genome.fa.s8376.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008376.1 Hibiscus syriacus cultivar Beakdansim tig00111136_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143518

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4287--4335	5	9.8	5	88	0	62	6	40	34	18	1.75
4333--4393	6	10.2	6	96	0	86	6	16	49	27	1.70
4666--4720	22	2.5	22	75	0	56	29	9	23	38	1.85
6605--6680	27	2.5	33	73	24	101	47	10	7	34	1.67
13892--13945	28	2.0	26	82	13	65	33	7	12	46	1.70
20181--20224	19	2.3	19	85	11	63	36	2	0	61	1.09
20182--20224	20	2.2	20	88	8	63	37	2	0	60	1.10
25022--25087	33	2.0	33	100	0	132	30	18	18	33	1.94
28513--28796	45	6.3	45	83	2	304	26	25	11	36	1.89
28833--29080	81	3.1	80	89	2	379	32	20	10	36	1.87
29751--29791	19	2.2	19	90	0	64	34	19	12	34	1.89
32669--32701	16	2.1	16	88	5	50	27	0	3	69	1.03
41312--41471	65	2.5	63	85	7	205	30	23	19	27	1.98
48661--48768	45	2.4	46	85	4	148	25	23	20	30	1.98
48738--48786	19	2.6	19	84	9	57	24	30	18	26	1.98
48928--48965	17	2.2	18	85	4	51	60	10	15	13	1.59
50534--50635	3	33.7	3	71	21	54	35	0	0	62	1.08
50524--50616	16	6.3	16	70	26	71	36	1	1	61	1.10
50531--50619	13	7.0	13	76	16	64	35	0	1	62	1.02
50471--50957	163	3.0	160	86	7	703	40	2	0	56	1.18
50843--50930	16	6.1	15	78	16	78	42	1	0	56	1.06
50805--50893	27	3.3	27	77	13	85	38	2	1	58	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50890--50926	7	5.0	7	87	12	56	54	0	0	45	1.00
50860--50949	13	6.5	14	75	16	66	42	0	0	57	0.98
56763--56815	21	2.5	21	87	0	79	20	24	20	33	1.97
56805--56870	20	3.3	20	81	10	64	28	22	21	27	1.99
57691--57768	24	3.2	24	92	0	120	23	19	17	39	1.92
60000--60039	18	2.2	18	90	0	62	52	27	2	17	1.57
60094--60363	140	1.9	140	95	0	486	29	12	14	42	1.83
60334--60587	20	13.6	20	74	14	222	32	22	19	25	1.97
60362--60572	34	5.9	34	80	9	172	33	23	19	23	1.97
60577--60634	20	2.9	20	81	0	62	12	15	25	46	1.80
60758--60794	14	2.6	14	95	0	65	45	10	0	43	1.39
62741--62787	18	2.5	19	82	6	60	38	27	17	17	1.91
62741--62788	20	2.6	18	83	6	60	37	27	18	16	1.92
62836--62877	20	2.1	20	90	0	66	26	19	21	33	1.97
63025--63074	18	2.8	18	100	0	100	42	6	20	32	1.76
64775--64830	20	2.8	20	88	0	76	48	25	16	10	1.78
64787--64851	20	3.2	20	84	0	76	43	21	18	16	1.88
65474--65560	20	4.3	20	89	0	129	25	20	25	28	1.99
65576--65627	21	2.4	22	74	6	61	36	19	25	19	1.95
66013--66469	105	4.4	102	79	4	387	37	12	13	36	1.83
66109--66469	105	3.4	105	81	4	392	39	13	12	34	1.82
68423--68491	22	3.3	22	73	19	83	52	11	2	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68443--68505	19	3.2	19	71	20	65	50	12	1	34	1.50
68423--68505	41	2.0	41	100	0	166	51	12	2	33	1.52
69046--69102	28	2.0	29	96	3	107	33	17	7	42	1.76
71699--71764	4	15.2	4	73	14	51	66	3	3	27	1.21
71699--71764	14	5.1	12	72	13	51	66	3	3	27	1.21
71707--71763	23	2.5	23	80	2	71	68	1	3	26	1.15
71770--71818	22	2.3	20	80	13	55	65	2	2	30	1.15
74885--74949	32	2.0	32	100	0	130	35	15	9	40	1.79
76217--76269	24	2.2	24	100	0	106	37	7	11	43	1.69
82260--82340	20	3.9	21	75	15	69	22	34	25	17	1.95
82262--82321	23	2.7	23	80	7	72	20	35	25	20	1.96
86980--87047	21	3.5	20	90	7	95	26	17	25	30	1.97
89503--89577	31	2.4	31	86	0	105	52	16	8	24	1.70
89688--89807	42	2.9	42	98	0	231	15	20	19	44	1.87
89986--90092	31	3.6	29	72	18	85	51	0	0	46	1.13
90006--90170	29	5.6	29	74	20	110	46	1	1	51	1.16
90145--90217	24	3.1	24	77	15	64	46	1	0	52	1.09
90337--90375	20	2.0	20	84	0	51	33	17	7	41	1.79
90349--90420	30	2.4	30	97	2	137	31	19	6	41	1.78
90349--90415	15	4.5	15	84	3	91	34	19	7	38	1.80
97842--97877	17	2.1	18	89	5	56	16	11	30	41	1.83
97986--98010	10	2.5	10	100	0	50	32	16	0	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103271--103342	3	23.3	3	86	8	92	38	0	0	61	0.96
104019--104062	23	1.9	23	90	0	70	29	18	29	22	1.97
104730--104887	62	2.6	62	92	1	264	51	8	10	30	1.65
104769--104867	31	3.2	31	64	16	87	55	5	10	29	1.54
105045--105077	9	3.8	9	84	8	50	45	0	0	54	0.99
105239--105297	21	2.7	22	73	5	66	22	23	20	33	1.97
105282--105368	40	2.2	40	93	0	147	35	18	18	27	1.94
105282--105432	20	7.6	20	79	5	117	30	20	20	28	1.98
106015--106047	9	3.8	9	84	8	50	45	0	0	54	0.99
108630--108659	11	2.7	11	89	0	51	26	26	10	36	1.88
112823--113056	67	3.5	67	87	4	316	32	23	18	26	1.97
112954--113459	112	4.5	113	87	4	693	30	23	16	30	1.96
112954--113446	225	2.2	225	89	4	735	30	22	16	30	1.96
113360--113458	49	2.0	49	84	3	128	29	20	17	33	1.95
115108--115266	62	2.6	61	90	3	264	51	8	9	30	1.64
115420--115452	9	3.8	9	84	8	50	45	0	0	54	0.99
127827--127887	32	1.9	32	83	6	79	42	0	19	37	1.52
128136--128200	23	2.8	23	95	0	112	16	23	27	32	1.96
129032--129072	21	2.0	21	100	0	82	26	24	24	24	2.00
129072--129124	22	2.4	22	90	0	79	24	20	11	43	1.85
130826--130851	2	13.0	2	100	0	52	50	0	0	50	1.00
134389--134449	32	1.9	32	83	6	79	42	0	19	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134879--134926	23	2.1	23	96	0	87	14	27	29	29	1.95
135550--135590	21	2.0	21	95	0	73	29	24	21	24	1.99
138687--138737	18	2.7	20	79	14	54	31	13	21	33	1.92
138910--138939	10	3.0	10	90	0	51	23	0	36	40	1.55

Tables:   1

The End!