genome.fa.s8369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008369.1 Hibiscus syriacus cultivar Beakdansim tig00111124_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99524

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309--396	14	5.6	14	67	23	50	43	19	26	11	1.84
291--417	33	3.8	33	98	0	245	43	18	25	12	1.85
417--459	20	2.2	20	87	4	61	16	18	23	41	1.89
600--635	13	2.6	14	91	8	65	47	22	0	30	1.52
591--647	13	4.4	13	80	6	53	50	19	0	29	1.47
1982--2048	21	3.2	21	68	4	55	19	20	35	23	1.95
1982--2104	42	2.9	41	80	7	113	22	17	36	22	1.95
4094--4234	19	7.8	19	69	17	86	43	19	24	13	1.86
4119--4217	33	3.0	33	89	1	144	39	21	26	13	1.90
4189--4239	19	2.7	19	96	0	93	45	21	21	11	1.84
4235--4300	19	3.5	18	83	8	78	10	16	24	48	1.78
4246--4297	18	2.7	19	88	5	70	11	19	23	46	1.82
4823--4916	20	4.7	20	80	2	89	23	18	24	34	1.96
4842--4937	41	2.3	41	82	3	113	20	18	21	38	1.93
4905--4956	20	2.5	21	84	3	70	17	23	19	40	1.91
6046--6089	23	2.0	21	86	8	61	25	0	0	75	0.81
8269--8348	16	5.0	16	89	0	115	58	22	8	10	1.57
9416--9477	24	2.6	24	89	0	97	54	20	12	11	1.68
9826--9872	18	2.6	19	83	6	53	61	0	0	38	0.96
11129--11214	39	2.2	40	78	14	99	23	24	18	33	1.97
14931--14991	2	30.5	2	100	0	122	49	0	0	50	1.00
15122--15161	7	5.7	7	82	11	55	57	12	0	30	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15122--15183	21	3.0	21	78	7	63	51	16	0	32	1.44
15122--15161	13	2.9	14	85	11	55	57	12	0	30	1.36
15131--15187	7	8.3	7	80	3	53	50	15	0	33	1.44
15122--15183	28	2.2	28	82	5	72	51	16	0	32	1.44
15131--15194	21	3.1	21	81	2	76	48	18	1	31	1.58
17267--17328	31	2.2	28	83	13	74	29	29	24	17	1.97
19918--19987	35	2.0	35	97	0	131	38	2	11	47	1.55
21268--21300	17	1.9	17	100	0	66	12	24	6	57	1.57
23359--24207	306	2.8	306	81	6	941	28	15	21	35	1.93
24739--24773	16	2.1	18	89	10	56	65	0	8	25	1.21
24890--24936	2	23.5	2	95	0	85	53	0	0	46	1.00
24922--25015	33	2.9	33	82	4	102	60	6	3	29	1.37
25990--27162	105	11.3	105	90	3	1701	22	18	26	33	1.97
25990--27162	205	5.7	207	91	3	1701	22	18	26	33	1.97
25990--27162	305	3.8	310	92	3	1803	22	18	26	33	1.97
27766--28152	65	5.8	65	72	10	235	38	11	20	29	1.88
27899--28206	36	8.9	36	70	14	166	38	13	20	27	1.90
27835--28198	202	1.8	201	83	3	480	37	12	20	28	1.90
29066--29116	22	2.3	22	89	0	84	25	9	27	37	1.87
29722--29783	20	3.0	21	79	9	65	1	16	6	75	1.08
29740--29792	23	2.4	22	84	6	72	0	15	5	79	0.91
32982--33016	16	2.1	18	89	10	56	65	0	8	25	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33131--33175	2	22.5	2	100	0	90	51	0	0	48	1.00
33161--33224	32	2.0	33	87	3	94	60	6	1	31	1.30
36591--36644	22	2.5	22	96	0	99	25	11	5	57	1.55
38359--38402	19	2.3	19	88	4	61	47	0	0	52	1.00
42099--42223	66	1.9	64	81	3	151	23	12	26	37	1.91
42437--42473	15	2.5	15	95	0	65	5	16	70	8	1.30
45882--45929	24	1.9	26	84	16	66	68	2	2	27	1.11
47291--47351	30	2.0	31	87	3	88	63	4	4	26	1.35
47528--47556	14	2.1	14	100	0	58	72	0	0	27	0.85
49789--50626	105	8.0	105	87	4	1090	39	20	18	22	1.93
49789--50626	211	4.0	210	87	4	1097	39	20	18	22	1.93
54015--54145	60	2.2	60	87	2	183	39	5	19	35	1.74
54015--54168	60	2.6	60	84	4	177	39	5	20	34	1.75
62364--62408	17	2.9	15	81	12	63	42	11	2	44	1.52
67059--67119	20	2.9	21	85	11	72	18	26	32	22	1.97
80826--80937	30	3.6	30	75	9	116	27	26	14	31	1.95
82345--82389	20	2.3	19	84	3	54	40	24	0	35	1.56
93026--93073	21	2.3	21	78	7	62	29	22	12	35	1.91
93632--93710	20	3.9	21	86	5	94	51	17	18	11	1.75
93687--93800	33	3.5	33	92	0	183	47	21	21	10	1.80
93692--93789	14	6.3	14	67	21	52	46	20	22	10	1.80
95514--95893	94	4.1	94	95	1	638	22	12	18	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95981--96063	19	4.8	17	74	16	73	45	24	21	8	1.79
95996--96023	14	2.0	14	100	0	56	42	21	28	7	1.79
96011--96073	19	3.3	19	86	4	83	46	25	17	11	1.81
96108--96174	20	3.3	20	91	0	98	22	19	20	37	1.95
96656--96697	21	2.2	20	87	12	61	21	35	16	26	1.94
98345--98500	33	4.6	33	80	12	172	12	23	19	44	1.85
98372--98468	19	5.4	18	73	16	94	13	22	19	44	1.86
98473--98546	20	3.7	20	80	5	87	18	21	22	36	1.95

Tables:   1

The End!