genome.fa.s8368.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008368.1 Hibiscus syriacus cultivar Beakdansim tig00111122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134069

Tables:   1   

This is table  1  of  1  ( 110 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6090--6150	18	3.3	18	90	2	95	8	34	14	42	1.76
7818--7876	31	1.9	31	89	0	91	32	15	20	32	1.93
10447--10477	15	2.1	15	93	0	53	45	0	0	54	0.99
17869--17915	19	2.5	19	85	0	58	53	17	8	21	1.70
23689--23720	12	2.6	12	95	5	55	53	0	46	0	1.00
24869--24919	2	25.5	2	100	0	102	50	0	0	49	1.00
27858--27893	18	2.0	18	88	0	54	52	0	16	30	1.44
30710--30749	17	2.4	17	95	4	73	52	0	0	47	1.00
31487--31592	45	2.4	45	83	3	124	33	33	18	14	1.91
33706--33917	31	6.8	31	93	2	354	22	16	22	38	1.92
38257--38379	31	4.0	31	92	0	201	24	17	21	37	1.94
44897--44954	14	4.4	13	81	16	59	39	0	1	58	1.08
44894--44954	22	2.9	22	81	13	74	39	0	1	59	1.08
45444--45497	25	2.2	25	89	0	81	57	9	31	1	1.41
52627--52678	22	2.4	22	93	0	86	38	9	13	38	1.77
53224--53443	21	10.7	21	82	8	258	20	16	23	38	1.93
53224--53447	62	3.7	60	87	8	303	20	16	23	38	1.93
53224--53443	41	5.3	41	82	9	245	20	16	23	38	1.93
53710--53888	96	1.9	96	90	0	286	37	17	21	23	1.93
54195--54252	8	7.4	8	77	16	59	39	0	1	58	1.08
54205--54249	22	2.0	23	91	4	74	40	0	2	57	1.11
54196--54250	10	5.1	10	85	12	65	40	0	1	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54744--54794	25	2.0	25	88	0	75	58	11	29	0	1.33
60953--61000	20	2.5	19	76	10	53	52	4	10	33	1.55
62535--62578	21	2.1	21	91	8	72	36	20	15	27	1.93
63665--63780	29	3.9	28	79	15	110	41	5	0	52	1.29
63827--64123	29	10.3	29	78	7	273	50	0	8	40	1.38
63916--63990	30	2.3	32	75	15	82	48	0	6	45	1.29
63877--64124	59	4.2	59	77	5	241	50	0	9	39	1.40
69140--69221	33	2.5	32	84	9	103	57	8	7	26	1.55
69216--69261	23	2.0	24	91	8	78	60	17	4	17	1.51
69214--69268	22	2.6	21	77	13	60	60	18	5	16	1.55
69366--69762	197	2.0	197	96	3	726	23	21	24	30	1.99
71108--71178	29	2.5	30	82	13	96	63	2	1	32	1.18
71145--71178	17	1.9	18	88	5	52	64	5	0	29	1.17
73395--73446	23	2.3	22	87	9	77	44	19	1	34	1.62
73861--73972	36	3.0	38	87	11	162	16	13	21	48	1.81
74226--74262	18	2.1	18	89	0	56	51	10	5	32	1.60
74511--74561	25	2.0	25	92	0	84	39	19	7	33	1.81
80172--80246	3	25.0	3	79	0	78	25	34	5	34	1.79
81687--83750	195	10.9	198	83	11	2589	31	16	17	35	1.91
83871--83917	18	2.6	18	93	3	76	59	10	2	27	1.42
85460--85507	15	3.3	14	78	18	53	4	43	0	52	1.20
85694--85759	33	2.0	33	90	0	105	22	48	0	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85793--85857	21	3.1	21	80	6	69	15	29	15	40	1.88
88084--88126	20	2.3	18	82	17	61	18	16	11	53	1.72
88089--88135	20	2.3	20	89	10	78	17	17	10	55	1.69
88255--88301	21	2.3	21	86	13	71	17	17	10	55	1.69
89693--89765	14	5.1	14	73	16	53	41	0	0	58	0.98
93099--93182	29	2.8	31	85	3	118	58	5	28	7	1.48
97448--97540	21	4.6	20	78	4	96	38	18	24	18	1.92
97445--97540	41	2.3	41	98	0	183	39	17	23	18	1.92
97448--97540	20	4.6	20	78	4	96	38	18	24	18	1.92
