genome.fa.s837.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000837.1 Hibiscus syriacus cultivar Beakdansim tig00001618_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96872

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4472--4709	78	3.0	78	87	6	365	36	25	16	20	1.94
7270--7320	22	2.3	22	93	0	93	25	25	23	25	2.00
7281--7319	12	3.4	12	79	13	55	28	20	23	28	1.99
8816--8927	40	2.7	43	82	6	117	34	12	22	30	1.91
8841--8919	40	1.9	42	89	7	126	37	11	20	30	1.88
13059--13113	20	2.8	20	97	2	103	23	29	20	27	1.99
13278--13326	20	2.5	20	87	12	66	32	28	14	24	1.94
14831--14873	22	2.0	22	90	0	68	30	32	11	25	1.91
14984--15143	44	3.6	44	78	5	135	30	21	17	30	1.96
14980--15143	88	1.9	88	81	2	204	30	21	17	31	1.96
15178--15596	118	3.6	118	81	3	423	37	15	19	27	1.91
18669--18696	4	7.0	4	100	0	56	25	0	0	75	0.81
21826--21885	3	20.7	3	86	13	90	66	0	0	33	0.92
22125--22223	38	2.6	38	95	3	171	17	20	9	53	1.70
22020--22343	162	2.0	158	85	5	438	21	19	14	44	1.86
22269--22567	116	2.7	112	85	6	383	28	19	14	38	1.90
22270--22567	115	2.7	110	84	7	377	28	19	13	38	1.90
23540--23991	114	4.0	115	95	1	759	31	19	14	34	1.92
23540--23991	229	2.0	228	93	1	771	31	19	14	34	1.92
24285--24333	16	2.8	17	81	12	64	48	6	8	36	1.58
35298--35355	28	2.1	28	84	6	75	60	1	5	32	1.29
35837--35892	29	2.0	29	89	3	87	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36552--36616	34	1.9	34	83	0	85	44	6	16	32	1.73
37572--37629	3	19.7	3	86	10	84	63	0	0	36	0.94
42773--42808	18	2.1	18	89	5	56	30	0	0	69	0.89
44773--44827	20	2.8	20	97	0	101	27	18	29	25	1.98
45800--45834	19	1.9	18	88	11	54	48	11	11	28	1.74
50746--50887	45	3.2	44	76	7	142	38	13	9	38	1.76
54585--54666	29	2.8	29	92	1	128	32	14	10	41	1.81
59352--59438	29	3.0	29	89	1	129	34	13	10	41	1.79
61120--61260	54	2.7	52	84	5	194	18	13	10	57	1.64
61159--61242	26	3.2	26	65	24	66	19	9	8	63	1.50
61364--61475	2	56.0	2	100	0	224	50	0	0	50	1.00
63735--63792	24	2.4	24	94	0	98	31	20	13	34	1.92
67690--67827	59	2.6	52	79	14	154	21	17	25	36	1.94
67721--67841	59	2.1	59	95	0	215	24	17	23	34	1.96
72182--72314	59	2.4	54	82	13	141	21	15	24	37	1.93
72213--72333	59	2.1	59	88	3	181	25	15	21	37	1.93
73199--73244	21	2.2	21	96	0	83	28	13	10	47	1.76
73373--73421	19	2.6	18	81	9	62	73	2	4	20	1.10
74149--74214	2	33.0	2	100	0	132	50	0	0	50	1.00
75104--75170	28	2.3	30	84	7	84	35	4	7	52	1.50
75104--75171	31	2.3	28	85	7	82	35	4	8	51	1.53
75934--75999	22	2.8	22	82	11	78	42	3	3	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75928--75999	25	3.0	23	79	18	76	44	2	2	50	1.31
75999--76038	21	1.9	21	84	0	53	42	2	0	55	1.13
82839--82868	3	10.0	3	100	0	60	33	0	0	66	0.92
83056--83134	31	2.6	31	80	9	90	41	5	5	48	1.47
83054--83151	30	3.2	30	72	16	85	43	4	4	47	1.41
84013--84055	17	2.4	18	85	11	54	37	0	2	60	1.10
85187--85322	38	3.6	38	81	5	150	43	7	10	38	1.67
85188--85327	36	3.7	36	77	7	127	42	7	11	39	1.68
85271--85360	36	2.5	36	80	5	92	48	5	8	36	1.58
85419--85465	24	2.0	22	84	8	58	19	4	0	76	0.95
85426--85471	24	1.9	24	81	0	56	17	4	4	73	1.15
86489--86538	11	4.9	10	77	20	50	12	8	0	80	0.92
86489--86533	10	4.3	11	78	16	51	8	8	0	82	0.85
86597--86629	14	2.4	14	94	0	57	24	0	0	75	0.80
88238--88319	32	2.7	31	87	9	107	51	2	1	45	1.22
88247--88350	31	3.4	32	83	7	101	51	5	0	41	1.32
88276--88350	32	2.4	32	84	2	89	52	8	1	38	1.40
88416--88453	20	1.9	20	88	0	58	44	0	0	55	0.99
88397--88460	28	2.2	28	88	2	92	48	0	0	51	1.00
88929--88956	8	3.5	8	100	0	56	21	25	0	53	1.46
89578--89641	31	2.0	32	84	3	85	21	1	43	32	1.62
92245--92317	23	3.2	23	94	0	128	36	26	5	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92245--92333	46	1.9	46	83	0	115	38	24	5	31	1.79
92901--92946	20	2.3	20	96	3	85	45	17	6	30	1.73
93098--93180	25	3.3	25	81	0	85	40	14	8	36	1.76
93187--93273	27	3.3	27	84	9	108	42	21	5	29	1.76
93187--93260	27	2.8	28	87	8	109	44	20	6	28	1.76
94210--94282	30	2.4	30	84	9	94	32	21	17	27	1.96

Tables:   1

The End!