original size:25 final size:25
Alignment explanation
Indices: 2088476--2088565 Score: 78
Period size: 25 Copynumber: 3.6 Consensus size: 25
2088466 TGTTTGTAAT
* *
2088476 AATAATAATAAATAA-AATAATA-AT
1 AATAAGAATAAA-AATAATAATAGAA
* * *
2088500 AATAATAATAATAATAATAATATAA
1 AATAAGAATAAAAATAATAATAGAA
*
2088525 AATAATAATAAAAATAATAATAGAA
1 AATAAGAATAAAAATAATAATAGAA
*
2088550 AATGGAGAA-AAAAATA
1 AAT-AAGAATAAAAATA
2088566 GTATCTTCAG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
23 2 0.04
24 18 0.32
25 34 0.60
26 3 0.05
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (25 bp):
AATAAGAATAAAAATAATAATAGAA
Found at i:2089230 original size:113 final size:111
Alignment explanation
Indices: 2088894--2089901 Score: 1334
Period size: 113 Copynumber: 9.0 Consensus size: 111
2088884 GAGTCATGAA
* * * *
2088894 AAAAGTTGAACAAAATT-TTCTCATTATGAACTTCTTCTTCC-TCTTCAAATAAATTCTTATCAT
1 AAAAGTTGAAC-AAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
2088957 TATGAACTT-TCTGGAAAAGTTGATCCATCGAATGATGAATTCAAAC
65 TATGAACTTACCTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
* ** * *
2089003 AAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTT-CTTCAGCTGACGAGTTCTTCTCAT
1 -AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
2089067 TATAAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
65 TATGAACT-TACCTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
*
2089115 AAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
2089180 TATGAACTTTCTCTGGAAAAGCTGATCCATCGAATGATGAATTCAAAC
65 TATGAACTTAC-CTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
* *
2089228 AAAAGGTCGAACGAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
2089293 TATGAACTTTCTCTGGAAAAGTTGATCCATCGAATGATGAATTCAAAC
65 TATGAACTTAC-CTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
* *
2089341 AAAAAGTTGAACAAATTCTTCTCATCATGAA--T-TTCTT-CTTCTTCAGATGACGAGTTTTTCT
1 -AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCT
* *
2089402 CATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAAC
62 CATTATGAACT-TACCTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
* *
2089453 AAAAGGTTGAATAAATTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
2089518 TATGAACTTGACCTGGTAATGTTGATCCATCGAATGATGAATTC-AAC
65 TATGAACTT-ACCTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
* *
2089565 TGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 --AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
2089630 TTATGAACTTGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGC
64 TTATGAACTT-ACCTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
*
2089679 GAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 -AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * * *
2089744 TATGAACTCGACCT-GAATTGTTAATCCATTGAATGATGGATTCAAGAG
65 TATGAACT-TACCTGGAAATGTTGATCCATCGAATGATGAATTCAA-AC
* *
2089792 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTGTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * *
2089857 ATGAACTCGACCTGGAAATGTTAATCCATTGAATGATGGATTCAA
66 ATGAACT-TACCTGGAAATGTTGATCCATCGAATGATGAATTCAA
2089902 CTTTGCTAAA
Statistics
Matches: 817, Mismatches: 57, Indels: 45
0.89 0.06 0.05
Matches are distributed among these distances:
109 17 0.02
110 58 0.07
111 10 0.01
112 251 0.31
113 454 0.56
114 11 0.01
115 5 0.01
116 11 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (111 bp):
AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTACCTGGAAATGTTGATCCATCGAATGATGAATTCAAAC
Found at i:2089247 original size:225 final size:222
Alignment explanation
Indices: 2088894--2089901 Score: 1318
Period size: 225 Copynumber: 4.5 Consensus size: 222
2088884 GAGTCATGAA
* * * *
2088894 AAAAGTTGAACAAAATT-TTCTCATTATGAACTTCTTCTTCC-TCTTCAAATAAATTCTTATCAT
1 AAAAGTTGAAC-AAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
2088957 TATGAACTT-TCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTC
65 TATGAACTTACCTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAGGTTGAACAAATTC
* ** * * *
2089021 TTCTCATTATGAATTTCTTCTT-CTTCAGCTGACGAGTTCTTCTCATTATAAACTCTACCTGGCA
130 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TACCTGG-A
*
2089085 ATGTTGATCCATCAAATGATGAATTCAAAC
193 ATGTTGATCCATCGAATGATGAATTCAAAC
*
2089115 AAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAA-GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
2089180 TATGAACTTTCTCTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAGGTCGAACGAATT
65 TATGAACTTAC-CTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAGGTTGAACAAATT
*
2089245 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
129 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTAC-CTGG-
*
2089310 AAAGTTGATCCATCGAATGATGAATTCAAAC
192 AATGTTGATCCATCGAATGATGAATTCAAAC
* *
2089341 AAAAAGTTGAACAAATTCTTCTCATCATGAA--T-TTCTT-CTTCTTCAGATGACGAGTTTTTCT
1 -AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCT
* * * * *
2089402 CATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAATAA
62 CATTATGAACT-TACCTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAGGTTGAACAA
*
2089467 ATTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGACCT
126 ATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTT-ACCT
2089532 GGTAATGTTGATCCATCGAATGATGAATTC-AAC
190 GG-AATGTTGATCCATCGAATGATGAATTCAAAC
* *
2089565 TGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 --AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * *
2089630 TTATGAACTTGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAA-GTTGAACAAG
64 TTATGAACTT-ACCTGGAAAAGCTGATCCATCGAATGATGAATTCAAAC-AAAAGGTTGAACAAA
*
2089694 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCT-
127 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT-TACCTG
* * * *
2089758 GAATTGTTAATCCATTGAATGATGGATTCAAGAG
191 GAA-TGTTGATCCATCGAATGATGAATTCAA-AC
* *
2089792 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTGTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * * *
2089857 ATGAACTCGACCTGGAAATGTTAATCCATTGAATGATGGATTCAA
66 ATGAACT-TACCTGGAAAAGCTGATCCATCGAATGATGAATTCAA
2089902 CTTTGCTAAA
Statistics
Matches: 703, Mismatches: 59, Indels: 46
0.87 0.07 0.06
Matches are distributed among these distances:
221 9 0.01
222 41 0.06
223 32 0.05
224 6 0.01
225 378 0.54
226 211 0.30
227 10 0.01
228 5 0.01
229 11 0.02
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (222 bp):
AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTACCTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAGGTTGAACAAATTCT
TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTACCTGGAATG
TTGATCCATCGAATGATGAATTCAAAC
Found at i:2089320 original size:338 final size:336
Alignment explanation
Indices: 2088771--2089901 Score: 1466
Period size: 338 Copynumber: 3.3 Consensus size: 336
2088761 TGTAATTTGG
* * *
2088771 AAAAGGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTTAGATAAGTTCTTCTCA
1 AAAA-GGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
2088835 TTATGAAC-TT-TCTGGAAAAGTTGATGCTGGTCTATCTCATTCTATGAT-AGAGTCATGAA-AA
65 TTATGAACTTTCTCTGGAAAAGTTGAT-C----C-ATC-GA----ATGATGA-ATTCA--AACAA
* * * *
2088896 AAGTTGAACAAAATT-TTCTCATTATGAACTTCTTCTTCC-TCTTCAAATAAATTCTTATCATTA
116 AAGTTGAAC--AATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
2088959 TGAAC-TT-TCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTCT
179 TGAACTTTCTCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTCT
*
2089022 TCTCATTATGAATTTCTTCTTCTTCAGCTGACGAGTTCTTCTCATTATAAACTCTACCTGGCAAT
244 TCTCATTATGAATTTCTTCTTCTTCAGCTGACGAGTTCTTCTCATTATGAACTCTACCTGGCAAT
2089087 GTTGATCCATCAAATGATGAATTCAAAC
309 GTTGATCCATCAAATGATGAATTCAAAC
*
2089115 AAAAGGTCGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
2089180 TATGAACTTTCTCTGGAAAAGCTGATCCATCGAATGATGAATTCAAACAAAAGGTCGAACGAATT
66 TATGAACTTTCTCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAA-GTTGAAC-AATT
2089245 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
129 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGA
*
2089310 AAAGTTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATCATGAATTT
194 AAAGTTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAATTT
* *
2089375 CTTCTTCTTCAGATGACGAGTTTTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAAT
259 CTTCTTCTTCAGCTGACGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAAT
2089440 GATGAATTCAAAC
324 GATGAATTCAAAC
* *
2089453 AAAAGGTTGAATAAATTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
2089518 TATGAACTTGAC-CTGGTAATGTTGATCCATCGAATGATGAATTC-AACTGAAAAGTTGAACAAG
66 TATGAACTT-TCTCTGGAAAAGTTGATCCATCGAATGATGAATTCAAAC--AAAAGTTGAACAA-
* *
2089581 TTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTGAC-CT
127 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTT-TCTCT
* * * * * *
2089645 GGTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAA
191 GGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAA
* ** * * * *
2089710 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCT-G-AATTGTTAATCCAT
256 TTTCTTCTT-CTTCAGCTGACGAGTTCTTCTCATTATGAACTCTACCTGGCAA-TGTTGATCCAT
** * *
2089773 TGAATGATGGATTCAAGAG
319 CAAATGATGAATTCAA-AC
* *
2089792 AAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTGTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
** * * * *
2089856 TATGAACTCGAC-CTGGAAATGTTAATCCATTGAATGATGGATTCAA
66 TATGAACT-TTCTCTGGAAAAGTTGATCCATCGAATGATGAATTCAA
2089902 CTTTGCTAAA
Statistics
Matches: 711, Mismatches: 56, Indels: 45
0.88 0.07 0.06
Matches are distributed among these distances:
333 2 0.00
334 8 0.01
335 39 0.05
336 26 0.04
337 9 0.01
338 495 0.70
339 44 0.06
340 3 0.00
341 1 0.00
343 36 0.05
344 31 0.04
345 3 0.00
346 14 0.02
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (336 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGTTGATCCATCGAATGATGAATTCAAACAAAAGTTGAACAATTCT
TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
AGTTGATCCATCGAATGATGAATTCAAACAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCT
TCTTCTTCAGCTGACGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGA
