Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008379.1 Hibiscus syriacus cultivar Beakdansim tig00111139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95590

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1997--2024
2
14.0
2
100
0
56
50
0
0
50
1.00
2996--3136
2
74.0
2
82
9
179
51
0
0
48
1.00
4958--5017
24
2.5
24
80
0
66
50
20
15
15
1.79
9235--9271
18
2.0
18
89
5
56
48
0
2
48
1.15
11054--11082
2
14.5
2
100
0
58
48
0
0
51
1.00
15705--15737
12
2.8
12
90
4
50
54
0
3
42
1.15
16985--17023
3
13.0
3
94
0
69
64
0
2
33
1.08
19410--19464
23
2.3
23
75
3
56
20
20
3
56
1.57
19541--19581
19
2.2
19
86
8
57
29
0
0
70
0.87
20628--20665
19
2.1
19
90
5
60
7
21
0
71
1.11
23444--24467
106
9.7
106
94
0
1753
32
25
18
22
1.97
26462--26516
23
2.3
23
75
3
56
20
20
3
56
1.57
26593--26633
19
2.2
19
86
8
57
29
0
0
70
0.87
29458--29490
12
2.8
12
90
4
50
54
0
3
42
1.15
32324--32350
3
9.0
3
100
0
54
66
0
0
33
0.92
32621--32653
12
2.8
12
90
4
50
54
0
3
42
1.15
34285--34315
2
15.5
2
100
0
62
48
0
0
51
1.00
35421--35447
3
9.0
3
100
0
54
66
0
0
33
0.92
35719--35751
12
2.8
12
90
4
50
54
0
3
42
1.15
37450--37474
2
12.5
2
100
0
50
48
0
0
52
1.00
38578--38604
3
9.0
3
100
0
54
66
0
0
33
0.92
38875--38907
12
2.8
12
90
4
50
54
0
3
42
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41723--41752
3
10.0
3
100
0
60
66
0
0
33
0.92
44867--44893
3
9.0
3
100
0
54
66
0
0
33
0.92
45168--45200
12
2.8
12
90
4
50
54
0
3
42
1.15
48022--48048
3
9.0
3
100
0
54
66
0
0
33
0.92
48323--48355
12
2.8
12
90
4
50
54
0
3
42
1.15
51478--51510
12
2.8
12
90
4
50
54
0
3
42
1.15
57488--57525
16
2.4
16
82
4
51
63
0
5
31
1.17
57688--57771
11
7.3
11
71
19
55
59
2
3
34
1.28
58181--58280
35
2.8
36
86
6
130
31
16
15
38
1.89
58743--60132
210
6.7
203
84
7
1453
21
20
25
32
1.97
58743--60132
105
13.3
103
81
8
1151
21
20
25
32
1.97
60806--61115
37
8.9
37
69
14
187
38
12
20
28
1.89
60839--61115
102
2.7
101
84
2
351
38
12
20
28
1.89
61046--61115
36
1.9
36
91
5
115
38
14
24
22
1.91
61597--61632
18
2.0
18
94
0
63
41
33
8
16
1.78
62067--62110
22
2.0
22
91
8
72
27
11
22
38
1.88
62700--62752
23
2.3
24
83
6
65
0
15
9
75
1.04
62714--62761
16
2.9
16
80
20
55
0
12
8
79
0.94
62711--62768
24
2.5
24
83
8
75
0
10
8
81
0.89
67704--67791
8
11.3
7
71
23
52
79
6
12
1
0.98
67704--67797
16
5.9
16
73
18
63
79
6
12
1
0.96
70052--71045
105
9.5
105
87
1
1316
34
24
17
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70052--71045
211
4.7
210
88
1
1327
34
24
17
23
1.96
71593--71651
31
1.9
31
92
0
100
42
13
13
30
1.83
73298--73324
3
9.0
3
100
0
54
66
0
0
33
0.92
73503--73565
25
2.5
24
78
14
65
52
4
1
41
1.32
73592--73624
12
2.8
12
90
4
50
54
0
3
42
1.15
76444--76479
3
12.0
3
100
0
72
66
0
0
33
0.92
76649--76715
29
2.2
31
81
5
75
52
5
1
40
1.35
76744--76776
12
2.8
12
90
4
50
54
0
3
42
1.15
78293--78336
23
2.0
23
81
4
54
50
2
6
40
1.42
84548--84597
2
26.5
2
88
11
79
48
0
0
52
1.00
84551--84597
24
2.0
24
100
0
94
48
0
0
51
1.00
85632--85670
10
3.7
10
80
12
51
43
2
0
53
1.14
85813--85847
17
2.1
16
89
5
52
51
2
0
45
1.16
85959--85991
12
2.8
12
90
4
50
54
0
3
42
1.15
86252--86282
14
2.1
15
94
5
55
29
12
0
58
1.35
86314--86353
18
2.2
18
86
8
55
42
2
2
52
1.28
87695--87731
2
18.5
2
94
0
65
45
2
0
51
1.15
89097--89128
11
2.8
12
90
9
50
56
0
3
40
1.15
89382--89412
14
2.1
15
94
5
55
29
12
0
58
1.35
90784--90813
2
15.5
2
93
6
53
46
0
0
53
1.00
91865--91922
19
3.2
19
80
9
50
50
1
1
46
1.22
91898--91933
3
12.0
3
88
11
56
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91898--91933
17
2.2
16
95
5
63
66
0
0
33
0.92
92047--92086
21
2.0
20
90
5
62
47
2
2
47
1.29
94798--94827
3
10.0
3
100
0
60
66
0
0
33
0.92

Tables:   1

The End!