Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008377.1 Hibiscus syriacus cultivar Beakdansim tig00111137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92755
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1546 original size:15 final size:15
Alignment explanation
Indices: 1526--1554 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1516 CACCTGAAGA
1526 GTAACTTCTATTAGT
1 GTAACTTCTATTAGT
1541 GTAACTTCTATTAG
1 GTAACTTCTATTAG
1555 GATTACGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (15 bp):
GTAACTTCTATTAGT
Found at i:3545 original size:31 final size:31
Alignment explanation
Indices: 3507--3633 Score: 191
Period size: 31 Copynumber: 4.1 Consensus size: 31
3497 GAGTCGAGGG
*
3507 TTACCTATGTTCTTCGAGACATATGGACAGA
1 TTACCTATGTTCTTCGGGACATATGGACAGA
* *
3538 TTACCTATGTTCTTCGGGACATATGAACATA
1 TTACCTATGTTCTTCGGGACATATGGACAGA
* *
3569 TTACCTATGTTCTTCGGGATATATAGACAGA
1 TTACCTATGTTCTTCGGGACATATGGACAGA
* *
3600 TTACCTATGTTCTTCGGGATATATGGATAGA
1 TTACCTATGTTCTTCGGGACATATGGACAGA
3631 TTA
1 TTA
3634 TTATACGAGC
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 87 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACAGA
Found at i:7434 original size:31 final size:31
Alignment explanation
Indices: 7396--7584 Score: 306
Period size: 31 Copynumber: 6.1 Consensus size: 31
7386 GAGTCGAGGG
7396 TTACCTATGTTCTTCGGGACATATGGACAAA
1 TTACCTATGTTCTTCGGGACATATGGACAAA
7427 TTACCTATGTTCTTCGGGACATATGGACAAA
1 TTACCTATGTTCTTCGGGACATATGGACAAA
* *
7458 TTACCTATGTTCTTCTGGACATATGGATAAA
1 TTACCTATGTTCTTCGGGACATATGGACAAA
*
7489 TTACCTATGTTCTTCGGGACATATGGACATA
1 TTACCTATGTTCTTCGGGACATATGGACAAA
* *
7520 TTACTTATGTTCTTCGGGACATATGGACATA
1 TTACCTATGTTCTTCGGGACATATGGACAAA
* * *
7551 TTACCTATGTTCTTCGAGACATATGAACAGA
1 TTACCTATGTTCTTCGGGACATATGGACAAA
7582 TTA
1 TTA
7585 TTATATGAGC
Statistics
Matches: 148, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 148 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACAAA
Found at i:8692 original size:160 final size:160
Alignment explanation
Indices: 8508--8811 Score: 466
Period size: 160 Copynumber: 1.9 Consensus size: 160
8498 AATTCAAACC
* * *
8508 ACATGCTCCTAAACTATAGTAGAATACATGTGTACTTTCAATTCCTCTTTTTGATAACAAGTTTT
1 ACATGCTCCTAAACCATAGTAGAATACATGTGTACTTTCAATTCCTCTTTTTAATAACAAATTTT
* * *
8573 TTATTTTTCAATTTAGTCCTTCAAATTTTCATAATTTCCTTATT-TCTTCAATTCATCATTTATT
66 TTACTTTTCAATTTAGTCCTTCAAATTTTCATAATCTCCTTGTTCT-TTCAATTCATCATTTATT
8637 TTAAGTCAATTTTTTTTATTAAATTTGAGCT
130 TTAAGTCAATTTTTTTTATTAAATTTGAGCT
* *
8668 ACATGCTTCTAAACCATAGTAGAATACATGTGTACTTTCAATTCCTCTTTTTAATAATAAATTTT
1 ACATGCTCCTAAACCATAGTAGAATACATGTGTACTTTCAATTCCTCTTTTTAATAACAAATTTT
* * ** *
8733 TTACTTTTCAATTTAGTCCTTTAATTTTTCATAATCTCCTTGTTCTTTCAATTTGTGATTTATTT
66 TTACTTTTCAATTTAGTCCTTCAAATTTTCATAATCTCCTTGTTCTTTCAATTCATCATTTATTT
*
8798 TAAGTCCATTTTTT
131 TAAGTCAATTTTTT
8812 ACCAAATTTG
Statistics
Matches: 129, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
160 128 0.99
161 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.07, T:0.50
Consensus pattern (160 bp):
ACATGCTCCTAAACCATAGTAGAATACATGTGTACTTTCAATTCCTCTTTTTAATAACAAATTTT
TTACTTTTCAATTTAGTCCTTCAAATTTTCATAATCTCCTTGTTCTTTCAATTCATCATTTATTT
TAAGTCAATTTTTTTTATTAAATTTGAGCT
Found at i:8982 original size:28 final size:28
Alignment explanation
Indices: 8950--9013 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 28
8940 CTTTTGACTA
*
8950 CAATTATTTG-CAAATTCTTTCTTCTCAT
1 CAATTATTTGACAAATT-TATCTTCTCAT
* **
8978 CAATTCTTTGACTCATTTATCTTCTCAT
1 CAATTATTTGACAAATTTATCTTCTCAT
9006 CAA-TATTT
1 CAATTATTT
9014 TACCCTCAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
27 4 0.13
28 22 0.73
29 4 0.13
