genome.fa.s8366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008366.1 Hibiscus syriacus cultivar Beakdansim tig00111107_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85163

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5809--5838	2	15.0	2	92	0	51	46	0	3	50	1.18
9336--9468	16	7.9	16	73	20	76	76	0	13	9	1.01
9322--9472	16	9.6	15	72	20	64	76	0	14	8	1.06
9360--9411	23	2.3	23	80	9	63	76	0	19	3	0.93
9311--9459	55	2.6	54	81	10	158	75	0	14	8	1.07
10789--11193	51	7.9	51	94	1	650	28	15	27	27	1.96
10789--11300	102	4.9	102	88	3	661	29	15	26	28	1.96
10789--11193	203	2.0	206	91	2	663	28	15	27	27	1.96
10799--11300	51	9.6	55	89	4	243	29	15	26	28	1.96
11104--11302	55	3.6	54	82	8	215	30	16	23	30	1.96
11105--11328	55	4.1	55	81	6	188	29	16	22	32	1.95
13668--13714	8	6.5	8	77	22	59	14	38	25	21	1.92
13663--13707	13	3.3	13	90	6	63	15	42	24	17	1.88
13684--13715	7	4.4	7	92	7	55	12	34	28	25	1.92
13668--13714	15	3.3	15	91	5	71	14	38	25	21	1.92
16175--16283	24	4.5	24	75	4	103	20	15	16	47	1.82
19785--19821	14	2.6	14	91	4	56	5	21	21	51	1.68
20023--20069	24	2.0	24	95	0	85	34	17	21	27	1.95
20027--20078	24	2.2	24	85	0	68	36	19	19	25	1.95
20907--20974	20	3.4	20	93	0	109	23	17	29	29	1.97
20963--21013	20	2.5	20	90	0	75	23	23	17	35	1.95
21010--21055	21	2.2	21	88	0	65	36	17	26	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21741--21775	2	17.5	2	100	0	70	51	0	0	48	1.00
25918--26001	44	1.9	44	97	0	159	53	25	13	8	1.67
26719--26743	5	5.0	5	100	0	50	20	20	0	60	1.37
39789--39844	28	2.1	26	87	12	78	39	0	1	58	1.08
39789--39845	26	2.2	26	84	12	73	38	0	1	59	1.08
41072--41130	30	2.0	30	90	6	93	20	1	3	74	1.05
41531--41594	23	2.7	23	82	2	83	34	6	1	57	1.33
41519--41564	2	24.0	2	79	16	53	43	2	0	54	1.12
41593--41621	11	2.7	11	94	5	51	17	0	0	82	0.66
41589--41621	16	2.1	16	100	0	66	18	0	0	81	0.68
41655--41707	18	2.9	17	81	15	61	3	13	5	77	1.09
41665--41706	9	4.7	9	88	8	59	0	14	7	78	0.95
41684--41739	26	2.1	27	83	9	71	8	7	5	78	1.08
41669--41714	21	2.3	20	79	17	51	2	10	6	80	0.98
44762--44787	2	13.0	2	100	0	52	50	0	0	50	1.00
46096--46211	57	2.0	57	94	0	205	23	6	37	33	1.79
46417--47013	134	4.5	134	90	1	901	28	18	22	30	1.97
46915--47065	48	3.2	47	67	16	125	31	14	21	32	1.94
47140--47205	19	3.3	19	66	25	55	25	21	28	24	1.99
47159--47225	22	3.2	22	69	26	72	23	22	28	25	1.99
47135--47225	41	2.2	41	98	0	173	25	20	30	23	1.98
47176--47346	79	2.2	79	94	0	297	23	19	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47296--47383	37	2.4	37	90	1	122	23	18	23	34	1.96
47311--47383	37	2.0	37	97	0	137	23	17	21	36	1.94
47071--47464	116	3.4	116	81	6	443	23	20	24	31	1.98
47334--47510	79	2.3	79	89	1	275	26	19	23	30	1.98
54411--54450	2	20.0	2	94	0	71	47	0	0	52	1.00
54508--54552	17	2.7	18	77	22	53	64	6	2	26	1.30
54683--54716	2	17.0	2	100	0	68	50	0	0	50	1.00
55130--55159	2	15.0	2	100	0	60	50	0	0	50	1.00
55775--55861	24	3.2	24	66	25	66	20	5	36	36	1.77
55785--55876	28	3.2	28	67	24	84	21	5	41	31	1.76
55775--55886	57	2.0	57	100	0	224	23	5	38	33	1.77
57882--57923	21	2.0	21	90	0	66	21	28	23	26	1.99
58591--58715	31	4.0	32	75	9	96	31	21	16	30	1.96
67975--68015	3	13.7	3	85	10	57	34	0	2	63	1.08
67975--68024	12	4.2	12	82	14	50	34	2	2	62	1.18
80903--80965	27	2.4	27	82	15	78	77	1	14	6	1.03
82001--82480	48	10.3	48	81	6	544	27	22	18	32	1.97
81999--82455	96	4.9	93	91	4	646	28	22	18	31	1.97
82715--82754	3	13.7	3	85	15	57	32	0	2	65	1.06
82715--82754	21	2.0	20	95	5	71	32	0	2	65	1.06

Tables:   1

The End!