Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008387.1 Hibiscus syriacus cultivar Beakdansim tig00111151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2491990
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 12
Found at i:2110705 original size:18 final size:18
Alignment explanation
Indices: 2110682--2110716 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2110672 TCCCATCTAG
2110682 CTTATC-TTATATGTTCAT
1 CTTATCATT-TATGTTCAT
2110700 CTTATCATTTATGTTCA
1 CTTATCATTTATGTTCA
2110717 AATCTCCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (18 bp):
CTTATCATTTATGTTCAT
Found at i:2111324 original size:21 final size:21
Alignment explanation
Indices: 2111294--2111338 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
2111284 ATTCTGTCGT
* *
2111294 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
2111315 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
2111336 TTG
1 TTG
2111339 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:2112117 original size:14 final size:14
Alignment explanation
Indices: 2112098--2112128 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
2112088 CAAAATTATT
2112098 TAAATAAATTCAAA
1 TAAATAAATTCAAA
*
2112112 TAAATAAATTCTAA
1 TAAATAAATTCAAA
2112126 TAA
1 TAA
2112129 TTTAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAATAAATTCAAA
Found at i:2112395 original size:24 final size:24
Alignment explanation
Indices: 2112341--2112397 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
2112331 AAATTAAAAT
* * *
2112341 AATAATAAAATAATTAATTACTTA
1 AATAATAAAATAATTAATGAATAA
* **
2112365 AACAATAAAATTTTTAATGAATAA
1 AATAATAAAATAATTAATGAATAA
2112389 AATAATAAA
1 AATAATAAA
2112398 TTATAAAAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (24 bp):
AATAATAAAATAATTAATGAATAA
Found at i:2112627 original size:19 final size:19
Alignment explanation
Indices: 2112586--2112632 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
2112576 CAGGGGTATC
* *
2112586 AGCGGTTTTATTGGATATC
1 AGCGGTTTTATCGGATATA
* *
2112605 AGCGGTTTTATCGGGTGTA
1 AGCGGTTTTATCGGATATA
2112624 AGCGGTTTT
1 AGCGGTTTT
2112633 CGGCTAAGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.17, C:0.11, G:0.32, T:0.40
Consensus pattern (19 bp):
AGCGGTTTTATCGGATATA
Found at i:2116193 original size:60 final size:59
Alignment explanation
Indices: 2116034--2116204 Score: 157
Period size: 60 Copynumber: 2.8 Consensus size: 59
2116024 TACCTTCTAT
* * *
2116034 ATCCTTAAATTATGACTCTAATTCTAAATTGGTCACTAAACTTTTGAACATCCCAAATTC
1 ATCCCTAAATTATGACTCTAATTCTAAATTAGTC-CCAAACTTTTGAACATCCCAAATTC
* * * * * * *
2116094 -TTCCTCAAATTATGATTC-ACATTCTTAATTGATTCCCAAATTTTTGAACATTCTAAATTC
1 ATCCCT-AAATTATGACTCTA-ATTCTAAATT-AGTCCCAAACTTTTGAACATCCCAAATTC
* * * *
2116154 ATCCCTAAATTATAACCCTAATTCTAAATTAGTCTCCAAACATTTAAACAT
1 ATCCCTAAATTATGACTCTAATTCTAAATTAGTC-CCAAACTTTTGAACAT
2116205 TCCTATAACA
Statistics
Matches: 86, Mismatches: 19, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
59 7 0.08
60 72 0.84
61 7 0.08
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.38
Consensus pattern (59 bp):
ATCCCTAAATTATGACTCTAATTCTAAATTAGTCCCAAACTTTTGAACATCCCAAATTC
Found at i:2122592 original size:186 final size:187
Alignment explanation
Indices: 2122278--2123010 Score: 1384
Period size: 186 Copynumber: 3.9 Consensus size: 187
2122268 CATGTACATT
2122278 TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCGGCAAAATCAT
1 TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCGGCAAAATCAT
*
2122343 GTCAAAAAAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
66 GTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
2122408 ATAACTATTCACTAGTATAACTTACAATTCATGGATGAAT-CTACATGTACATTTGC
131 ATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACATGTACATTTGC
*
2122464 TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCAGCAAAATCAT
1 TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCGGCAAAATCAT
*
2122529 GTCAAAATAATGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
66 GTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
2122594 ATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACATGTACATTTGC
131 ATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACATGTACATTTGC
*
2122651 TGATCATGAACCATTACCAAATGATTTCTAGGCTTCTAGTACAGACAATAAATC-GCAAAATCAT
1 TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCGGCAAAATCAT
*
2122715 GTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGTCTCCAACCC-TTTAACGGTACAACTCTA
66 GTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
2122779 ATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACATGTACATTTGC
131 ATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACATGTACATTTGC
2122836 TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCGGCAAAATCAT
1 TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCGGCAAAATCAT
*
2122901 GTCAAAATAACAGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
66 GTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
2122966 AT-ACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACA
131 ATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACA
2123011 CATATGAACA
Statistics
Matches: 535, Mismatches: 9, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
185 128 0.24
186 318 0.59
187 89 0.17
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (187 bp):
TGATCATGAACCATTACCAAATGATTTCTAGACTTCTAGTACAGACAATAAATCGGCAAAATCAT
GTCAAAATAACGGTGGTTTCACTTCACTTGTGTCCGGCTCCAACCCTTTTAACGGTACAACTCTA
ATAACTATTCACTAGTATAACTTACAATTCATGGATGAATCCTACATGTACATTTGC
Found at i:2125536 original size:23 final size:23
Alignment explanation
Indices: 2125500--2125557 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
2125490 TTTATTTGTA
*
2125500 ATTTTATTAGTACTTTTAA-TA-T
1 ATTTTATTATTAC-TTTAATTATT
2125522 ATTTTAATTATTACTTTAATTATT
1 ATTTT-ATTATTACTTTAATTATT
2125546 ATTTTATTATTA
1 ATTTTATTATTA
2125558 TTATCTTAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
22 10 0.31
23 16 0.50
24 6 0.19
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (23 bp):
ATTTTATTATTACTTTAATTATT
Found at i:2125541 original size:12 final size:11
Alignment explanation
Indices: 2125524--2125559 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
2125514 TTTAATATAT
2125524 TTTAATTATTA
1 TTTAATTATTA
2125535 CTTTAATTATTA
1 -TTTAATTATTA
*
2125547 TTTTATTATTA
1 TTTAATTATTA
2125558 TT
1 TT
2125560 ATCTTAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTAATTATTA
Found at i:2125556 original size:11 final size:11
Alignment explanation
Indices: 2125479--2125559 Score: 60
Period size: 12 Copynumber: 7.2 Consensus size: 11
2125469 TTTTAATTTC
*
2125479 TTTTATCATTA
1 TTTTATTATTA
2125490 -TTTATT-TGTAA
1 TTTTATTAT-T-A
*
2125501 TTTTATTAGTA
1 TTTTATTATTA
*
2125512 CTTTTAATA-TA
1 -TTTTATTATTA
2125523 TTTTAATTATTA
1 TTTT-ATTATTA
*
2125535 CTTTAATTATTA
1 -TTTTATTATTA
2125547 TTTTATTATTA
1 TTTTATTATTA
2125558 TT
1 TT
2125560 ATCTTAGTCA
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
9 1 0.02
10 10 0.18
11 19 0.34
12 23 0.41
13 3 0.05
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:2125998 original size:144 final size:143
Alignment explanation
Indices: 2125763--2126031 Score: 407
Period size: 144 Copynumber: 1.9 Consensus size: 143
2125753 AATAATCATA
* *
2125763 TTTTAATATTTATATATTTTTTAATATTAAGAAATGGGCTGTCTTAAAGCACCTAGAAGTCCTTT
1 TTTTAATATTTATATATTTTTTAATATTAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTCCTTT
* * *
2125828 TCTGATATTCTTAAATAAATAAATATCCTATTTTTATAAATTATATATACTAATTTATTTTAATT
66 TCTGATATTCTTAAATAAATAAATATCCTATATATATAAA-TATATATACTAATATATTTTAATT
2125893 ATTTTATAGAAATT
130 ATTTTATAGAAATT
* *
2125907 TTTTAATATTTATTTATTTTTTAATATTAAGAAAAGAGTTGTCTTAAAGCACCTAGAAG-CCATT
1 TTTTAATATTTATATATTTTTTAATATTAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTCC-TT
* * *
2125971 TTCTGATATT-TCTAAATAAATAAATATCTTATATATATATATATATATATTAATATATTTT
65 TTCTGATATTCT-TAAATAAATAAATATCCTATATATATAAATATATATACTAATATATTTT
2126032 CTTAAAACTA
Statistics
Matches: 113, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
143 21 0.19
144 92 0.81
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.48
Consensus pattern (143 bp):
TTTTAATATTTATATATTTTTTAATATTAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTCCTTT
TCTGATATTCTTAAATAAATAAATATCCTATATATATAAATATATATACTAATATATTTTAATTA
TTTTATAGAAATT
Found at i:2126572 original size:28 final size:30
Alignment explanation
Indices: 2126513--2126582 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 30
2126503 TAATTCTTGC
*
2126513 TTTTCA-AA-ATTTTTATATATACTTATTA
1 TTTTCATAATATTTATATATATACTTATTA
*
2126541 TTTTCATAATATTTATATGTATA-TTATT-
1 TTTTCATAATATTTATATATATACTTATTA
2126569 TTTT-ATTAATATTT
1 TTTTCA-TAATATTT
2126583 TTAATTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 1 0.03
28 18 0.49
29 7 0.19
30 11 0.30
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (30 bp):
TTTTCATAATATTTATATATATACTTATTA
Found at i:2131223 original size:2 final size:2
Alignment explanation
Indices: 2131211--2131282 Score: 135
Period size: 2 Copynumber: 36.0 Consensus size: 2
2131201 TCCTTTCAAA
*
2131211 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2131253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2131283 CCCTTGTTAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2136687 original size:22 final size:22
Alignment explanation
Indices: 2136659--2136737 Score: 149
Period size: 22 Copynumber: 3.6 Consensus size: 22
2136649 ATATCTACAT
2136659 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
2136681 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
2136703 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
2136725 TTTTCAAAGATGA
1 TCTTCAAAGATGA
2136738 AAGCTTTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:2137538 original size:73 final size:73
Alignment explanation
Indices: 2137419--2138113 Score: 1110
Period size: 73 Copynumber: 9.5 Consensus size: 73
2137409 CTATTTCCCA
2137419 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGA-TCTTAAAG
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTC-TAAAG
2137483 CCTCAGGGT
65 CCTCAGGGT
*
2137492 CATCTGTAAGACCTACAGTGCATGATGTTCTAAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
2137557 CTCAGGGT
66 CTCAGGGT
2137565 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