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.50
Consensus pattern (28 bp):
CAATTATTTGACAAATTTATCTTCTCAT
Found at i:20572 original size:10 final size:10
Alignment explanation
Indices: 20557--20584 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
20547 CCAAGTAAGC
20557 CTGTTAACTA
1 CTGTTAACTA
20567 CTGTTAACTA
1 CTGTTAACTA
20577 CTGTTAAC
1 CTGTTAAC
20585 AGGCCACGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (10 bp):
CTGTTAACTA
Found at i:28120 original size:18 final size:18
Alignment explanation
Indices: 28073--28154 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
28063 ACCGAACTGG
*
28073 GTTGACCTGACCCGAACC
1 GTTGACCTGACTCGAACC
* *
28091 AATTTTACCTGACTCGAACC
1 --GTTGACCTGACTCGAACC
*
28111 GTTGACCTGA-TCCGAAACT
1 GTTGACCTGACT-CG-AACC
* *
28130 GTTGACCTGATTCGAACT
1 GTTGACCTGACTCGAACC
28148 GTTGACC
1 GTTGACC
28155 AGTCAGACCA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
17 1 0.02
18 21 0.40
19 15 0.28
20 16 0.30
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (18 bp):
GTTGACCTGACTCGAACC
Found at i:28135 original size:19 final size:18
Alignment explanation
Indices: 28105--28154 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
28095 TTACCTGACT
*
28105 CGAACCGTTGACCTGATC
1 CGAACTGTTGACCTGATC
*
28123 CGAAACTGTTGACCTGATT
1 CG-AACTGTTGACCTGATC
28142 CGAACTGTTGACC
1 CGAACTGTTGACC
28155 AGTCAGACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 13 0.45
19 16 0.55
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (18 bp):
CGAACTGTTGACCTGATC
Found at i:28857 original size:18 final size:18
Alignment explanation
Indices: 28820--28857 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
28810 ATTTTAAGAT
*
28820 TTATATTCGATTTAAATA
1 TTATATTCGATTCAAATA
*
28838 TTATATTCGATTCAATTA
1 TTATATTCGATTCAAATA
28856 TT
1 TT
28858 CGAATATCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (18 bp):
TTATATTCGATTCAAATA
Found at i:30681 original size:79 final size:81
Alignment explanation
Indices: 30563--30730 Score: 252
Period size: 79 Copynumber: 2.1 Consensus size: 81
30553 TTTAGGAAAA
* *
30563 TATTTTAAATATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTGTT-AGTATTTC
1 TATTTTAAATA-TATATTTTATCTTTATTTTAGATATTTTAGTTTAAATA-GTGTTAAGTATTTC
30627 AATTAGGATTTAAGATAT
64 AATTAGGATTTAAGATAT
* * *
30645 TATTTTAAATA-GTATTTTAT-TTTATTTTAGATATTTTAGTTTAAATAGTTTTAAGTATTTTAA
1 TATTTTAAATATATATTTTATCTTTATTTTAGATATTTTAGTTTAAATAGTGTTAAGTATTTCAA
30708 TTAGGATTTAAGATAT
66 TTAGGATTTAAGATAT
30724 TATTTTA
1 TATTTTA
30731 CGAATTATAT
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
78 4 0.05
79 57 0.71
80 8 0.10
82 11 0.14
ACGTcount: A:0.32, C:0.01, G:0.11, T:0.55
Consensus pattern (81 bp):
TATTTTAAATATATATTTTATCTTTATTTTAGATATTTTAGTTTAAATAGTGTTAAGTATTTCAA
TTAGGATTTAAGATAT
Found at i:36753 original size:2 final size:2
Alignment explanation
Indices: 36746--36770 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36736 CCAATCTACA
36746 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
36771 ATAATTTACG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36946 original size:13 final size:12
Alignment explanation
Indices: 36928--36979 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
36918 TCAATGATGC
36928 TAAATGAGCGTCA
1 TAAATG-GCGTCA
36941 TAAATGCGCGTCA
1 TAAATG-GCGTCA
*
36954 TAAAT-GTGTCA
1 TAAATGGCGTCA
36965 TAAATGTGCGTCA
1 TAAATG-GCGTCA
36978 TA
1 TA
36980 GATTTATGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 10 0.29
13 24 0.71
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (12 bp):
TAAATGGCGTCA
Found at i:37307 original size:16 final size:16
Alignment explanation
