Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008365.1 Hibiscus syriacus cultivar Beakdansim tig00111106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68636

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2714--2771
22
2.6
22
100
0
116
10
24
39
25
1.87
3260--3304
13
3.3
13
87
6
63
48
11
0
40
1.39
3260--3304
15
3.1
15
84
12
67
48
11
0
40
1.39
3803--3839
15
2.4
15
90
4
56
51
2
5
40
1.39
3915--3993
7
11.3
7
81
0
77
50
30
0
18
1.47
3915--3993
21
3.8
21
84
0
86
50
30
0
18
1.47
3042--4492
545
2.7
533
87
7
2007
43
11
8
36
1.71
4656--4705
23
2.1
24
92
3
84
50
4
0
46
1.20
5234--5279
18
2.6
18
85
0
56
17
10
30
41
1.84
13785--13826
12
3.7
12
84
6
52
47
14
16
21
1.82
14564--14653
30
3.0
29
75
6
81
34
25
21
18
1.96
14674--14747
32
2.3
32
81
6
89
37
16
14
31
1.89
15262--15292
16
1.9
16
100
0
62
35
19
0
45
1.51
20713--20745
2
16.5
2
100
0
66
48
0
0
51
1.00
26539--26599
21
3.2
21
65
26
62
31
4
16
47
1.68
26538--26608
36
2.0
35
97
2
133
30
5
16
46
1.70
26743--26802
30
2.0
30
96
0
111
30
5
20
45
1.72
26875--27057
8
24.9
8
66
25
57
25
31
16
26
1.97
26927--27058
20
6.8
20
73
13
89
28
28
16
26
1.97
32575--32616
3
13.7
3
82
9
50
30
2
0
66
1.04
40023--40053
15
2.1
15
93
0
53
45
0
0
54
0.99
40214--40264
20
2.5
20
96
0
93
19
21
11
47
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45577--45695
21
5.7
21
72
3
87
24
36
17
21
1.95
45602--45695
42
2.2
42
81
3
109
25
36
18
20
1.95
47059--47094
14
2.6
14
90
0
54
30
0
22
47
1.52
47190--47228
20
1.9
21
94
5
71
43
23
17
15
1.87
47220--47273
14
3.5
14
73
22
54
44
20
24
11
1.83
47233--47298
19
3.7
19
75
19
79
45
19
22
12
1.83
47200--47294
33
2.8
33
93
1
154
43
21
23
12
1.86
47311--47417
33
3.2
33
91
1
169
16
22
16
43
1.87
47409--47497
20
4.4
20
92
2
144
15
21
25
37
1.93
51298--51386
45
1.9
47
93
4
155
28
11
23
37
1.89
60979--61093
17
6.8
16
74
20
74
76
0
13
10
1.02
60965--61113
16
9.6
15
73
18
69
75
0
14
8
1.07
61003--61054
23
2.3
23
80
9
63
76
0
19
3
0.93
61043--61109
23
3.0
24
72
10
61
79
0
8
11
0.95
60954--61109
55
2.8
55
80
13
151
75
0
14
8
1.07
62427--62832
51
7.9
51
94
1
659
29
15
27
27
1.96
62427--62939
102
4.9
102
89
3
670
29
15
26
28
1.96
62437--62939
51
9.6
55
90
3
252
29
15
26
28
1.96
62744--62967
55
4.1
55
81
6
188
29
16
22
32
1.95
65318--65364
8
6.5
8
77
22
59
14
38
25
21
1.92
65313--65357
13
3.3
13
90
6
63
15
42
24
17
1.88
65334--65365
7
4.4
7
92
7
55
12
34
28
25
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65318--65364
15
3.3
15
91
5
71
14
38
25
21
1.92

Tables:   1

The End!