*
2137630 CTCAGAGT
66 CTCAGGGT
* *
2137638 CATCTGTAAGACCTACAATGCATGATGTTCTCAAAAAGCCTTCGGGAGTTTTTTGATTCTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
2137703 CTCAGGGT
66 CTCAGGGT
* *
2137711 CATCTATAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGAGAGCTTTTTGATTCTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
2137776 CTCAGGGT
66 CTCAGGGT
*
2137784 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAACTTTTTGATTCTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
2137849 CTCAGGGT
66 CTCAGGGT
*
2137857 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTTGGGAGCTTTTTGATTCTAAAGC
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
*
2137922 CTTAGGGT
66 CTCAGGGT
2137930 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATAT-TAAAG
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGAT-TCTAAAG
*
2137994 TCTCAGGGT
65 CCTCAGGGT
** * * * * *
2138003 CATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTTGGGAGCTTTTTGATATTTTTAA
1 CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTG--A-TTCT-A
*
2138068 AAACCTTC-GGGT
62 AAGCC-TCAGGGT
* *
2138080 CATCTGTAAG-CCTTTCAGTGCATGATGTTTTCAA
1 CATCTGTAAGACC-TACAGTGCATGATGTTCTCAA
2138114 CATTTCATCC
Statistics
Matches: 582, Mismatches: 31, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
73 536 0.92
74 3 0.01
75 2 0.00
76 4 0.01
77 35 0.06
78 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (73 bp):
CATCTGTAAGACCTACAGTGCATGATGTTCTCAAAAAGCCTTCGGGAGCTTTTTGATTCTAAAGC
CTCAGGGT
Found at i:2138246 original size:3 final size:3
Alignment explanation
Indices: 2138238--2138280 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
2138228 CAGTTTGCTT
* *
2138238 TTA TTA TTA TTA TTA TTA TTA TTA TACA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
2138281 AATAAATATT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 35 0.95
4 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:2142128 original size:3 final size:3
Alignment explanation
Indices: 2142120--2142160 Score: 64
Period size: 3 Copynumber: 13.0 Consensus size: 3
2142110 AATATTAAAG
2142120 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TATA ATTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA A-TA ATA
2142161 TTTATAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 30 0.83
4 6 0.17
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:2142416 original size:55 final size:53
Alignment explanation
Indices: 2142387--2142622 Score: 293
Period size: 55 Copynumber: 4.5 Consensus size: 53
2142377 ACAGGTTCGT
2142387 TCCCTATTCCTTCAGAGAGTATAGGACT--CAATCTTCAACAAACGTGTCCGC
1 TCCCTATTCCTTCAGAGAGTATAGGACTAACAATCTTCAACAAACGTGTCCGC
2142438 TCCCTATTCCTTCAGAGAGTATAGGACT--CAATCTTCAACAAACGTGTCCGC
1 TCCCTATTCCTTCAGAGAGTATAGGACTAACAATCTTCAACAAACGTGTCCGC
* * * * **
2142489 TCCTTATTCCTTCAGAGAGTATAGCACTTGAACAATCTTCAACAAACATATCTAC
1 TCCCTATTCCTTCAGAGAGTATAGGAC-T-AACAATCTTCAACAAACGTGTCCGC
* * * *
2142544 TCCCTATTCCTTCAGAGAGTATAAGACTCGAACAAGCTTCAACAATCGTGTCTGC
1 TCCCTATTCCTTCAGAGAGTATAGGACT--AACAATCTTCAACAAACGTGTCCGC
*
2142599 TCCTTATTCCTTCAG-GAAGTATAG
1 TCCCTATTCCTTCAGAG-AGTATAG
2142623 AACTCGAATA
Statistics
Matches: 163, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
51 76 0.47
52 1 0.01
54 2 0.01
55 84 0.52
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (53 bp):
TCCCTATTCCTTCAGAGAGTATAGGACTAACAATCTTCAACAAACGTGTCCGC
Found at i:2142525 original size:106 final size:103
Alignment explanation
Indices: 2142391--2142627 Score: 298
Period size: 106 Copynumber: 2.2 Consensus size: 103
2142381 GTTCGTTCCC
* * * *
2142391 TATTCCTTCAGAGAGTATAGGACTCAATCTTCAACAAACGTGTCCGCTCCCTATTCCTTCAGAGA
1 TATTCCTTCAGAGAGTATAGCACTCAATCTTCAACAAACATATCCACTCCCTATTCCTTCAGAGA
* *
2142456 GTATAGGACT-CAATCTTCAACAAACGTGTCCGCTCCT
66 GTATAAGACTACAAGCTTCAACAAACGTGTCCGCTCCT
*
2142493 TATTCCTTCAGAGAGTATAGCACTTGAACAATCTTCAACAAACATATCTACTCCCTATTCCTTCA
1 TATTCCTTCAGAGAGTATAGCAC-T---CAATCTTCAACAAACATATCCACTCCCTATTCCTTCA
* *
2142558 GAGAGTATAAGACTCGAACAAGCTTCAACAATCGTGTCTGCTCCT
62 GAGAGTATAAGACT---ACAAGCTTCAACAAACGTGTCCGCTCCT
*
2142603 TATTCCTTCAG-GAAGTATAGAACTC
1 TATTCCTTCAGAG-AGTATAGCACTC
2142628 GAATATATTC
Statistics
Matches: 116, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
102 22 0.19
103 1 0.01
106 47 0.41
109 2 0.02
110 44 0.38
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (103 bp):
TATTCCTTCAGAGAGTATAGCACTCAATCTTCAACAAACATATCCACTCCCTATTCCTTCAGAGA
GTATAAGACTACAAGCTTCAACAAACGTGTCCGCTCCT
Found at i:2142628 original size:55 final size:55
Alignment explanation
Indices: 2142331--2142800 Score: 307
Period size: 54 Copynumber: 8.8 Consensus size: 55
2142321 ATCGGGTTCT
* * * * * *
2142331 CTCCCTATTGCTTCAGGGAGTATAAAACTCAAACAATCTT-AATAAAACAG-GTTCG
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAA-CAAAC-GTGTCCG
* *
2142386 TTCCCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACAAACGTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCG
*
2142437 CTCCCTATTCCTTCAGAGAGTATAGGACT----CAATCTTCAACAAACGTGTCCG
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCG
* * * * * **
2142488 CTCCTTATTCCTTCAGAGAGTATAGCACTTGAACAATCTTCAACAAACATATCTA
1 CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCG
* * *
2142543 CTCCCTATTCCTTCAGAGAGTATA-AGACTCGAACAAGCTTCAACAATCGTGTCTG
1 CTCCCTATTCCTTCAGAGAGTATAGA-ACTCGAACAATCTTCAACAAACGTGTCCG
* * * ** * * *
2142598 CTCCTTATTCCTTCAG-GAAGTATAGAACTCGAA-TATATTCTGCTAACGAGTTCG
1 CTCCCTATTCCTTCAGAG-AGTATAGAACTCGAACAATCTTCAACAAACGTGTCCG
* * * ** * *
2142652 CTCCCTTTTTCTCTAAG-GAGTATAGAACTC-AGAC-ATCTTCTTCAAACGGGTTCG
1 CTCCCTATTCCT-TCAGAGAGTATAGAACTCGA-ACAATCTTCAACAAACGTGTCCG
* * * * ** *
2142706 CTCCCTCTTTC-TCTAGGGAGTATGGAACTCGAAC-ATCTTCTTCAAACG-GGCTCG
1 CTCCCTATTCCTTC-AGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTC-CG
* * * *
2142760 CTCCCTCTTTC-TCTAGGGAGTATAGAACTCGAA-TATCTTCA
1 CTCCCTATTCCTTC-AGAGAGTATAGAACTCGAACAATCTTCA
2142801 TCTGCTCCAC
Statistics
Matches: 350, Mismatches: 48, Indels: 35
0.81 0.11 0.08
Matches are distributed among these distances:
50 1 0.00
51 92 0.26
52 3 0.01
53 4 0.01
54 128 0.37
55 121 0.35
56 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (55 bp):
CTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGTGTCCG
Found at i:2143962 original size:18 final size:17
Alignment explanation
Indices: 2143941--2144011 Score: 53
Period size: 18 Copynumber: 4.4 Consensus size: 17
2143931 CTTGAACCCC
2143941 CTTTTTCTTTTTCTTTCT
1 CTTTTTCTTTTT-TTTCT
*
2143959 CTTTTT-GTTTTTTT-T
1 CTTTTTCTTTTTTTTCT
* *
2143974 C-TTAT-TTTTTTTCCT
1 CTTTTTCTTTTTTTTCT
*
2143989 TTTTTTCTTATTTTTTCT
1 CTTTTTCTT-TTTTTTCT
2144007 -TTTTT
1 CTTTTT
2144012 TTAAGCAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
14 9 0.21
15 3 0.07
16 6 0.14
17 11 0.26
18 13 0.31
ACGTcount: A:0.03, C:0.14, G:0.01, T:0.82
Consensus pattern (17 bp):
CTTTTTCTTTTTTTTCT
Found at i:2143984 original size:21 final size:20
Alignment explanation
Indices: 2143942--2144013 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 20
2143932 TTGAACCCCC
*
2143942 TTTTTCTTTTTCTT-TCTCTTT
1 TTTTTTTTTTTCTTAT-T-TTT
*
2143963 TTGTTTTTTTTCTTATTTTT
1 TTTTTTTTTTTCTTATTTTT
*
2143983 TTTCCTTTTTTTCTTATTTTT
1 TTT-TTTTTTTTCTTATTTTT
2144004 TCTTTTTTTT
1 T-TTTTTTTT
2144014 AAGCAAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 5 0.12
21 35 0.81
22 3 0.07
ACGTcount: A:0.03, C:0.12, G:0.01, T:0.83
Consensus pattern (20 bp):
TTTTTTTTTTTCTTATTTTT
Found at i:2155449 original size:16 final size:18
Alignment explanation
Indices: 2155417--2155451 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
2155407 AATATAAAAC
2155417 ATAAAATATAGGATAAAT
1 ATAAAATATAGGATAAAT
2155435 ATAAAA-ATA-GATAAAT
1 ATAAAATATAGGATAAAT
2155451 A
1 A
2155452 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 3 0.18
18 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
ATAAAATATAGGATAAAT
Found at i:2156075 original size:37 final size:36
Alignment explanation
Indices: 2156032--2156133 Score: 165
Period size: 34 Copynumber: 2.9 Consensus size: 36
2156022 TTAGTAGAAC
2156032 TCTATCCTATTTTTAGGAGTTTGAATCCTAGCAAAAT
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG-AAAAT
2156069 GT-TATCCTATTTTTAGGAGTTTGAATCCT--AAAAT
1 -TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
2156103 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAG
2156134 TAGGACGAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
33 1 0.02
34 32 0.52
37 27 0.44
38 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (36 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTAGAAAAT
Found at i:2156987 original size:105 final size:105
Alignment explanation
Indices: 2156680--2157548 Score: 1260
Period size: 105 Copynumber: 8.3 Consensus size: 105
2156670 CATTGTTCCA
* * **
2156680 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTG-GAACCGGGAAA-TTGTTTGTTGACA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-A-TTGGAAAGTTG-TTGTTGACA
* * * *
2156743 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
63 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
2156786 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGA-A-T-GAAA-TT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAACC
2156846 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
2156886 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAACC
*
2156951 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
2156991 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGA-A-T-GAAA-TT-TTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAACC
2157051 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
2157091 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAAGC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAACC
*
2157156 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
66 AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
2157196 AGTCTAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAACC
2157261 AGCGGTCCCTTCGTCAGTGAAGTTGAACTTGCGTTGTCTGG
66 AGCGGTCCCTTCGTC-GTGAAGTTGAACTTGCGTTGTCTGG
* * * * *
2157302 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTTTGAAATTGGGAAAATTGTTTATTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATT-GGAAAGTTG-TTGTTGACAA