Indices: 37286--37316 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37276 TTTATCCCAA
37286 TTTATTTATTTTTTTG
1 TTTATTTATTTTTTTG
37302 TTTATTTATTTTTTT
1 TTTATTTATTTTTTT
37317 ATCTCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (16 bp):
TTTATTTATTTTTTTG
Found at i:38891 original size:21 final size:21
Alignment explanation
Indices: 38867--38913 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
38857 AATTTCACAA
*
38867 GAAAAGTTGGTTACATCCAAG
1 GAAAAGCTGGTTACATCCAAG
* *
38888 GAAAAGCTGGTTGCATCCCAG
1 GAAAAGCTGGTTACATCCAAG
38909 GAAAA
1 GAAAA
38914 ATTCCAAAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (21 bp):
GAAAAGCTGGTTACATCCAAG
Found at i:39972 original size:32 final size:32
Alignment explanation
Indices: 39936--40009 Score: 103
Period size: 32 Copynumber: 2.3 Consensus size: 32
39926 GCATCATTAA
*
39936 AGATTCAACAGCAAATGTTGAGGCATCTTTGG
1 AGATTCAACAGCAAATATTGAGGCATCTTTGG
* *
39968 AGATTCAACATCGAATATTGAGGCATCTTTGG
1 AGATTCAACAGCAAATATTGAGGCATCTTTGG
* *
40000 GGATTTAACA
1 AGATTCAACA
40010 TCATGATGCG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (32 bp):
AGATTCAACAGCAAATATTGAGGCATCTTTGG
Found at i:40838 original size:135 final size:134
Alignment explanation
Indices: 40607--40849 Score: 346
Period size: 135 Copynumber: 1.8 Consensus size: 134
40597 TATCACCTTT
** *
40607 AGATGGCCAGAACTCTTCATCGTGTATGAGCCGTGTCATCACCTGACCAGATATCCTCATTATGT
1 AGATGGCCAGAACTCTTCATCACGTATGAGCAGTGTCATCACCTGACCAGATATCCTCATTATGT
* * *
40672 AGGAGTCGTGTCAATCCTTGATAACCAGAACTCTTTATCACGTGTCAGCCGTGTTATCACCCTTC
66 AGGAGTCGTGTCAACCCTTGACAACCAGAACTCTTCATCACGTGTCAGCCGTGTTATCACCCTTC
40737 CTAA
131 CTAA
* *
40741 AGATGGCCAAGAACTCTTCATCACGTATGAGCAGTGTCATC-CCTTGACTAGATCTCCTCATTAT
1 AGATGGCC-AGAACTCTTCATCACGTATGAGCAGTGTCATCACC-TGACCAGATATCCTCATTAT
* * *
40805 GTAGGAGTCTTGTC-ACCCTTAGACGACCCGAACTCTTCATCACGT
64 GTAGGAGTCGTGTCAACCCTT-GACAACCAGAACTCTTCATCACGT
40850 ATGAGAAGTG
Statistics
Matches: 95, Mismatches: 11, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
134 15 0.16
135 80 0.84
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (134 bp):
AGATGGCCAGAACTCTTCATCACGTATGAGCAGTGTCATCACCTGACCAGATATCCTCATTATGT
AGGAGTCGTGTCAACCCTTGACAACCAGAACTCTTCATCACGTGTCAGCCGTGTTATCACCCTTC
CTAA
Found at i:42706 original size:5 final size:5
Alignment explanation
Indices: 42696--42726 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
42686 CGCGTTTCAC
*
42696 TTTTA TTTTA TTTCA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
42727 CTTTGAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:42716 original size:15 final size:16
Alignment explanation
Indices: 42690--42723 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
42680 TTTTATCGCG
42690 TTTCACTTTTATTTTA
1 TTTCACTTTTATTTTA
42706 TTTCA-TTTTATTTTA
1 TTTCACTTTTATTTTA
42721 TTT
1 TTT
42724 TATCTTTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTCACTTTTATTTTA
Found at i:47645 original size:21 final size:21
Alignment explanation
Indices: 47617--47671 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
47607 ACCGTGATTG
47617 CGGCCGTCGCGGGCGCTATTA
1 CGGCCGTCGCGGGCGCTATTA
* * *
47638 CGGTCGTCGCGGACGCTATTG
1 CGGCCGTCGCGGGCGCTATTA
47659 CGGCCGTCGCGGG
1 CGGCCGTCGCGGG
47672 TAACTCGGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.07, C:0.33, G:0.42, T:0.18
Consensus pattern (21 bp):
CGGCCGTCGCGGGCGCTATTA
Found at i:52379 original size:29 final size:30
Alignment explanation
Indices: 52280--52380 Score: 102
Period size: 29 Copynumber: 3.5 Consensus size: 30
52270 CTTAGTAAAA
52280 TAAAGGACT-AAATAGCAAAAACAGAAATT
1 TAAAGGACTAAAATAGCAAAAACAGAAATT
* * *
52309 TACAGGACTAAACA-A-CAAAAACAAAAACT
1 TAAAGGACTAAA-ATAGCAAAAACAGAAATT
* * * *