97508--97643	41	3.3	41	80	3	132	33	24	19	22	1.97
97529--97643	20	5.7	20	84	2	122	33	25	18	23	1.97
97526--97663	41	3.4	41	79	2	152	35	23	17	23	1.95
97831--97874	22	2.0	22	95	0	79	20	45	15	18	1.85
98136--98173	20	1.9	20	88	0	58	13	15	21	50	1.78
99484--99528	18	2.5	18	85	0	63	26	42	15	15	1.87
99999--100065	20	3.4	20	81	2	73	38	23	22	14	1.92
100054--100111	14	3.9	14	79	16	71	48	25	17	8	1.75
100038--100128	32	2.8	33	94	3	166	47	23	18	10	1.80
99999--100133	19	7.6	19	71	19	85	42	23	20	12	1.86
100140--100246	19	5.9	19	77	11	100	12	21	23	42	1.86
100189--100243	20	2.8	19	89	5	83	16	25	23	34	1.95
102108--102143	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102250--102321	14	4.5	15	75	21	58	47	19	20	12	1.82
102260--102307	18	2.6	19	93	6	89	47	16	20	14	1.82
102352--102402	20	2.5	20	93	0	84	19	23	23	33	1.97
102765--102802	14	2.7	15	84	12	53	31	0	18	50	1.47
104040--104098	24	2.5	24	82	0	73	28	16	18	35	1.93
104273--104297	12	2.1	12	100	0	50	72	0	28	0	0.86
106576--106673	19	5.7	19	69	22	90	43	19	24	12	1.85
106576--106669	33	2.8	33	98	0	179	43	19	24	12	1.85
106673--106744	19	4.1	18	73	20	71	13	20	19	45	1.84
106851--106887	14	2.6	15	87	12	60	48	21	0	29	1.50
108233--108299	21	3.2	21	68	4	55	19	20	35	23	1.95
108233--108355	42	2.9	41	80	7	113	22	17	36	22	1.95
110344--110484	19	7.8	19	69	17	86	43	19	24	13	1.86
110369--110467	33	3.0	33	89	1	144	39	21	26	13	1.90
110439--110489	19	2.7	19	96	0	93	45	21	21	11	1.84
110485--110551	19	3.5	19	83	2	80	10	16	23	49	1.77
111069--111162	20	4.7	20	80	2	89	23	18	24	34	1.96
111088--111183	41	2.3	41	82	3	113	20	18	21	38	1.93
111151--111202	20	2.5	21	84	3	70	17	23	19	40	1.91
112286--112327	22	2.0	20	86	9	57	26	0	0	73	0.83
114476--114555	16	5.0	16	89	0	115	58	22	8	10	1.57
115619--115680	24	2.6	24	89	0	97	54	20	12	11	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116029--116075	18	2.6	19	83	6	53	61	0	0	38	0.96
116820--116861	21	1.9	23	85	9	61	35	7	0	57	1.26
117306--117391	39	2.2	40	78	14	99	23	24	18	33	1.97
121087--121145	2	29.5	2	100	0	118	49	0	0	50	1.00
121270--121309	7	5.7	7	82	11	55	57	12	0	30	1.36
121270--121331	21	3.0	21	78	7	63	51	16	0	32	1.44
121270--121309	13	2.9	14	85	11	55	57	12	0	30	1.36
121279--121335	7	8.3	7	80	3	53	50	15	0	33	1.44
121270--121331	28	2.2	28	82	5	72	51	16	0	32	1.44
121279--121342	21	3.1	21	81	2	76	48	18	1	31	1.58
123383--123444	31	2.2	28	83	13	74	29	29	24	17	1.97
126014--126083	34	2.1	34	83	0	86	44	4	11	40	1.60
127340--127372	17	1.9	17	100	0	66	12	24	6	57	1.57
130759--130793	16	2.1	18	89	10	56	65	0	8	25	1.21
130907--130952	2	23.5	2	91	4	76	52	0	0	47	1.00
130943--131027	32	2.7	32	80	14	86	61	5	3	29	1.36
131992--133153	99	11.3	100	88	6	1543	22	18	26	33	1.97
131992--133153	203	5.7	205	89	5	1592	22	18	26	33	1.97
131992--133153	302	3.8	306	90	5	1699	22	18	26	33	1.97
133734--133902	68	2.5	66	83	6	216	36	10	21	31	1.87
133734--133928	65	2.9	66	81	6	216	38	9	21	30	1.86
133878--133974	36	2.7	36	87	6	126	39	16	19	24	1.92

Tables:   1

The End!