2157367 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
64 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
2157409 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT-GAGAAGTTGTTTGTTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGA-AAGTTG-TTGTTGACAA
* * * **
2157473 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCA
64 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
2157515 AGTGCCACGATATCCTCCGTCGTGGAGTTGAAAT
1 AGT-CCA--ATATCCTTCGTTGTGAAGTTGAAAT
2157549 CGCGGATGGC
Statistics
Matches: 707, Mismatches: 38, Indels: 33
0.91 0.05 0.04
Matches are distributed among these distances:
100 176 0.25
101 4 0.01
102 12 0.02
103 9 0.01
104 5 0.01
105 221 0.31
106 155 0.22
107 77 0.11
108 26 0.04
109 22 0.03
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (105 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTGTTGACAACC
AGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:2157033 original size:205 final size:207
Alignment explanation
Indices: 2156680--2157548 Score: 1273
Period size: 205 Copynumber: 4.1 Consensus size: 207
2156670 CATTGTTCCA
* * **
2156680 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTG-GAACCGGGAAA-TTGTTTGTTGACA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAG-A-TTGGAAAGTTGTTTGTTGACA
* * ** *
2156743 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGA
64 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGA
*
2156808 AGTTGAAATTGGCTCTGAA-TGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAA
129 AGTTGAAATTGGCTCTGAATTGAAATTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
2156872 CTTGCGTTGTCTGG
194 CTTGCGTTGTCTGG
*
2156886 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTG-TTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTTGTTGACAAC
2156950 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
*
2157015 TTGAAATTGGCTCTGAA-TGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACT
131 TTGAAATTGGCTCTGAATTGAAATTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
2157079 TGCGTTGTCTGG
196 TGCGTTGTCTGG
*
2157091 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTG-TTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTTGTTGACAAC
* *
2157155 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCTAATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
*
2157220 TTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAACCAGCGGTCCCTTCGTCAGTGAAGTT
131 TTGAAATTGGCTCTGA-ATT--GAAATT-TTGTTGACAACCAGCGGTCCCTTCGTC-GTGAAGTT
2157285 GAACTTGCGTTGTCTGG
191 GAACTTGCGTTGTCTGG
* * * * *
2157302 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTTTGAAATTGGGAAAATTGTTTATTGACAA
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATT-GGAAAGTTGTTTGTTGACAA
* *
2157367 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAA
* *
2157432 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGT
130 GTTGAAATTGGCTCTG-AATTGA-AA--T-TTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGT
* **
2157497 TGAACTTGTGTTGTCTCA
190 TGAACTTGCGTTGTCTGG
* * *
2157515 AGTGCCACGATATCCTCCGTCGTGGAGTTGAAAT
1 AGT-CCA--ATATCCTTCGTTGTGAAGTTGAAAT
2157549 CGCGGATGGC
Statistics
Matches: 613, Mismatches: 32, Indels: 26
0.91 0.05 0.04
Matches are distributed among these distances:
205 294 0.48
206 42 0.07
207 2 0.00
209 5 0.01
210 26 0.04
211 68 0.11
212 9 0.01
213 115 0.19
214 30 0.05
215 1 0.00
216 21 0.03
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (207 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGAAAGTTGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGGAGTCCAATATCCTTCGCTGTGAAG
TTGAAATTGGCTCTGAATTGAAATTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACT
TGCGTTGTCTGG
Found at i:2158269 original size:36 final size:35
Alignment explanation
Indices: 2158218--2158498 Score: 245
Period size: 36 Copynumber: 8.0 Consensus size: 35
2158208 TTTGAAGGTT
* *
2158218 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
2158254 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * * * *
2158289 CTTAGTTCCAAAAAAAACTGTCTCAAGGGAGACGGAAT
1 -TT-GTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
* * **
2158327 TTGTTTCAA-AGAAAACATAT-TC---A-A-A-TATT
1 TTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
*
2158356 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * **
2158391 TTTATTTCAAGGGAAACTGTCTCAAGATAGACGAATT
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGAC-AAAA
*
2158428 TTTTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
*
2158463 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 -TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
2158499 CTCTTATAGT
Statistics
Matches: 199, Mismatches: 30, Indels: 32
0.76 0.11 0.12
Matches are distributed among these distances:
28 2 0.01
29 17 0.09
30 1 0.01
31 1 0.01
32 2 0.01
33 1 0.01
34 1 0.01
35 8 0.04
36 133 0.67
37 31 0.16
38 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.26
Consensus pattern (35 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:2158360 original size:102 final size:102
Alignment explanation
Indices: 2158254--2158442 Score: 265
Period size: 102 Copynumber: 1.9 Consensus size: 102
2158244 TAGACGAAAA
*
2158254 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAAAAACTGTCTCAAGGGA
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTA-TTCCAAAAAAAACTGTCTCAAGAGA
2158319 GACGGAA-TTTGTTTCAA-AGAAAACATATTCAAATATT
65 GAC-GAATTTTGTTTCAAGAGAAAACATATTCAAATATT
* * * *** *
2158356 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGATAG
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTATTCCAAAAAAAACTGTCTCAAGAGAG
*
2158421 ACGAATTTTTTTTCAAGAGAAA
66 ACGAATTTTGTTTCAAGAGAAA
2158443 CTGTCTCAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
100 3 0.04
101 31 0.41
102 42 0.55
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (102 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTATTCCAAAAAAAACTGTCTCAAGAGAG
ACGAATTTTGTTTCAAGAGAAAACATATTCAAATATT
Found at i:2158372 original size:138 final size:137
Alignment explanation
Indices: 2158216--2158472 Score: 363
Period size: 138 Copynumber: 1.9 Consensus size: 137
2158206 AATTTGAAGG
* *
2158216 TTTTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAAA-TTGTTTCAAGAGAAACTGTCTCAAGA
1 TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC-AAAATTTATTTCAAGAGAAACTGTCTCAAGA
* **
2158280 GAGACAAAACTTAGTTCCAAAAAAAACTGTCTCAAGGGAGACGGAATTTGTTTCAAAGAAAACAT
65 GAGAC-AAACTTAGTTCCAAAAAAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAGAAAACAT
2158345 ATTCAAATA
129 ATTCAAATA
* *
2158354 TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGAT
1 TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGAGAAACTGTCTCAAGAG
* * ** * * *
2158419 AGACGAATTTTTTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAA
66 AGACAAACTTAGTTCCAAAAAAAACTGTCTCAAGAGAGACAAAATTTGTTTCAA
2158473 GGGAAACTGT
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
137 44 0.42
138 60 0.58
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (137 bp):
TTTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTATTTCAAGAGAAACTGTCTCAAGAG
AGACAAACTTAGTTCCAAAAAAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAAGAAAACATAT
TCAAATA
Found at i:2158548 original size:35 final size:34
Alignment explanation
Indices: 2158230--2158548 Score: 166
Period size: 36 Copynumber: 9.1 Consensus size: 34
2158220 GTTTCAAGGG
* * *
2158230 AAACTGTCTCAAGATAGACGAAAATTGTTTCAAGA
1 AAACTGTCTCAAGAGAGAC-AAATTTGTTTTAAGA
* ** *
2158265 GAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAA
1 -AAACTGTCTCAAGAGAGAC-AAA-TTTGTT-TTAAGA
* * *
2158303 AAACTGTCTCAAGGGAGACGGAATTTGTTTCAAAGA
1 AAACTGTCTCAAGAGAGAC-AAATTTGTTT-TAAGA
* * * * *
2158339 AAACATAT-TC---A-A-A-TATTTTGTTTCAAGGG
1 AAAC-TGTCTCAAGAGAGACAAATTTGTTTTAA-GA
* * *
2158368 AAACTGTCTCAAGAGAGACAAAATTTATTTCAAGGG
1 AAACTGTCTCAAGAGAGAC-AAATTTGTTTTAA-GA
* * *
2158404 AAACTGTCTCAAGATAGACGAATTTTTTTTCAAGA
1 AAACTGTCTCAAGAGAGACAAATTTGTTTT-AAGA
* *
2158439 GAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGG
1 -AAACTGTCTCAAGAGAGAC-AAATTTGTTTTAA-GA
** * * *
2158476 AAACTGTCTCAAGAGAGACAAAACTCTTATAGTGA
1 AAACTGTCTCAAGAGAGACAAATTTGTTTTA-AGA
* *
2158511 AAACGGTCTCAAGCGAGACAAATCTTGTTTTAAGA
1 AAACTGTCTCAAGAGAGACAAAT-TTGTTTTAAGA
2158546 AAA
1 AAA
2158549 ACAATCATGA
Statistics
Matches: 217, Mismatches: 47, Indels: 39
0.72 0.16 0.13
Matches are distributed among these distances:
28 4 0.02
29 15 0.07
31 1 0.00
32 2 0.01
33 1 0.00
34 1 0.00
35 42 0.19
36 113 0.52
37 35 0.16
38 3 0.01
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (34 bp):
AAACTGTCTCAAGAGAGACAAATTTGTTTTAAGA
Found at i:2159423 original size:22 final size:22
Alignment explanation
Indices: 2159398--2159448 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
2159388 TTGTGTTTGG
2159398 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
2159420 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
2159442 TCAAAGG
1 TCAAAGG
2159449 ATTGATGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:2160070 original size:18 final size:19
Alignment explanation
Indices: 2160047--2160092 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
2160037 TTGCATGTGC
2160047 TTTTTGTTC-CCTTTTTTA
1 TTTTTGTTCTCCTTTTTTA
*
2160065 TTTTTGTTCTTTCTTTTTTA
1 TTTTTGTTC-TCCTTTTTTA
*
2160085 TTCTTGTT
1 TTTTTGTT
2160093 TTTTTTTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.38
20 15 0.62
ACGTcount: A:0.04, C:0.13, G:0.07, T:0.76
Consensus pattern (19 bp):
TTTTTGTTCTCCTTTTTTA
Found at i:2160106 original size:12 final size:11
Alignment explanation
Indices: 2160058--2160129 Score: 54
Period size: 13 Copynumber: 6.1 Consensus size: 11
2160048 TTTTGTTCCC
*
2160058 TTTTTTATTTT
1 TTTTTTCTTTT
2160069 TGTTCTTTCTTTT
1 T-TT-TTTCTTTT
*
2160082 TTATTCTTGTTTT
1 TT-TT-TTCTTTT
*
2160095 TTTTTCCTTTT
1 TTTTTTCTTTT
**
2160106 TTGCTTCTTTT
1 TTTTTTCTTTT
2160117 CTTTTTTCTTTT
1 -TTTTTTCTTTT
2160129 T
1 T
2160130 GCCCTTTTTG
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
11 15 0.32
12 15 0.32
13 17 0.36
ACGTcount: A:0.03, C:0.12, G:0.04, T:0.81
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:2160119 original size:30 final size:30
Alignment explanation
Indices: 2160085--2160143 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
2160075 TTCTTTTTTA
*