52338 TAAATGAGTAAAATAGTAAAAATAGAAATT
1 TAAAGGACTAAAATAGCAAAAACAGAAATT
52368 TAAA-GACTAAAAT
1 TAAAGGACTAAAAT
52381 GGCATTATCA
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
28 1 0.02
29 38 0.67
30 17 0.30
31 1 0.02
ACGTcount: A:0.60, C:0.10, G:0.11, T:0.19
Consensus pattern (30 bp):
TAAAGGACTAAAATAGCAAAAACAGAAATT
Found at i:53657 original size:3 final size:3
Alignment explanation
Indices: 53640--53713 Score: 53
Period size: 3 Copynumber: 25.3 Consensus size: 3
53630 TTTCCCCATT
* * * * * *
53640 TTA TT- TTA ATA TTA TTA TTA ATA TTA TTA TT- TTA ATA ATA ATA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
53686 ATA ATA TTA TTA TTA TTA ATA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
53714 AGGCACGAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
2 4 0.07
3 57 0.93
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:53666 original size:9 final size:9
Alignment explanation
Indices: 53652--53712 Score: 61
Period size: 9 Copynumber: 6.9 Consensus size: 9
53642 ATTTTAATAT
53652 TATTATTAA
1 TATTATTAA
53661 TATTATT-A
1 TATTATTAA
* *
53669 TTTTAATAA
1 TATTATTAA
* *
53678 TAATAATAA
1 TATTATTAA
* *
53687 TAATATTAT
1 TATTATTAA
53696 TATTATTAA
1 TATTATTAA
53705 TATTATTA
1 TATTATTA
53713 TAGGCACGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
8 6 0.14
9 37 0.86
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TATTATTAA
Found at i:55930 original size:3 final size:3
Alignment explanation
Indices: 55922--55969 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
55912 ACAAAATGAT
* *
55922 TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA -AT TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
55968 TA
1 TA
55970 TTTTTGGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 3 0.08
3 36 0.92
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:58186 original size:17 final size:17
Alignment explanation
Indices: 58110--58211 Score: 87
Period size: 17 Copynumber: 5.8 Consensus size: 17
58100 AAAAGTGAGT
* *
58110 TGCAATCTAAAGTGTGG
1 TGCAACCTAAAATGTGG
* *
58127 TGCAACTTAAAAAGTGG
1 TGCAACCTAAAATGTGG
* *
58144 TGCAACCCGGAAAAAGTGG
1 TGCAA-CC-TAAAATGTGG
58163 TGCAACCTAAAATGTGG
1 TGCAACCTAAAATGTGG
* ** *
58180 TACAACCGTAAAATAAGT
1 TGCAACC-TAAAATGTGG
58198 TGCAACCTAAAATG
1 TGCAACCTAAAATG
58212 ACAACGATAA
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
17 38 0.56
18 16 0.24
19 14 0.21
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.22
Consensus pattern (17 bp):
TGCAACCTAAAATGTGG
Found at i:58846 original size:49 final size:49
Alignment explanation
Indices: 58767--58866 Score: 121
Period size: 49 Copynumber: 2.0 Consensus size: 49
58757 TTATTCAAAT
* * * * * *
58767 AATATCTTTTTATTTAAACTAGTCATGTCGAAGTGACGAATTTCAATAA
1 AATATATTTTTATTAAAACTAGTCAAGTCGAACTAACAAATTTCAATAA
*
58816 AATATATTTTTATTAAAATGTA-TCAAGTCGAACTAACAAATTTCAATAA
1 AATATATTTTTATTAAAA-CTAGTCAAGTCGAACTAACAAATTTCAATAA
58865 AA
1 AA
58867 AAATATATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
49 41 0.95
50 2 0.05
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (49 bp):
AATATATTTTTATTAAAACTAGTCAAGTCGAACTAACAAATTTCAATAA
Found at i:65664 original size:85 final size:85
Alignment explanation
Indices: 65519--65691 Score: 301
Period size: 85 Copynumber: 2.0 Consensus size: 85
65509 GATGAAAAAA
*
65519 GAAGGGAACAAAGTTGTTAACGATACGACGGGGATGTGTTCTTTTTTGGTACAAGGTTTAATTTT
1 GAAGGGAACAAAGTTGTTAACGATACGACGGGGATGTGTTCTTTTTTGGTAAAAGGTTTAATTTT
*
65584 AAAGGAGAAAGGAACTCTCT
66 AAAGGAGAAAGAAACTCTCT
* * *
65604 GAAGGGAACAAAGTTTTTAACGATACGACGGGGCTGTGTTCTTTTTTGGTAAAAGTTTTAATTTT
1 GAAGGGAACAAAGTTGTTAACGATACGACGGGGATGTGTTCTTTTTTGGTAAAAGGTTTAATTTT
65669 AAAGGAGAAAGAAACTCTCT
