Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01008384.1 Hibiscus syriacus cultivar Beakdansim tig00111146_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 473027
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 3 of 3

Found at i:462809 original size:59 final size:59

Alignment explanation


    Indices: 462698--462811  Score: 167
    Period size: 59  Copynumber: 1.9  Consensus size: 59

     462688 GATTGATTTA

                                       *             *   *             
     462698 AAACCAATAACTCCAACCTATTACTATTTGTTTTATTAATTCAAATCATCCGTTTGACC
          1 AAACCAATAACTCCAACCTATTACTATATGTTTTATTAATTAAAACCATCCGTTTGACC

                                                  *         *       
     462757 AAACCAATAACTCCAACCTATTACT-TATGTTTTATTATTTAAAACCCTTCCGTTT
          1 AAACCAATAACTCCAACCTATTACTATATGTTTTATTAATTAAAA-CCATCCGTTT

     462812 CCTTTTAAAA


Statistics
Matches: 49,  Mismatches: 5, Indels: 2
        0.88            0.09        0.04

Matches are distributed among these distances:
  58   16  0.33
  59   33  0.67

ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39


Consensus pattern (59 bp):   
AAACCAATAACTCCAACCTATTACTATATGTTTTATTAATTAAAACCATCCGTTTGACC

Found at i:471960 original size:27 final size:27

Alignment explanation


    Indices: 471929--471984  Score: 112
    Period size: 27  Copynumber: 2.1  Consensus size: 27

     471919 TTTTGCCAAG

                                       
     471929 AACTCTATCAGGCTGGCATGATTCGAC
          1 AACTCTATCAGGCTGGCATGATTCGAC

                                       
     471956 AACTCTATCAGGCTGGCATGATTCGAC
          1 AACTCTATCAGGCTGGCATGATTCGAC

              
     471983 AA
          1 AA

     471985 GATCTTAAGA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25


Consensus pattern (27 bp):   
AACTCTATCAGGCTGGCATGATTCGAC

Done.