2160085 TTCTTGTTTT-TTTTT-CCTTTTTTGCTTCTT
1 TTCTT-TTTTCTTTTTGCCCTTTTTG-TTCTT
2160115 TTCTTTTTTCTTTTTGCCCTTTTTGTTCT
1 TTCTTTTTTCTTTTTGCCCTTTTTGTTCT
2160144 GATTGAATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 4 0.15
30 14 0.54
31 8 0.31
ACGTcount: A:0.00, C:0.19, G:0.07, T:0.75
Consensus pattern (30 bp):
TTCTTTTTTCTTTTTGCCCTTTTTGTTCTT
Found at i:2160121 original size:24 final size:23
Alignment explanation
Indices: 2160057--2160129 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 23
2160047 TTTTTGTTCC
*
2160057 CTTTTTTATTTTTGTTC---TTT
1 CTTTTTTATTCTTGTTCTTTTTT
*
2160077 CTTTTTTATTCTTGTTTTTTTTT
1 CTTTTTTATTCTTGTTCTTTTTT
*
2160100 CCTTTTTTGCTTCTT-TTCTTTTTT
1 -CTTTTTT-ATTCTTGTTCTTTTTT
2160124 CTTTTT
1 CTTTTT
2160130 GCCCTTTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
20 15 0.34
23 9 0.20
24 15 0.34
25 5 0.11
ACGTcount: A:0.03, C:0.14, G:0.04, T:0.79
Consensus pattern (23 bp):
CTTTTTTATTCTTGTTCTTTTTT
Found at i:2160122 original size:6 final size:7
Alignment explanation
Indices: 2160066--2160129 Score: 51
Period size: 7 Copynumber: 8.7 Consensus size: 7
2160056 CCTTTTTTAT
2160066 TTTTGTTC
1 TTTT-TTC
2160074 TTTCTTT-
1 TTT-TTTC
*
2160081 TTTATTC
1 TTTTTTC
2160088 TTGTTTT-
1 TT-TTTTC
*
2160095 TTTTTCC
1 TTTTTTC
2160102 TTTTTTGC
1 TTTTTT-C
2160110 TTCTTTTC
1 TT-TTTTC
2160118 TTTTTTC
1 TTTTTTC
2160125 TTTTT
1 TTTTT
2160130 GCCCTTTTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
6 5 0.11
7 22 0.48
8 14 0.30
9 5 0.11
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.80
Consensus pattern (7 bp):
TTTTTTC
Found at i:2160130 original size:22 final size:23
Alignment explanation
Indices: 2160074--2160131 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 23
2160064 ATTTTTGTTC
** *
2160074 TTTCTTTTTTATTCTTGTTTTTT
1 TTTCTTTTTGCTTCTTGTTCTTT
2160097 TTTCCTTTTTTGCTTCTT-TTCTTT
1 TTT-C-TTTTTGCTTCTTGTTCTTT
2160121 TTTCTTTTTGC
1 TTTCTTTTTGC
2160132 CCTTTTTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 7 0.23
23 4 0.13
24 9 0.30
25 10 0.33
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.78
Consensus pattern (23 bp):
TTTCTTTTTGCTTCTTGTTCTTT
Found at i:2163356 original size:16 final size:18
Alignment explanation
Indices: 2163324--2163358 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
2163314 ATATAAAAAC
2163324 ATAAAATATAGGATAAAT
1 ATAAAATATAGGATAAAT
2163342 ATAAAA-ATA-GATAAAT
1 ATAAAATATAGGATAAAT
2163358 A
1 A
2163359 AATGAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 3 0.18
18 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
ATAAAATATAGGATAAAT
Found at i:2163949 original size:37 final size:36
Alignment explanation
Indices: 2163899--2164036 Score: 172
Period size: 37 Copynumber: 3.8 Consensus size: 36
2163889 GTGCTTGTGG
* * * * *
2163899 ATCCTATCTTTAGGAATTTAAATCTTAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTA-AAATCT
* *
2163936 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATGTT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAAT-CT
*
2163973 ATCCTATTTTTAGGAGTTTGAATCCTA--AAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAATCT
2164007 ATCCTATTTTTAGGAGTTTGAATCCTAGTA
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTA
2164037 GGACGAAAAT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
34 28 0.31
35 4 0.04
36 4 0.04
37 53 0.60
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (36 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAAAATCT
Found at i:2164010 original size:34 final size:35
Alignment explanation
Indices: 2163933--2164033 Score: 161
Period size: 34 Copynumber: 2.9 Consensus size: 35
2163923 TTAGTAGAAC
2163933 TCTATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATG
1 TCTATCCTATTTTTAGGAGTTTGAATCCT---AAAATG
2163971 T-TATCCTATTTTTAGGAGTTTGAATCCTAAAAT-
1 TCTATCCTATTTTTAGGAGTTTGAATCCTAAAATG
2164004 TCTATCCTATTTTTAGGAGTTTGAATCCTA
1 TCTATCCTATTTTTAGGAGTTTGAATCCTA
2164034 GTAGGACGAA
Statistics
Matches: 62, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
33 1 0.02
34 33 0.53
37 27 0.44
38 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (35 bp):
TCTATCCTATTTTTAGGAGTTTGAATCCTAAAATG
Found at i:2165442 original size:3 final size:3
Alignment explanation
Indices: 2165434--2165468 Score: 52
Period size: 3 Copynumber: 11.0 Consensus size: 3
2165424 AATATTAAAG
2165434 ATA ATA ATA ATA ATA ATA ATA ATA TATA ATTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA A-TA ATA
2165469 TTTATAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 24 0.80
4 6 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:2171267 original size:16 final size:17
Alignment explanation
Indices: 2171246--2171283 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
2171236 TTTCGTTGTC
2171246 ATAGCTTC-TATTACGG
1 ATAGCTTCATATTACGG
*
2171262 ATAGC-TCATATTACGT
1 ATAGCTTCATATTACGG
2171278 ATAGCT
1 ATAGCT
2171284 CCCACTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 2 0.11
16 17 0.89
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (17 bp):
ATAGCTTCATATTACGG
Found at i:2175165 original size:38 final size:39
Alignment explanation
Indices: 2175113--2175192 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 39
2175103 AACTCACTCA
** **
2175113 AAAATAATGAATCGATTTCATTGATTCTTTTATATACTT
1 AAAATAATGAATCGATTTCATAAAAACTTTTATATACTT
2175152 AAAA-AATGAATCGATTTCATAAAAACTTTTATATACTT
1 AAAATAATGAATCGATTTCATAAAAACTTTTATATACTT
2175190 AAA
1 AAA
2175193 GTTTATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.89
39 4 0.11
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (39 bp):
AAAATAATGAATCGATTTCATAAAAACTTTTATATACTT
Found at i:2175313 original size:17 final size:17
Alignment explanation
Indices: 2175293--2175326 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
2175283 TAAACCATAT
*
2175293 TATACATTAGATTAGGA
1 TATACATTAGAATAGGA
2175310 TATACATTAGAATAGGA
1 TATACATTAGAATAGGA
2175327 AAATTCAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (17 bp):
TATACATTAGAATAGGA
Found at i:2180902 original size:42 final size:43
Alignment explanation
Indices: 2180856--2180939 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
2180846 TAATAAAATA
2180856 ATATATCATCGATGA-ATTTTTATATAAATAATGTTTATTTAT
1 ATATATCATCGATGATATTTTTATATAAATAATGTTTATTTAT
* * *
2180898 ATATATTATCGATGATTTTTTTATATAAATAATTTTTATTTA
1 ATATATCATCGATGATATTTTTATATAAATAATGTTTATTTA
2180940 AATAATTAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
42 14 0.37
43 24 0.63
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (43 bp):
ATATATCATCGATGATATTTTTATATAAATAATGTTTATTTAT
Found at i:2180933 original size:15 final size:15
Alignment explanation
Indices: 2180915--2180946 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2180905 ATCGATGATT
2180915 TTTTTATATAAATAA
1 TTTTTATATAAATAA
*
2180930 TTTTTATTTAAATAA
1 TTTTTATATAAATAA
2180945 TT
1 TT
2180947 AGAATTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTATATAAATAA
Found at i:2183528 original size:51 final size:51
Alignment explanation
Indices: 2183447--2183545 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
2183437 TAGTTCTAAC
* * *
2183447 GTTCCCCATCATCAGTACCCACAGCTGATAGTGATTACAAGGACCAAAGTA
1 GTTCCCCATCATCAGTACCAACAGCTGATAGTCATTACAACGACCAAAGTA
* *
2183498 GTTCTCCATCATCGGTACCAACAGCTGATAGTCATTACAACGACCAAA
1 GTTCCCCATCATCAGTACCAACAGCTGATAGTCATTACAACGACCAAA
2183546 ATAACATTGC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (51 bp):
GTTCCCCATCATCAGTACCAACAGCTGATAGTCATTACAACGACCAAAGTA
Found at i:2186944 original size:40 final size:39
Alignment explanation
Indices: 2186885--2187021 Score: 152
Period size: 40 Copynumber: 3.4 Consensus size: 39
2186875 ATTTCAGGCA
*
2186885 AAGAGTATTGATACTTTCCAAGAGTATGAATACTTTCCT
1 AAGAGTATCGATACTTTCCAAGAGTATGAATACTTTCCT
* * *
2186924 GAAGAGTATCGATACATTCCAAGAGTATGTATACTTTCTCC
1 -AAGAGTATCGATACTTTCCAAGAGTATGAATACTTTC-CT
* * *
2186965 AATAGTATCGATACTTTACCCAATAGTAT-AGATATTTTCC-
1 AAGAGTATCGATACTTT--CCAAGAGTATGA-ATACTTTCCT
2187005 AAGAGTATCGATACTTT
1 AAGAGTATCGATACTTT
2187022 TAACAACAGA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
40 65 0.78
41 2 0.02
42 16 0.19
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (39 bp):
AAGAGTATCGATACTTTCCAAGAGTATGAATACTTTCCT
Found at i:2186971 original size:21 final size:21
Alignment explanation
Indices: 2186885--2187021 Score: 114
Period size: 21 Copynumber: 6.8 Consensus size: 21
2186875 ATTTCAGGCA
*
2186885 AAGAGTATTGATAC-TT-TCC
1 AAGAGTATCGATACTTTCTCC
*
2186904 AAGAGTAT-GAATACTTTC-CTG
1 AAGAGTATCG-ATACTTTCTC-C
*
2186925 AAGAGTATCGATAC-AT-TCC
1 AAGAGTATCGATACTTTCTCC
2186944 AAGAGTAT-GTATACTTTCTCC
1 AAGAGTATCG-ATACTTTCTCC
*
2186965 AATAGTATCGATACTTTAC-CC
1 AAGAGTATCGATACTTT-CTCC
* *
2186986 AATAGTATAGATA-TTT-TCC
1 AAGAGTATCGATACTTTCTCC
2187005 AAGAGTATCGATACTTT
1 AAGAGTATCGATACTTT
2187022 TAACAACAGA
Statistics
Matches: 97, Mismatches: 8, Indels: 25
0.75 0.06 0.19
Matches are distributed among these distances:
18 2 0.02
19 37 0.38
20 12 0.12
21 43 0.44
22 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (21 bp):
AAGAGTATCGATACTTTCTCC
Found at i:2186980 original size:61 final size:60
Alignment explanation
Indices: 2186885--2187022 Score: 142
Period size: 61 Copynumber: 2.3 Consensus size: 60
2186875 ATTTCAGGCA
* *
2186885 AAGAGTAT-TGATAC-TTTCCAAGAGTATGAATACTTT-CCTGAAGAGTATCGATACATTCC
1 AAGAGTATGT-ATACTTTTCCAAGAGTATGAATACTTTACC-CAAGAGTATAGATACATTCC
* * **
2186944 AAGAGTATGTATACTTTCTCCAATAGTATCG-ATACTTTACCCAATAGTATAGATATTTTCC
1 AAGAGTATGTATACTTT-TCCAAGAGTAT-GAATACTTTACCCAAGAGTATAGATACATTCC
2187005 AAGAGTATCG-ATACTTTT
1 AAGAGTAT-GTATACTTTT
2187023 AACAACAGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
59 12 0.18
60 4 0.06
61 47 0.70
62 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (60 bp):
AAGAGTATGTATACTTTTCCAAGAGTATGAATACTTTACCCAAGAGTATAGATACATTCC
Found at i:2191664 original size:2 final size:2
Alignment explanation
Indices: 2191659--2191690 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2191649 AAAAAATAGA
2191659 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2191691 TTTATTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2198372 original size:18 final size:18
Alignment explanation
Indices: 2198327--2198378 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
