genome.fa.s8381.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008381.1 Hibiscus syriacus cultivar Beakdansim tig00111141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100594

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128--191	30	2.2	28	89	10	94	29	3	12	54	1.53
332--498	20	8.7	21	76	16	132	21	19	20	38	1.94
334--478	73	2.0	74	89	4	222	22	19	21	37	1.95
337--498	40	4.2	41	75	17	150	22	19	21	37	1.95
340--531	93	2.1	93	84	5	246	22	19	20	37	1.94
470--536	34	2.0	34	91	2	109	19	22	19	38	1.93
536--606	20	3.7	20	77	11	76	22	18	22	36	1.95
545--601	18	3.1	18	76	14	62	22	19	21	36	1.95
2835--2871	14	2.6	14	91	4	56	5	21	21	51	1.68
9161--9200	21	1.9	21	89	0	62	25	40	25	10	1.86
13530--13636	20	5.3	20	85	6	153	22	20	28	28	1.99
13543--13678	41	3.3	41	78	9	143	22	20	25	31	1.98
13543--13678	20	6.7	20	80	7	98	22	20	25	31	1.98
13530--13657	61	2.1	61	94	0	220	21	19	27	31	1.98
13530--13717	82	2.3	81	82	4	209	22	20	25	31	1.98
13731--13777	19	2.4	19	82	3	58	25	14	29	29	1.95
13743--13779	19	1.9	19	94	0	65	21	16	29	32	1.95
14295--14442	56	2.6	56	95	0	260	35	12	13	38	1.83
29307--29617	42	7.2	43	77	9	267	33	18	23	24	1.97
31372--31410	19	2.1	19	95	0	69	38	28	20	12	1.89
32904--32959	24	2.3	24	100	0	112	21	14	7	57	1.61
32904--32968	24	2.7	24	90	0	76	18	15	6	60	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42104--42148	22	2.0	22	86	4	63	62	8	15	13	1.54
45153--45327	80	2.2	82	86	2	237	37	17	16	29	1.91
45200--45359	40	4.0	40	87	1	203	38	17	13	30	1.88
56625--56658	17	1.9	18	94	5	61	32	2	0	64	1.08
56710--56743	2	17.0	2	87	0	50	47	2	0	50	1.16
67452--67486	1	35.0	1	88	0	52	94	5	0	0	0.32
67453--67487	18	2.0	17	94	5	61	91	8	0	0	0.42
68308--69139	105	7.9	105	92	1	1366	33	24	17	23	1.96
70372--70405	17	1.9	18	94	5	61	32	2	0	64	1.08
70457--70498	2	21.0	2	90	0	66	47	2	0	50	1.14
72536--72610	13	5.3	13	80	15	78	16	44	22	17	1.87
72514--72589	18	4.6	18	78	18	101	17	50	21	11	1.77
72554--72617	8	8.5	8	74	19	66	15	40	25	18	1.90
72518--72595	30	2.5	31	93	2	140	16	47	21	14	1.82
72587--72618	7	4.4	7	92	7	55	12	34	28	25	1.92
72571--72617	15	3.3	15	91	5	71	14	38	25	21	1.92
73930--73965	18	2.0	18	88	0	54	52	0	16	30	1.44
75092--75198	24	4.5	24	72	0	88	23	13	15	47	1.81
76233--76288	29	2.0	28	82	3	67	16	26	17	39	1.91
85030--85102	26	2.8	26	85	4	103	49	26	1	23	1.58
85805--85856	23	2.3	23	96	0	95	36	0	25	38	1.56
85845--85978	32	4.2	32	76	7	128	38	7	17	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86373--86483	37	3.0	37	94	0	195	39	14	14	31	1.86
86935--86994	3	19.7	3	79	16	61	26	3	0	70	1.03
86930--86976	13	3.6	13	85	5	60	29	2	0	68	1.02
86934--86994	23	2.5	25	82	12	74	26	3	0	70	1.02
87016--87076	26	2.3	28	86	11	92	39	8	1	50	1.42
87323--87380	30	1.9	30	82	6	73	13	18	3	63	1.43
90422--90472	14	3.7	14	92	7	79	74	5	19	0	1.02
90643--90684	21	2.0	21	100	0	84	38	28	9	23	1.86
92055--92171	36	3.2	36	82	9	139	26	17	13	41	1.87
92234--92492	83	3.1	83	81	5	288	33	23	18	23	1.97
92234--92532	83	3.6	85	80	6	202	33	23	18	24	1.97
92993--93100	37	2.9	37	95	0	189	40	15	13	29	1.86
93555--93616	3	19.7	3	78	15	63	27	4	0	67	1.10
93635--93692	26	2.3	25	85	11	82	37	10	1	50	1.47
93770--93802	16	1.9	18	88	11	52	18	15	0	66	1.25
94747--94782	4	9.0	4	100	0	72	75	0	0	25	0.81
95663--95716	18	3.1	18	89	10	85	50	0	0	50	1.00
99427--99483	16	3.7	16	90	4	91	59	17	10	12	1.60

Tables:   1

The End!