TGAATTCAAAC
Found at i:2090314 original size:22 final size:22
Alignment explanation
Indices: 2090289--2090343 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
2090279 GATAAAGCTT
* *
2090289 TCATATTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
* *
2090311 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
2090333 TCATCTTTGAA
1 TCATCTTTGAA
2090344 GAGTGTAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:2090813 original size:50 final size:50
Alignment explanation
Indices: 2090715--2090814 Score: 112
Period size: 50 Copynumber: 2.0 Consensus size: 50
2090705 TTACTGGTTC
* * ** * **
2090715 GTAAAACATTTGACAATACATTCATCTTTTCCTGTGGTTTCTGTCCAGAT
1 GTAAAACATTTGAAAACACATTCATCTTTTCCTACGGTTCCTACCCAGAT
*
2090765 GTAAAACATTTGAAAACACATTCAT-TCTTTCTTACGGTTCCTACCCAGAT
1 GTAAAACATTTGAAAACACATTCATCT-TTTCCTACGGTTCCTACCCAGAT
2090815 TTCTGGTCAG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
49 1 0.02
50 40 0.98
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (50 bp):
GTAAAACATTTGAAAACACATTCATCTTTTCCTACGGTTCCTACCCAGAT
Found at i:2093291 original size:114 final size:114
Alignment explanation
Indices: 2093091--2093310 Score: 352
Period size: 114 Copynumber: 1.9 Consensus size: 114
2093081 GATCATGCAG
* * ** *
2093091 TTCATCTTTCAATTTCAATGATTAGTTCTGGGGTTCCTACTGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAATCTCAATGATTAGTTCTGGGGTTCATACCAAACCAGATCAAATAACTCAAAGA
*
2093156 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCCTATTTCTACTATGAGCAAA
* *
2093205 TTCATCTTTCAAATCT-AATGATTGGTTTTGGGGTTCATACCAAACCAGATCAAATAACTCAAAG
1 TTCATCTTTC-AATCTCAATGATTAGTTCTGGGGTTCATACCAAACCAGATCAAATAACTCAAAG
2093269 AACACTTCCAGAAGATGCTATTGGGTCTCCCTATTTCTACTA
65 AACACTTCCAGAAGATGCTATTGGGTCTCCCTATTTCTACTA
2093311 CGAGAACATG
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
114 93 0.96
115 4 0.04
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAATCTCAATGATTAGTTCTGGGGTTCATACCAAACCAGATCAAATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCCTATTTCTACTATGAGCAAA
Found at i:2095598 original size:7 final size:7
Alignment explanation
Indices: 2095595--2095627 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
2095585 ATTTTTTCTT
2095595 TTTTTTC
1 TTTTTTC
2095602 TTTTTTC
1 TTTTTTC
2095609 TTTTTTC
1 TTTTTTC
*
2095616 -CTTTTC
1 TTTTTTC
2095622 TTTTTT
1 TTTTTT
2095628 TTATTTGTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:2095628 original size:14 final size:14
Alignment explanation
Indices: 2095588--2095628 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
2095578 TAATTCAATT
*
2095588 TTTTCTTTTTTTTC
1 TTTTCTTTTTTTCC
*
2095602 TTTTTTCTTTTTTCC
1 TTTTCT-TTTTTTCC
2095617 TTTTCTTTTTTT
1 TTTTCTTTTTTT
2095629 TATTTGTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTTTTCC
Found at i:2098977 original size:14 final size:14
Alignment explanation
Indices: 2098939--2098992 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
2098929 CATAAAAATA
* *
2098939 CAAATGCAAAGATG
1 CAAATGTAAATATG
2098953 CCAAATGTAAATATG
1 -CAAATGTAAATATG
* *
2098968 CAATTGTAAACATG
1 CAAATGTAAATATG
*
2098982 TAAATGTAAAT
1 CAAATGTAAAT
2098993 TATTTAAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (14 bp):
CAAATGTAAATATG
Found at i:2101409 original size:3 final size:3
Alignment explanation
Indices: 2101401--2101442 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
2101391 TTTATGGCTA
*
2101401 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
2101443 TAAAAGTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:2101501 original size:20 final size:20
Alignment explanation
Indices: 2101434--2101501 Score: 50
Period size: 20 Copynumber: 3.4 Consensus size: 20
2101424 TAATAATAGT
*
2101434 AATAATAATTAAAAGTA-AACA
1 AATAA-AATTAAAA-TATAATA
* * *
2101455 TATAAAATTAACATATAATG
1 AATAAAATTAAAATATAATA
*
2101475 AACAAAATTAAAACTAT-ATA
1 AATAAAATTAAAA-TATAATA
2101495 AATAAAA
1 AATAAAA
2101502 ATTGAAATTA
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
19 2 0.06
20 27 0.75
21 7 0.19
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (20 bp):
AATAAAATTAAAATATAATA
Found at i:2102818 original size:3 final size:3
Alignment explanation
Indices: 2102810--2102893 Score: 109
Period size: 3 Copynumber: 27.7 Consensus size: 3
2102800 GGCCTGTTTG
**
2102810 TAA TAA TAA TAA TTT TAA TAA TAA TAAA TAA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
2102855 TAA TATA TAA -AA TAA TAA TAA TAA TAAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TA
2102894 GAAAATTGAG
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
2 4 0.06
3 59 0.82
4 9 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:2109986 original size:22 final size:22
Alignment explanation
Indices: 2109958--2110011 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
2109948 TAAATTAGTC
2109958 CATATTTCATTTAGTAGAAGTA
1 CATATTTCATTTAGTAGAAGTA
2109980 CATATTTCATTTAGTAGAAGTA
1 CATATTTCATTTAGTAGAAGTA
2110002 CATATTTCAT
1 CATATTTCAT
2110012 ATATAATCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (22 bp):