2198317 TTACTATTAC
* *
2198327 TATTTATTATTTTATTAT
1 TATTTATTTTTTTATAAT
*
2198345 T-TTTCCTTTTTTTATAAT
1 TATTT-ATTTTTTTATAAT
*
2198363 TATTTATTTTATTATA
1 TATTTATTTTTTTATA
2198379 TCTTTTCAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 21 0.78
19 3 0.11
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTATTTTTTTATAAT
Found at i:2201307 original size:5 final size:5
Alignment explanation
Indices: 2201289--2201358 Score: 72
Period size: 5 Copynumber: 13.8 Consensus size: 5
2201279 ACCCATTTCG
* * *
2201289 TTTTA TTTTCA TTTTA -TTTA TTTCA TTTCA TTTCA -TTTA TTTTA TTTTA
1 TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
2201338 TTTTTAA TTTTA TTTTA TTTT
1 -TTTT-A TTTTA TTTTA TTTT
2201359 TATCTGAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
4 7 0.12
5 37 0.64
6 13 0.22
7 1 0.02
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:2201314 original size:14 final size:14
Alignment explanation
Indices: 2201290--2201340 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
2201280 CCCATTTCGT
2201290 TTTATTTTCATTTTA
1 TTTA-TTTCATTTTA
*
2201305 TTTATTTCATTTCA
1 TTTATTTCATTTTA
2201319 TTTCATTT-ATTTTA
1 TTT-ATTTCATTTTA
2201333 TTTTATTT
1 -TTTATTT
2201341 TTAATTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 21 0.66
15 11 0.34
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTATTTCATTTTA
Found at i:2201319 original size:19 final size:19
Alignment explanation
Indices: 2201295--2201341 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
2201285 TTCGTTTTAT
2201295 TTTCATTTTATTTATTTCA
1 TTTCATTTTATTTATTTCA
* *
2201314 TTTCATTTCATTTATTTTA
1 TTTCATTTTATTTATTTCA
*
2201333 TTTTATTTT
1 TTTCATTTT
2201342 TAATTTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTCATTTTATTTATTTCA
Found at i:2201349 original size:12 final size:11
Alignment explanation
Indices: 2201324--2201361 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
2201314 TTTCATTTCA
2201324 TTTATTTTA-T
1 TTTATTTTATT
*
2201334 TTTATTTTTAAT
1 TTTA-TTTTATT
2201346 TTTATTTTATT
1 TTTATTTTATT
2201357 TTTAT
1 TTTAT
2201362 CTGAATAGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 4 0.16
11 16 0.64
12 5 0.20
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:2201349 original size:17 final size:17
Alignment explanation
Indices: 2201327--2201360 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2201317 CATTTCATTT
2201327 ATTTTATTTTATTTTTA
1 ATTTTATTTTATTTTTA
2201344 ATTTTATTTTATTTTTA
1 ATTTTATTTTATTTTTA
2201361 TCTGAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTTATTTTATTTTTA
Found at i:2203128 original size:19 final size:19
Alignment explanation
Indices: 2203100--2203162 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
2203090 GGTATTTTAA
*
2203100 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
* *
2203119 TTTAATTAGGATTTAGAAT
1 TTTAATTAGGTTTTAGTAT
* **
2203138 ATTATATTATTTTTTAGGTAT
1 TTTA-ATTAGGTTTTA-GTAT
2203159 TTTA
1 TTTA
2203163 GTTTAAATAG
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 19 0.58
20 8 0.24
21 6 0.18
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.56
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:2205370 original size:10 final size:10
Alignment explanation
Indices: 2205348--2205383 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
2205338 GGACCGGTTG
2205348 AAAACCGGAA
1 AAAACCGGAA
* *
2205358 AAAAACGGGA
1 AAAACCGGAA
2205368 AAAACCGGAA
1 AAAACCGGAA
2205378 AAAACC
1 AAAACC
2205384 TGGATTTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.61, C:0.19, G:0.19, T:0.00
Consensus pattern (10 bp):
AAAACCGGAA
Found at i:2205673 original size:14 final size:14
Alignment explanation
Indices: 2205654--2205681 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2205644 AAGTGAAAGA
2205654 ATAGTTATATAATT
1 ATAGTTATATAATT
2205668 ATAGTTATATAATT
1 ATAGTTATATAATT
2205682 TTGTTATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
ATAGTTATATAATT
Found at i:2208852 original size:5 final size:5
Alignment explanation
Indices: 2208835--2208909 Score: 59
Period size: 5 Copynumber: 15.4 Consensus size: 5
2208825 AACTTACACC
* * *
2208835 TAAAA T-AAA -AAAA TAAAA TTAAAT TAAAA TAAGA TAATA -AAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA -TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
* *
2208883 TAAAA TAAGA -AAAA TAATAA TATAA TA
1 TAAAA TAAAA TAAAA TAA-AA TAAAA TA
2208910 TATATTAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
4 12 0.21
5 36 0.64
6 8 0.14
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (5 bp):
TAAAA
Found at i:2208873 original size:24 final size:24
Alignment explanation
Indices: 2208835--2208909 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
2208825 AACTTACACC
* * *
2208835 TAAAATAAAAAAATAAAATTAAAT
1 TAAAATAAGAAAATAAAAATAAAA
*
2208859 TAAAATAAGATAATAAAAATAAAA
1 TAAAATAAGAAAATAAAAATAAAA
* *
2208883 TAAAATAAGAAAAATAATAATATAA
1 TAAAATAAG-AAAATAAAAATAAAA
2208908 TA
1 TA
2208910 TATATTAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 29 0.67
25 14 0.33
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (24 bp):
TAAAATAAGAAAATAAAAATAAAA
Found at i:2208881 original size:19 final size:19
Alignment explanation
Indices: 2208836--2208909 Score: 69
Period size: 19 Copynumber: 3.8 Consensus size: 19
2208826 ACTTACACCT
* *
2208836 AAAATAAAA-AAATAAAATT
1 AAAATAAAATAAA-ATAATA
* *
2208855 AAATTAAAATAAGATAATA
1 AAAATAAAATAAAATAATA
*
2208874 AAAATAAAATAAAATAAGA
1 AAAATAAAATAAAATAATA
*
2208893 AAAATAATAATATAATA
1 AAAATAA-AATAAAATA
2208910 TATATTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
19 35 0.78
20 10 0.22
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAATAAAATAAAATAATA
Found at i:2208990 original size:2 final size:2
Alignment explanation
Indices: 2208983--2209020 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
2208973 TATGTTTTAA
2208983 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2209021 TTTTAAAAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2209060 original size:24 final size:23
Alignment explanation
Indices: 2209012--2209092 Score: 83
Period size: 22 Copynumber: 3.4 Consensus size: 23
2209002 TATATATATA
*
2209012 ATTATATATTTTTAAAAACTA-T
1 ATTATATATTTTTTAAAACTATT
*
2209034 ATTATAAATTTTTTAAAACTATTT
1 ATTATATATTTTTTAAAACTA-TT
* *
2209058 ATTACATATTTTTTCAACACTATAT
1 ATTATATATTTTTT-AAAACTAT-T
2209083 ATATATATAT
1 AT-TATATAT
2209093 ACACTGTATA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
22 19 0.40
24 14 0.29
25 9 0.19
26 6 0.12
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTATATATTTTTTAAAACTATT
Found at i:2211352 original size:10 final size:9
Alignment explanation
Indices: 2211339--2211412 Score: 61
Period size: 9 Copynumber: 8.6 Consensus size: 9
2211329 GAAAAAAGTC
2211339 AAAAAGGTTG
1 AAAAA-GTTG
2211349 AAAAAG-T-
1 AAAAAGTTG
*
2211356 AAATAGTTG
1 AAAAAGTTG
2211365 AAAAA--TG
1 AAAAAGTTG
2211372 AAAAAGTTG
1 AAAAAGTTG
2211381 AAAAAAGTTG
1 -AAAAAGTTG
*
2211391 -AAAA-TGG
1 AAAAAGTTG
2211398 AAAAAAGTTG
1 -AAAAAGTTG
2211408 AAAAA
1 AAAAA
2211413 CATTTAGAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 17
0.71 0.05 0.23
Matches are distributed among these distances:
7 14 0.27
8 6 0.12
9 16 0.31
10 16 0.31
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.19
Consensus pattern (9 bp):
AAAAAGTTG
Found at i:2211364 original size:16 final size:17
Alignment explanation
Indices: 2211331--2211385 Score: 69
Period size: 16 Copynumber: 3.3 Consensus size: 17
2211321 AAAAAAAGGA
2211331 AAAAAGTCAAAAAGGTTG
1 AAAAAGTCAAAAA-GTTG
*
2211349 AAAAAGT-AAATAGTTG
1 AAAAAGTCAAAAAGTTG
*
2211365 AAAAA-TGAAAAAGTTG
1 AAAAAGTCAAAAAGTTG
2211381 AAAAA
1 AAAAA
2211386 AGTTGAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 1 0.03
16 22 0.65
17 4 0.12
18 7 0.21
ACGTcount: A:0.62, C:0.02, G:0.18, T:0.18
Consensus pattern (17 bp):
AAAAAGTCAAAAAGTTG
Found at i:2211389 original size:26 final size:27
Alignment explanation
Indices: 2211360--2211412 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
2211350 AAAAGTAAAT
2211360 AGTTGAAAAAT-G-AAAAAGTTGAAAAA
1 AGTTG-AAAATGGAAAAAAGTTGAAAAA
2211386 AGTTGAAAATGGAAAAAAGTTGAAAAA
1 AGTTGAAAATGGAAAAAAGTTGAAAAA
2211413 CATTTAGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 5 0.20
26 6 0.24
27 14 0.56
ACGTcount: A:0.60, C:0.00, G:0.21, T:0.19
Consensus pattern (27 bp):
AGTTGAAAATGGAAAAAAGTTGAAAAA
Found at i:2211511 original size:5 final size:6
Alignment explanation
Indices: 2211496--2211537 Score: 66
Period size: 6 Copynumber: 6.8 Consensus size: 6
2211486 TAATAATAAT
*
2211496 AAAAAC AAAAAC AAAAAC AAAAAAC AAAAAT AAAAAC AAAAA
1 AAAAAC AAAAAC AAAAAC -AAAAAC AAAAAC AAAAAC AAAAA
2211538 AATATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (6 bp):
AAAAAC
Found at i:2211520 original size:19 final size:19
Alignment explanation
Indices: 2211496--2211538 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
2211486 TAATAATAAT
2211496 AAAAACAAAAACAAAAACA
1 AAAAACAAAAACAAAAACA
*
2211515 AAAAACAAAAATAAAAACA
1 AAAAACAAAAACAAAAACA
2211534 AAAAA
1 AAAAA
2211539 ATATATATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (19 bp):
AAAAACAAAAACAAAAACA
Found at i:2211575 original size:19 final size:18
Alignment explanation
Indices: 2211551--2211631 Score: 51
Period size: 19 Copynumber: 4.4 Consensus size: 18
2211541 ATATATATAT
*
2211551 ATAAAATAATGTAAAAAA
1 ATAAAAAAATGTAAAAAA
* *
2211569 ATAAAAAAATAT-TAAAA
1 ATAAAAAAATGTAAAAAA
*
2211586 TTAGAAGAAAATG-AAAAAA
1 ATA-AA-AAAATGTAAAAAA
* *
2211605 ATATATATAAA-GTAAACAA
1 ATA-A-AAAAATGTAAAAAA
2211624 ATAAAAAA
1 ATAAAAAA
2211632 TATAAAAGAT
Statistics
Matches: 47, Mismatches: 11, Indels: 11
0.68 0.16 0.16
Matches are distributed among these distances:
17 9 0.19
18 14 0.30
19 23 0.49
20 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21
Consensus pattern (18 bp):
ATAAAAAAATGTAAAAAA
Found at i:2211580 original size:28 final size:27
Alignment explanation
Indices: 2211549--2211638 Score: 87
Period size: 28 Copynumber: 3.3 Consensus size: 27
2211539 ATATATATAT
2211549 ATATAAAATAATGTAAAAAAATAAAAAA
1 ATATAAAATAA-GTAAAAAAATAAAAAA
* *
2211577 ATATTAAAATTAG-AAGAAAATGAAAAAA
1 ATA-TAAAATAAGTAAAAAAAT-AAAAAA
* *
2211605 ATAT-ATATAAAGTAAACAAAT-AAAAA
1 ATATAAAAT-AAGTAAAAAAATAAAAAA