66 AAAGGAGAAAGAAACTCTCT
65689 GAA
1 GAA
65692 TAAACATGAG
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (85 bp):
GAAGGGAACAAAGTTGTTAACGATACGACGGGGATGTGTTCTTTTTTGGTAAAAGGTTTAATTTT
AAAGGAGAAAGAAACTCTCT
Found at i:66298 original size:49 final size:49
Alignment explanation
Indices: 66226--66322 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 49
66216 ATCGTAACCG
66226 AGTAACTATTTGGAGCAGGTTTTGATGAAGGTAACGGCAAAGGTGCTCA
1 AGTAACTATTTGGAGCAGGTTTTGATGAAGGTAACGGCAAAGGTGCTCA
* *
66275 AGTAATTATTTGGTGCAGGTTTTGATGAAGGTAACGGCAAAGGTGCTC
1 AGTAACTATTTGGAGCAGGTTTTGATGAAGGTAACGGCAAAGGTGCTC
66323 GAGAACAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (49 bp):
AGTAACTATTTGGAGCAGGTTTTGATGAAGGTAACGGCAAAGGTGCTCA
Found at i:68957 original size:2 final size:2
Alignment explanation
Indices: 68950--68989 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
68940 ATTTAAACAA
68950 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68990 GACTAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70386 original size:3 final size:3
Alignment explanation
Indices: 70378--70425 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
70368 ATTTATTTAT
*
70378 ATA ATA ATA ATA ATA ATA TATA TTA ATA ATA ATA ATA A-A ATTA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA A-TA ATA
70424 AT
1 AT
70426 TTTAATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
2 2 0.05
3 33 0.82
4 5 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:70397 original size:19 final size:19
Alignment explanation
Indices: 70375--70414 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
70365 GTAATTTATT
70375 TATATAATAATAATAATAA
1 TATATAATAATAATAATAA
*
70394 TATATATTAATAATAATAA
1 TATATAATAATAATAATAA
70413 TA
1 TA
70415 AAATTAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TATATAATAATAATAATAA
Found at i:71331 original size:378 final size:381
Alignment explanation
Indices: 70564--71505 Score: 1710
Period size: 378 Copynumber: 2.5 Consensus size: 381
70554 GAAATGTTGA
* * * *
70564 AAACATCATGCACTAAAGGGCTTACAGATGATCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* * *
70629 AGGTTTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCA
66 AGG-CTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCA
*
70694 AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTT
130 AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTT
70759 TGAAAACATCAAAAAAAATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
195 TGAAAACATCAAAAAAAATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
70824 ACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
260 ACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGG
70889 ACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGG
325 ACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGG
*
70946 AAACATCATGCGCTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
71011 AGGCTTTTTGGAAACATCATGCACTGAAGGACGTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
* *
71076 AAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAATGACTTACAGATGACCCTAAGGCTTT
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTT
*
71141 GAAAACATC-AAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAA-GACTTACAGATGA
196 GAAAACATCAAAAAAAATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
71204 -CCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
261 CCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
71268 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGG
326 CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGG
*
71324 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
71389 AGGCTTTTTGGAAACATCATGCGCTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