CATATTTCATTTAGTAGAAGTA
Found at i:2113186 original size:23 final size:24
Alignment explanation
Indices: 2113142--2113188 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
2113132 ATACATTGAC
*
2113142 AAATTATATAAATACAATAACATT
1 AAATTATATAAATACAAAAACATT
2113166 AAATTAT-TAGAA-ACAAAAACATT
1 AAATTATATA-AATACAAAAACATT
2113189 CATTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (24 bp):
AAATTATATAAATACAAAAACATT
Found at i:2114639 original size:46 final size:46
Alignment explanation
Indices: 2114572--2114664 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
2114562 AAACCACATG
2114572 GCAGGGCCAAGATTCATTGCCTGGCAGGAATCATGCATCCGAAACC
1 GCAGGGCCAAGATTCATTGCCTGGCAGGAATCATGCATCCGAAACC
*
2114618 GCAGGGCCAAGATTCATTGCCTGGCAGGAATCATGCCTCCGAAACC
1 GCAGGGCCAAGATTCATTGCCTGGCAGGAATCATGCATCCGAAACC
2114664 G
1 G
2114665 TATTATCTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.17
Consensus pattern (46 bp):
GCAGGGCCAAGATTCATTGCCTGGCAGGAATCATGCATCCGAAACC
Found at i:2115182 original size:36 final size:36
Alignment explanation
Indices: 2115142--2115213 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
2115132 GGTTGCCTTC
2115142 CCATTTTTTATATTTTATTTTGATTAACCTGAATTG
1 CCATTTTTTATATTTTATTTTGATTAACCTGAATTG
*
2115178 CCATTTTTTATATTTTATTTTGATTAATCTGAATTG
1 CCATTTTTTATATTTTATTTTGATTAACCTGAATTG
2115214 ACCTACGTCG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.57
Consensus pattern (36 bp):
CCATTTTTTATATTTTATTTTGATTAACCTGAATTG
Found at i:2115859 original size:15 final size:16
Alignment explanation
Indices: 2115841--2115873 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
2115831 TAGGATGACG
*
2115841 AATTTTA-AGTTATAA
1 AATTTTAGAGTGATAA
2115856 AATTTTAGAGTGATAA
1 AATTTTAGAGTGATAA
2115872 AA
1 AA
2115874 ACATATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (16 bp):
AATTTTAGAGTGATAA
Found at i:2116877 original size:18 final size:19
Alignment explanation
Indices: 2116846--2116888 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
2116836 TACTAGTACT
2116846 TTTTATAATAATTTT-ACCA
1 TTTT-TAATAATTTTGACCA
* *
2116865 TTTTTAATCATTTTGATCA
1 TTTTTAATAATTTTGACCA
2116884 TTTTT
1 TTTTT
2116889 GTCCTTAACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTTAATAATTTTGACCA
Found at i:2117164 original size:22 final size:22
Alignment explanation
Indices: 2117107--2117165 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
2117097 ACGCGATTCT
2117107 GACTATCGCATTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
* * *
2117129 AAAT-TCGCGTTGCGATTTTCC
1 GACTATCGCATTGCGATTTTCC
*
2117150 GACTATCGCAATGCGA
1 GACTATCGCATTGCGA
2117166 ATATGTAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
GACTATCGCATTGCGATTTTCC
Found at i:2117179 original size:20 final size:20
Alignment explanation
Indices: 2117154--2117230 Score: 154
Period size: 20 Copynumber: 3.9 Consensus size: 20
2117144 TTTTCCGACT
2117154 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
2117174 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
2117194 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
2117214 ATCGCAATGCGAATATG
1 ATCGCAATGCGAATATG
2117231 ACTATCGCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:2117237 original size:20 final size:20
Alignment explanation
Indices: 2117150--2117305 Score: 138
Period size: 20 Copynumber: 7.8 Consensus size: 20
2117140 GCGATTTTCC
2117150 GACTATCGCAATGCGAATAT
1 GACTATCGCAATGCGAATAT
*
2117170 GTA-AATCGCAATGCGAATAT
1 G-ACTATCGCAATGCGAATAT
*
2117190 GTA-AATCGCAATGCGAATAT
1 G-ACTATCGCAATGCGAATAT
*
2117210 GTA-AATCGCAATGCGAATAT
1 G-ACTATCGCAATGCGAATAT
* * *
2117230 GACTATCGCAACGCGATTCT
1 GACTATCGCAATGCGAATAT
* * * * *
2117250 GACTATCACAACGAGATTCT
1 GACTATCGCAATGCGAATAT
* * *
2117270 GACTATCGCAACGCGATTCT
1 GACTATCGCAATGCGAATAT
2117290 GACTATCGCAATGCGA
1 GACTATCGCAATGCGA
2117306 TTTTCAAAGC
Statistics
Matches: 124, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
19 1 0.01
20 122 0.98
21 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (20 bp):
GACTATCGCAATGCGAATAT
Found at i:2117238 original size:40 final size:40
Alignment explanation
Indices: 2117150--2117245 Score: 158
Period size: 40 Copynumber: 2.4 Consensus size: 40
2117140 GCGATTTTCC
2117150 GACTATCGCAATGCGAATATGTAAATCGCAATGCGAATAT
1 GACTATCGCAATGCGAATATGTAAATCGCAATGCGAATAT
*
2117190 GTA-AATCGCAATGCGAATATGTAAATCGCAATGCGAATAT
1 G-ACTATCGCAATGCGAATATGTAAATCGCAATGCGAATAT
*
2117230 GACTATCGCAACGCGA
1 GACTATCGCAATGCGA
2117246 TTCTGACTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
39 1 0.02
40 49 0.96
41 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (40 bp):
GACTATCGCAATGCGAATATGTAAATCGCAATGCGAATAT
Found at i:2117496 original size:22 final size:22
Alignment explanation
Indices: 2117471--2117515 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
2117461 CACTCTCTAA
* *
2117471 GACGACATCCGTCCCCATCTCC
1 GACGAAATCAGTCCCCATCTCC
2117493 GACGAAATCAGTCCCCATCTCC
1 GACGAAATCAGTCCCCATCTCC