2211631 ATATAAAA
1 ATATAAAA
2211639 GATCAAATAA
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
26 12 0.24
27 12 0.24
28 19 0.38
29 7 0.14
ACGTcount: A:0.71, C:0.01, G:0.06, T:0.22
Consensus pattern (27 bp):
ATATAAAATAAGTAAAAAAATAAAAAA
Found at i:2212828 original size:2 final size:2
Alignment explanation
Indices: 2212823--2212868 Score: 62
Period size: 2 Copynumber: 24.5 Consensus size: 2
2212813 TGTGTAAATA
*
2212823 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A- AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2212863 -T AT AT A
1 AT AT AT A
2212869 CTCATATAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
1 3 0.08
2 36 0.92
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2213478 original size:86 final size:86
Alignment explanation
Indices: 2213282--2213952 Score: 762
Period size: 86 Copynumber: 8.0 Consensus size: 86
2213272 CAGATAGCTT
* * * * * *
2213282 TTCTCGACTTAAGCTATGCTGTAAATTTGATGTTCCTTTGAGATGAGTGTAATCGAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
2213347 TC--TTGGTTGACAGATAACCC
66 TCTTTTGG-TGACAGATAACCC
* * *
2213367 TTCTCTCCTTGAGTTATGCTGTAAATTGGATATGCCTTTGAGTTGAGTGTAATCGAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
*
2213432 TCTTTTGGTGACATATAACCC
66 TCTTTTGGTGACAGATAACCC
* * * * *
2213453 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATTCCTTTGAGATGAATGGAATCAAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
* * *
2213518 TATGTTGTTGACAGATAACCC
66 TCTTTTGGTGACAGATAACCC
* * * * * *
2213539 TTCTCTCCTTGAGCTACGTTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTTGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
2213604 TC--TTGGTTGACAGATAACCC
66 TCTTTTGG-TGACAGATAACCC
*
2213624 TTCTCGCCTTAAGTTATGC--------TG--ATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
* *
2213679 CCTTTTGGTGACAGACAACCC
66 TCTTTTGGTGACAGATAACCC
* * * * * *
2213700 TTCTCTCATTGAGTTATGCTGTAAATTTGATATACCTTTGAGCTGAATGTAATCGATCTCGAAGA
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
* * *
2213765 TCTTTTGTTGATAGATAGCCC
66 TCTTTTGGTGACAGATAACCC
* * * **
2213786 TTCTCGCCTTGAGTTATGCTGTAAATTGGATATGCCTTGGAGCTGAATGTAATTAAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
* *
2213851 TCTTTTGTTGACAGATAGCCC
66 TCTTTTGGTGACAGATAACCC
* ** * * *
2213872 TTCTCGCCTTGAGATATGAAGTAAATTTGATGTGCCTTTTAGCTGAGTGTAATCAAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
2213937 TC--TTGGTTGACAGATA
66 TCTTTTGG-TGACAGATA
2213953 GCTCTTCTTT
Statistics
Matches: 496, Mismatches: 74, Indels: 32
0.82 0.12 0.05
Matches are distributed among these distances:
75 33 0.07
76 28 0.06
77 6 0.01
84 8 0.02
85 95 0.19
86 322 0.65
87 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (86 bp):
TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
TCTTTTGGTGACAGATAACCC
Found at i:2213740 original size:247 final size:250
Alignment explanation
Indices: 2213282--2213881 Score: 783
Period size: 247 Copynumber: 2.4 Consensus size: 250
2213272 CAGATAGCTT
* * * * *
2213282 TTCTCGACTTAAGCTATGCTGTAAATTTGATGTTCCTTTGAGATGAGTGTAATCGAACTCGAAGG
1 TTCTCGCCTTGAGCTACGCTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
* * *
2213347 TCTTGGTTGACAGATAACCCTTCTCTCCTTGAGTTATGCTGTAAATTGGATATGCCTTTGAGTTG
66 TCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGC-----A-TGGA-ATGCCTTTGAGCTG
* * * *
2213412 AGTGTAATCGAACTCGAAGGTCTTTTGGTGACATATAACCCTTCTCGCCTTGAGTTATGCTGTAA
124 AGTGTAATCGAACTCGAAGGCCTTTTGGTGACAGACAACCCTTCTCGCATTGAGTTATGCTGTAA
* *
2213477 ATTTGATATTCCTTTGAGATGAATGGAATCAAACTCGAAGGTATGTTGTTGACAGATAACCC
189 ATTTGATATACCTTTGAGATGAATGGAATCAAACTCGAAGATATGTTGTTGACAGATAACCC
* * *
2213539 TTCTCTCCTTGAGCTACGTTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTTGAAGG
1 TTCTCGCCTTGAGCTACGCTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
2213604 TCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGC-T-G-ATGCCTTTGAGCTGAGTGTAA
66 TCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGCATGGAATGCCTTTGAGCTGAGTGTAA
*
2213666 TCGAACTCGAAGGCCTTTTGGTGACAGACAACCCTTCTCTCATTGAGTTATGCTGTAAATTTGAT
131 TCGAACTCGAAGGCCTTTTGGTGACAGACAACCCTTCTCGCATTGAGTTATGCTGTAAATTTGAT
* * * * * * * *
2213731 ATACCTTTGAGCTGAATGTAATCGATCTCGAAGATCTTTTGTTGATAGATAGCCC
196 ATACCTTTGAGATGAATGGAATCAAACTCGAAGATATGTTGTTGACAGATAACCC
* * * * * * **
2213786 TTCTCGCCTTGAGTTATGCTGTAAATTGGATATGCCTTGGAGCTGAATGTAATTAAACTCGAAGG
1 TTCTCGCCTTGAGCTACGCTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
* *
2213851 TCTTTTGTTGACAGATAGCCCTTCTCGCCTT
66 TC-TTGGTTGACAGATAACCCTTCTCGCCTT
2213882 GAGATATGAA
Statistics
Matches: 303, Mismatches: 39, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
247 181 0.60
248 26 0.09
249 1 0.00
250 1 0.00
257 94 0.31
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (250 bp):
TTCTCGCCTTGAGCTACGCTGTAAATTTGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
TCTTGGTTGACAGATAACCCTTCTCGCCTTAAGTTATGCATGGAATGCCTTTGAGCTGAGTGTAA
TCGAACTCGAAGGCCTTTTGGTGACAGACAACCCTTCTCGCATTGAGTTATGCTGTAAATTTGAT
ATACCTTTGAGATGAATGGAATCAAACTCGAAGATATGTTGTTGACAGATAACCC
Found at i:2215309 original size:95 final size:95
Alignment explanation
Indices: 2215104--2215459 Score: 525
Period size: 95 Copynumber: 3.7 Consensus size: 95
2215094 GGCTAGATAG
* * * * *
2215104 ATCCATAAAGCCGAGGCGTTTAACCAATTTCTCTAGAGGGATAGCTCAATATCATTGTATAG-AT
1 ATCCATAAAGCCGAGGCATTTAACCAATTGCTCTAGAGGGATAACTC-A-AGC-TT-TATTGTAT
* * *
2215168 ATTATAATCACCTTTATCAGGCTAGCTGAATATT
62 ATTATAATCACCTTTATCAGACTAGTTGAATCTT
*
2215202 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATATTA
1 ATCCATAAAGCCGAGGCATTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATATTA
2215267 TAATCACCTTTATCAGACTAGTTGAATCTT
66 TAATCACCTTTATCAGACTAGTTGAATCTT
* *
2215297 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGATAACTCAAGTTTTATTGTATATTA
1 ATCCATAAAGCCGAGGCATTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATATTA
2215362 TAATCACCTTTATCAGACTAGTTGAATCTT
66 TAATCACCTTTATCAGACTAGTTGAATCTT
* * * *
2215392 ATCCATAAAGCCGAGGCGTTTAACCAATTGCTTTAGAGGGACAACTCAAGTTTTATTGTATATAT
1 ATCCATAAAGCCGAGGCATTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATAT-T
2215457 ATA
65 ATA
2215460 TAATATTATA
Statistics
Matches: 242, Mismatches: 14, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
94 4 0.02
95 188 0.78
96 6 0.02
97 1 0.00
98 43 0.18
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (95 bp):
ATCCATAAAGCCGAGGCATTTAACCAATTGCTCTAGAGGGATAACTCAAGCTTTATTGTATATTA
TAATCACCTTTATCAGACTAGTTGAATCTT
Found at i:2219534 original size:23 final size:23
Alignment explanation
Indices: 2219499--2219566 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
2219489 CATTTTATAT
* *
2219499 GGCACTTCAGTGCAATTCTACGC
1 GGCACTTCGGTGCAATTATACGC
* * *
2219522 GGCACTTTGGTGCAATTATATGT
1 GGCACTTCGGTGCAATTATACGC
*
2219545 GGCACTTCGGTGCATTTATACG
1 GGCACTTCGGTGCAATTATACG
2219567 AGCTGTGGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (23 bp):
GGCACTTCGGTGCAATTATACGC
Found at i:2224689 original size:23 final size:23
Alignment explanation
Indices: 2224631--2224691 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
2224621 ATATTTTATA
*
2224631 TGGCACTTCGGTACAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
* *
2224654 CGGCACTTCGGTGCAATTCTATG
1 TGGCACTTCGGTGCAATTCTACG
2224677 TGGCACTTCGGTGCA
1 TGGCACTTCGGTGCA
2224692 TTTATACGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.18, C:0.26, G:0.26, T:0.30
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:2228261 original size:21 final size:21
Alignment explanation
Indices: 2228235--2228275 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
2228225 TCTGGGCAAA
2228235 GTGTATCGATGCACATTCAAT
1 GTGTATCGATGCACATTCAAT
*
2228256 GTGTATCGATGCACTTTCAA
1 GTGTATCGATGCACATTCAA
2228276 ATAAATGAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (21 bp):
GTGTATCGATGCACATTCAAT
Found at i:2229385 original size:23 final size:23
Alignment explanation
Indices: 2229358--2229425 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 23
2229348 TATTTTATAT
*
2229358 GGCACTTCGGTATAATTATACGC
1 GGCACTTCGGTACAATTATACGC
* * * *
2229381 GGCACTTCGGTGCAATTCTATGT
1 GGCACTTCGGTACAATTATACGC
* *
2229404 GGCACTTCGGTGCATTTATACG
1 GGCACTTCGGTACAATTATACG
2229426 AGCTGTGGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (23 bp):
GGCACTTCGGTACAATTATACGC
Found at i:2232181 original size:10 final size:10
Alignment explanation
Indices: 2232162--2232210 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
2232152 GTTAGATCGC
2232162 AAATATAAAA
1 AAATATAAAA
2232172 ATAA-ATAAAA
1 A-AATATAAAA
2232182 AAATATAAAA
1 AAATATAAAA
**
2232192 AAATA-AATT
1 AAATATAAAA
2232201 AAATATAAAA
1 AAATATAAAA
2232211 TCAAGATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
9 9 0.28
10 21 0.66
11 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
AAATATAAAA
Found at i:2232204 original size:19 final size:19
Alignment explanation
Indices: 2232162--2232211 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
2232152 GTTAGATCGC
2232162 AAATATAAAAATAAATAAAA
1 AAATAT-AAAATAAATAAAA
*
2232182 AAATATAAAA-AAATAAATT
1 AAATATAAAATAAATAAA-A
2232201 AAATATAAAAT
1 AAATATAAAAT
2232212 CAAGATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 7 0.26
19 14 0.52
20 6 0.22
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
AAATATAAAATAAATAAAA
Found at i:2232420 original size:18 final size:18
Alignment explanation
Indices: 2232382--2232456 Score: 71
Period size: 18 Copynumber: 4.2 Consensus size: 18
2232372 CAAAAAGGTT
* *
2232382 AAAAGTAAATAGTTG-AA
1 AAAAGGAAAAAGTTGAAA
*
2232399 AAAAGGAAAAGGTTGAAA
1 AAAAGGAAAAAGTTGAAA
*
2232417 AAAAGGAAAAAGTGGAAA
1 AAAAGGAAAAAGTTGAAA
*** *
2232435 AAGTTGAAAAAATTGAAA
1 AAAAGGAAAAAGTTGAAA
2232453 AAAA
1 AAAA
2232457 ACGTTTAGAA
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
17 12 0.27
18 33 0.73
ACGTcount: A:0.64, C:0.00, G:0.21, T:0.15
Consensus pattern (18 bp):
AAAAGGAAAAAGTTGAAA
Found at i:2232452 original size:27 final size:26
Alignment explanation
Indices: 2232394--2232455 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 26
2232384 AAGTAAATAG
*
2232394 TTGAAAAAAGGAAAAGGTTGAAAAAA
1 TTGAAAAAAGGAAAAAGTTGAAAAAA
** *
2232420 AGGAAAAAGTGGAAAAAGTTGAAAAAA
1 TTGAAAAA-AGGAAAAAGTTGAAAAAA
2232447 TTGAAAAAA