*
71454 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGATTTACAGATG
131 AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
71506 TGGGAAATAG
Statistics
Matches: 540, Mismatches: 20, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
378 295 0.55
379 13 0.02
380 40 0.07
381 129 0.24
382 63 0.12
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (381 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
AAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTT
GAAAACATCAAAAAAAATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGA
CCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGA
CTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGG
Found at i:71532 original size:76 final size:76
Alignment explanation
Indices: 70564--71505 Score: 1672
Period size: 76 Copynumber: 12.4 Consensus size: 76
70554 GAAATGTTGA
* * * * *
70564 AAACATCATGCACTAAAGGGCTTACAGATGATCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
*
70629 AGGTTTTTTTGG
66 AGG-CTTTTTGG
* * *
70641 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
70706 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
70717 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAAAATCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATC-AAAAAGATCCCG
70782 AAGGCTTTTTGG
65 AAGGCTTTTTGG
*
70794 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
70859 AGGCTTTTTGG
66 AGGCTTTTTGG
70870 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
70935 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
70946 AAACATCATGCGCTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
71011 AGGCTTTTTGG
66 AGGCTTTTTGG
*
71022 AAACATCATGCACTGAAGGACGTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
71087 AGGCTTTTTGG
66 AGGCTTTTTGG
*
71098 AAACATCATGCACTGAATGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
71163 AGGCTTTTTGG
66 AGGCTTTTTGG
*
71174 AAACATCATGCACTGAA-GACTTACAGATGA-CCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
71237 AGGCTTTTTGG
66 AGGCTTTTTGG
71248 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
71313 AGGCTTTTTGG
66 AGGCTTTTTGG
71324 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
71389 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
71400 AAACATCATGCGCTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
71465 AGGCTTTTTGG
66 AGGCTTTTTGG
*
71476 AAACATCATGCACTGAAGGATTTACAGATG
1 AAACATCATGCACTGAAGGACTTACAGATG
71506 TGGGAAATAG
Statistics
Matches: 837, Mismatches: 25, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
74 60 0.07
75 26 0.03
76 614 0.73
77 137 0.16
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (76 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
AGGCTTTTTGG
Found at i:72209 original size:22 final size:23
Alignment explanation
Indices: 72181--72237 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 23
72171 CATAAAGCTT
72181 TCATCTTTGAA-AAGAGAATATA
1 TCATCTTTGAAGAAGAGAATATA
*
72203 TCATCTTT-AAGAAGAGAATCTA
1 TCATCTTTGAAGAAGAGAATATA
*
72225 TAATCTTTGAAGA
1 TCATCTTTGAAGA
72238 GTGTAGATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 2 0.06
22 25 0.81
23 4 0.13
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.33
Consensus pattern (23 bp):
TCATCTTTGAAGAAGAGAATATA
Found at i:72684 original size:54 final size:54
Alignment explanation
Indices: 72602--72757 Score: 233
Period size: 54 Copynumber: 2.9 Consensus size: 54
72592 AGAATAGCAG
* * * *
72602 GTTCGTAAAACATTTGA-AAGCTCATTCATCCTCTCCTGTGGCTTCTGCTCAGAT
1 GTTCGTAAAACATTTGACAA-CACATTCATCCTTTCTTGTGGCTTCTGCTCAGAC
* *
72656 GTTCGTAAAACATTTGACCACACATTCATCCTTTCTTGTGGTTTCTGCTCAGAC
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTGGCTTCTGCTCAGAC
