genome.fa.s838.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000838.1 Hibiscus syriacus cultivar Beakdansim tig00001620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115034

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4781--4869	43	2.1	43	85	4	117	28	12	33	25	1.92
6407--6453	2	23.5	2	93	0	76	53	2	0	44	1.12
8283--8320	17	2.2	17	90	9	60	71	0	0	28	0.87
9047--9075	2	14.5	2	100	0	58	48	0	0	51	1.00
12897--12954	20	2.7	20	81	10	62	29	22	17	31	1.96
12942--13077	63	2.2	63	84	5	168	24	23	16	35	1.95
17760--17817	20	2.7	20	86	10	71	27	22	18	31	1.97
17805--17942	64	2.2	64	80	5	154	24	22	18	34	1.96
21956--22189	75	3.1	74	85	4	308	31	15	11	41	1.83
22192--22453	39	6.7	39	86	1	339	29	15	16	38	1.90
22191--22453	116	2.3	118	85	3	361	30	15	16	38	1.90
22976--23219	87	2.8	87	89	3	373	34	23	16	25	1.96
23678--23752	21	3.7	20	71	20	66	20	4	2	73	1.12
24993--25146	78	2.0	78	88	1	220	25	13	18	42	1.86
27519--27548	12	2.5	12	94	0	51	80	0	13	6	0.91
29620--29652	3	11.3	3	87	6	50	39	0	0	60	0.97
29620--29652	17	1.9	17	93	0	57	39	0	0	60	0.97
29615--29655	9	4.6	9	84	9	57	43	0	0	56	0.99
31594--31686	21	4.6	20	78	4	96	38	18	24	18	1.92
31591--31686	41	2.3	41	98	0	183	39	17	23	18	1.92
31594--31686	20	4.6	20	78	4	96	38	18	24	18	1.92
31613--31747	41	3.3	41	81	6	123	37	20	21	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31675--31769	20	4.7	20	80	2	91	34	24	17	23	1.96
31957--32000	22	2.0	22	95	0	79	20	45	15	18	1.85
32264--32301	20	1.9	20	88	0	58	13	15	21	50	1.78
33622--33666	18	2.5	18	85	0	63	26	42	15	15	1.87
34123--34189	20	3.4	20	81	2	73	38	23	22	14	1.92
34178--34235	14	3.9	14	79	16	71	48	25	17	8	1.75
34162--34252	32	2.8	33	94	3	166	47	23	18	10	1.80
34123--34257	19	7.6	19	71	19	85	42	23	20	12	1.86
34264--34380	50	2.3	52	91	4	184	11	21	23	43	1.84
34283--34418	18	7.4	19	80	9	124	13	20	24	41	1.88
34345--34399	20	2.8	19	89	5	83	16	25	23	34	1.95
34264--34418	39	4.4	37	74	14	123	12	20	24	43	1.86
36270--36305	14	2.6	14	90	0	54	30	0	22	47	1.52
36422--36489	19	3.8	19	85	14	101	47	17	22	13	1.82
36508--36564	20	2.8	20	94	0	96	21	22	17	38	1.93
36932--36967	14	2.6	14	90	0	54	30	0	22	47	1.52
38212--38270	24	2.5	24	82	0	73	28	16	18	35	1.93
38444--38468	12	2.1	12	100	0	50	72	0	28	0	0.86
40763--40860	19	5.7	19	69	22	90	43	19	24	12	1.85
40763--40856	33	2.8	33	98	0	179	43	19	24	12	1.85
41005--41041	14	2.6	14	91	0	65	45	24	0	29	1.53
42414--42494	21	3.9	21	66	6	65	23	20	33	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42430--42521	42	2.2	42	86	0	121	23	15	38	22	1.92
44474--44614	19	7.8	19	69	17	86	43	19	24	13	1.86
44499--44597	33	3.0	33	89	1	144	39	21	26	13	1.90
44569--44619	19	2.7	19	96	0	93	45	21	21	11	1.84
44615--44681	19	3.5	19	79	2	71	11	16	22	49	1.78
45223--45300	41	1.9	41	86	0	111	21	16	21	39	1.92
45204--45297	20	4.7	20	80	2	89	23	18	24	34	1.96
45286--45381	41	2.3	41	96	0	138	19	23	16	39	1.92
45286--45361	21	3.7	21	75	3	82	18	25	17	39	1.91
45312--45378	20	3.3	20	79	4	89	19	22	17	40	1.92
47134--47193	2	30.0	2	100	0	120	50	0	0	50	1.00
48498--48610	51	2.2	51	88	1	172	33	15	14	37	1.87
53936--53989	24	2.2	24	83	0	72	66	12	11	9	1.44
54025--54055	2	15.5	2	100	0	62	51	0	0	48	1.00
58785--58837	19	2.8	19	97	0	97	28	20	15	35	1.93
66288--66319	12	2.6	12	95	5	55	9	6	3	81	0.97
67131--67328	106	1.9	106	92	0	333	26	18	25	29	1.98
71588--71614	13	2.1	13	100	0	54	7	7	7	77	1.12
72430--72626	105	1.9	106	91	1	324	26	18	26	28	1.98
80588--80618	15	2.1	14	94	5	53	9	12	0	77	0.99
80565--80633	27	2.5	28	81	13	72	11	13	4	71	1.29
91442--91494	28	1.9	27	84	3	70	49	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92489--92561	23	3.2	23	88	7	105	38	1	0	60	1.06
92642--92677	17	2.1	17	100	0	72	36	0	33	30	1.58
103204--103231	7	4.0	7	100	0	56	85	0	14	0	0.59
109039--109646	310	2.0	309	98	1	1164	29	17	17	34	1.94
114686--114739	25	2.2	25	90	6	85	31	7	14	46	1.73

Tables:   1

The End!