1 TTGAAAAAA
2232456 AACGTTTAGA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.15
Consensus pattern (26 bp):
TTGAAAAAAGGAAAAAGTTGAAAAAA
Found at i:2232569 original size:15 final size:16
Alignment explanation
Indices: 2232542--2232573 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
2232532 TATATATAAT
2232542 AATAAAAACCAAAAAA
1 AATAAAAACCAAAAAA
2232558 AATAAAAA-CAAAAAA
1 AATAAAAACCAAAAAA
2232573 A
1 A
2232574 GAAGATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.84, C:0.09, G:0.00, T:0.06
Consensus pattern (16 bp):
AATAAAAACCAAAAAA
Found at i:2233886 original size:2 final size:2
Alignment explanation
Indices: 2233881--2233926 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
2233871 TGTGTAAATA
*
2233881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2233922 AT AT A
1 AT AT A
2233927 CTCGTATAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2235094 original size:15 final size:15
Alignment explanation
Indices: 2235076--2235108 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
2235066 GGGACCCCTT
2235076 TAATGGCGTAAATGA
1 TAATGGCGTAAATGA
2235091 TAATGGCGTAAATGA
1 TAATGGCGTAAATGA
2235106 TAA
1 TAA
2235109 ATGGTAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.27
Consensus pattern (15 bp):
TAATGGCGTAAATGA
Found at i:2238467 original size:17 final size:17
Alignment explanation
Indices: 2238417--2238468 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
2238407 AAGAGTTTTG
2238417 TAATACTGAAATTTAAA
1 TAATACTGAAATTTAAA
** *
2238434 TAAT--TTTAATTT-TA
1 TAATACTGAAATTTAAA
2238448 TAATACTGAAATTTAAA
1 TAATACTGAAATTTAAA
2238465 TAAT
1 TAAT
2238469 CCATATAACT
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.23
16 6 0.23
17 9 0.35
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (17 bp):
TAATACTGAAATTTAAA
Found at i:2240726 original size:31 final size:30
Alignment explanation
Indices: 2240688--2240796 Score: 137
Period size: 31 Copynumber: 3.5 Consensus size: 30
2240678 CTTTTAAACA
** **
2240688 TTGCAATACAGTCCCTCAATATTTAGTCCGT
1 TTGCAATATGGTCCC-CAATATTTAGTATGT
*
2240719 TTGCAATATGGTCCCCCAACATTTAGTATGT
1 TTGCAATATGGT-CCCCAATATTTAGTATGT
*
2240750 TTGCAATATGGTCCCCTAATATTTAGTTTGT
1 TTGCAATATGGTCCCC-AATATTTAGTATGT
2240781 TTGCAATATGGTCCCC
1 TTGCAATATGGTCCCC
2240797 GAAGTATCTA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
30 4 0.06
31 62 0.90
32 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (30 bp):
TTGCAATATGGTCCCCAATATTTAGTATGT
Found at i:2242900 original size:2 final size:2
Alignment explanation
Indices: 2242893--2242933 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
2242883 ATACGACTGA
2242893 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2242934 TAGAAAAGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2243469 original size:30 final size:31
Alignment explanation
Indices: 2243393--2243469 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
2243383 TAGTTACTTC
**
2243393 GGGGACTATATTGCAAATAGACTAAATGTTG
1 GGGGACTATATTGCAAATAGACTAAACATTG
* *
2243424 GGGGACCATACTGCAAAT-GTACTAAACATT-
1 GGGGACTATATTGCAAATAG-ACTAAACATTG
*
2243454 GGGGACTGTATTGCAA
1 GGGGACTATATTGCAA
2243470 GTTTTAAAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 14 0.37
31 24 0.63
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (31 bp):
GGGGACTATATTGCAAATAGACTAAACATTG
Found at i:2247841 original size:31 final size:30
Alignment explanation
Indices: 2247803--2247911 Score: 137
Period size: 31 Copynumber: 3.5 Consensus size: 30
2247793 CTTTTAAACA
** **
2247803 TTGCAATACAGTCCCTCAATATTTAGTCCGT
1 TTGCAATATGGTCCC-CAATATTTAGTATGT
*
2247834 TTGCAATATGGTCCCCCAACATTTAGTATGT
1 TTGCAATATGGT-CCCCAATATTTAGTATGT
*
2247865 TTGCAATATGGTCCCCTAATATTTAGTTTGT
1 TTGCAATATGGTCCCC-AATATTTAGTATGT
2247896 TTGCAATATGGTCCCC
1 TTGCAATATGGTCCCC
2247912 GAAGTATCTA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
30 4 0.06
31 62 0.90
32 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (30 bp):
TTGCAATATGGTCCCCAATATTTAGTATGT
Found at i:2250007 original size:2 final size:2
Alignment explanation
Indices: 2250000--2250036 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
2249990 ATACGACTGA
2250000 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2250037 ATAGAAAAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2250573 original size:30 final size:31
Alignment explanation
Indices: 2250497--2250573 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 31
2250487 TAGTTACTTC
**
2250497 GGGGACTATATTGCAAATAGACTAAATGTTG
1 GGGGACTATATTGCAAATAGACTAAACATTG
* *
2250528 GGGGACCATACTGCAAAT-GTACTAAACATT-
1 GGGGACTATATTGCAAATAG-ACTAAACATTG
*
2250558 GGGGACTGTATTGCAA
1 GGGGACTATATTGCAA
2250574 GTTTTAAAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 14 0.37
31 24 0.63
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (31 bp):
GGGGACTATATTGCAAATAGACTAAACATTG
Found at i:2254712 original size:77 final size:78
Alignment explanation
Indices: 2254608--2254761 Score: 201
Period size: 77 Copynumber: 2.0 Consensus size: 78
2254598 TTTGAATTAA
2254608 TTAAATCTTATTTAATTAATTCAAATTAAATATCCATT-AAAGACTTATAATTC-AAATTACACT
1 TTAAATCTTATTTAATTAATTCAAATTAAATATCCATTAAAAGACTTATAA-TCGAAATTACACT
2254671 C-TTTAATGTTTAT
65 CTTTTAATGTTTAT
* * *
2254684 TTAAACTCTTATTTAATT-ATT-ATGAATTAAATATCCATTAAAAGAGTTGTAATCGAAATTATA
1 TTAAA-TCTTATTTAATTAATTCA--AATTAAATATCCATTAAAAGACTTATAATCGAAATTACA
*
2254747 TTCTTTTAATGTTTA
63 CTCTTTTAATGTTTA
2254762 CTTACTATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
75 1 0.01
76 8 0.12
77 29 0.43
78 19 0.28
79 11 0.16
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (78 bp):
TTAAATCTTATTTAATTAATTCAAATTAAATATCCATTAAAAGACTTATAATCGAAATTACACTC
TTTTAATGTTTAT
Found at i:2263831 original size:16 final size:17
Alignment explanation
Indices: 2263810--2263847 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
2263800 CATCCCCTTA
2263810 AAAAAGG-TTGCAACAT
1 AAAAAGGATTGCAACAT
*
2263826 AAAAAGGAATTGCAACCT
1 AAAAAGG-ATTGCAACAT
2263844 AAAA
1 AAAA
2263848 TGTGGTGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
18 12 0.63
ACGTcount: A:0.55, C:0.13, G:0.16, T:0.16
Consensus pattern (17 bp):
AAAAAGGATTGCAACAT
Found at i:2264017 original size:31 final size:31
Alignment explanation
Indices: 2263938--2264017 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
2263928 TATGTGGTGC
** *
2263938 AACCATAAAATAATTTGAAACTTAAAATGAT
1 AACCATAAAATAGGTTGCAACTTAAAATGAT
2263969 AACCATAAAATAGGTTGCAACTTAAAATGAT
1 AACCATAAAATAGGTTGCAACTTAAAATGAT
2264000 AACCATAAAATAGGTTGC
1 AACCATAAAATAGGTTGC
2264018 TTGATTGTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.26
Consensus pattern (31 bp):
AACCATAAAATAGGTTGCAACTTAAAATGAT
Found at i:2266166 original size:12 final size:12
Alignment explanation
Indices: 2266143--2266183 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
2266133 TATCTTTACC
2266143 TATATTATTATTA
1 TATATT-TTATTA
2266156 T-TATTTATATTA
1 TATATTT-TATTA
2266168 TATATTTTATTA
1 TATATTTTATTA
2266180 TATA
1 TATA
2266184 CCTATTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 1 0.04
12 19 0.73
13 6 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:2270306 original size:18 final size:18
Alignment explanation
Indices: 2270283--2270321 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
2270273 GGGTTATGCT
2270283 ACAAAGCCTGGAGAAGAA
1 ACAAAGCCTGGAGAAGAA
2270301 ACAAAGCCTGGAGAAGAA
1 ACAAAGCCTGGAGAAGAA
2270319 ACA
1 ACA
2270322 CAACGAGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.51, C:0.18, G:0.26, T:0.05
Consensus pattern (18 bp):
ACAAAGCCTGGAGAAGAA
Found at i:2276569 original size:8 final size:8
Alignment explanation
Indices: 2276558--2276593 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
2276548 AAAAAAAATA
2276558 AAAAAGAG
1 AAAAAGAG
2276566 AAAAAGA-
1 AAAAAGAG
2276573 ACAAAAGAG
1 A-AAAAGAG
2276582 AAAAAGAG
1 AAAAAGAG
2276590 AAAA
1 AAAA
2276594 TAAAAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 1 0.04
8 24 0.92
9 1 0.04
ACGTcount: A:0.78, C:0.03, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAGAG
Found at i:2277598 original size:120 final size:119
Alignment explanation
Indices: 2277384--2277603 Score: 254
Period size: 120 Copynumber: 1.8 Consensus size: 119
2277374 CTCAAGAGTA
* * * *
2277384 GATTTCAACTTCACGACGAAAGATATCTAGCTCGAAGCCAAACTTCACAATAAAGGGGTCATCCA
1 GATTTCAACTTCACGACGAAAGATATCAAGCTCGAAGCCAAACTTCACAACAAAGGGGCCATCAA
* *
2277449 CTGTTTCAACTTCACGGCGAAGGGAATCGTGTCCACCCACAACGTACGATACTTG
66 CTGTTTCAACTCCACGACGAAGGGAATCGTG-CCACCCACAACGTACGATACTTG
* *
2277504 GATTTCAACTTCACGACGAAGGATATTCAAG-TC-AAGGCTC-AACTTCA-AGACGAAGGGGCCA
1 GATTTCAACTTCACGACGAAAGATA-TCAAGCTCGAA-GC-CAAACTTCACA-ACAAAGGGGCCA
*
2277565 TCAAC-GATTTCAACTCCACGACGGA-GGATATCGTGCCAC
62 TCAACTG-TTTCAACTCCACGACGAAGGGA-ATCGTGCCAC
2277604 TCGAGACAAC
Statistics
Matches: 85, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
119 11 0.13
120 69 0.81
121 5 0.06
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (119 bp):
GATTTCAACTTCACGACGAAAGATATCAAGCTCGAAGCCAAACTTCACAACAAAGGGGCCATCAA
CTGTTTCAACTCCACGACGAAGGGAATCGTGCCACCCACAACGTACGATACTTG
Found at i:2277735 original size:106 final size:106
Alignment explanation
Indices: 2277602--2277798 Score: 290
Period size: 106 Copynumber: 1.9 Consensus size: 106
2277592 ATATCGTGCC
*
2277602 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAA-TTCCT
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGCTGTCAACAAACAATTTCC-
* * *
2277666 CAGTTTCAGAGTCAATTTCAACTTCACATCGAAGGATATTAG
65 CAGTTCCAAAGCCAATTTCAACTTCACATCGAAGGATATTAG
* * * *
2277708 ACTCGAGACAGCATAAGCTT-AACTTCACAGCGAAGGGGCGGCTGGCTGTCAACAAACAATTTCC
1 ACTCGAGACAACACAAG-TTCAACTTCACAACGAAGGGACGGCTGGCTGTCAACAAACAATTTCC
2277772 CAGTTCCAAAGCCAATTTCAACTTCAC
65 CAGTTCCAAAGCCAATTTCAACTTCAC
2277799 GGCAGAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
106 75 0.93
107 6 0.07
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGCTGTCAACAAACAATTTCCC
AGTTCCAAAGCCAATTTCAACTTCACATCGAAGGATATTAG
Found at i:2279606 original size:21 final size:19
Alignment explanation
Indices: 2279582--2279625 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
2279572 TATCTTTACC
2279582 TATATTATTATTATTGTTATT-
1 TATATTA-TATT-TT-TTATTA
2279603 TATATTATATTTTTTATTA
