genome.fa.s8367.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008367.1 Hibiscus syriacus cultivar Beakdansim tig00111119_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73592

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4732--4791	23	2.6	23	80	12	70	63	1	0	35	1.05
4855--4945	42	2.1	46	84	12	120	56	0	1	42	1.06
6724--6833	3	36.7	3	92	3	186	64	0	0	35	0.94
6964--7322	76	4.7	76	92	1	567	35	21	20	23	1.96
6964--7556	153	3.7	152	80	13	586	34	20	20	24	1.96
7270--7501	45	5.1	45	92	1	365	34	18	21	25	1.96
8228--8304	22	3.5	22	96	0	145	40	14	11	33	1.82
17135--17181	20	2.3	21	79	17	55	59	4	2	34	1.29
17807--17857	23	2.2	24	86	6	70	58	3	0	37	1.16
18782--18832	23	2.2	24	86	6	70	58	5	0	35	1.22
18782--18838	23	2.5	23	83	8	64	59	7	0	33	1.24
18905--18998	45	2.1	45	88	6	136	56	0	1	42	1.06
17320--19269	970	2.0	976	93	3	3340	43	8	10	36	1.71
20787--20867	3	26.7	3	92	2	135	64	0	0	35	0.94
24053--24115	34	1.9	34	83	6	85	44	6	14	34	1.70
26151--26237	41	2.1	42	82	2	104	29	22	19	27	1.98
27107--27180	3	25.0	3	97	2	141	66	0	0	33	0.92
27179--27216	3	12.7	3	94	0	67	31	0	34	34	1.58
31606--31685	2	40.0	2	100	0	160	50	0	0	50	1.00
33139--33527	44	8.9	44	89	2	534	42	11	21	24	1.86
34257--34394	71	2.0	70	89	4	215	33	15	19	31	1.94
34260--34397	35	3.9	35	74	11	140	34	15	18	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36024--36093	14	5.0	14	71	0	59	34	18	22	24	1.96
36027--36092	28	2.4	28	97	0	123	31	18	24	25	1.97
38172--38313	60	2.4	59	76	14	141	27	24	23	24	2.00
38337--38458	35	3.4	36	78	6	142	33	19	17	29	1.95
38337--38472	35	3.8	36	76	11	129	33	19	17	30	1.95
38337--38472	71	1.9	71	86	0	191	33	19	17	30	1.95
40099--40129	14	2.2	14	94	0	53	32	16	32	19	1.94
41663--41721	2	29.5	2	100	0	118	49	0	0	50	1.00
42401--42679	144	1.9	143	83	5	357	39	13	14	32	1.84
42401--42730	144	2.3	143	81	5	326	39	13	15	32	1.85
42642--42845	112	1.8	114	87	4	306	38	11	19	29	1.87
42652--42823	39	4.5	39	73	7	156	37	12	20	29	1.89
54285--54342	3	19.3	3	100	0	116	67	0	0	32	0.91
54379--54450	34	2.2	34	85	5	94	47	9	6	36	1.64
56951--57099	63	2.3	68	76	12	161	45	2	9	42	1.47
69929--70056	35	3.6	35	75	12	127	31	16	19	32	1.94
69954--70068	35	3.3	34	75	11	115	31	16	19	33	1.94

Tables:   1

The End!