genome.fa.s8383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008383.1 Hibiscus syriacus cultivar Beakdansim tig00111145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85653

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3594--3654	21	3.0	20	80	4	68	24	32	26	16	1.96
8800--8835	15	2.4	15	90	0	63	47	5	0	47	1.25
8973--9003	10	3.1	10	95	0	53	16	9	41	32	1.80
11052--11089	12	3.2	12	89	10	53	55	0	0	44	0.99
27694--28665	48	20.3	48	75	1	730	23	45	6	24	1.76
27811--27897	27	3.4	27	66	18	78	24	49	6	19	1.72
27791--27914	24	5.2	24	60	7	63	21	52	6	19	1.68
27827--29186	288	4.8	288	90	4	2135	23	45	6	24	1.76
28558--28799	117	2.1	117	93	0	412	23	46	7	23	1.76
27827--28682	144	5.9	144	93	0	1442	23	45	6	24	1.76
28675--29186	48	10.7	48	73	6	401	23	45	6	24	1.77
28672--29186	96	5.4	96	74	2	442	23	45	6	24	1.77
28675--29186	144	3.6	144	97	0	943	23	45	6	24	1.77
29005--29399	216	1.8	216	86	2	569	23	47	6	22	1.74
29194--29619	96	4.4	96	85	2	460	24	46	5	23	1.73
29221--29619	48	8.3	48	83	2	415	25	46	5	22	1.73
29057--29300	120	2.0	120	88	0	362	24	46	5	22	1.73
29441--29523	24	3.5	24	68	12	71	26	44	7	21	1.78
29221--29628	144	2.8	141	81	3	458	25	46	5	22	1.73
29635--29675	6	6.8	6	85	0	55	19	51	2	26	1.59
32992--33035	12	3.5	13	81	12	56	4	45	36	13	1.64
33343--33389	20	2.4	19	80	16	51	25	2	14	57	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39019--39054	12	2.9	12	87	4	54	72	11	11	5	1.28
40781--41023	105	2.3	102	82	7	285	30	18	11	39	1.86
40969--41088	37	3.4	33	75	8	96	30	20	12	36	1.89
40987--41089	37	2.9	36	76	7	113	33	19	11	34	1.88
41332--41436	27	3.8	27	83	8	131	28	10	17	43	1.82
41342--41450	55	2.0	55	81	3	130	29	10	14	45	1.78
41389--41451	27	2.3	27	86	2	81	33	6	12	47	1.67
41445--41549	52	2.0	53	96	1	194	31	13	18	37	1.89
41537--41599	29	2.1	30	91	2	101	36	7	14	41	1.75
42044--42128	31	2.7	30	80	10	91	28	17	15	38	1.90
42470--42651	66	2.8	65	77	8	190	24	20	17	37	1.93
42653--42749	28	3.4	28	80	12	99	24	17	13	44	1.85
42768--43014	40	5.8	40	73	19	187	25	35	18	20	1.95
42757--43021	134	2.0	134	92	1	442	26	34	18	20	1.96
42758--43107	134	2.7	132	84	6	415	25	32	18	23	1.97
42992--43150	83	1.9	85	86	5	232	23	28	18	29	1.98
44044--44087	12	3.5	13	81	12	56	4	45	36	13	1.64
44395--44441	20	2.4	19	80	16	51	25	2	14	57	1.49
53242--53479	120	2.0	119	99	0	467	39	21	11	27	1.87
55953--55986	17	2.0	17	88	0	50	23	0	2	73	0.97
61854--61887	16	2.1	16	94	0	59	50	29	5	14	1.67
61994--62048	13	4.2	13	79	9	67	30	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65617--65661	21	2.1	21	87	0	63	31	28	24	15	1.96
67495--67539	23	2.0	23	86	0	63	20	26	26	26	1.99
71943--71987	18	2.5	18	82	7	56	24	20	15	40	1.91
75021--75085	31	2.1	31	100	0	130	43	4	6	46	1.49
77862--77982	31	3.9	31	90	1	170	35	21	17	25	1.95
77862--77982	63	1.9	62	86	1	170	35	21	17	25	1.95

Tables:   1

The End!