2117515 G
1 G
2117516 GCAAAATCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.44, G:0.16, T:0.18
Consensus pattern (22 bp):
GACGAAATCAGTCCCCATCTCC
Found at i:2117522 original size:22 final size:22
Alignment explanation
Indices: 2117481--2117523 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
2117471 GACGACATCC
*
2117481 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACAAAATCA
*
2117503 GTCCCCATCTCCGGCAAAATC
1 GTCCCCATCTCCGACAAAATC
2117524 CGTCTATCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.42, G:0.14, T:0.19
Consensus pattern (22 bp):
GTCCCCATCTCCGACAAAATCA
Found at i:2117957 original size:20 final size:20
Alignment explanation
Indices: 2117881--2117950 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
2117871 ACAGAATCGC
*
2117881 GTTGCGATTTTCA-TTTCGC
1 GTTGCGATTTTCATTTTCGT
**
2117900 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
*
2117920 GTTGCGGTTTTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
2117940 GTTGCGATTTT
1 GTTGCGATTTT
2117951 AAGTTTCAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 11 0.26
20 32 0.74
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.50
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Found at i:2119698 original size:18 final size:18
Alignment explanation
Indices: 2119675--2119725 Score: 102
Period size: 18 Copynumber: 2.8 Consensus size: 18
2119665 TTTACTCGTA
2119675 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
2119693 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
2119711 ATTTCACTTAGATTA
1 ATTTCACTTAGATTA
2119726 CTTAGTAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (18 bp):
ATTTCACTTAGATTAACC
Found at i:2119900 original size:20 final size:20
Alignment explanation
Indices: 2119875--2119919 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
2119865 TTTACTTTCA
2119875 CAACGCGAAAATGACTATCG
1 CAACGCGAAAATGACTATCG
**
2119895 CAACGCGAATTTGACTATCG
1 CAACGCGAAAATGACTATCG
2119915 CAACG
1 CAACG
2119920 AAAGAATCCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.18
Consensus pattern (20 bp):
CAACGCGAAAATGACTATCG
Found at i:2120539 original size:18 final size:19
Alignment explanation
Indices: 2120500--2120541 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
2120490 CTCGCCTATC
2120500 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-C-CCCCT
2120521 ATCGTTCAAGAGG-CCCCT
1 ATCGTTCAAGAGGCCCCCT
2120539 ATC
1 ATC
2120542 ATCCCTTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
21 13 0.62
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (19 bp):
ATCGTTCAAGAGGCCCCCT
Found at i:2120595 original size:42 final size:42
Alignment explanation
Indices: 2120524--2120605 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
2120514 CTCCCCTATC
* *
2120524 GTTCAAGAGGCCCCTATCATCCCTTAAGA-GTCCCCTCCCACT
1 GTTCAAGAAGCCACTATCATCCCTTAAGAGGT-CCCTCCCACT
*
2120566 GTTCAAGAAGCCACTATCAT-CGTTGAAGAGGTCCCTCCCA
1 GTTCAAGAAGCCACTATCATCCCTT-AAGAGGTCCCTCCCA
2120606 ACATTCTAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 3 0.09
42 30 0.86
43 2 0.06
ACGTcount: A:0.24, C:0.35, G:0.17, T:0.23
Consensus pattern (42 bp):
GTTCAAGAAGCCACTATCATCCCTTAAGAGGTCCCTCCCACT
Found at i:2122595 original size:23 final size:22
Alignment explanation
Indices: 2122569--2122632 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
2122559 CAGCTCATAT
2122569 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* *
2122592 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
2122615 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
2122633 TATAATAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:2122777 original size:103 final size:103
Alignment explanation
Indices: 2122652--2122968 Score: 589
Period size: 103 Copynumber: 3.1 Consensus size: 103
2122642 GTCCATAAAA
2122652 ACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACT
1 ACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACT
*
2122717 TCACACATGTTCCAAAGAATGCATATATGTCCCGAAGG
66 TCACACATGTTCCAAAGAATACATATATGTCCCGAAGG
* *
2122755 ACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACC
1 ACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACT
2122820 TCACACATGTTCCAAAGAATACATATATGTCCCGAAGG
66 TCACACATGTTCCAAAGAATACATATATGTCCCGAAGG
2122858 ACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACT
1 ACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACT
* *
2122923 TCACACATGTTCCAAAGAAAATATATATGTCCCGAAGG
66 TCACACATGTTCCAAAGAATACATATATGTCCCGAAGG
2122961 ACCACATA
1 ACCACATA
2122969 GACCCTCTAC
Statistics
Matches: 207, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 207 1.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.26
Consensus pattern (103 bp):
ACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACT
TCACACATGTTCCAAAGAATACATATATGTCCCGAAGG
Found at i:2129622 original size:23 final size:22
Alignment explanation
Indices: 2129596--2129659 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
2129586 CAGCTCATAT