*
72710 GTTCGTAAGACATTTGACAACACATTCATCCTTTCTTGTGGCTTCTGC
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTGGCTTCTGC
72758 CAAGATTTCT
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 91 0.99
55 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.37
Consensus pattern (54 bp):
GTTCGTAAAACATTTGACAACACATTCATCCTTTCTTGTGGCTTCTGCTCAGAC
Found at i:83653 original size:3 final size:3
Alignment explanation
Indices: 83645--83688 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
83635 ATTTATTTAT
83645 ATA ATA ATA ATA AT- ATA TATA ATA ATA ATA ATA A-A ATTA ATA AT
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA A-TA ATA AT
83689 TTTAATTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
2 4 0.11
3 28 0.76
4 5 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:83665 original size:18 final size:18
Alignment explanation
Indices: 83642--83677 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
83632 GTAATTTATT
83642 TATATAATAATAATAATA
1 TATATAATAATAATAATA
83660 TATATAATAATAATAATA
1 TATATAATAATAATAATA
83678 AAATTAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TATATAATAATAATAATA
Found at i:83685 original size:18 final size:18
Alignment explanation
Indices: 83643--83688 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
83633 TAATTTATTT
*
83643 ATATAATAATAATAATAT
1 ATATAATAATAATAATAA
83661 ATATAATAATAATAATAA
1 ATATAATAATAATAATAA
83679 A-ATTAATAAT
1 ATA-TAATAAT
83689 TTTAATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATAATAATAATAATAA
Found at i:87288 original size:22 final size:22
Alignment explanation
Indices: 87257--87298 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
87247 AGGTTTGTTC
*
87257 TTTATTTAAAT-TTAACAATAAA
1 TTTATATAAATATT-ACAATAAA
87279 TTTATATAAATATTACAATA
1 TTTATATAAATATTACAATA
87299 TACTAGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTATATAAATATTACAATAAA
Found at i:91170 original size:3 final size:3
Alignment explanation
Indices: 91157--91231 Score: 77
Period size: 3 Copynumber: 24.7 Consensus size: 3
91147 TTCATTTAAA
91157 TAT TA- TAT TAT TAT TAT TA- TAT ATAT ATAT TA- TAT TAT ATAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT TA-T
91203 TAT ATAT TAT TA- TAT TAT TAT TAT TAT TA
1 TAT -TAT TAT TAT TAT TAT TAT TAT TAT TA
91232 AAAAAAATTT
Statistics
Matches: 64, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
2 8 0.12
3 40 0.62
4 16 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:91173 original size:11 final size:11
Alignment explanation
Indices: 91157--91231 Score: 79
Period size: 11 Copynumber: 6.9 Consensus size: 11
91147 TTCATTTAAA
91157 TATTATATTAT
1 TATTATATTAT
91168 TA-T-TATTAT
1 TATTATATTAT
91177 ATATATATATTA-
1 -TAT-TATATTAT
91189 TATTATA-TAT
1 TATTATATTAT
91199 TATT-TATATAT
1 TATTATAT-TAT
91210 TATTATATTAT
1 TATTATATTAT
91221 TATTATTATTA
1 TATTA-TATTA
91232 AAAAAAATTT
Statistics
Matches: 55, Mismatches: 0, Indels: 17
0.76 0.00 0.24
Matches are distributed among these distances:
9 10 0.18
10 11 0.20
11 20 0.36
12 9 0.16
13 5 0.09
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTATATTAT
Found at i:91187 original size:16 final size:16
Alignment explanation
Indices: 91160--91223 Score: 71
Period size: 16 Copynumber: 3.9 Consensus size: 16
91150 ATTTAAATAT
91160 TATAT-TATTATTAT-
1 TATATATATTATTATA
91174 TATATATATATATTATA
1 TATATATAT-TATTATA
91191 T-TATATATTATTTATA
1 TATATATATTA-TTATA
91207 TATTATTATATTATTAT
1 TA-TA-TATATTATTAT
91224 TATTATTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.12
15 5 0.12
16 19 0.44
17 1 0.02
18 6 0.14
19 7 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATATATATTATTATA
Done.