Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008370.1 Hibiscus syriacus cultivar Beakdansim tig00111125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48683

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4007--4045
18
2.1
19
90
4
62
20
5
5
69
1.28
10409--10491
31
2.7
30
80
12
98
67
3
16
12
1.36
10409--10507
31
3.3
29
76
16
87
68
3
18
10
1.31
12753--12778
9
2.9
9
100
0
52
57
0
23
19
1.40
14315--14351
18
2.1
18
100
0
74
37
32
10
18
1.86
16092--16168
36
2.1
36
92
0
127
40
10
6
42
1.65
18127--18183
28
2.0
28
100
0
114
36
21
17
24
1.94
18986--19026
16
2.6
16
88
0
55
31
29
19
19
1.96
19525--19558
6
5.5
6
89
6
50
0
38
0
61
0.96
26036--26116
30
2.7
30
96
0
144
51
13
13
20
1.75
27702--27859
21
7.8
20
72
7
86
38
25
17
18
1.92
27826--28075
20
12.5
20
87
1
268
37
24
18
19
1.94
28757--28803
24
2.0
24
87
8
69
25
14
21
38
1.92
28978--29002
12
2.1
12
100
0
50
72
0
28
0
0.86
31334--31431
19
5.4
19
84
13
143
14
22
17
45
1.84
31315--31431
53
2.2
53
98
1
227
13
23
17
44
1.85
31490--31581
33
2.8
33
96
1
166
45
18
22
13
1.84
31522--31638
52
2.2
52
93
0
198
45
17
20
16
1.86
31645--31744
19
5.5
19
84
12
147
15
23
17
45
1.85
31628--31744
53
2.2
53
95
1
209
14
24
17
43
1.86
31851--31887
14
2.6
14
91
0
65
45
21
0
32
1.52
33862--33918
14
3.7
14
77
20
60
45
22
21
10
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33843--33935
33
2.8
33
95
0
168
47
21
20
10
1.80
33806--33940
19
7.6
19
76
16
128
45
23
19
11
1.82
33936--34026
33
2.8
33
91
5
141
7
18
28
45
1.77
33936--34063
19
7.3
19
74
18
116
8
17
28
45
1.78
34107--34576
93
5.1
93
97
1
894
46
19
12
21
1.83
36266--36322
14
3.7
14
79
20
69
40
24
26
8
1.84
36258--36341
33
2.5
33
92
0
150
44
21
25
9
1.82
36280--36363
19
4.7
19
81
14
97
42
22
23
10
1.85
36373--36421
14
3.2
14
74
20
53
8
26
22
42
1.81
36416--36485
19
3.5
21
71
11
67
11
25
18
44
1.83
37005--37193
20
9.6
20
78
9
185
19
20
26
33
1.96
37450--37488
14
2.7
15
84
7
55
35
2
0
61
1.10
37870--37912
2
21.5
2
100
0
86
48
0
0
51
1.00
38518--38559
22
1.9
22
85
0
57
30
14
21
33
1.93
42074--42158
25
4.0
20
71
15
71
15
22
23
38
1.92
42108--42158
25
2.0
25
100
0
102
11
23
23
41
1.87
42299--42347
6
8.5
6
97
2
84
30
53
16
0
1.43
42903--42940
6
6.5
6
90
3
60
0
15
50
34
1.45
46507--46743
78
3.0
79
86
3
318
27
17
21
32
1.96
47589--47613
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!