2129596 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* * *
2129619 AATTGCACCGGAGTGTCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
2129642 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
2129660 TATAATAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.22
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:2129803 original size:103 final size:103
Alignment explanation
Indices: 2129675--2129995 Score: 588
Period size: 103 Copynumber: 3.1 Consensus size: 103
2129665 TAATGTCCAT
2129675 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
* *
2129740 TACTTCACGCATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
* * *
2129778 AATGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGCGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
*
2129843 GACCTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
2129881 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
2129946 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
2129984 AAGGACCACATA
1 AAGGACCACATA
2129996 GACCCTCTAC
Statistics
Matches: 208, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 208 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:2130510 original size:19 final size:20
Alignment explanation
Indices: 2130473--2130510 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2130463 TTTTTCATTA
*
2130473 TGGGGGAATCGGTTCCCCCC
1 TGGGGGAATCGATTCCCCCC
*
2130493 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
2130511 TCTAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCC
Found at i:2130562 original size:21 final size:21
Alignment explanation
Indices: 2130538--2130580 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
2130528 TCATATTCGT
*
2130538 TTGAGGGGGGATCGATTCCCC
1 TTGAAGGGGGATCGATTCCCC
* *
2130559 TTGAATGGGTATCGATTCCCC
1 TTGAAGGGGGATCGATTCCCC
2130580 T
1 T
2130581 AGCCCAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.23, G:0.30, T:0.30
Consensus pattern (21 bp):
TTGAAGGGGGATCGATTCCCC
Found at i:2131362 original size:14 final size:14
Alignment explanation
Indices: 2131325--2131386 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
2131315 TTGCTTGTTT
*
2131325 AATTGATTTATAAA
1 AATTGATTTGTAAA
2131339 AATTGATTTGTAAA
1 AATTGATTTGTAAA
* *
2131353 AGTTGATTTGTTTAA
1 AATTGATTTG-TAAA
* *
2131368 TATTGATGTGTAAA
1 AATTGATTTGTAAA
2131382 TAATT
1 -AATT
2131387 CTTATTTGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 13 0.34
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.47
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:2131565 original size:20 final size:20
Alignment explanation
Indices: 2131536--2131780 Score: 235
Period size: 20 Copynumber: 12.8 Consensus size: 20
2131526 GTAATTTTCT
* ** *
2131536 CGTTGTGATAGTCAAACACC
1 CGTTGCGATAGTCAAATTCG
* *
2131556 CGTTGCGATAATCAAATTCA
1 CGTTGCGATAGTCAAATTCG
*
2131576 CGTTGCGATACTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
2131596 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
2131616 CGTTGCGATGGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
* *
2131636 TGTTGCGATAGACAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
2131656 CGTTGCGAT--T----TTGG
1 CGTTGCGATAGTCAAATTCG
*
2131670 CGTTGCGATAGTCATATTCG
1 CGTTGCGATAGTCAAATTCG
* *
2131690 TGTTGCGATAGTCAAATTCA
1 CGTTGCGATAGTCAAATTCG
*
2131710 CGTTGCGAT--T----TTTG
1 CGTTGCGATAGTCAAATTCG
* *
2131724 AGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
2131744 TGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
2131764 CGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
2131781 GAATGTGTAA
Statistics
Matches: 185, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
14 22 0.12
16 2 0.01
18 1 0.01
20 160 0.86
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.33
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:2131697 original size:54 final size:54
Alignment explanation
Indices: 2131556--2131772 Score: 272
Period size: 54 Copynumber: 3.9 Consensus size: 54
2131546 GTCAAACACC
** *
2131556 CGTTGCGATAATCAAATTCACGTTGCGATACTCAAATTCGCGTTGCGATAGTCAAATTCG
1 CGTTGCGATAATCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGAT--T----TTCG
** * *
2131616 CGTTGCGATGGTCAAATTCGTGTTGCGATAGACAAATTCGCGTTGCGATTTTGG
1 CGTTGCGATAATCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGATTTTCG
* * * *
2131670 CGTTGCGATAGTCATATTCGTGTTGCGATAGTCAAATTCACGTTGCGATTTTTG
1 CGTTGCGATAATCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGATTTTCG
*
2131724 AGTTGCGATAATCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGAT
1 CGTTGCGATAATCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGAT
2131773 ATTCAAATGA
Statistics
Matches: 141, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
54 97 0.69
58 1 0.01
60 43 0.30
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (54 bp):
CGTTGCGATAATCAAATTCGTGTTGCGATAGTCAAATTCGCGTTGCGATTTTCG
Found at i:2132002 original size:140 final size:139
Alignment explanation
Indices: 2131751--2132019 Score: 493
Period size: 140 Copynumber: 1.9 Consensus size: 139