1 TATATTATATTTTTTATTA
2279622 TATA
1 TATA
2279626 CATATTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.23
19 6 0.27
20 4 0.18
21 7 0.32
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TATATTATATTTTTTATTA
Found at i:2279781 original size:22 final size:22
Alignment explanation
Indices: 2279754--2279801 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
2279744 TTTTCTACAA
2279754 TTATTTTACTA-ATA-TTATATCT
1 TTATTTTA-TATATATTTATAT-T
2279776 TTA-TTTATATATATTTATATT
1 TTATTTTATATATATTTATATT
2279797 TTATT
1 TTATT
2279802 ATCTCCTAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.09
21 11 0.48
22 10 0.43
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (22 bp):
TTATTTTATATATATTTATATT
Found at i:2281878 original size:2 final size:2
Alignment explanation
Indices: 2281871--2281909 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
2281861 TACCTTCACC
2281871 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
2281910 TTCTTTTCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2285287 original size:14 final size:14
Alignment explanation
Indices: 2285268--2285295 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2285258 CATCTCTTTT
2285268 TCATATACCTCCGG
1 TCATATACCTCCGG
2285282 TCATATACCTCCGG
1 TCATATACCTCCGG
2285296 CGTGAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (14 bp):
TCATATACCTCCGG
Found at i:2291107 original size:17 final size:17
Alignment explanation
Indices: 2291085--2291118 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2291075 TTGACCGGTT
2291085 TCGACCCGACCGTTGAC
1 TCGACCCGACCGTTGAC
2291102 TCGACCCGACCGTTGAC
1 TCGACCCGACCGTTGAC
2291119 CGTTGTCCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.18
Consensus pattern (17 bp):
TCGACCCGACCGTTGAC
Found at i:2291169 original size:29 final size:30
Alignment explanation
Indices: 2291127--2291201 Score: 107
Period size: 29 Copynumber: 2.5 Consensus size: 30
2291117 ACCGTTGTCC
* *
2291127 GGTGCTATTTTAGTAATTAATTCGAAATA-
1 GGTGCTATTTTAGTAATTAATTCAAAAAAG
*
2291156 GGTGCTATTTTAGTAATTAATTTAAAAAAG
1 GGTGCTATTTTAGTAATTAATTCAAAAAAG
*
2291186 GGTGCTATTTTTGTAA
1 GGTGCTATTTTAGTAA
2291202 AATGGTTGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.63
30 15 0.37
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (30 bp):
GGTGCTATTTTAGTAATTAATTCAAAAAAG
Found at i:2298303 original size:13 final size:12
Alignment explanation
Indices: 2298278--2298318 Score: 73
Period size: 12 Copynumber: 3.3 Consensus size: 12
2298268 GTTCCGACCC
2298278 GACCCGACCGTT
1 GACCCGACCGTT
2298290 GACCCGACCCGTT
1 GACCCGA-CCGTT
2298303 GACCCGACCGTT
1 GACCCGACCGTT
2298315 GACC
1 GACC
2298319 GTTGACCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 16 0.57
13 12 0.43
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.15
Consensus pattern (12 bp):
GACCCGACCGTT
Found at i:2298393 original size:29 final size:29
Alignment explanation
Indices: 2298326--2298393 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
2298316 ACCGTTGACC
*
2298326 GGTGCTATTTTAGTAATTAATTCGAAATA
1 GGTGCTATTTTAGTAATTAATTCGAAAAA
* *
2298355 GGTGCCATTTTAGTAATTAATT-TAAAAA
1 GGTGCTATTTTAGTAATTAATTCGAAAAA
*
2298383 GGGTGTTATTT
1 -GGTGCTATTT
2298394 CTGTAAAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.43
Consensus pattern (29 bp):
GGTGCTATTTTAGTAATTAATTCGAAAAA
Found at i:2303767 original size:24 final size:24
Alignment explanation
Indices: 2303740--2303787 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
2303730 TTCATCATTC
*
2303740 TTCAAGGATCGAATCAAATGAGAT
1 TTCAAGGATCGAATCAAATCAGAT
*
2303764 TTCAAGGATTGAATCAAATCAGAT
1 TTCAAGGATCGAATCAAATCAGAT
2303788 AACAAATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (24 bp):
TTCAAGGATCGAATCAAATCAGAT
Found at i:2303836 original size:28 final size:29
Alignment explanation
Indices: 2303797--2303906 Score: 111
Period size: 28 Copynumber: 3.8 Consensus size: 29
2303787 TAACAAATGG
* *
2303797 ATAATAATATTT-TTATTTTAATGTTATG
1 ATAATAATATTTATTATTTTAATGATATA
*
2303825 ATAATAATATTTGA-TATTTTAATAATATA
1 ATAATAATATTT-ATTATTTTAATGATATA
* **
2303854 ATATTTTTATTT-TTATTTTAAT-ATATA
1 ATAATAATATTTATTATTTTAATGATATA
2303881 ATTAATAATATTTATTATTTTTAATG
1 A-TAATAATATTTATTA-TTTTAATG
2303907 TAAAGAAGAA
Statistics
Matches: 66, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
27 6 0.09
28 29 0.44
29 24 0.36
30 7 0.11
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (29 bp):
ATAATAATATTTATTATTTTAATGATATA
Found at i:2309101 original size:30 final size:31
Alignment explanation
Indices: 2309065--2309122 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
2309055 AAACACATCG
2309065 AAAAATTAATTGAAAAAACAT-AATAAATAT
1 AAAAATTAATTGAAAAAACATAAATAAATAT
* *
2309095 AAAAATTAATTTAATAAACATAAATAAA
1 AAAAATTAATTGAAAAAACATAAATAAA
2309123 CAAAAGTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (31 bp):
AAAAATTAATTGAAAAAACATAAATAAATAT
Found at i:2311652 original size:52 final size:53
Alignment explanation
Indices: 2311596--2311717 Score: 144
Period size: 52 Copynumber: 2.3 Consensus size: 53
2311586 TATCGGTTAG
* *
2311596 GGTTATAAAAGATTAACACA-AGA-AGAAGAAAAAGAGGCTTA-TTAGGGTTTGA
1 GGTTAGAAAAGA-TAA-ACATAGACAAAAGAAAAAGAGGCTTAGTTAGGGTTTGA
* *
2311648 GGTTAGAGAAGATAAACATAGACAAAAGATAAAGAGGCTTAGTTAGGGTTT-A
1 GGTTAGAAAAGATAAACATAGACAAAAGAAAAAGAGGCTTAGTTAGGGTTTGA
*
2311700 GGATTAGAGAAGATAAAC
1 GG-TTAGAAAAGATAAAC
2311718 TGAGATAGAA
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 29 0.47
53 24 0.39
ACGTcount: A:0.46, C:0.06, G:0.26, T:0.22
Consensus pattern (53 bp):
GGTTAGAAAAGATAAACATAGACAAAAGAAAAAGAGGCTTAGTTAGGGTTTGA
Found at i:2311709 original size:53 final size:53
Alignment explanation
Indices: 2311621--2311820 Score: 203
Period size: 53 Copynumber: 3.7 Consensus size: 53
2311611 ACACAAGAAG
* *
2311621 AAGAAAAAGAGGCTTA-TTAGGGTTTGAGGTTAGAGAAGATAAACATAGACA-A
1 AAGATAAAGAGGCTTAGTTAGGGTTT-AGGTTAGAGAAGATAAACATAGAAAGA
*
2311673 AAGATAAAGAGGCTTAGTTAGGGTTTAGGATTAGAGAAGATAAAC-TGAGATAGA
1 AAGATAAAGAGGCTTAGTTAGGGTTTAGG-TTAGAGAAGATAAACAT-AGAAAGA
* ** * * * *
2311727 AA-ATGAAGAATCTTAGTTAGGGTTTATGTTTAGAGAATATGAACATATAAAGA
1 AAGATAAAGAGGCTTAGTTAGGGTTTA-GGTTAGAGAAGATAAACATAGAAAGA
*
2311780 AAAATAATAAGAGGCTT-GATTAGGGTTTAGGTTAGAGAAGA
1 AAGAT-A-AAGAGGCTTAG-TTAGGGTTTAGGTTAGAGAAGA
2311821 AGAACTTGAA
Statistics
Matches: 123, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
52 19 0.15
53 69 0.56
54 7 0.06
55 11 0.09
56 17 0.14
ACGTcount: A:0.43, C:0.04, G:0.27, T:0.26
Consensus pattern (53 bp):
AAGATAAAGAGGCTTAGTTAGGGTTTAGGTTAGAGAAGATAAACATAGAAAGA
Found at i:2312100 original size:102 final size:99
Alignment explanation
Indices: 2311868--2312164 Score: 312
Period size: 100 Copynumber: 2.9 Consensus size: 99
2311858 AAATAGTTTG
* * * *
2311868 AGTTTTGGTTTTGGGTGTTTGTAAGGATCAAACAAGGGTTTGAGGATGAATATGGATAAATAAGT
1 AGTTTTGGTTTTGGGTGTTTGTAA-GATCAAACAAGGGTTTAAGGATGAAAATGGATGAATAAGG
*
2311933 GTTGAGGATTT-GGG-GTTTGATTAAAAAATAGGTTA
65 GTTGA--ATTTGGGGTGTTTGATTAAAAAATAGGATA
* * *
2311968 AGTTTTGGTTTTGGGTGTTTGAAAAGATCAAAGAAGGGTTTAAAGATGAAAATGGATGAATAAAG
1 AGTTTTGGTTTTGGGTGTTTG-TAAGATCAAACAAGGGTTTAAGGATGAAAATGGATGAAT-AAG
*
2312033 GGTTTAATTTGGGGTGTTTGATTGAAAAAATAGGATA
64 GGTTGAATTTGGGGTGTTTGATT-AAAAAATAGGATA
* * * * * * * *
2312070 AGGTTTGGGTTTT-GGTGTTTGTGAATATCAAATAATGGTTTTTAGGATGAACACGGATGAACAA
1 A-GTTTTGGTTTTGGGTGTTTGT-AAGATCAAACAA-GGGTTTAAGGATGAAAATGGATGAATAA
* * *
2312134 TGGATGAATTTGGGGTGTTTGAATAAAAAAT
63 GGGTTGAATTTGGGGTGTTTGATTAAAAAAT
2312165 CAAAATATTT
Statistics
Matches: 166, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
99 4 0.02
100 55 0.33
101 24 0.14
102 53 0.32
103 30 0.18
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (99 bp):
AGTTTTGGTTTTGGGTGTTTGTAAGATCAAACAAGGGTTTAAGGATGAAAATGGATGAATAAGGG
TTGAATTTGGGGTGTTTGATTAAAAAATAGGATA
Found at i:2312638 original size:31 final size:31
Alignment explanation
Indices: 2312564--2312639 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
2312554 AATATATATA
* *
2312564 ATATAATTCATATAGTTTACACTAATGAACT
1 ATATAATTTATATAGTTTACACTAATAAACT
* *
2312595 ATGTAATATATATAGTTTACACTAATAAACT
1 ATATAATTTATATAGTTTACACTAATAAACT
*
2312626 ATATAGTTTATATA
1 ATATAATTTATATA
2312640 TATGGTTTGT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (31 bp):
ATATAATTTATATAGTTTACACTAATAAACT
Found at i:2312729 original size:20 final size:20
Alignment explanation
Indices: 2312660--2312729 Score: 52
Period size: 20 Copynumber: 3.3 Consensus size: 20
2312650 GTATTATTTA
*
2312660 TTTATAGAATATATATATAG
1 TTTATAGATTATATATATAG
* *
2312680 TTCATTAATAAATTATATAGTCTA-
1 -T--TT-ATAGATTATATA-TATAG
*
2312704 TATATAGATTATATATATAG
1 TTTATAGATTATATATATAG
2312724 TTTATA
1 TTTATA
2312730 CATACAGTCT
Statistics
Matches: 37, Mismatches: 7, Indels: 11
0.67 0.13 0.20
Matches are distributed among these distances:
19 3 0.08
20 16 0.43
21 2 0.05
23 3 0.08
24 10 0.27
25 3 0.08
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (20 bp):
TTTATAGATTATATATATAG
Found at i:2312799 original size:11 final size:11
Alignment explanation
Indices: 2312783--2312841 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
2312773 TTAAGTAAAC
2312783 TATATAGTATA
1 TATATAGTATA
*
2312794 TATATAATATA
1 TATATAGTATA
* *
2312805 TAGTTTA-TCTA
1 TA-TATAGTATA
*
2312816 TATATATTATA
1 TATATAGTATA
*
2312827 TATATAGTTTA
1 TATATAGTATA
2312838 TATA
1 TATA
2312842 AATAGTTTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
10 3 0.08
11 33 0.85
12 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (11 bp):
TATATAGTATA
Found at i:2312838 original size:13 final size:13
Alignment explanation
Indices: 2312800--2312904 Score: 86
Period size: 13 Copynumber: 7.5 Consensus size: 13
2312790 TATATATATA
2312800 ATATATAGTTTAT
1 ATATATAGTTTAT
*
2312813 CTATATA-TATTAT
1 ATATATAGT-TTAT
2312826 ATATATAGTTTAT
1 ATATATAGTTTAT
*
2312839 ATAAATAGTTTCCAT
1 ATATATAGTTT--AT
* * *
2312854 AGTTTATAGTAGTAA
1 A-TATATAGT-TTAT
2312869 ACTATATAGTTTAT
1 A-TATATAGTTTAT
2312883 ACGTATATAGTTTAT
1 A--TATATAGTTTAT
2312898 ATATATA
1 ATATATA
2312905 TGTTAAGAAG
Statistics
Matches: 73, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
12 1 0.01
13 36 0.49
14 4 0.05
15 25 0.34
16 6 0.08
17 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (13 bp):
ATATATAGTTTAT
Done.