2131741 TCGTGTTGCG
* * *
2131751 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAATGATAACAACTGAACATATCAT
1 ATAGTCAAATTCACGTTGCAATATTCAAATGAATGTGTAATAATGATAACAACTGAACAGATCAT
2131816 AGCAATGTTCAAACTCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAAA
66 AGCAATGTTCAAACTCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAAA
2131881 ATACACATA
131 ATACACATA
*
2131890 ATAGTCAAATTCACGTTGCAATATTCAAATGAATGTGTAATAAGTGATAATAACTGAACAGATCA
1 ATAGTCAAATTCACGTTGCAATATTCAAATGAATGTGTAATAA-TGATAACAACTGAACAGATCA
2131955 TAGCAATGTTCAAACTCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAA
65 TAGCAATGTTCAAACTCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAA
2132020 TACAACGTTT
Statistics
Matches: 125, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
139 41 0.33
140 84 0.67
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (139 bp):
ATAGTCAAATTCACGTTGCAATATTCAAATGAATGTGTAATAATGATAACAACTGAACAGATCAT
AGCAATGTTCAAACTCAAGTTACTAATACATGTCTAACTGAAAATGTTAAAAGTTTACACATAAA
ATACACATA
Found at i:2134153 original size:14 final size:14
Alignment explanation
Indices: 2134134--2134170 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
2134124 TCTCGTGGCA
2134134 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
*
2134148 TTTTCTTCGGGGAT
1 TTTTCTTCGGGGAC
2134162 TTCTTCTTC
1 TT-TTCTTC
2134171 TTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:2134399 original size:24 final size:24
Alignment explanation
Indices: 2134372--2134418 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
2134362 CAAAATCCGA
2134372 GTATTGACCAAGATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
2134396 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
2134419 AATACCGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:2135259 original size:20 final size:20
Alignment explanation
Indices: 2135235--2135405 Score: 166
Period size: 20 Copynumber: 8.6 Consensus size: 20
2135225 AAATTCAATG
* * *
2135235 TTGCGACAGTCAGACTCGCG
1 TTGCGATAGTCAGAATCGCA
* *
2135255 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCA
2135275 TTGCGATAGTCAGAATCGCA
1 TTGCGATAGTCAGAATCGCA
2135295 TTGCGATAGTCAGAATCGCA
1 TTGCGATAGTCAGAATCGCA
*
2135315 TTGCGATAGTCATAATCGCA
1 TTGCGATAGTCAGAATCGCA
* * * *
2135335 TTGCGAT-TTACATATTCGCT
1 TTGCGATAGT-CAGAATCGCA
* * *
2135355 TTGCGATAGTCATATTCGTA
1 TTGCGATAGTCAGAATCGCA
* * *
2135375 TTGCGAT-TTACATATTCGCA
1 TTGCGATAGT-CAGAATCGCA
2135395 TTGCGATAGTC
1 TTGCGATAGTC
2135406 GGAAAATCGC
Statistics
Matches: 132, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.02
20 128 0.97
21 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCA
Found at i:2135382 original size:40 final size:40
Alignment explanation
Indices: 2135275--2135405 Score: 183
Period size: 40 Copynumber: 3.3 Consensus size: 40
2135265 CAGAATCTCG
* * * *
2135275 TTGCGATAGTCAGAATCGCATTGCGATAGT-CAGAATCGCA
1 TTGCGATAGTCATAATCGCATTGCGAT-TTACATATTCGCA
*
2135315 TTGCGATAGTCATAATCGCATTGCGATTTACATATTCGCT
1 TTGCGATAGTCATAATCGCATTGCGATTTACATATTCGCA
* *
2135355 TTGCGATAGTCATATTCGTATTGCGATTTACATATTCGCA
1 TTGCGATAGTCATAATCGCATTGCGATTTACATATTCGCA
2135395 TTGCGATAGTC
1 TTGCGATAGTC
2135406 GGAAAATCGC
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (40 bp):
TTGCGATAGTCATAATCGCATTGCGATTTACATATTCGCA
Found at i:2138926 original size:23 final size:23
Alignment explanation
Indices: 2138900--2138962 Score: 117
Period size: 23 Copynumber: 2.7 Consensus size: 23
2138890 CTGAATGATT
2138900 CAGTGTTGAATGATTCAACAAAA
1 CAGTGTTGAATGATTCAACAAAA
*
2138923 CAGTGCTGAATGATTCAACAAAA
1 CAGTGTTGAATGATTCAACAAAA
2138946 CAGTGTTGAATGATTCA
1 CAGTGTTGAATGATTCA
2138963 GCACTGTGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (23 bp):
CAGTGTTGAATGATTCAACAAAA
Found at i:2138980 original size:36 final size:36
Alignment explanation
Indices: 2138933--2139002 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
2138923 CAGTGCTGAA
*
2138933 TGATTCAACAAAACAGTGTTGAATGATTCAGCACTG
1 TGATTCAACAAAACAGTGCTGAATGATTCAGCACTG
2138969 TGATTCAACAAAACAGTGCTGAATGATTCAGCAC
1 TGATTCAACAAAACAGTGCTGAATGATTCAGCAC
2139003 ATAAGTACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (36 bp):
TGATTCAACAAAACAGTGCTGAATGATTCAGCACTG
Found at i:2139152 original size:2 final size:2
Alignment explanation
Indices: 2139145--2139175 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
2139135 CCCCTAAATA
2139145 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2139176 TTAAATACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:2141668 original size:23 final size:23
Alignment explanation
Indices: 2141638--2141685 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
2141628 AGACATATGT
2141638 ATGTATGTATGCATGTCAATTAA
1 ATGTATGTATGCATGTCAATTAA
2141661 ATGTATGTATGCATGTCAATTAA
1 ATGTATGTATGCATGTCAATTAA
2141684 AT
1 AT
2141686 TAAAATAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (23 bp):
ATGTATGTATGCATGTCAATTAA
Found at i:2154822 original size:37 final size:37
Alignment explanation
Indices: 2154772--2154878 Score: 196
Period size: 37 Copynumber: 2.9 Consensus size: 37
2154762 TCATACCATA
*
2154772 CATAAACATGAGGATGCTGGTAGCTGTCTGATGAATG
1 CATAAACATGAGGATGCTGGTAGCTGTTTGATGAATG
*
2154809 CATAAACACGAGGATGCTGGTAGCTGTTTGATGAATG
1 CATAAACATGAGGATGCTGGTAGCTGTTTGATGAATG
2154846 CATAAACATGAGGATGCTGGTAGCTGTTTGATG
1 CATAAACATGAGGATGCTGGTAGCTGTTTGATG
2154879 CCAAAACAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.28
Consensus pattern (37 bp):
CATAAACATGAGGATGCTGGTAGCTGTTTGATGAATG
Found at i:2156941 original size:42 final size:42
Alignment explanation
Indices: 2156860--2156942 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
2156850 TAATATGAAA
* * *
2156860 GTCAAATTTAAAACACAGTTTTCGAATTTGCAACACGAATTT
1 GTCAAATTCAAAACACAGTTTTCAAATTCGCAACACGAATTT
* * * *
2156902 GTCAAATTCACAACTCAGTTTTCAAATTCGTAACTCGAATT
1 GTCAAATTCAAAACACAGTTTTCAAATTCGCAACACGAATT
2156943 CTGATTTCGC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (42 bp):
GTCAAATTCAAAACACAGTTTTCAAATTCGCAACACGAATTT
Found at i:2156951 original size:20 final size:20
Alignment explanation
Indices: 2156928--2157003 Score: 116
Period size: 20 Copynumber: 3.8 Consensus size: 20
2156918 AGTTTTCAAA
* *
2156928 TTCGTAACTCGAATTCTGAT
1 TTCGCAACTCGAATTCAGAT
*
2156948 TTCGCAACTCGAATTCGGAT
1 TTCGCAACTCGAATTCAGAT
2156968 TTCGCAACTCGAATTCAGAT
1 TTCGCAACTCGAATTCAGAT
*
2156988 TTCACAACTCGAATTC
1 TTCGCAACTCGAATTC
2157004 GTCAATTTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (20 bp):
TTCGCAACTCGAATTCAGAT
Found at i:2157298 original size:20 final size:20
Alignment explanation
Indices: 2157273--2157329 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
2157263 GCGGTAAAAA
**
2157273 TTCGCAACTCGAATTTGGAT
1 TTCGCAACTCGAATTTCAAT
*
2157293 TTCGCAACTTGAATTCGTCAAT
1 TTCGCAACTCGAATT--TCAAT
2157315 TTCGCAACTC-AATTT
1 TTCGCAACTCGAATTT
2157330 TACAGAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 1 0.03
20 14 0.45
21 4 0.13
22 12 0.39
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (20 bp):
TTCGCAACTCGAATTTCAAT
Found at i:2157588 original size:22 final size:22
Alignment explanation
Indices: 2157559--2157638 Score: 85
Period size: 22 Copynumber: 3.8 Consensus size: 22
2157549 AACGCGGTAA
2157559 AATT-GAGTTACGAAATTGGTG
1 AATTCGAGTTACGAAATTGGTG
* *
2157580 AATTCGAGTTGCGAAA-T-CTG
1 AATTCGAGTTACGAAATTGGTG
* * *
2157600 AATTTGAGTTACGAATTTGGTA
1 AATTCGAGTTACGAAATTGGTG
*
2157622 AATTCGTGTTACGAAAT
1 AATTCGAGTTACGAAAT
2157639 ATAAATTCTT
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
20 15 0.33
21 6 0.13
22 25 0.54
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.35
Consensus pattern (22 bp):
AATTCGAGTTACGAAATTGGTG
Found at i:2157936 original size:19 final size:19
Alignment explanation
Indices: 2157914--2157950 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
2157904 TATTTTAAAT
2157914 TTTTCGTATAATTTATATA
1 TTTTCGTATAATTTATATA
* *
2157933 TTTTCTTATATTTTATAT
1 TTTTCGTATAATTTATAT
2157951 TGATATTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTCGTATAATTTATATA
Found at i:2160027 original size:25 final size:24
Alignment explanation
Indices: 2159968--2160034 Score: 64
Period size: 30 Copynumber: 2.5 Consensus size: 24
2159958 AGGGACAACC
2159968 ATTTT-TTAATTAAATGAATTAGT
1 ATTTTATTAATTAAATGAATTAGT
2159991 ATTTTATGTTATTAAATTAAATGAATTAGT
1 A---T-T-TTATT-AATTAAATGAATTAGT
2160021 ATTTTATTTAATTA
1 ATTTTA-TTAATTA
2160035 CCTTTTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 14
0.72 0.00 0.28
Matches are distributed among these distances:
23 1 0.03
25 8 0.22
26 4 0.11
27 2 0.06
28 2 0.06
29 2 0.06
30 17 0.47
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (24 bp):
ATTTTATTAATTAAATGAATTAGT
Found at i:2165969 original size:2 final size:2
Alignment explanation
Indices: 2165962--2165998 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
2165952 ATTAATAATT
2165962 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2165999 TAAAATTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2167896 original size:27 final size:27
Alignment explanation
Indices: 2167847--2167898 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
2167837 TTCAGAGGAA
* *
2167847 GTTAGGCGGTTAGGAGACTGTTGAGAG
1 GTTAGGCAGTTAGGAGACGGTTGAGAG
2167874 GTTAGGCAGTTAGGA-AGCGGTTGAG
1 GTTAGGCAGTTAGGAGA-CGGTTGAG
2167899 CTTCTGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.05
27 21 0.95
ACGTcount: A:0.23, C:0.08, G:0.44, T:0.25
Consensus pattern (27 bp):
GTTAGGCAGTTAGGAGACGGTTGAGAG
Found at i:2172496 original size:27 final size:27
Alignment explanation
Indices: 2172447--2172498 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
2172437 TTCAGAGGAA
* *
2172447 GTTAGGCGGTTAGGAGACTGTTGAGAG
1 GTTAGGCAGTTAGGAGACGGTTGAGAG
2172474 GTTAGGCAGTTAGGA-AGCGGTTGAG
1 GTTAGGCAGTTAGGAGA-CGGTTGAG
2172499 CTTCTGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.05
27 21 0.95
ACGTcount: A:0.23, C:0.08, G:0.44, T:0.25
Consensus pattern (27 bp):
GTTAGGCAGTTAGGAGACGGTTGAGAG
Done.